AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96765.t1 MTR_1g082690 94.611 501 26 1 1 500 1 501 0.0 978
MS.gene96765.t1 MTR_4g093850 39.354 526 234 9 43 488 29 549 3.12e-125 380
MS.gene96765.t1 MTR_2g009340 37.476 523 235 10 47 482 33 550 6.37e-123 375
MS.gene96765.t1 MTR_8g090220 35.893 521 276 10 29 494 24 541 3.87e-113 348
MS.gene96765.t1 MTR_8g090220 36.820 478 260 8 29 467 24 498 1.55e-112 343
MS.gene96765.t1 MTR_4g093850 39.400 467 198 9 43 429 29 490 1.87e-109 335
MS.gene96765.t1 MTR_2g084595 30.285 492 290 6 48 487 13 503 2.34e-85 276
MS.gene96765.t1 MTR_4g022330 33.673 490 281 9 41 491 18 502 3.28e-84 272
MS.gene96765.t1 MTR_4g095430 31.612 484 281 7 47 490 2 475 7.04e-83 268
MS.gene96765.t1 MTR_2g018750 30.815 503 282 8 42 486 10 504 7.80e-82 266
MS.gene96765.t1 MTR_5g016060 31.959 485 281 8 44 488 26 501 3.52e-81 265
MS.gene96765.t1 MTR_1g106430 31.393 481 269 8 59 491 29 496 4.45e-81 264
MS.gene96765.t1 MTR_1g064360 30.642 483 292 9 42 487 10 486 6.34e-81 262
MS.gene96765.t1 MTR_7g073980 33.263 475 273 11 56 491 31 500 6.63e-81 264
MS.gene96765.t1 MTR_2g048390 33.258 445 238 8 42 429 10 452 1.27e-80 258
MS.gene96765.t1 MTR_1g094850 30.879 489 284 7 49 487 17 501 1.01e-79 260
MS.gene96765.t1 MTR_1g014070 31.838 468 264 8 59 479 28 487 5.66e-78 256
MS.gene96765.t1 MTR_8g078900 30.326 521 287 11 42 488 4 522 1.29e-76 253
MS.gene96765.t1 MTR_5g032780 31.589 516 272 12 59 500 27 535 3.86e-76 251
MS.gene96765.t1 MTR_3g062540 30.444 473 292 8 34 481 1 461 4.35e-76 249
MS.gene96765.t1 MTR_4g134210 31.416 452 273 9 59 478 27 473 5.87e-75 248
MS.gene96765.t1 MTR_5g075640 29.436 479 299 8 44 494 12 479 2.90e-74 245
MS.gene96765.t1 MTR_5g015790 30.901 466 266 8 59 479 28 482 7.30e-73 243
MS.gene96765.t1 MTR_8g069330 32.317 492 261 14 61 500 29 500 1.87e-71 238
MS.gene96765.t1 MTR_1g088885 30.271 479 278 10 59 491 37 505 4.17e-71 238
MS.gene96765.t1 MTR_8g078900 30.426 493 267 11 70 488 2 492 3.33e-70 236
MS.gene96765.t1 MTR_3g062540 30.536 429 262 7 78 481 2 419 1.52e-68 229
MS.gene96765.t1 MTR_2g084595 29.724 434 252 6 48 429 13 445 1.83e-68 226
MS.gene96765.t1 MTR_8g078900 31.448 442 246 9 103 488 42 482 3.66e-67 227
MS.gene96765.t1 MTR_5g075640 29.663 445 275 7 78 494 2 436 5.45e-67 225
MS.gene96765.t1 MTR_7g108290 29.079 478 277 8 59 485 37 503 1.39e-66 227
MS.gene96765.t1 MTR_2g027410 29.847 459 277 8 61 488 29 473 1.98e-63 216
MS.gene96765.t1 MTR_8g078900 30.087 462 247 11 42 429 4 463 1.33e-62 211
MS.gene96765.t1 MTR_5g016060 30.867 392 225 6 137 488 2 387 1.32e-57 199
MS.gene96765.t1 MTR_2g027410 30.170 411 247 6 108 488 1 401 4.87e-57 197
MS.gene96765.t1 MTR_8g078900 31.332 383 206 9 103 429 42 423 1.92e-53 186
MS.gene96765.t1 MTR_4g011530 30.508 295 183 5 209 484 35 326 1.45e-47 171
MS.gene96765.t1 MTR_2g102730 30.314 287 181 5 209 481 13 294 1.43e-45 165
MS.gene96765.t1 MTR_4g074190 25.684 475 286 10 61 481 6 467 1.21e-40 154
MS.gene96765.t1 MTR_4g074190 25.935 428 259 7 103 481 3 421 1.40e-40 153
MS.gene96765.t1 MTR_1g035720 26.819 481 276 14 57 482 2 461 4.46e-39 149
MS.gene96765.t1 MTR_4g045767 26.512 430 271 11 67 466 14 428 5.63e-37 143
MS.gene96765.t1 MTR_4g074190 24.944 449 270 10 61 455 6 441 5.25e-32 128
MS.gene96765.t1 MTR_2g010890 26.016 369 231 8 128 466 2 358 4.05e-29 119
