AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96621

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96621.t1 MTR_6g089580 96.038 631 22 1 1 631 1 628 0.0 1265
MS.gene96621.t1 MTR_6g464840 96.197 631 21 1 1 631 1 628 0.0 1265
MS.gene96621.t1 MTR_1g101790 66.515 660 169 14 6 631 2 643 0.0 845
MS.gene96621.t1 MTR_1g101790 66.102 649 168 14 6 620 2 632 0.0 823
MS.gene96621.t1 MTR_4g102620 48.457 648 275 15 5 631 6 615 0.0 576
MS.gene96621.t1 MTR_8g079040 46.250 320 143 5 61 374 104 400 5.91e-85 285
MS.gene96621.t1 MTR_8g079040 44.253 174 83 4 458 617 751 924 1.06e-35 144
MS.gene96621.t1 MTR_8g079020 45.266 338 154 6 43 374 88 400 6.40e-85 285
MS.gene96621.t1 MTR_8g079020 43.860 171 82 3 458 614 755 925 7.91e-34 138
MS.gene96621.t1 MTR_3g099200 29.630 189 114 7 175 356 134 310 1.49e-16 81.6
MS.gene96621.t1 MTR_3g099200 29.630 189 114 7 175 356 181 357 1.56e-16 82.0
MS.gene96621.t1 MTR_4g104060 28.022 182 119 6 175 356 172 341 1.98e-14 75.5
MS.gene96621.t1 MTR_4g104060 28.022 182 119 6 175 356 158 327 2.03e-14 75.5
MS.gene96621.t1 MTR_4g030930 26.761 213 118 8 179 361 34 238 2.27e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96621.t1 AT5G51920 50.000 614 230 10 13 620 14 556 0.0 584
MS.gene96621.t1 AT4G22980 38.596 627 302 13 7 626 7 557 2.16e-135 407
MS.gene96621.t1 AT5G66950 45.562 338 154 6 43 374 86 399 1.04e-87 291
MS.gene96621.t1 AT5G66950 45.143 175 91 2 447 616 681 855 1.89e-37 149
MS.gene96621.t1 AT4G37100 46.057 317 143 5 65 374 110 405 3.56e-86 288
MS.gene96621.t1 AT4G37100 42.778 180 93 4 444 613 696 875 6.55e-35 142
MS.gene96621.t1 AT2G23520 43.195 338 162 6 43 374 88 401 9.43e-85 284
MS.gene96621.t1 AT2G23520 37.349 249 116 8 384 613 649 876 2.20e-33 137
MS.gene96621.t1 AT1G16540 25.312 320 172 11 76 361 7 293 1.19e-16 84.3
MS.gene96621.t1 AT1G16540 25.312 320 172 11 76 361 7 293 1.38e-16 84.3
MS.gene96621.t1 AT1G16540 25.312 320 172 11 76 361 7 293 1.53e-16 84.3

Find 77 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGTGCTACGCCGATTT+TGG 0.177984 6.3:+57225659 MS.gene96621:CDS
CATACTTGTCTTGATTATAT+TGG 0.264072 6.3:+57224916 MS.gene96621:CDS
ATGGATTGTTGCATCATATA+TGG 0.266349 6.3:+57226246 MS.gene96621:CDS
CCTCTATCAAATTTGACTTT+TGG 0.267902 6.3:-57226125 None:intergenic
