Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96833.t1 | XP_024629520.1 | 91.1 | 224 | 20 | 0 | 4 | 227 | 43 | 266 | 1.30E-92 | 349.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96833.t1 | A0A2K3M0R9 | 69.3 | 225 | 61 | 2 | 4 | 227 | 112 | 329 | 7.4e-66 | 260.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05414 | MS.gene96833 | 0.813361 | 2.66E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene96833 | 0.822422 | 2.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96833.t1 | MTR_4g078510 | 92.517 | 147 | 11 | 0 | 68 | 214 | 36 | 182 | 7.35e-87 | 256 |
| MS.gene96833.t1 | MTR_2g044850 | 86.747 | 83 | 11 | 0 | 145 | 227 | 1 | 83 | 7.70e-37 | 124 |
| MS.gene96833.t1 | MTR_8g467480 | 86.747 | 83 | 11 | 0 | 145 | 227 | 1 | 83 | 1.85e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTCAAATATCTTTA+AGG | 0.125204 | 4.3:+28961499 | MS.gene96833:CDS |
| ATCATCATTGTTTGCATTAG+AGG | 0.184290 | 4.3:-28961741 | None:intergenic |
| TGCCAGATGACTTGACTATT+TGG | 0.234675 | 4.3:+28961393 | MS.gene96833:CDS |
| TACTGCTGGTTCTATATCTA+TGG | 0.241436 | 4.3:+28960320 | MS.gene96833:CDS |
| GAAGAGAAAAGCAGAGCTTT+TGG | 0.280604 | 4.3:+28961310 | MS.gene96833:CDS |
| AAAGGAAAACTATATGGTTT+AGG | 0.310844 | 4.3:+28961440 | MS.gene96833:CDS |
| TGGAACAAGAGCTCTTAAAA+TGG | 0.322348 | 4.3:+28961531 | MS.gene96833:CDS |
| CTATATGGTTTAGGTTCTAT+AGG | 0.343666 | 4.3:+28961449 | MS.gene96833:CDS |
| GAGGCTTCAGCAACATCATT+TGG | 0.358136 | 4.3:-28961722 | None:intergenic |
| TCATTTGGTTCATCTTGAAT+AGG | 0.364266 | 4.3:-28961707 | None:intergenic |
| AATGCTTCGAAGTATACTAT+TGG | 0.390634 | 4.3:+28961476 | MS.gene96833:CDS |
| GGTGTCGCACAAGCAAAGTT+TGG | 0.399282 | 4.3:-28961686 | None:intergenic |
| AAAATGTAGGAGAATGAAAC+AGG | 0.438908 | 4.3:+28960434 | MS.gene96833:intron |
| ACATTCGAAAGGATAAGAAA+TGG | 0.457529 | 4.3:+28960495 | MS.gene96833:CDS |
| TTCCAAATAGTCAAGTCATC+TGG | 0.478583 | 4.3:-28961395 | None:intergenic |
| GCTCTTAAAATGGAAAGAAA+AGG | 0.497086 | 4.3:+28961541 | MS.gene96833:CDS |
| TATAGAACCAGCAGTATGAA+TGG | 0.497172 | 4.3:-28960313 | None:intergenic |
| GCAAATACCTCCTCCACTGC+AGG | 0.498509 | 4.3:-28960464 | None:intergenic |
| TTCTATATCTATGGGTGAGA+AGG | 0.502165 | 4.3:+28960329 | MS.gene96833:CDS |
| ATTTCTTATCCTTTCGAATG+TGG | 0.515569 | 4.3:-28960493 | None:intergenic |
| GGTAGCTCCATTCATACTGC+TGG | 0.517845 | 4.3:+28960306 | MS.gene96833:CDS |
| AGCCACGCCTGCAGTGGAGG+AGG | 0.522287 | 4.3:+28960457 | MS.gene96833:CDS |
| AGGAGCCACGCCTGCAGTGG+AGG | 0.522444 | 4.3:+28960454 | MS.gene96833:CDS |