MS.gene96765.t1 MTR_1g105870 30.220 182 116 2 65 236 38 218 5.17e-22 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96765.t1 AT5G64330 34.872 585 240 10 40 488 34 613 2.80e-119 365
MS.gene96765.t1 AT5G64330 34.872 585 240 10 40 488 34 613 3.30e-118 364
MS.gene96765.t1 AT5G64330 34.657 554 221 10 71 488 6 554 3.51e-107 332
MS.gene96765.t1 AT5G10250 34.068 499 289 7 24 485 16 511 2.11e-106 330
MS.gene96765.t1 AT5G10250 34.623 491 282 7 24 485 16 496 9.97e-104 323
MS.gene96765.t1 AT5G03250 31.548 504 283 7 42 487 10 509 6.86e-89 284
MS.gene96765.t1 AT1G30440 31.361 507 286 5 42 487 10 515 5.90e-88 283
MS.gene96765.t1 AT3G08660 33.921 454 260 10 59 487 35 473 8.67e-86 275
MS.gene96765.t1 AT2G30520 31.224 474 298 9 35 486 8 475 3.90e-81 264
MS.gene96765.t1 AT5G67385 31.579 475 279 10 40 478 8 472 6.30e-81 263
MS.gene96765.t1 AT5G13600 31.643 493 274 12 49 487 17 500 2.71e-79 259
MS.gene96765.t1 AT3G08660 33.732 418 241 9 95 487 7 413 5.29e-79 256
MS.gene96765.t1 AT3G08570 32.059 471 270 8 59 487 35 497 6.93e-79 258
MS.gene96765.t1 AT5G67440 31.356 472 289 8 59 498 28 496 1.27e-78 257
MS.gene96765.t1 AT5G67440 31.356 472 289 8 59 498 28 496 1.27e-78 257
MS.gene96765.t1 AT3G44820 28.682 516 303 7 47 498 12 526 3.16e-78 258
MS.gene96765.t1 AT5G48800 31.837 490 276 9 41 491 25 495 3.53e-78 256
MS.gene96765.t1 AT2G14820 30.357 504 289 9 43 495 11 503 3.40e-72 241
MS.gene96765.t1 AT2G14820 30.357 504 289 9 43 495 11 503 3.40e-72 241
MS.gene96765.t1 AT2G30520 31.090 431 270 8 78 486 2 427 1.08e-71 238
MS.gene96765.t1 AT2G30520 31.090 431 270 8 78 486 2 427 1.08e-71 238
MS.gene96765.t1 AT5G67385 31.881 436 252 9 79 478 1 427 2.53e-71 237
MS.gene96765.t1 AT5G67385 31.881 436 252 9 79 478 1 427 2.53e-71 237
MS.gene96765.t1 AT5G67385 31.881 436 252 9 79 478 1 427 2.53e-71 237
MS.gene96765.t1 AT5G67385 31.881 436 252 9 79 478 1 427 2.53e-71 237
MS.gene96765.t1 AT2G47860 29.325 474 274 8 60 485 39 499 4.37e-71 238
MS.gene96765.t1 AT5G67440 30.217 460 286 8 71 498 3 459 1.05e-70 235
MS.gene96765.t1 AT1G67900 30.980 510 271 10 59 499 27 524 1.76e-70 236
MS.gene96765.t1 AT1G67900 30.980 510 271 10 59 499 27 524 1.76e-70 236
MS.gene96765.t1 AT1G67900 30.980 510 271 10 59 499 27 524 1.76e-70 236
MS.gene96765.t1 AT1G67900 30.980 510 271 10 59 499 27 524 1.76e-70 236
MS.gene96765.t1 AT1G67900 30.980 510 271 10 59 499 27 524 1.76e-70 236
MS.gene96765.t1 AT1G67900 30.980 510 271 10 59 499 27 524 1.76e-70 236
MS.gene96765.t1 AT1G03010 29.668 482 280 9 59 488 10 484 1.07e-69 234
MS.gene96765.t1 AT5G66560 28.333 540 298 8 48 498 9 548 1.28e-69 235
MS.gene96765.t1 AT1G03010 29.668 482 280 9 59 488 36 510 1.96e-69 234
MS.gene96765.t1 AT4G31820 29.769 477 272 9 53 488 22 476 2.05e-69 232
MS.gene96765.t1 AT1G03010 29.668 482 280 9 59 488 37 511 2.13e-69 234
MS.gene96765.t1 AT3G49970 33.252 412 250 10 70 472 6 401 4.39e-68 227
MS.gene96765.t1 AT3G49970 33.252 412 250 10 70 472 6 401 4.39e-68 227
MS.gene96765.t1 AT5G47800 29.211 469 293 10 58 493 26 488 7.44e-68 228
MS.gene96765.t1 AT5G47800 29.211 469 293 10 58 493 26 488 7.44e-68 228
MS.gene96765.t1 AT5G47800 29.211 469 293 10 58 493 26 488 7.44e-68 228
MS.gene96765.t1 AT3G08660 32.426 404 233 10 59 437 35 423 5.02e-67 222
MS.gene96765.t1 AT5G47800 29.211 469 293 10 58 493 139 601 6.00e-67 228
MS.gene96765.t1 AT4G37590 29.314 481 293 10 43 491 11 476 1.19e-66 225
MS.gene96765.t1 AT2G47860 27.968 497 274 9 60 485 39 522 5.64e-66 225