GAAGAATTTGTTTCCAAAAT+CGG 0.277389 6.3:-57225672 None:intergenic
GGAGAAAACCCTTCTGGATT+TGG 0.277617 6.3:+57225621 MS.gene96621:CDS
CTTCTACGGCTTCGCTTTCA+TGG 0.278189 6.3:-57225275 None:intergenic
TTGAAGATATCTATAATCTT+TGG 0.287935 6.3:+57226384 MS.gene96621:CDS
ATGTTTGTGAGGTTTCATTT+TGG 0.288464 6.3:-57224615 None:intergenic
GTGCGAGGTACTTGATTAAC+TGG 0.317575 6.3:+57226033 MS.gene96621:CDS
GATGAACTGTTTCTGTGTTT+TGG 0.319963 6.3:-57224700 None:intergenic
ACTGTTGTTACTGCTGCATT+AGG 0.320994 6.3:+57226347 MS.gene96621:CDS
GAGCAAGATATCCTTATATA+TGG 0.332050 6.3:+57225466 MS.gene96621:CDS
TTGGTTGATGCATGTGCATT+AGG 0.335994 6.3:+57225522 MS.gene96621:CDS
CCGAAACAATCCATGTCTTT+TGG 0.337312 6.3:-57225546 None:intergenic
GACAAAGACGTCATATAAAA+TGG 0.346040 6.3:-57225771 None:intergenic
TGTCTTGATTATATTGGTAT+TGG 0.348868 6.3:+57224922 MS.gene96621:CDS
GCTATACTAATCCATATATA+AGG 0.349125 6.3:-57225477 None:intergenic
TCTCATTGCTGACTCGAATT+CGG 0.360721 6.3:-57225115 None:intergenic
AGAGAATGGTTGGAATGTTT+TGG 0.364542 6.3:+57225503 MS.gene96621:CDS
TTTAGTATATCCTGCAAAAC+AGG 0.365144 6.3:+57225054 MS.gene96621:CDS
TTGCATTCAATATATTTGAT+TGG 0.365335 6.3:+57226156 MS.gene96621:CDS
AGAAAACTGTTGAAGTTTAG+TGG 0.368708 6.3:+57226477 MS.gene96621:CDS
TTAGATCAAGTGGATTCATT+AGG 0.372557 6.3:+57225990 MS.gene96621:CDS
CGCGAAAGTGCGACGACATT+CGG 0.373407 6.3:-57224722 None:intergenic
AGAGATACCCCTTCAGTGTT+AGG 0.374931 6.3:-57226086 None:intergenic
GCAAGTTCAAATCGATGAAA+AGG 0.379374 6.3:+57225917 MS.gene96621:CDS
ATCGGAAAACGATTACTTCA+TGG 0.389650 6.3:+57225164 MS.gene96621:CDS
CAAGAACAAATAAGAAAATC+TGG 0.394646 6.3:-57225585 None:intergenic
CCTCTTCATTCAAGAGTAAC+CGG 0.394667 6.3:+57225444 MS.gene96621:CDS
CGAACTAACCATCGCTTCTA+CGG 0.410941 6.3:-57225289 None:intergenic
AATATATTGAATGCAATTGC+AGG 0.415602 6.3:-57226149 None:intergenic
TTGAATGATTCTTGAAATGA+TGG 0.425269 6.3:-57224802 None:intergenic
GTTGATTGAATTCTCAGCCT+TGG 0.430750 6.3:-57225357 None:intergenic
GTATCTCTAGTGAAGATTTA+CGG 0.433873 6.3:+57226101 MS.gene96621:CDS
TTCTTCTTCATCTAAATGTA+AGG 0.434934 6.3:-57225748 None:intergenic
AGATAAGTATGCCGATGAAA+AGG 0.438948 6.3:+57226274 MS.gene96621:CDS
CATGAATTACCTTAACATAT+CGG 0.439358 6.3:+57225146 MS.gene96621:CDS