| CATTCGAAAGGATAAGAAAT+GGG | 0.523660 | 4.3:+28960496 | MS.gene96833:CDS |
| TACCTCCTCCACTGCAGGCG+TGG | 0.527940 | 4.3:-28960459 | None:intergenic |
| CAAGCAAAGTTTGGAGGCAA+TGG | 0.532892 | 4.3:-28961677 | None:intergenic |
| AGTCATCTGGCATATTATGA+TGG | 0.535927 | 4.3:-28961382 | None:intergenic |
| AACAGGAGCCACGCCTGCAG+TGG | 0.538426 | 4.3:+28960451 | MS.gene96833:CDS |
| TGCTCTTTGCCACATTCGAA+AGG | 0.544773 | 4.3:+28960484 | MS.gene96833:CDS |
| GCAAATCGTGCTTCAACTCA+AGG | 0.546016 | 4.3:+28960285 | MS.gene96833:CDS |
| ACTGCTGGTTCTATATCTAT+GGG | 0.548230 | 4.3:+28960321 | MS.gene96833:CDS |
| GGGTGAGAAGGGACGTAGGA+TGG | 0.568413 | 4.3:+28960341 | MS.gene96833:CDS |
| ATCTATGTCTCAAAATCAAG+AGG | 0.574405 | 4.3:+28961337 | MS.gene96833:CDS |
| TCTATATCTATGGGTGAGAA+GGG | 0.583739 | 4.3:+28960330 | MS.gene96833:CDS |
| ATGTCTCAAAATCAAGAGGA+AGG | 0.589667 | 4.3:+28961341 | MS.gene96833:CDS |
| AGATGACTTGACTATTTGGA+AGG | 0.595353 | 4.3:+28961397 | MS.gene96833:CDS |
| GTCGCACAAGCAAAGTTTGG+AGG | 0.597843 | 4.3:-28961683 | None:intergenic |
| CTATGGGTGAGAAGGGACGT+AGG | 0.656674 | 4.3:+28960337 | MS.gene96833:CDS |
| TCTCAAAATCAAGAGGAAGG+AGG | 0.661677 | 4.3:+28961344 | MS.gene96833:CDS |
| TGGAAGGAAGTAGCTCCCAA+AGG | 0.672251 | 4.3:+28961413 | MS.gene96833:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATGATAATATTGATAT+GGG | + | chr4.3:28960584-28960603 | MS.gene96833:intron | 15.0% |
| !! | GAATCAATTAATACATTATT+GGG | + | chr4.3:28960221-28960240 | MS.gene96833:intron | 15.0% |
| !! | TAAAAAAAAAAACCTTATCA+AGG | - | chr4.3:28961118-28961137 | None:intergenic | 15.0% |
| !! | TAGTTATGATAATATTGATA+TGG | + | chr4.3:28960583-28960602 | MS.gene96833:intron | 15.0% |
| !! | TATTAACAATTTGTATTAAC+AGG | + | chr4.3:28959595-28959614 | MS.gene96833:intron | 15.0% |
| !!! | AAATTTTAAGAATTTATCAG+TGG | + | chr4.3:28960254-28960273 | MS.gene96833:intron | 15.0% |
| !!! | CTAAAATTACAGATTTTAAT+TGG | + | chr4.3:28961239-28961258 | MS.gene96833:intron | 15.0% |
| !!! | TTTTTAATAATTAGATTGCT+AGG | + | chr4.3:28960649-28960668 | MS.gene96833:intron | 15.0% |
| !! | GGAATCAATTAATACATTAT+TGG | + | chr4.3:28960220-28960239 | MS.gene96833:intron | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | - | chr4.3:28961220-28961239 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | + | chr4.3:28961278-28961297 | MS.gene96833:intron | 20.0% |
| !!! | AAATTTTCTCATTGAAGTTA+TGG | + | chr4.3:28960409-28960428 | MS.gene96833:intron | 20.0% |
| !!! | AGGTTTTTTTTTTTATTGAG+TGG | + | chr4.3:28961123-28961142 | MS.gene96833:intron | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | + | chr4.3:28961511-28961530 | MS.gene96833:CDS | 20.0% |