MS.gene96765.t1 AT3G50840 29.718 461 292 8 48 481 5 460 1.97e-65 221
MS.gene96765.t1 AT2G23050 31.293 441 248 9 67 479 36 449 3.50e-65 219
MS.gene96765.t1 AT5G66560 27.992 518 284 8 70 498 2 519 3.19e-64 220
MS.gene96765.t1 AT3G26490 28.431 510 282 10 60 499 28 524 3.23e-64 219
MS.gene96765.t1 AT3G26490 28.431 510 282 10 60 499 28 524 3.23e-64 219
MS.gene96765.t1 AT3G26490 28.431 510 282 10 60 499 28 524 3.23e-64 219
MS.gene96765.t1 AT5G66560 30.493 446 258 8 103 498 66 509 2.28e-63 218
MS.gene96765.t1 AT4G31820 29.213 445 252 9 85 488 1 423 3.61e-60 206
MS.gene96765.t1 AT2G47860 29.426 418 234 8 60 429 39 443 6.41e-58 198
MS.gene96765.t1 AT3G50840 28.883 412 264 5 103 488 23 431 1.97e-56 197
MS.gene96765.t1 AT3G50840 28.883 412 264 5 103 488 23 431 1.97e-56 197
MS.gene96765.t1 AT5G66560 28.118 473 247 10 48 429 9 479 1.04e-54 191
MS.gene96765.t1 AT3G26490 29.158 463 245 10 60 450 28 479 4.69e-54 189
MS.gene96765.t1 AT5G03250 28.934 394 219 6 146 481 1 391 5.92e-54 189
MS.gene96765.t1 AT2G47860 27.891 441 234 9 60 429 39 466 6.29e-53 186
MS.gene96765.t1 AT1G50280 27.511 458 285 10 57 470 2 456 9.72e-47 170
MS.gene96765.t1 AT5G48130 27.176 471 281 14 45 480 26 469 1.32e-46 172
MS.gene96765.t1 AT1G50280 28.293 410 250 8 102 470 17 423 2.53e-46 168
MS.gene96765.t1 AT1G52770 32.740 281 172 5 218 482 26 305 3.83e-46 167
MS.gene96765.t1 AT3G15570 31.449 283 173 5 220 482 29 310 8.50e-46 166
MS.gene96765.t1 AT3G19850 27.338 417 241 8 103 470 52 455 6.51e-45 166
MS.gene96765.t1 AT2G47860 26.289 388 231 7 146 485 1 381 2.09e-44 164
MS.gene96765.t1 AT2G47860 26.289 388 231 7 146 485 1 381 2.09e-44 164
MS.gene96765.t1 AT2G23050 30.000 360 199 8 146 479 1 333 2.45e-43 157
MS.gene96765.t1 AT5G17580 27.292 480 298 12 41 486 1 463 7.81e-37 143
MS.gene96765.t1 AT5G17580 27.273 462 289 10 56 486 3 448 9.84e-37 143
MS.gene96765.t1 AT3G22104 24.485 437 277 10 60 465 6 420 1.31e-34 136
MS.gene96765.t1 AT3G03510 26.385 379 253 8 115 486 8 367 4.55e-33 131
MS.gene96765.t1 AT3G22104 23.967 363 227 7 132 465 3 345 3.55e-25 108
MS.gene96765.t1 AT3G22104 23.967 363 227 7 132 465 3 345 3.55e-25 108
MS.gene96765.t1 AT3G22104 23.967 363 227 7 132 465 3 345 3.55e-25 108

Find 72 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTGGAAGATTGTCTATT+TGG 0.174553 1.1:-61217313 None:intergenic
CTATCTTCTTCTGTCAAATA+TGG 0.209690 1.1:-61218795 None:intergenic
CATTTCTAATGTTATCTTCA+TGG 0.244593 1.1:+61217495 MS.gene96765:CDS
GTGTTACAATCTTATGTTCT+TGG 0.259144 1.1:+61218085 MS.gene96765:CDS
TCAACTTTGATTTCAAGTTT+TGG 0.279449 1.1:-61217629 None:intergenic
TAGGTTCCTGTATAGAAAAT+TGG 0.294506 1.1:+61217750 MS.gene96765:CDS
TGTGAGAAATGATTCTGTTT+TGG 0.294906 1.1:-61217474 None:intergenic
TAGAAAATTGGACTACAAAA+TGG 0.300863 1.1:+61217762 MS.gene96765:CDS
TGATGCTTGTCTTACTCCTT+TGG 0.322877 1.1:-61218977 None:intergenic
ACATCATACCTGCCTTTAAC+AGG 0.328556 1.1:-61217925 None:intergenic
GCGCTTCTTGTGACAATCTA+TGG 0.350078 1.1:-61218845 None:intergenic
CAAGAAGTGAATATTTGAAT+AGG 0.369741 1.1:+61217243 MS.gene96765:CDS
ATCCAAATAGACAATCTTCC+AGG 0.378879 1.1:+61217311 MS.gene96765:CDS
TTTAAGGAATCAGCAACTAT+AGG 0.385762 1.1:-61216686 None:intergenic
TGAATAGGCTTGTCTTCAAA+AGG 0.388500 1.1:+61217258 MS.gene96765:CDS
ATGTGTTTATGTGTCACATT+AGG 0.404324 1.1:-61217812 None:intergenic