CCAAAAGACATGGATTGTTT+CGG 0.440180 6.3:+57225546 MS.gene96621:CDS
ATCTGAAATTTGTGAAATTG+AGG 0.449128 6.3:+57225884 MS.gene96621:CDS
AGTAATATTTCTATCAGCTA+TGG 0.451011 6.3:+57226227 MS.gene96621:CDS
TGGTTTGTGAAATGAGTGTT+TGG 0.462481 6.3:-57224769 None:intergenic
GAAATGATGGAAGAGATTCA+TGG 0.463690 6.3:-57224789 None:intergenic
TTGGAAACAAATTCTTCTGT+AGG 0.464329 6.3:+57225678 MS.gene96621:CDS
TTGAAGACTTTGCTTCTACA+TGG 0.475269 6.3:+57225081 MS.gene96621:CDS
CCAAAAGTCAAATTTGATAG+AGG 0.483068 6.3:+57226125 MS.gene96621:CDS
TTCAATATATTTGATTGGAA+AGG 0.488166 6.3:+57226161 MS.gene96621:CDS
AAAACTTTGATATTAAATGT+AGG 0.492163 6.3:+57225964 MS.gene96621:CDS
ATGTAGGTGTTTAGATCAAG+TGG 0.496812 6.3:+57225980 MS.gene96621:CDS
GATAAGTATGCCGATGAAAA+GGG 0.499232 6.3:+57226275 MS.gene96621:CDS
CAACCTGCAAAATTCGTTGA+AGG 0.500453 6.3:+57225813 MS.gene96621:CDS
GTATAGCGAAAGAGAATGGT+TGG 0.511482 6.3:+57225493 MS.gene96621:CDS
CAAGTTCAAATCGATGAAAA+GGG 0.520584 6.3:+57225918 MS.gene96621:CDS
TCAATTTCACAAATTTCAGA+TGG 0.534494 6.3:-57225882 None:intergenic
TCAGATGGTTTCGACACACT+TGG 0.543219 6.3:-57225867 None:intergenic
ATGAGTGTTTGGAAAGATTG+AGG 0.544251 6.3:-57224758 None:intergenic
ATTAGTATAGCGAAAGAGAA+TGG 0.548295 6.3:+57225489 MS.gene96621:CDS
TTAAGCATCCTAACACTGAA+GGG 0.555320 6.3:+57226078 MS.gene96621:CDS
AATTTGTGAAATTGAGGAGG+TGG 0.569049 6.3:+57225890 MS.gene96621:CDS
TATATAAGGATATCTTGCTC+CGG 0.584352 6.3:-57225463 None:intergenic
GAATTCAATCAACAAAATTG+AGG 0.587326 6.3:+57225367 MS.gene96621:CDS
AACGGCATATCGGAAAATTG+AGG 0.597999 6.3:-57225030 None:intergenic
AAAAGGCAACCAAATCCAGA+AGG 0.598988 6.3:-57225630 None:intergenic
CCGGTTACTCTTGAATGAAG+AGG 0.600713 6.3:-57225444 None:intergenic
CTTAAGCATCCTAACACTGA+AGG 0.604887 6.3:+57226077 MS.gene96621:CDS
AAGACTTTGCTTCTACATGG+TGG 0.606842 6.3:+57225084 MS.gene96621:CDS
AAGCGAAGCCGTAGAAGCGA+TGG 0.608643 6.3:+57225281 MS.gene96621:CDS
GAGGTACTTGATTAACTGGT+TGG 0.612614 6.3:+57226037 MS.gene96621:CDS
CATTGCAACAACATTGATGA+GGG 0.634621 6.3:-57224639 None:intergenic
TGCATTAGGACCAAAAGACA+TGG 0.636735 6.3:+57225536 MS.gene96621:CDS
ACATTGCAACAACATTGATG+AGG 0.642037 6.3:-57224640 None:intergenic
TGAAATTTGTGAAATTGAGG+AGG 0.643306 6.3:+57225887 MS.gene96621:CDS