| !!! | TGTATTAATTGATTCCATAT+TGG | - | chr4.3:28960216-28960235 | None:intergenic | 20.0% |
| !!! | TTAATTTGTGAACAACATAT+TGG | + | chr4.3:28960386-28960405 | MS.gene96833:intron | 20.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | + | chr4.3:28961440-28961459 | MS.gene96833:CDS | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | + | chr4.3:28961277-28961296 | MS.gene96833:intron | 25.0% |
| ! | GAATTGCTAACATGTTAATT+GGG | + | chr4.3:28960030-28960049 | MS.gene96833:intron | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | + | chr4.3:28961434-28961453 | MS.gene96833:CDS | 25.0% |
| ! | GTTATGGTTTACTGAATTTA+AGG | + | chr4.3:28959719-28959738 | MS.gene96833:intron | 25.0% |
| ! | TAATAATTAGATTGCTAGGT+GGG | + | chr4.3:28960653-28960672 | MS.gene96833:intron | 25.0% |
| ! | TATGATAATATTGATATGGG+AGG | + | chr4.3:28960587-28960606 | MS.gene96833:intron | 25.0% |
| ! | TGAAGTTATGGAAAAAATGT+AGG | + | chr4.3:28960421-28960440 | MS.gene96833:intron | 25.0% |
| ! | TGAATTGCTAACATGTTAAT+TGG | + | chr4.3:28960029-28960048 | MS.gene96833:intron | 25.0% |
| ! | TTAATAATTAGATTGCTAGG+TGG | + | chr4.3:28960652-28960671 | MS.gene96833:intron | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | + | chr4.3:28961499-28961518 | MS.gene96833:CDS | 25.0% |
| !! | TGATTTGGAAGATTAGAAAT+GGG | + | chr4.3:28960622-28960641 | MS.gene96833:intron | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | - | chr4.3:28961431-28961450 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | - | chr4.3:28961432-28961451 | None:intergenic | 25.0% |
| !!! | TTTTGTAGAAGTATTGTACA+TGG | + | chr4.3:28960058-28960077 | MS.gene96833:intron | 25.0% |
| AAAATGTAGGAGAATGAAAC+AGG | + | chr4.3:28960434-28960453 | MS.gene96833:intron | 30.0% | |
| AACCTTATCAAGGAAAACAA+AGG | - | chr4.3:28961108-28961127 | None:intergenic | 30.0% | |
| AATGCTTCGAAGTATACTAT+TGG | + | chr4.3:28961476-28961495 | MS.gene96833:CDS | 30.0% | |
| ACATTCGAAAGGATAAGAAA+TGG | + | chr4.3:28960495-28960514 | MS.gene96833:CDS | 30.0% | |
| ACCTTATCAAGGAAAACAAA+GGG | - | chr4.3:28961107-28961126 | None:intergenic | 30.0% | |
| ATCATCATTGTTTGCATTAG+AGG | - | chr4.3:28961744-28961763 | None:intergenic | 30.0% | |
| ATCTATGTCTCAAAATCAAG+AGG | + | chr4.3:28961337-28961356 | MS.gene96833:CDS | 30.0% | |
| ATGCAAATAATTCCGAATAC+AGG | + | chr4.3:28960172-28960191 | MS.gene96833:intron | 30.0% | |
| ATTTCTTATCCTTTCGAATG+TGG | - | chr4.3:28960496-28960515 | None:intergenic | 30.0% | |