ACATGTTCACTTGTTCTAGA+AGG 0.404709 1.1:-61218923 None:intergenic
AGCTATTGACATGTACCTTA+AGG 0.420374 1.1:+61218270 MS.gene96765:CDS
TTGTAACTCCTTGGCCCAAT+GGG 0.422828 1.1:-61217558 None:intergenic
TTGTGAATCAATTTCCCATT+GGG 0.436436 1.1:+61217544 MS.gene96765:CDS
TTACTTGATTCAGGTTTGCC+AGG 0.439410 1.1:+61216829 MS.gene96765:intron
AGAAAATGTGTGTAATGTAT+TGG 0.445599 1.1:+61218818 MS.gene96765:CDS
AAATCCTGTTGATAAGTTCA+TGG 0.445770 1.1:-61218898 None:intergenic
TTCCAGCTTTCACTTGCATA+AGG 0.448370 1.1:+61216890 MS.gene96765:CDS
GTGTTGTGTTCAAGATATCT+TGG 0.448558 1.1:+61218009 MS.gene96765:CDS
AAATCAAAGTTGATGCTTGT+TGG 0.453295 1.1:+61217639 MS.gene96765:CDS
CACCTTATGCAAGTGAAAGC+TGG 0.456130 1.1:-61216892 None:intergenic
GAATAGGCTTGTCTTCAAAA+GGG 0.459367 1.1:+61217259 MS.gene96765:CDS
GATATCTTGGTTAAGAATCA+AGG 0.460464 1.1:+61218022 MS.gene96765:CDS
TTGCCCATGAACTTATCAAC+AGG 0.463591 1.1:+61218894 MS.gene96765:CDS
AAAGGAGTAAGACAAGCATC+AGG 0.466683 1.1:+61218979 MS.gene96765:CDS
GCTGCAAAAGTTCACAATGT+TGG 0.475366 1.1:+61218124 MS.gene96765:CDS
ACAATATAATGAAGCTATGT+TGG 0.478289 1.1:-61217399 None:intergenic
TTTCACTAATTGTAACTCCT+TGG 0.480054 1.1:-61217567 None:intergenic
TTGTCAAATTCTGTTACGGT+TGG 0.488790 1.1:+61217357 MS.gene96765:CDS
ATCAATTTCCCATTGGGCCA+AGG 0.494419 1.1:+61217550 MS.gene96765:CDS
AGTTCACAATGTTGGAAGGT+TGG 0.507286 1.1:+61218132 MS.gene96765:CDS
TTACTTCACCTGTTAAAGGC+AGG 0.511487 1.1:+61217917 MS.gene96765:CDS
GTTGCTCAGAAGCAATTGCT+TGG 0.515310 1.1:+61217591 MS.gene96765:CDS
TTAGTTGTCAAATTCTGTTA+CGG 0.519205 1.1:+61217353 MS.gene96765:CDS
ATCATTAGCAGAACTTGCCC+TGG 0.519372 1.1:-61216847 None:intergenic
TAGTTGCTGATTCCTTAAAA+CGG 0.524321 1.1:+61216690 MS.gene96765:CDS
GTTGTGAATCAATTTCCCAT+TGG 0.525573 1.1:+61217543 MS.gene96765:CDS
ATTGTAACTCCTTGGCCCAA+TGG 0.529828 1.1:-61217559 None:intergenic
AATGATTTAATCATACAAGT+TGG 0.533319 1.1:+61216864 MS.gene96765:CDS
AATCCTGTTGATAAGTTCAT+GGG 0.538863 1.1:-61218897 None:intergenic
GGAATGAAATCGGAGTTTGT+AGG 0.540139 1.1:+61217731 MS.gene96765:CDS
GTTATCTATCACAAGTTGCA+AGG 0.555039 1.1:+61218161 MS.gene96765:CDS
GCAACTATAGGAACATTAGC+TGG 0.557389 1.1:-61216674 None:intergenic
CAAAAGTTCACAATGTTGGA+AGG 0.563172 1.1:+61218128 MS.gene96765:CDS
TAGAACAAGTGAACATGTCA+TGG 0.564910 1.1:+61218928 MS.gene96765:CDS
TCACAATGTTGGAAGGTTGG+TGG 0.570684 1.1:+61218135 MS.gene96765:CDS
GTTACGCTTTCCTCCACTCA+AGG 0.570870 1.1:-61216636 None:intergenic
TCAAAGTTGATGCTTGTTGG+TGG 0.571613 1.1:+61217642 MS.gene96765:CDS
AATAGGCTTGTCTTCAAAAG+GGG 0.571861 1.1:+61217260 MS.gene96765:CDS
TACTTGATTCAGGTTTGCCA+GGG 0.586307 1.1:+61216830 MS.gene96765:intron
ATATTCACTTCTTGAGACCA+TGG 0.588159 1.1:-61217234 None:intergenic
TGGTTCTCTAAAGTCACACT+TGG 0.598171 1.1:+61217782 MS.gene96765:CDS
TCATGGACAATGGCAAGTAG+TGG 0.603006 1.1:+61218945 MS.gene96765:CDS
ATGAGTGAAGATATTGAACA+AGG 0.613707 1.1:+61217440 MS.gene96765:CDS
GACTGTGAAAATGCCTTGAG+TGG 0.613781 1.1:+61216623 MS.gene96765:CDS
AGTGAACATGTCATGGACAA+TGG 0.618994 1.1:+61218935 MS.gene96765:CDS
TTATCTATCACAAGTTGCAA+GGG 0.626529 1.1:+61218162 MS.gene96765:CDS
ATGTGTGCTAGAGAGAAGAG+TGG 0.638803 1.1:+61217970 MS.gene96765:CDS
GTAGTGGATCAAATTACCAA+AGG 0.640603 1.1:+61218961 MS.gene96765:CDS
TAATGTGACACATAAACACA+TGG 0.648727 1.1:+61217814 MS.gene96765:CDS
AAGGAGTAAGACAAGCATCA+GGG 0.655380 1.1:+61218980 MS.gene96765:CDS
AATGTTGGAAGGTTGGTGGA+TGG 0.656204 1.1:+61218139 MS.gene96765:CDS