AAAGGCAACCAAATCCAGAA+GGG 0.648687 6.3:-57225629 None:intergenic
TAAGCATCCTAACACTGAAG+GGG 0.657737 6.3:+57226079 MS.gene96621:CDS
TTGATGAGGGCATGTTTGTG+AGG 0.661881 6.3:-57224626 None:intergenic
TACTGATCAATGATCGTGCG+AGG 0.670329 6.3:+57226018 MS.gene96621:CDS
TTCTGAGACGAAGATCGTAG+AGG 0.697711 6.3:+57225842 MS.gene96621:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTTGATATTAAATGT+AGG + chr6.3:57225964-57225983 MS.gene96621:CDS 15.0%
!! AAGAAAGATAAAGAAAAAGT+TGG + chr6.3:57226320-57226339 MS.gene96621:CDS 20.0%
!! AGAAAGAAGAAGAAAAATAA+GGG + chr6.3:57225408-57225427 MS.gene96621:CDS 20.0%
!! TTCAATATATTTGATTGGAA+AGG + chr6.3:57226161-57226180 MS.gene96621:CDS 20.0%
!! TTGAAGATATCTATAATCTT+TGG + chr6.3:57226384-57226403 MS.gene96621:CDS 20.0%
!! TTGCATTCAATATATTTGAT+TGG + chr6.3:57226156-57226175 MS.gene96621:CDS 20.0%
!!! TGTTCTTGTTATAAAGTTTT+TGG + chr6.3:57225600-57225619 MS.gene96621:CDS 20.0%
! AATATATTGAATGCAATTGC+AGG - chr6.3:57226152-57226171 None:intergenic 25.0%
! CAAGAACAAATAAGAAAATC+TGG - chr6.3:57225588-57225607 None:intergenic 25.0%
! CATACTTGTCTTGATTATAT+TGG + chr6.3:57224916-57224935 MS.gene96621:CDS 25.0%
! CATGAATTACCTTAACATAT+CGG + chr6.3:57225146-57225165 MS.gene96621:CDS 25.0%
! GAATTCAATCAACAAAATTG+AGG + chr6.3:57225367-57225386 MS.gene96621:CDS 25.0%
! GAGAAAGAAGAAGAAAAATA+AGG + chr6.3:57225407-57225426 MS.gene96621:CDS 25.0%
! GCTATACTAATCCATATATA+AGG - chr6.3:57225480-57225499 None:intergenic 25.0%
! TATACTAAAAAACGGCATAT+CGG - chr6.3:57225043-57225062 None:intergenic 25.0%
! TCAATTTCACAAATTTCAGA+TGG - chr6.3:57225885-57225904 None:intergenic 25.0%
! TGTCTTGATTATATTGGTAT+TGG + chr6.3:57224922-57224941 MS.gene96621:CDS 25.0%
! TTCTTCTTCATCTAAATGTA+AGG - chr6.3:57225751-57225770 None:intergenic 25.0%
! TTGAATGATTCTTGAAATGA+TGG - chr6.3:57224805-57224824 None:intergenic 25.0%
! TTGCAGGATATACTAAAAAA+CGG - chr6.3:57225051-57225070 None:intergenic 25.0%
!! AGTAATATTTCTATCAGCTA+TGG + chr6.3:57226227-57226246 MS.gene96621:CDS 25.0%
!! ATCTGAAATTTGTGAAATTG+AGG + chr6.3:57225884-57225903 MS.gene96621:CDS 25.0%
!! GAAGAATTTGTTTCCAAAAT+CGG - chr6.3:57225675-57225694 None:intergenic 25.0%
!! TAGCACTTTTCTTGATAAAA+AGG - chr6.3:57225650-57225669 None:intergenic 25.0%