| CATTCGAAAGGATAAGAAAT+GGG | + | chr4.3:28960496-28960515 | MS.gene96833:CDS | 30.0% | |
| CCAAAAACTTACATCAACAA+AGG | - | chr4.3:28959888-28959907 | None:intergenic | 30.0% | |
| CCAAGAGCAAAAACAAAAAT+TGG | + | chr4.3:28961586-28961605 | MS.gene96833:CDS | 30.0% | |
| CCATTAAGAGCAAATTTGAT+TGG | + | chr4.3:28959655-28959674 | MS.gene96833:intron | 30.0% | |
| CGAATCTTAGCATCATATTT+AGG | - | chr4.3:28960087-28960106 | None:intergenic | 30.0% | |
| CTCCCTTGATTTCAAAAATT+TGG | - | chr4.3:28960110-28960129 | None:intergenic | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | + | chr4.3:28961541-28961560 | MS.gene96833:CDS | 30.0% | |
| ! | CCAATCAAATTTGCTCTTAA+TGG | - | chr4.3:28959658-28959677 | None:intergenic | 30.0% |
| ! | CCTTTGTTGATGTAAGTTTT+TGG | + | chr4.3:28959885-28959904 | MS.gene96833:intron | 30.0% |
| ! | CTATATGGTTTAGGTTCTAT+AGG | + | chr4.3:28961449-28961468 | MS.gene96833:CDS | 30.0% |
| ! | GTGATTTGGAAGATTAGAAA+TGG | + | chr4.3:28960621-28960640 | MS.gene96833:intron | 30.0% |
| ! | TCATTTGGTTCATCTTGAAT+AGG | - | chr4.3:28961710-28961729 | None:intergenic | 30.0% |
| !! | GTTTTTACTGTTTTTCTGCA+GGG | + | chr4.3:28960881-28960900 | MS.gene96833:intron | 30.0% |
| !! | TGATTGGTTTATTCCTACAT+GGG | + | chr4.3:28959671-28959690 | MS.gene96833:intron | 30.0% |
| !! | TTCTTTGGGAGTTTTTCTTT+GGG | + | chr4.3:28961061-28961080 | MS.gene96833:intron | 30.0% |
| !! | TTGATTGGTTTATTCCTACA+TGG | + | chr4.3:28959670-28959689 | MS.gene96833:intron | 30.0% |
| !! | TTTCTTTGGGAGTTTTTCTT+TGG | + | chr4.3:28961060-28961079 | MS.gene96833:intron | 30.0% |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | - | chr4.3:28961589-28961608 | None:intergenic | 30.0% |
| !!! | CGCCAAATTTTTGAAATCAA+GGG | + | chr4.3:28960105-28960124 | MS.gene96833:intron | 30.0% |
| !!! | TCGCCAAATTTTTGAAATCA+AGG | + | chr4.3:28960104-28960123 | MS.gene96833:intron | 30.0% |
| AAACTCCCAAAGAAACCAAA+CGG | - | chr4.3:28961055-28961074 | None:intergenic | 35.0% | |
| AAGAAACGAATAGCAGTTGA+TGG | - | chr4.3:28959627-28959646 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | + | chr4.3:28961397-28961416 | MS.gene96833:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | - | chr4.3:28961385-28961404 | None:intergenic | 35.0% | |
| ATGTCTCAAAATCAAGAGGA+AGG | + | chr4.3:28961341-28961360 | MS.gene96833:CDS | 35.0% | |
| CAGTAAACCATAACAACTTC+TGG | - | chr4.3:28959713-28959732 | None:intergenic | 35.0% | |
| TAACACCAACCAAAAAACCA+AGG | - | chr4.3:28960960-28960979 | None:intergenic | 35.0% | |