TGTGAAAATGCCTTGAGTGG+AGG 0.661907 1.1:+61216626 MS.gene96765:CDS
CAAATAGACAATCTTCCAGG+TGG 0.702112 1.1:+61217314 MS.gene96765:CDS
TAGCTGGTAGAACAACACAT+CGG 0.769094 1.1:-61216658 None:intergenic
AAGGGATCAGAAGCTCACAG+TGG 0.808993 1.1:+61218180 MS.gene96765:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATATATCTTATAATAAA+AGG - chr1.1:61216920-61216939 None:intergenic 10.0%
!! ATAATATTAGTATAACCTTA+AGG - chr1.1:61218288-61218307 None:intergenic 15.0%
!! TTAAAACTTCAATAAAATCA+CGG - chr1.1:61218529-61218548 None:intergenic 15.0%
!!! TTTTAGTTATATCTACTTAT+TGG + chr1.1:61217031-61217050 MS.gene96765:intron 15.0%
!! AATGATTTAATCATACAAGT+TGG + chr1.1:61216864-61216883 MS.gene96765:CDS 20.0%
!! ATTAAGTTATATATCACCAT+TGG + chr1.1:61217001-61217020 MS.gene96765:intron 20.0%
!! GTAGATATAACTAAAAGTAA+TGG - chr1.1:61217027-61217046 None:intergenic 20.0%
!! TGTTATATAACTAAAAGCAA+TGG - chr1.1:61217057-61217076 None:intergenic 20.0%
!!! TAAATTTAACTCAATTTTGC+AGG + chr1.1:61218767-61218786 MS.gene96765:intron 20.0%
!!! TATAGCTTTTGTAAAAATCA+TGG + chr1.1:61218551-61218570 MS.gene96765:intron 20.0%
! ACAATATAATGAAGCTATGT+TGG - chr1.1:61217402-61217421 None:intergenic 25.0%
! AGAAAATGTGTGTAATGTAT+TGG + chr1.1:61218818-61218837 MS.gene96765:CDS 25.0%
! ATTCAATCTATCAAAAAACG+TGG + chr1.1:61217710-61217729 MS.gene96765:CDS 25.0%
! CAAGAAGTGAATATTTGAAT+AGG + chr1.1:61217243-61217262 MS.gene96765:CDS 25.0%
! CATATGTCTCTATGATTATA+CGG + chr1.1:61218725-61218744 MS.gene96765:intron 25.0%
! CATTTCTAATGTTATCTTCA+TGG + chr1.1:61217495-61217514 MS.gene96765:CDS 25.0%
! GTTTCAATAATGACATGTTT+GGG - chr1.1:61216747-61216766 None:intergenic 25.0%
! TAAAACGGAAAAATCAAAAC+TGG + chr1.1:61216705-61216724 MS.gene96765:CDS 25.0%
! TAGAAAATTGGACTACAAAA+TGG + chr1.1:61217762-61217781 MS.gene96765:CDS 25.0%
! TGTTTCAATAATGACATGTT+TGG - chr1.1:61216748-61216767 None:intergenic 25.0%
! TTAGTTGTCAAATTCTGTTA+CGG + chr1.1:61217353-61217372 MS.gene96765:CDS 25.0%
!!! AAGCATTTTAATCAAACACT+CGG - chr1.1:61217864-61217883 None:intergenic 25.0%
!!! GTTTTGATTTTTCCGTTTTA+AGG - chr1.1:61216705-61216724 None:intergenic 25.0%
!!! TACTTCAAGTTTTATTTGTG+TGG + chr1.1:61218654-61218673 MS.gene96765:intron 25.0%
!!! TCAACTTTGATTTCAAGTTT+TGG - chr1.1:61217632-61217651 None:intergenic 25.0%
!!! TTTTTTACTTCACCTGTTAA+AGG + chr1.1:61217913-61217932 MS.gene96765:CDS 25.0%
AGAGACATATGCAAACAATA+TGG - chr1.1:61218716-61218735 None:intergenic 30.0%
AGCATGTGATGAAAAATGAT+AGG + chr1.1:61218871-61218890 MS.gene96765:CDS 30.0%
ATGAGTGAAGATATTGAACA+AGG + chr1.1:61217440-61217459 MS.gene96765:CDS 30.0%
ATGTCTCATTTACTTGATTC+AGG + chr1.1:61216820-61216839 MS.gene96765:intron 30.0%
ATGTGTTTATGTGTCACATT+AGG - chr1.1:61217815-61217834 None:intergenic 30.0%
CAAAAAACGTGGAATGAAAT+CGG + chr1.1:61217721-61217740 MS.gene96765:CDS 30.0%
CTATCTTCTTCTGTCAAATA+TGG - chr1.1:61218798-61218817 None:intergenic 30.0%
GATATCTTGGTTAAGAATCA+AGG + chr1.1:61218022-61218041 MS.gene96765:CDS 30.0%
GCTATGATATGCTTGAAATT+AGG - chr1.1:61217152-61217171 None:intergenic 30.0%
GTGTTACAATCTTATGTTCT+TGG + chr1.1:61218085-61218104 MS.gene96765:CDS 30.0%
TAACTAAAAGTAATGGCCAA+TGG - chr1.1:61217020-61217039 None:intergenic 30.0%
TAATGTGACACATAAACACA+TGG + chr1.1:61217814-61217833 MS.gene96765:CDS 30.0%
TAGGTTCCTGTATAGAAAAT+TGG + chr1.1:61217750-61217769 MS.gene96765:CDS 30.0%