!! TTTTCTGTATCAGAATATTG+AGG - chr6.3:57224847-57224866 None:intergenic 25.0%
ATTAGTATAGCGAAAGAGAA+TGG + chr6.3:57225489-57225508 MS.gene96621:CDS 30.0%
CAAGTTCAAATCGATGAAAA+GGG + chr6.3:57225918-57225937 MS.gene96621:CDS 30.0%
CCAAAAGTCAAATTTGATAG+AGG + chr6.3:57226125-57226144 MS.gene96621:CDS 30.0%
GACAAAGACGTCATATAAAA+TGG - chr6.3:57225774-57225793 None:intergenic 30.0%
GAGCAAGATATCCTTATATA+TGG + chr6.3:57225466-57225485 MS.gene96621:CDS 30.0%
GTATCTCTAGTGAAGATTTA+CGG + chr6.3:57226101-57226120 MS.gene96621:CDS 30.0%
TATATAAGGATATCTTGCTC+CGG - chr6.3:57225466-57225485 None:intergenic 30.0%
TGAAATTTGTGAAATTGAGG+AGG + chr6.3:57225887-57225906 MS.gene96621:CDS 30.0%
TTGGAAACAAATTCTTCTGT+AGG + chr6.3:57225678-57225697 MS.gene96621:CDS 30.0%
TTTAGTATATCCTGCAAAAC+AGG + chr6.3:57225054-57225073 MS.gene96621:CDS 30.0%
! AATCGTTTTCCGATATGTTA+AGG - chr6.3:57225158-57225177 None:intergenic 30.0%
! ATGGATTGTTGCATCATATA+TGG + chr6.3:57226246-57226265 MS.gene96621:CDS 30.0%
! ATGTTTGTGAGGTTTCATTT+TGG - chr6.3:57224618-57224637 None:intergenic 30.0%
! TTAGATCAAGTGGATTCATT+AGG + chr6.3:57225990-57226009 MS.gene96621:CDS 30.0%
!! CCTCTATCAAATTTGACTTT+TGG - chr6.3:57226128-57226147 None:intergenic 30.0%
!! GGTTTTGTGTTTTGTGAATT+TGG - chr6.3:57224682-57224701 None:intergenic 30.0%
AATTTGTGAAATTGAGGAGG+TGG + chr6.3:57225890-57225909 MS.gene96621:CDS 35.0%
ACATTGCAACAACATTGATG+AGG - chr6.3:57224643-57224662 None:intergenic 35.0%
AGATAAGTATGCCGATGAAA+AGG + chr6.3:57226274-57226293 MS.gene96621:CDS 35.0%
ATCGGAAAACGATTACTTCA+TGG + chr6.3:57225164-57225183 MS.gene96621:CDS 35.0%
ATGAGTGTTTGGAAAGATTG+AGG - chr6.3:57224761-57224780 None:intergenic 35.0%
ATGTAGGTGTTTAGATCAAG+TGG + chr6.3:57225980-57225999 MS.gene96621:CDS 35.0%
CATTGCAACAACATTGATGA+GGG - chr6.3:57224642-57224661 None:intergenic 35.0%
GATAAGTATGCCGATGAAAA+GGG + chr6.3:57226275-57226294 MS.gene96621:CDS 35.0%
GCAAGTTCAAATCGATGAAA+AGG + chr6.3:57225917-57225936 MS.gene96621:CDS 35.0%
TTAAGCATCCTAACACTGAA+GGG + chr6.3:57226078-57226097 MS.gene96621:CDS 35.0%
TTGAAGACTTTGCTTCTACA+TGG + chr6.3:57225081-57225100 MS.gene96621:CDS 35.0%
! AGAGAATGGTTGGAATGTTT+TGG + chr6.3:57225503-57225522 MS.gene96621:CDS 35.0%
! CCAAAAGACATGGATTGTTT+CGG + chr6.3:57225546-57225565 MS.gene96621:CDS 35.0%