| TATAGAACCAGCAGTATGAA+TGG | - | chr4.3:28960316-28960335 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | - | chr4.3:28961214-28961233 | None:intergenic | 35.0% | |
| TCTATATCTATGGGTGAGAA+GGG | + | chr4.3:28960330-28960349 | MS.gene96833:CDS | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | + | chr4.3:28961531-28961550 | MS.gene96833:CDS | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | - | chr4.3:28961398-28961417 | None:intergenic | 35.0% | |
| TTCTATATCTATGGGTGAGA+AGG | + | chr4.3:28960329-28960348 | MS.gene96833:CDS | 35.0% | |
| !! | ACTGCTGGTTCTATATCTAT+GGG | + | chr4.3:28960321-28960340 | MS.gene96833:CDS | 35.0% |
| !! | GATTGGTTTATTCCTACATG+GGG | + | chr4.3:28959672-28959691 | MS.gene96833:intron | 35.0% |
| !! | GGTTTTTACTGTTTTTCTGC+AGG | + | chr4.3:28960880-28960899 | MS.gene96833:intron | 35.0% |
| !! | TACTGCTGGTTCTATATCTA+TGG | + | chr4.3:28960320-28960339 | MS.gene96833:CDS | 35.0% |
| !!! | TCCCTTTGTTTTCCTTGATA+AGG | + | chr4.3:28961103-28961122 | MS.gene96833:intron | 35.0% |
| AGGTAGCAATTTGGGTGATT+TGG | + | chr4.3:28960607-28960626 | MS.gene96833:intron | 40.0% | |
| AGTACATCTCTGAGCCAATA+TGG | + | chr4.3:28960199-28960218 | MS.gene96833:intron | 40.0% | |
| AGTAGGTAAAGGTTATGTCG+TGG | + | chr4.3:28960688-28960707 | MS.gene96833:intron | 40.0% | |
| CACTCGTAGTACATACAAGT+CGG | - | chr4.3:28960741-28960760 | None:intergenic | 40.0% | |
| CTCTTGACCAGAAGTTGTTA+TGG | + | chr4.3:28959703-28959722 | MS.gene96833:intron | 40.0% | |
| GATATGGGAGGTAGCAATTT+GGG | + | chr4.3:28960599-28960618 | MS.gene96833:intron | 40.0% | |
| GATGTACTTTGGCCTGTATT+CGG | - | chr4.3:28960187-28960206 | None:intergenic | 40.0% | |
| GGAATGCTTGAATAGATGAC+TGG | + | chr4.3:28960776-28960795 | MS.gene96833:intron | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | + | chr4.3:28961422-28961441 | MS.gene96833:CDS | 40.0% | |
| GTCATCTATTCAAGCATTCC+CGG | - | chr4.3:28960776-28960795 | None:intergenic | 40.0% | |
| TCATCTATTCAAGCATTCCC+GGG | - | chr4.3:28960775-28960794 | None:intergenic | 40.0% | |
| TCTCAAAATCAAGAGGAAGG+AGG | + | chr4.3:28961344-28961363 | MS.gene96833:CDS | 40.0% | |
| TGATATGGGAGGTAGCAATT+TGG | + | chr4.3:28960598-28960617 | MS.gene96833:intron | 40.0% | |
| TGCCAGATGACTTGACTATT+TGG | + | chr4.3:28961393-28961412 | MS.gene96833:CDS | 40.0% | |
| ! | AATTATGGTCGTGGCTGTTT+TGG | - | chr4.3:28961205-28961224 | None:intergenic | 40.0% |
| ! | ATTGGCTCAGAGATGTACTT+TGG | - | chr4.3:28960198-28960217 | None:intergenic | 40.0% |
| ! | CTAGATTCAGAGGTATGATG+TGG | + | chr4.3:28960133-28960152 | MS.gene96833:intron | 40.0% |