TTATCTATCACAAGTTGCAA+GGG + chr1.1:61218162-61218181 MS.gene96765:CDS 30.0%
TTGTGAATCAATTTCCCATT+GGG + chr1.1:61217544-61217563 MS.gene96765:CDS 30.0%
TTTAAGGAATCAGCAACTAT+AGG - chr1.1:61216689-61216708 None:intergenic 30.0%
TTTCACTAATTGTAACTCCT+TGG - chr1.1:61217570-61217589 None:intergenic 30.0%
! AAATCCTGTTGATAAGTTCA+TGG - chr1.1:61218901-61218920 None:intergenic 30.0%
! AATCCTGTTGATAAGTTCAT+GGG - chr1.1:61218900-61218919 None:intergenic 30.0%
! AGCTTTTGTAAAAATCATGG+TGG + chr1.1:61218554-61218573 MS.gene96765:intron 30.0%
! GTTTGGTTCAACAATTAGTT+TGG + chr1.1:61218487-61218506 MS.gene96765:intron 30.0%
! TCACAATCTCTACAATTTTG+TGG - chr1.1:61218235-61218254 None:intergenic 30.0%
! TGTAGTCCAATTTTCTATAC+AGG - chr1.1:61217759-61217778 None:intergenic 30.0%
! TGTGAGAAATGATTCTGTTT+TGG - chr1.1:61217477-61217496 None:intergenic 30.0%
! TTCACAGTCAAGAATTTTCA+TGG - chr1.1:61216612-61216631 None:intergenic 30.0%
!! AAATCAAAGTTGATGCTTGT+TGG + chr1.1:61217639-61217658 MS.gene96765:CDS 30.0%
!! ATGAACAAGTTTGAGTTTTC+TGG + chr1.1:61216572-61216591 MS.gene96765:CDS 30.0%
!! TAGTTGCTGATTCCTTAAAA+CGG + chr1.1:61216690-61216709 MS.gene96765:CDS 30.0%
AATAGGCTTGTCTTCAAAAG+GGG + chr1.1:61217260-61217279 MS.gene96765:CDS 35.0%
AATCACAGTCATATTCGAGT+TGG + chr1.1:61218330-61218349 MS.gene96765:intron 35.0%
AGCTATTGACATGTACCTTA+AGG + chr1.1:61218270-61218289 MS.gene96765:CDS 35.0%
ATATTCACTTCTTGAGACCA+TGG - chr1.1:61217237-61217256 None:intergenic 35.0%
ATCCAAATAGACAATCTTCC+AGG + chr1.1:61217311-61217330 MS.gene96765:CDS 35.0%
CAAAAGTTCACAATGTTGGA+AGG + chr1.1:61218128-61218147 MS.gene96765:CDS 35.0%
CCAAACATGCACTTAAAAAC+AGG - chr1.1:61218473-61218492 None:intergenic 35.0%
GAATAGGCTTGTCTTCAAAA+GGG + chr1.1:61217259-61217278 MS.gene96765:CDS 35.0%
GTGTTGTGTTCAAGATATCT+TGG + chr1.1:61218009-61218028 MS.gene96765:CDS 35.0%
GTTATCTATCACAAGTTGCA+AGG + chr1.1:61218161-61218180 MS.gene96765:CDS 35.0%
GTTGTGAATCAATTTCCCAT+TGG + chr1.1:61217543-61217562 MS.gene96765:CDS 35.0%
TAGAACAAGTGAACATGTCA+TGG + chr1.1:61218928-61218947 MS.gene96765:CDS 35.0%
TGAATAGGCTTGTCTTCAAA+AGG + chr1.1:61217258-61217277 MS.gene96765:CDS 35.0%
TGCATACAATCAGTCAAATG+TGG + chr1.1:61218365-61218384 MS.gene96765:intron 35.0%
TGCTTGAAATTAGGAACATG+AGG - chr1.1:61217143-61217162 None:intergenic 35.0%
TTGTCAAATTCTGTTACGGT+TGG + chr1.1:61217357-61217376 MS.gene96765:CDS 35.0%
! ACATGTTCACTTGTTCTAGA+AGG - chr1.1:61218926-61218945 None:intergenic 35.0%
! ATCACAGTCATATTCGAGTT+GGG + chr1.1:61218331-61218350 MS.gene96765:intron 35.0%
! GAGACAGAATTTTCTTCAGT+TGG - chr1.1:61217887-61217906 None:intergenic 35.0%
! TCAAATGTTTTTCTACCACC+TGG - chr1.1:61217332-61217351 None:intergenic 35.0%
!! GTAGTGGATCAAATTACCAA+AGG + chr1.1:61218961-61218980 MS.gene96765:CDS 35.0%
!!! CCTGTTTTTAAGTGCATGTT+TGG + chr1.1:61218470-61218489 MS.gene96765:intron 35.0%
AAAGGAGTAAGACAAGCATC+AGG + chr1.1:61218979-61218998 MS.gene96765:CDS 40.0%
ACATCATACCTGCCTTTAAC+AGG - chr1.1:61217928-61217947 None:intergenic 40.0%
AGTGAACATGTCATGGACAA+TGG + chr1.1:61218935-61218954 MS.gene96765:CDS 40.0%
AGTTCACAATGTTGGAAGGT+TGG + chr1.1:61218132-61218151 MS.gene96765:CDS 40.0%
CAAATAGACAATCTTCCAGG+TGG + chr1.1:61217314-61217333 MS.gene96765:CDS 40.0%
CACCTGGAAGATTGTCTATT+TGG - chr1.1:61217316-61217335 None:intergenic 40.0%
GCAACTATAGGAACATTAGC+TGG - chr1.1:61216677-61216696 None:intergenic 40.0%