! CTTCAAATTTCCTGTTTTGC+AGG - chr6.3:57225067-57225086 None:intergenic 35.0%
! GAAATGATGGAAGAGATTCA+TGG - chr6.3:57224792-57224811 None:intergenic 35.0%
! TAGTACTCTTCCCTTTTCAT+CGG - chr6.3:57226288-57226307 None:intergenic 35.0%
! TGGTTTGTGAAATGAGTGTT+TGG - chr6.3:57224772-57224791 None:intergenic 35.0%
!!! ATCTTTGGTGTTTTGTTGCT+AGG + chr6.3:57226399-57226418 MS.gene96621:CDS 35.0%
!!! GATGAACTGTTTCTGTGTTT+TGG - chr6.3:57224703-57224722 None:intergenic 35.0%
!!! TACTGCTGCATTAGGTTTTT+TGG + chr6.3:57226355-57226374 MS.gene96621:CDS 35.0%
AAAAGGCAACCAAATCCAGA+AGG - chr6.3:57225633-57225652 None:intergenic 40.0%
AAAGGCAACCAAATCCAGAA+GGG - chr6.3:57225632-57225651 None:intergenic 40.0%
AACGGCATATCGGAAAATTG+AGG - chr6.3:57225033-57225052 None:intergenic 40.0%
AAGACTTTGCTTCTACATGG+TGG + chr6.3:57225084-57225103 MS.gene96621:CDS 40.0%
ACTGTTGTTACTGCTGCATT+AGG + chr6.3:57226347-57226366 MS.gene96621:CDS 40.0%
CAACCTGCAAAATTCGTTGA+AGG + chr6.3:57225813-57225832 MS.gene96621:CDS 40.0%
CCTCTTCATTCAAGAGTAAC+CGG + chr6.3:57225444-57225463 MS.gene96621:CDS 40.0%
CTTAAGCATCCTAACACTGA+AGG + chr6.3:57226077-57226096 MS.gene96621:CDS 40.0%
GAACCTCGTGCAAGAAAAAA+AGG + chr6.3:57225707-57225726 MS.gene96621:CDS 40.0%
GTATAGCGAAAGAGAATGGT+TGG + chr6.3:57225493-57225512 MS.gene96621:CDS 40.0%
GTTAGTTCGTCTGAAAAACG+AGG + chr6.3:57225303-57225322 MS.gene96621:CDS 40.0%
GTTGATTGAATTCTCAGCCT+TGG - chr6.3:57225360-57225379 None:intergenic 40.0%
TAAGCATCCTAACACTGAAG+GGG + chr6.3:57226079-57226098 MS.gene96621:CDS 40.0%
TGCATTAGGACCAAAAGACA+TGG + chr6.3:57225536-57225555 MS.gene96621:CDS 40.0%
! CCGAAACAATCCATGTCTTT+TGG - chr6.3:57225549-57225568 None:intergenic 40.0%
! CTTTGTCAGCAGAGTTTTCA+TGG + chr6.3:57225334-57225353 MS.gene96621:CDS 40.0%
! GAGGTACTTGATTAACTGGT+TGG + chr6.3:57226037-57226056 MS.gene96621:CDS 40.0%
! TCTCCTTCAACGAATTTTGC+AGG - chr6.3:57225819-57225838 None:intergenic 40.0%
! TTGGTTGATGCATGTGCATT+AGG + chr6.3:57225522-57225541 MS.gene96621:CDS 40.0%
!! GTTTTTGGAGAAAACCCTTC+TGG + chr6.3:57225615-57225634 MS.gene96621:CDS 40.0%
!! TCTCATTGCTGACTCGAATT+CGG - chr6.3:57225118-57225137 None:intergenic 40.0%
!!! GTGAGGTTTCATTTTGGCTA+AGG - chr6.3:57224612-57224631 None:intergenic 40.0%