| ! | CTTAGCCGTTTGGTTTCTTT+GGG | + | chr4.3:28961047-28961066 | MS.gene96833:intron | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | + | chr4.3:28961310-28961329 | MS.gene96833:CDS | 40.0% |
| ! | TTAGTGTCTGTGTTGTTAGC+AGG | + | chr4.3:28961010-28961029 | MS.gene96833:intron | 40.0% |
| ! | TTTTTCTGCAGGGACTGATT+TGG | + | chr4.3:28960891-28960910 | MS.gene96833:intron | 40.0% |
| !!! | GGTTTTTTGGTTGGTGTTAG+TGG | + | chr4.3:28960961-28960980 | MS.gene96833:intron | 40.0% |
| !!! | TTTGTGCAGCCTTGGTTTTT+TGG | + | chr4.3:28960948-28960967 | MS.gene96833:intron | 40.0% |
| AAGGGAGAAGCTAGATTCAG+AGG | + | chr4.3:28960123-28960142 | MS.gene96833:intron | 45.0% | |
| AGGTAAAGGTTATGTCGTGG+AGG | + | chr4.3:28960691-28960710 | MS.gene96833:intron | 45.0% | |
| CAAGCAAAGTTTGGAGGCAA+TGG | - | chr4.3:28961680-28961699 | None:intergenic | 45.0% | |
| CATCTATTCAAGCATTCCCG+GGG | - | chr4.3:28960774-28960793 | None:intergenic | 45.0% | |
| CGACTTGTATGTACTACGAG+TGG | + | chr4.3:28960739-28960758 | MS.gene96833:intron | 45.0% | |
| CTGCTTCTGTAGCTTGGTTA+GGG | + | chr4.3:28960853-28960872 | MS.gene96833:intron | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | - | chr4.3:28961725-28961744 | None:intergenic | 45.0% | |
| GCAAATCGTGCTTCAACTCA+AGG | + | chr4.3:28960285-28960304 | MS.gene96833:CDS | 45.0% | |
| GTATGTACTACGAGTGGTGT+TGG | + | chr4.3:28960745-28960764 | MS.gene96833:intron | 45.0% | |
| TAAAGGTTATGTCGTGGAGG+TGG | + | chr4.3:28960694-28960713 | MS.gene96833:intron | 45.0% | |
| TGCTCTTTGCCACATTCGAA+AGG | + | chr4.3:28960484-28960503 | MS.gene96833:CDS | 45.0% | |
| ! | GCTTAGCCGTTTGGTTTCTT+TGG | + | chr4.3:28961046-28961065 | MS.gene96833:intron | 45.0% |
| ! | GTTTTCCTGCTTCTGTAGCT+TGG | + | chr4.3:28960847-28960866 | MS.gene96833:intron | 45.0% |
| ! | TGGATTTCAGGCTTCAGGTT+TGG | + | chr4.3:28960981-28961000 | MS.gene96833:intron | 45.0% |
| !! | GGTTGGTGTTAGTGGATTTC+AGG | + | chr4.3:28960969-28960988 | MS.gene96833:intron | 45.0% |
| !! | GTTAGTGGATTTCAGGCTTC+AGG | + | chr4.3:28960976-28960995 | MS.gene96833:intron | 45.0% |
| !! | TGACTTGGTGGAGTAGGTAA+AGG | + | chr4.3:28960677-28960696 | MS.gene96833:intron | 45.0% |
| !!! | GGCTTTTTTGTTTTCCCTGC+TGG | + | chr4.3:28960797-28960816 | MS.gene96833:intron | 45.0% |
| !!! | TGCAGCCTTGGTTTTTTGGT+TGG | + | chr4.3:28960952-28960971 | MS.gene96833:intron | 45.0% |
| !!! | TGTGGCGCTGCTGTTTTTAT+TGG | + | chr4.3:28960820-28960839 | MS.gene96833:intron | 45.0% |
| !!! | TTTTGTTTTCCCTGCTGGTG+TGG | + | chr4.3:28960802-28960821 | MS.gene96833:intron | 45.0% |