GCTGCAAAAGTTCACAATGT+TGG + chr1.1:61218124-61218143 MS.gene96765:CDS 40.0%
GGAATGAAATCGGAGTTTGT+AGG + chr1.1:61217731-61217750 MS.gene96765:CDS 40.0%
TAGCTGGTAGAACAACACAT+CGG - chr1.1:61216661-61216680 None:intergenic 40.0%
TGATGCTTGTCTTACTCCTT+TGG - chr1.1:61218980-61218999 None:intergenic 40.0%
TTACTTCACCTGTTAAAGGC+AGG + chr1.1:61217917-61217936 MS.gene96765:CDS 40.0%
TTCCAGCTTTCACTTGCATA+AGG + chr1.1:61216890-61216909 MS.gene96765:CDS 40.0%
TTGCCCATGAACTTATCAAC+AGG + chr1.1:61218894-61218913 MS.gene96765:CDS 40.0%
! TACTTGATTCAGGTTTGCCA+GGG + chr1.1:61216830-61216849 MS.gene96765:intron 40.0%
! TAGGAACATGAGGTGCTTAT+TGG - chr1.1:61217133-61217152 None:intergenic 40.0%
! TTACTTGATTCAGGTTTGCC+AGG + chr1.1:61216829-61216848 MS.gene96765:intron 40.0%
!! TCAAAGTTGATGCTTGTTGG+TGG + chr1.1:61217642-61217661 MS.gene96765:CDS 40.0%
!! TGGTTCTCTAAAGTCACACT+TGG + chr1.1:61217782-61217801 MS.gene96765:CDS 40.0%
!!! GAGAAGAGTGGTTTTGATGT+TGG + chr1.1:61217982-61218001 MS.gene96765:CDS 40.0%
ACAGGTTTGCGACTTTGACT+TGG - chr1.1:61218455-61218474 None:intergenic 45.0%
ATCAATTTCCCATTGGGCCA+AGG + chr1.1:61217550-61217569 MS.gene96765:CDS 45.0%
ATCATTAGCAGAACTTGCCC+TGG - chr1.1:61216850-61216869 None:intergenic 45.0%
ATGTGTGCTAGAGAGAAGAG+TGG + chr1.1:61217970-61217989 MS.gene96765:CDS 45.0%
ATTGTAACTCCTTGGCCCAA+TGG - chr1.1:61217562-61217581 None:intergenic 45.0%
CACCTTATGCAAGTGAAAGC+TGG - chr1.1:61216895-61216914 None:intergenic 45.0%
CAGCTTTCACTTGCATAAGG+TGG + chr1.1:61216893-61216912 MS.gene96765:intron 45.0%
GACTGTGAAAATGCCTTGAG+TGG + chr1.1:61216623-61216642 MS.gene96765:CDS 45.0%
GCGCTTCTTGTGACAATCTA+TGG - chr1.1:61218848-61218867 None:intergenic 45.0%
GTTGCTCAGAAGCAATTGCT+TGG + chr1.1:61217591-61217610 MS.gene96765:CDS 45.0%
TCACAATGTTGGAAGGTTGG+TGG + chr1.1:61218135-61218154 MS.gene96765:CDS 45.0%
TCATGGACAATGGCAAGTAG+TGG + chr1.1:61218945-61218964 MS.gene96765:CDS 45.0%
TGTGAAAATGCCTTGAGTGG+AGG + chr1.1:61216626-61216645 MS.gene96765:CDS 45.0%
TTGTAACTCCTTGGCCCAAT+GGG - chr1.1:61217561-61217580 None:intergenic 45.0%
! CAGGTTTGCGACTTTGACTT+GGG - chr1.1:61218454-61218473 None:intergenic 45.0%
!! AATGTTGGAAGGTTGGTGGA+TGG + chr1.1:61218139-61218158 MS.gene96765:CDS 45.0%
!! GTTGATTTTCCAGCTTGCCA+TGG + chr1.1:61217217-61217236 MS.gene96765:intron 45.0%
AAGGGATCAGAAGCTCACAG+TGG + chr1.1:61218180-61218199 MS.gene96765:CDS 50.0%
GTTACGCTTTCCTCCACTCA+AGG - chr1.1:61216639-61216658 None:intergenic 50.0%
TTCTTGAGACCATGGCAAGC+TGG - chr1.1:61217229-61217248 None:intergenic 50.0%
ATCGTGGTCGTGCAGCAGTT+TGG + chr1.1:61218401-61218420 MS.gene96765:intron 55.0%
TGGCTGATCCACCTCAATCG+TGG + chr1.1:61218385-61218404 MS.gene96765:intron 55.0%
CTGCACGACCACGATTGAGG+TGG - chr1.1:61218396-61218415 None:intergenic 60.0%
CTGCTGCACGACCACGATTG+AGG - chr1.1:61218399-61218418 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 61216572 61219001 61216572 ID=MS.gene96765
chr1.1 mRNA 61216572 61219001 61216572 ID=MS.gene96765.t1;Parent=MS.gene96765
chr1.1 exon 61216572 61216726 61216572 ID=MS.gene96765.t1.exon1;Parent=MS.gene96765.t1
chr1.1 CDS 61216572 61216726 61216572 ID=cds.MS.gene96765.t1;Parent=MS.gene96765.t1
chr1.1 exon 61216842 61216911 61216842 ID=MS.gene96765.t1.exon2;Parent=MS.gene96765.t1
chr1.1 CDS 61216842 61216911 61216842 ID=cds.MS.gene96765.t1;Parent=MS.gene96765.t1