!!! TGATGCTGATTTTGTCGAGA+AGG + chr6.3:57226427-57226446 MS.gene96621:CDS 40.0%
AGAGATACCCCTTCAGTGTT+AGG - chr6.3:57226089-57226108 None:intergenic 45.0%
CCGGTTACTCTTGAATGAAG+AGG - chr6.3:57225447-57225466 None:intergenic 45.0%
CGAACTAACCATCGCTTCTA+CGG - chr6.3:57225292-57225311 None:intergenic 45.0%
GGAGAAAACCCTTCTGGATT+TGG + chr6.3:57225621-57225640 MS.gene96621:CDS 45.0%
TACTGATCAATGATCGTGCG+AGG + chr6.3:57226018-57226037 MS.gene96621:CDS 45.0%
TCAGATGGTTTCGACACACT+TGG - chr6.3:57225870-57225889 None:intergenic 45.0%
! ATTTTGTCGAGAAGGAGAGG+TGG + chr6.3:57226435-57226454 MS.gene96621:CDS 45.0%
! CTGATTTTGTCGAGAAGGAG+AGG + chr6.3:57226432-57226451 MS.gene96621:CDS 45.0%
! GCAAGTTTTTGCACGAGAAC+AGG - chr6.3:57226200-57226219 None:intergenic 45.0%
! GTGCGAGGTACTTGATTAAC+TGG + chr6.3:57226033-57226052 MS.gene96621:CDS 45.0%
! TTGATGAGGGCATGTTTGTG+AGG - chr6.3:57224629-57224648 None:intergenic 45.0%
!! TTCTGAGACGAAGATCGTAG+AGG + chr6.3:57225842-57225861 MS.gene96621:CDS 45.0%
!!! GAAAAGTGCTACGCCGATTT+TGG + chr6.3:57225659-57225678 MS.gene96621:CDS 45.0%
CTTCTACGGCTTCGCTTTCA+TGG - chr6.3:57225278-57225297 None:intergenic 50.0%
! CAGCAGAGTTTTCATGGCCA+AGG + chr6.3:57225340-57225359 MS.gene96621:CDS 50.0%
! CGTGCAAGAAAAAAAGGCGC+AGG + chr6.3:57225713-57225732 MS.gene96621:CDS 50.0%
!!! GCGCCTTTTTTTCTTGCACG+AGG - chr6.3:57225713-57225732 None:intergenic 50.0%
AAGCGAAGCCGTAGAAGCGA+TGG + chr6.3:57225281-57225300 MS.gene96621:CDS 55.0%
! CGCGAAAGTGCGACGACATT+CGG - chr6.3:57224725-57224744 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 57224601 57226496 57224601 ID=MS.gene96621
chr6.3 mRNA 57224601 57226496 57224601 ID=MS.gene96621.t1;Parent=MS.gene96621
chr6.3 exon 57224601 57226496 57224601 ID=MS.gene96621.t1.exon1;Parent=MS.gene96621.t1
chr6.3 CDS 57224601 57226496 57224601 ID=cds.MS.gene96621.t1;Parent=MS.gene96621.t1
Gene Sequence

>MS.gene96621

ATGGACAACCTTAGCCAAAATGAAACCTCACAAACATGCCCTCATCAATGTTGTTGCAATGTCTCAATTTTCAACTCACCAAATTCACAAAACACAAAACCAAAACACAGAAACAGTTCATCCGAATGTCGTCGCACTTTCGCGTCATCGACGACATCCTCAATCTTTCCAAACACTCATTTCACAAACCATGAATCTCTTCCATCATTTCAAGAATCATTCAATGAATTCAATAAAGTTTATCCTCAATATTCTGATACAGAAAAAGTTGATCATGTTAGAGATAAAGAATATTCTCATCTTTCATTTTCAAATCATACTTGTCTTGATTATATTGGTATTGGTCTTTTTTCTTACTCTCAAATGCAGCAATATCATGATTCATCGAAAACAAACATTTCGACTCATGAAAAAACACAAGAATCTCTACCTCAATTTTCCGATATGCCGTTTTTTAGTATATCCTGCAAAACAGGAAATTTGAAGACTTTGCTTCTACATGGTGGAAAAGATTCCGAATTCGAGTCAGCAATGAGAAAAAGAATCATGAATTACCTTAACATATCGGAAAACGATTACTTCATGGTTTTCACTGCTAATAGAACATCAGCTTTCAAACTTGTAGCAGATTGCTACAATTTTCAAAAAAGTAGAAAGCTTTTAACAGTTTATGACCATGAAAGCGAAGCCGTAGAAGCGATGGTTAGTTCGTCTGAAAAACGAGGAGCAAAAGCTTTGTCAGCAGAGTTTTCATGGCCAAGGCTGAGAATTCAATCAACAAAATTGAGGAAAATGATTGTAAGTAAGAGAAAGAAGAAGAAAAATAAGGGTCTTTTTGTTTTGCCTCTTCATTCAAGAGTAACCGGAGCAAGATATCCTTATATATGGATTAGTATAGCGAAAGAGAATGGTTGGAATGTTTTGGTTGATGCATGTGCATTAGGACCAAAAGACATGGATTGTTTCGGTCTTTCACTTTTTCAACCAGATTTTCTTATTTGTTCTTGTTATAAAGTTTTTGGAGAAAACCCTTCTGGATTTGGTTGCCTTTTTATCAAGAAAAGTGCTACGCCGATTTTGGAAACAAATTCTTCTGTAGGAATAGTGAACCTCGTGCAAGAAAAAAAGGCGCAGGATTCAATACTTACCTTACATTTAGATGAAGAAGAACCATTTTATATGACGTCTTTGTCTAACATGATACAAACATCGCAACCTGCAAAATTCGTTGAAGGAGAATCTTCTGAGACGAAGATCGTAGAGGAACCAAGTGTGTCGAAACCATCTGAAATTTGTGAAATTGAGGAGGTGGAAAAGCAAGTTCAAATCGATGAAAAGGGTGTTAAAGAAAGTGATAAAAATGAAAACTTTGATATTAAATGTAGGTGTTTAGATCAAGTGGATTCATTAGGATTGTTACTGATCAATGATCGTGCGAGGTACTTGATTAACTGGTTGGTGAATTCGATGTTGAAGCTTAAGCATCCTAACACTGAAGGGGTATCTCTAGTGAAGATTTACGGTCCAAAAGTCAAATTTGATAGAGGACCTGCAATTGCATTCAATATATTTGATTGGAAAGGCGAAAAAGTTGAACCTGTTCTCGTGCAAAAACTTGCTGATAGAAGTAATATTTCTATCAGCTATGGATTGTTGCATCATATATGGTTTGCAGATAAGTATGCCGATGAAAAGGGAAGAGTACTAAAAGACGAGAAAAAGAAAGATAAAGAAAAAGTTGGAATAACTGTTGTTACTGCTGCATTAGGTTTTTTGGCTAATTTTGAAGATATCTATAATCTTTGGTGTTTTGTTGCTAGGTTTCTTGATGCTGATTTTGTCGAGAAGGAGAGGTGGAGATATACTGCTCTCAATCAGAAAACTGTTGAAGTTTAG
Protein sequence

>MS.gene96621.t1

MDNLSQNETSQTCPHQCCCNVSIFNSPNSQNTKPKHRNSSSECRRTFASSTTSSIFPNTHFTNHESLPSFQESFNEFNKVYPQYSDTEKVDHVRDKEYSHLSFSNHTCLDYIGIGLFSYSQMQQYHDSSKTNISTHEKTQESLPQFSDMPFFSISCKTGNLKTLLLHGGKDSEFESAMRKRIMNYLNISENDYFMVFTANRTSAFKLVADCYNFQKSRKLLTVYDHESEAVEAMVSSSEKRGAKALSAEFSWPRLRIQSTKLRKMIVSKRKKKKNKGLFVLPLHSRVTGARYPYIWISIAKENGWNVLVDACALGPKDMDCFGLSLFQPDFLICSCYKVFGENPSGFGCLFIKKSATPILETNSSVGIVNLVQEKKAQDSILTLHLDEEEPFYMTSLSNMIQTSQPAKFVEGESSETKIVEEPSVSKPSEICEIEEVEKQVQIDEKGVKESDKNENFDIKCRCLDQVDSLGLLLINDRARYLINWLVNSMLKLKHPNTEGVSLVKIYGPKVKFDRGPAIAFNIFDWKGEKVEPVLVQKLADRSNISISYGLLHHIWFADKYADEKGRVLKDEKKKDKEKVGITVVTAALGFLANFEDIYNLWCFVARFLDADFVEKERWRYTALNQKTVEV