| !!! | TAAATTCTTAAAATTTTTAT+CGG | - | chr4.3:28960250-28960269 | None:intergenic | 5.0% |
| AGAGATGCATGTCCCCATGT+AGG | - | chr4.3:28959687-28959706 | None:intergenic | 50.0% | |
| ATGTCGTGGAGGTGGTTGTT+AGG | + | chr4.3:28960702-28960721 | MS.gene96833:intron | 50.0% | |
| CCAAACGCAGTTACCTGTGA+TGG | - | chr4.3:28961152-28961171 | None:intergenic | 50.0% | |
| CCATCACAGGTAACTGCGTT+TGG | + | chr4.3:28961149-28961168 | MS.gene96833:intron | 50.0% | |
| CCTAACCAAGCTACAGAAGC+AGG | - | chr4.3:28960855-28960874 | None:intergenic | 50.0% | |
| CCTGCTTCTGTAGCTTGGTT+AGG | + | chr4.3:28960852-28960871 | MS.gene96833:intron | 50.0% | |
| GAGGTATGATGTGGCAAGAG+AGG | + | chr4.3:28960142-28960161 | MS.gene96833:intron | 50.0% | |
| GATTGCTAGGTGGGATGACT+TGG | + | chr4.3:28960662-28960681 | MS.gene96833:intron | 50.0% | |
| GGTAGCTCCATTCATACTGC+TGG | + | chr4.3:28960306-28960325 | MS.gene96833:CDS | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | - | chr4.3:28961686-28961705 | None:intergenic | 50.0% | |
| TATTGAGTGGCTGCCATCAC+AGG | + | chr4.3:28961136-28961155 | MS.gene96833:intron | 50.0% | |
| TGGAAGGAAGTAGCTCCCAA+AGG | + | chr4.3:28961413-28961432 | MS.gene96833:CDS | 50.0% | |
| TGTTGTTAGCAGGTGGTGTG+TGG | + | chr4.3:28961020-28961039 | MS.gene96833:intron | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | - | chr4.3:28961689-28961708 | None:intergenic | 50.0% |
| ! | GTGTCTGTGTTGTTAGCAGG+TGG | + | chr4.3:28961013-28961032 | MS.gene96833:intron | 50.0% |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | - | chr4.3:28961200-28961219 | None:intergenic | 50.0% |
| !!! | TTGGCCAGCTGCTGGTTTTT+GGG | + | chr4.3:28960910-28960929 | MS.gene96833:intron | 50.0% |
| !!! | TTTGGCCAGCTGCTGGTTTT+TGG | + | chr4.3:28960909-28960928 | MS.gene96833:intron | 50.0% |
| CTATGGGTGAGAAGGGACGT+AGG | + | chr4.3:28960337-28960356 | MS.gene96833:CDS | 55.0% | |
| CTGTAGCTTGGTTAGGGAGC+TGG | + | chr4.3:28960859-28960878 | MS.gene96833:intron | 55.0% | |
| GCAAATACCTCCTCCACTGC+AGG | - | chr4.3:28960467-28960486 | None:intergenic | 55.0% | |
| GTGTGGAAGGCTTAGCCGTT+TGG | + | chr4.3:28961037-28961056 | MS.gene96833:intron | 55.0% | |
| GTTAGCAGGTGGTGTGTGGA+AGG | + | chr4.3:28961024-28961043 | MS.gene96833:intron | 55.0% | |
| TTTGGACAGCTGTCTGCGCA+CGG | + | chr4.3:28961167-28961186 | MS.gene96833:intron | 55.0% | |
| ! | ACGAGTGGTGTTGGAATCCC+CGG | + | chr4.3:28960754-28960773 | MS.gene96833:intron | 55.0% |
| ! | TCAGGCTTCAGGTTTGGCAG+TGG | + | chr4.3:28960987-28961006 | MS.gene96833:intron | 55.0% |