chr1.1 exon 61217230 61218291 61217230 ID=MS.gene96765.t1.exon3;Parent=MS.gene96765.t1
chr1.1 CDS 61217230 61218291 61217230 ID=cds.MS.gene96765.t1;Parent=MS.gene96765.t1
chr1.1 exon 61218789 61219001 61218789 ID=MS.gene96765.t1.exon4;Parent=MS.gene96765.t1
chr1.1 CDS 61218789 61219001 61218789 ID=cds.MS.gene96765.t1;Parent=MS.gene96765.t1
Gene Sequence

>MS.gene96765

ATGAACAAGTTTGAGTTTTCTGGTGTTGATAAAGCGACCATGAAAATTCTTGACTGTGAAAATGCCTTGAGTGGAGGAAAGCGTAACCGATGTGTTGTTCTACCAGCTAATGTTCCTATAGTTGCTGATTCCTTAAAACGGAAAAATCAAAACTGGTAAACATTTTCAACTTCCCAAACATGTCATTATTGAAACATATATATGCTCATTAATTAGTTTTTGCATCAGCTTGATAAATAAATACTTATATGTCTCATTTACTTGATTCAGGTTTGCCAGGGCAAGTTCTGCTAATGATTTAATCATACAAGTTGGTGATTCCAGCTTTCACTTGCATAAGGTGGACCTTTTATTATAAGATATATATCATTTTTTTATCGTAACATGTTTATCAAATTGTATGCTATGCATCTGATCTTTAATCTAGTTATTAAGTTATATATCACCATTGGCCATTACTTTTAGTTATATCTACTTATTGGCCATTGCTTTTAGTTATATAACATGTTAAATCTACTTATGTACTTTTTTTCTCTGTTTTTACATTACTCATTCACACCAATAAGCACCTCATGTTCCTAATTTCAAGCATATCATAGCATGTAATATTGTTGATATTTTTAACTGTAAATTAATGATTAATTCGTTGATTTTCCAGCTTGCCATGGTCTCAAGAAGTGAATATTTGAATAGGCTTGTCTTCAAAAGGGGAAGTAACATAGAAGACAATAATCATACTATCCAAATAGACAATCTTCCAGGTGGTAGAAAAACATTTGAGTTAGTTGTCAAATTCTGTTACGGTTGGAAATTTGATATGACATCATCCAACATAGCTTCATTATATTGTGCTGCAAATTTCTTAGAAATGAGTGAAGATATTGAACAAGGAAATCTAATTTCCAAAACAGAATCATTTCTCACATTTCTAATGTTATCTTCATGGAAAGACACATTTCGTATACTCAAAAGTTGTGAATCAATTTCCCATTGGGCCAAGGAGTTACAATTAGTGAAACGTTGCTCAGAAGCAATTGCTTGGAAAGCATGTGCAATTCCAAAACTTGAAATCAAAGTTGATGCTTGTTGGTGGTTTGAAGATGTATCACTTCTACGTATAGATCATTTTATTGAAGTGATTCAATCTATCAAAAAACGTGGAATGAAATCGGAGTTTGTAGGTTCCTGTATAGAAAATTGGACTACAAAATGGTTCTCTAAAGTCACACTTGGACTTGATCCTAATGTGACACATAAACACATGGCAATTCAGTTACATAAAGTTTCAACCGAGTGTTTGATTAAAATGCTTCCAACTGAAGAAAATTCTGTCTCTTGCAATTTTTTACTTCACCTGTTAAAGGCAGGTATGATGTTGAAAATCAATCATGAGTTGTTATGTGTGCTAGAGAGAAGAGTGGTTTTGATGTTGGAGCAGTGTTGTGTTCAAGATATCTTGGTTAAGAATCAAGGAGATAAAGATTCTTTGTATGATGTTGATGTTGTTGTTAGAGTGTTACAATCTTATGTTCTTGGCATTTCAAGTAATTCTGCTGCAAAAGTTCACAATGTTGGAAGGTTGGTGGATGGTTATCTATCACAAGTTGCAAGGGATCAGAAGCTCACAGTGGAAAGTTTCAAATTGCTTGTTGAAGTATTGCCACAAAATTGTAGAGATTGTGATGACAATCTCTATAGAGCTATTGACATGTACCTTAAGGTTATACTAATATTATATAATTTATTTTCGAAGCTTTAAATCACAGTCATATTCGAGTTGGGATCTTTGATATTGCATACAATCAGTCAAATGTGGCTGATCCACCTCAATCGTGGTCGTGCAGCAGTTTGGCAAACATAAAAATCTATAATGTTGCGACCCAAGTCAAAGTCGCAAACCTGTTTTTAAGTGCATGTTTGGTTCAACAATTAGTTTGGCAATATCAGAGTGACACCGTGATTTTATTGAAGTTTTAAAGTATAGCTTTTGTAAAAATCATGGTGGCACGCGATGATTCTGCAAAACTCATAGTCTTCTAAACATGCATTAATAAAACTTTGATTATATCATTGCTATATGAGTACTTCAAGTTTTATTTGTGTGGACTGCAGATGCTTAGTTAACTATTTAATTGAATGATCCATATTGTTTGCATATGTCTCTATGATTATACGGTTGTTGAAATCTGAAAACTTAAATTTAACTCAATTTTGCAGGCACATCCATATTTGACAGAAGAAGATAGAGAAAATGTGTGTAATGTATTGGAATACCATAGATTGTCACAAGAAGCGCGTCAGCATGTGATGAAAAATGATAGGTTGCCCATGAACTTATCAACAGGATTTGTCCTTCTAGAACAAGTGAACATGTCATGGACAATGGCAAGTAGTGGATCAAATTACCAAAGGAGTAAGACAAGCATCAGG
Protein sequence

>MS.gene96765.t1

MNKFEFSGVDKATMKILDCENALSGGKRNRCVVLPANVPIVADSLKRKNQNWFARASSANDLIIQVGDSSFHLHKLAMVSRSEYLNRLVFKRGSNIEDNNHTIQIDNLPGGRKTFELVVKFCYGWKFDMTSSNIASLYCAANFLEMSEDIEQGNLISKTESFLTFLMLSSWKDTFRILKSCESISHWAKELQLVKRCSEAIAWKACAIPKLEIKVDACWWFEDVSLLRIDHFIEVIQSIKKRGMKSEFVGSCIENWTTKWFSKVTLGLDPNVTHKHMAIQLHKVSTECLIKMLPTEENSVSCNFLLHLLKAGMMLKINHELLCVLERRVVLMLEQCCVQDILVKNQGDKDSLYDVDVVVRVLQSYVLGISSNSAAKVHNVGRLVDGYLSQVARDQKLTVESFKLLVEVLPQNCRDCDDNLYRAIDMYLKAHPYLTEEDRENVCNVLEYHRLSQEARQHVMKNDRLPMNLSTGFVLLEQVNMSWTMASSGSNYQRSKTSIR