| ! | TGCTAGGTGGGATGACTTGG+TGG | + | chr4.3:28960665-28960684 | MS.gene96833:intron | 55.0% |
| !! | GTGGGATGACTTGGTGGAGT+AGG | + | chr4.3:28960671-28960690 | MS.gene96833:intron | 55.0% |
| !!! | CAGCTGCTGGTTTTTGGGTG+GGG | + | chr4.3:28960915-28960934 | MS.gene96833:intron | 55.0% |
| !!! | CCAGCTGCTGGTTTTTGGGT+GGG | + | chr4.3:28960914-28960933 | MS.gene96833:intron | 55.0% |
| CCCACCCAAAAACCAGCAGC+TGG | - | chr4.3:28960917-28960936 | None:intergenic | 60.0% | |
| CGCTGGTGTTTGTGCAGCCT+TGG | + | chr4.3:28960940-28960959 | MS.gene96833:intron | 60.0% | |
| GGGTGAGAAGGGACGTAGGA+TGG | + | chr4.3:28960341-28960360 | MS.gene96833:CDS | 60.0% | |
| ! | CGAGTGGTGTTGGAATCCCC+GGG | + | chr4.3:28960755-28960774 | MS.gene96833:intron | 60.0% |
| !! | GGACTGATTTGGCCAGCTGC+TGG | + | chr4.3:28960902-28960921 | MS.gene96833:intron | 60.0% |
| !!! | GCCAGCTGCTGGTTTTTGGG+TGG | + | chr4.3:28960913-28960932 | MS.gene96833:intron | 60.0% |
| AACAGCAGCGCCACACCAGC+AGG | - | chr4.3:28960815-28960834 | None:intergenic | 65.0% | |
| AACAGGAGCCACGCCTGCAG+TGG | + | chr4.3:28960451-28960470 | MS.gene96833:CDS | 65.0% | |
| ACAGCAGCGCCACACCAGCA+GGG | - | chr4.3:28960814-28960833 | None:intergenic | 65.0% | |
| TACCTCCTCCACTGCAGGCG+TGG | - | chr4.3:28960462-28960481 | None:intergenic | 65.0% | |
| !!! | GGTTTTTGGGTGGGGTGCGC+TGG | + | chr4.3:28960923-28960942 | MS.gene96833:intron | 65.0% |
| AGCCACGCCTGCAGTGGAGG+AGG | + | chr4.3:28960457-28960476 | MS.gene96833:CDS | 70.0% | |
| AGGAGCCACGCCTGCAGTGG+AGG | + | chr4.3:28960454-28960473 | MS.gene96833:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28959519 | 28961781 | 28959519 | ID=MS.gene96833 |
| chr4.3 | mRNA | 28959519 | 28961781 | 28959519 | ID=MS.gene96833.t1;Parent=MS.gene96833 |
| chr4.3 | exon | 28959519 | 28959528 | 28959519 | ID=MS.gene96833.t1.exon1;Parent=MS.gene96833.t1 |
| chr4.3 | CDS | 28959519 | 28959528 | 28959519 | ID=cds.MS.gene96833.t1;Parent=MS.gene96833.t1 |
| chr4.3 | exon | 28960274 | 28960362 | 28960274 | ID=MS.gene96833.t1.exon2;Parent=MS.gene96833.t1 |
| chr4.3 | CDS | 28960274 | 28960362 | 28960274 | ID=cds.MS.gene96833.t1;Parent=MS.gene96833.t1 |
| chr4.3 | exon | 28960443 | 28960544 | 28960443 | ID=MS.gene96833.t1.exon3;Parent=MS.gene96833.t1 |
| chr4.3 | CDS | 28960443 | 28960544 | 28960443 | ID=cds.MS.gene96833.t1;Parent=MS.gene96833.t1 |
| chr4.3 | exon | 28961299 | 28961781 | 28961299 | ID=MS.gene96833.t1.exon4;Parent=MS.gene96833.t1 |
| chr4.3 | CDS | 28961299 | 28961781 | 28961299 | ID=cds.MS.gene96833.t1;Parent=MS.gene96833.t1 |
| Gene Sequence |
| Protein sequence |
