AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96844

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96844.t1 MTR_7g062310 97.470 593 15 0 1 593 1 593 0.0 1204
MS.gene96844.t1 MTR_7g458880 72.727 550 149 1 45 593 31 580 0.0 853
MS.gene96844.t1 MTR_7g060460 71.739 552 154 2 44 593 30 581 0.0 840
MS.gene96844.t1 MTR_7g058690 71.949 549 153 1 46 593 32 580 0.0 838
MS.gene96844.t1 MTR_7g062250 64.527 592 187 5 7 593 5 578 0.0 798
MS.gene96844.t1 MTR_4g064530 66.851 543 173 4 40 581 37 573 0.0 781
MS.gene96844.t1 MTR_4g064530 66.409 518 165 5 40 554 37 548 0.0 730
MS.gene96844.t1 MTR_3g462760 62.888 547 187 6 47 593 26 556 0.0 714
MS.gene96844.t1 MTR_5g069680 61.314 548 195 7 47 593 27 558 0.0 706
MS.gene96844.t1 MTR_4g015120 58.532 586 214 6 8 593 1 557 0.0 697
MS.gene96844.t1 MTR_5g020600 59.307 548 207 7 47 593 34 566 0.0 684
MS.gene96844.t1 MTR_5g020620 58.212 548 212 6 47 593 30 561 0.0 671
MS.gene96844.t1 MTR_5g081810 56.354 543 219 7 52 593 4 529 0.0 636
MS.gene96844.t1 MTR_5g083360 51.630 552 252 8 48 593 25 567 0.0 594
MS.gene96844.t1 MTR_5g073210 50.727 550 252 6 48 593 26 560 0.0 575
MS.gene96844.t1 MTR_2g008330 47.091 550 280 5 47 593 38 579 0.0 550
MS.gene96844.t1 MTR_8g027375 45.238 588 296 9 14 593 2 571 0.0 545
MS.gene96844.t1 MTR_3g071890 50.685 511 229 10 46 549 32 526 6.52e-177 513
MS.gene96844.t1 MTR_3g101640 45.593 590 295 12 10 593 2 571 7.93e-177 513
MS.gene96844.t1 MTR_4g019225 46.168 561 272 7 48 593 27 572 2.96e-175 509
MS.gene96844.t1 MTR_7g065970 47.406 559 271 8 46 593 24 570 6.52e-174 505
MS.gene96844.t1 MTR_3g101635 45.772 544 278 8 45 583 25 556 1.01e-169 494
MS.gene96844.t1 MTR_7g065980 43.088 557 299 8 46 593 24 571 8.07e-168 489
MS.gene96844.t1 MTR_5g081790 47.143 280 129 7 273 551 159 420 4.32e-75 246
MS.gene96844.t1 MTR_5g081790 60.544 147 51 1 47 186 24 170 2.89e-58 201
MS.gene96844.t1 MTR_8g091390 32.224 571 311 21 47 584 34 561 5.92e-74 247
MS.gene96844.t1 MTR_3g078740 31.070 589 319 20 47 584 26 578 1.70e-62 217
MS.gene96844.t1 MTR_3g078730 31.743 545 324 16 47 584 25 528 2.53e-61 213
MS.gene96844.t1 MTR_3g078700 31.365 542 322 16 48 580 27 527 6.64e-61 211
MS.gene96844.t1 MTR_8g073840 47.778 180 55 3 47 225 30 171 1.05e-47 169
MS.gene96844.t1 MTR_1g090707 28.439 538 349 13 57 593 34 536 8.96e-47 174
MS.gene96844.t1 MTR_3g008580 27.410 529 338 16 36 558 28 516 5.59e-45 168
MS.gene96844.t1 MTR_1g026410 26.397 519 327 14 47 559 29 498 7.17e-43 162
MS.gene96844.t1 MTR_4g101650 26.630 552 367 16 49 593 29 549 1.44e-42 162
MS.gene96844.t1 MTR_3g115050 26.426 526 332 18 42 559 21 499 3.18e-38 148
MS.gene96844.t1 MTR_4g075690 26.953 512 320 17 47 553 30 492 3.53e-38 148
MS.gene96844.t1 MTR_7g058670 72.840 81 21 1 104 183 13 93 1.31e-36 132
MS.gene96844.t1 MTR_4g049390 23.732 552 368 14 47 593 27 530 2.25e-34 137
MS.gene96844.t1 MTR_8g479390 24.908 546 353 16 47 584 31 527 3.87e-34 137
MS.gene96844.t1 MTR_5g018270 25.794 535 344 16 47 578 31 515 7.28e-34 135
MS.gene96844.t1 MTR_3g083430 24.112 535 368 15 48 581 26 523 7.03e-33 133
MS.gene96844.t1 MTR_4g083210 24.549 554 338 18 48 581 26 519 1.09e-32 132
MS.gene96844.t1 MTR_3g083450 24.015 533 365 17 48 578 27 521 2.33e-32 131
MS.gene96844.t1 MTR_8g479380 25.568 528 336 17 40 559 19 497 2.40e-32 131
MS.gene96844.t1 MTR_7g051440 25.046 539 352 18 48 574 30 528 4.63e-32 131
MS.gene96844.t1 MTR_3g083400 24.627 536 364 16 48 581 26 523 6.12e-32 130
MS.gene96844.t1 MTR_3g083440 24.765 533 361 16 48 578 26 520 6.60e-32 130
MS.gene96844.t1 MTR_3g083390 24.765 533 361 16 48 578 26 520 6.85e-32 130
MS.gene96844.t1 MTR_2g088080 24.955 553 360 16 47 593 30 533 1.89e-31 129
MS.gene96844.t1 MTR_4g075690 26.395 466 290 16 47 507 30 447 1.58e-30 125
MS.gene96844.t1 MTR_4g048350 25.000 512 330 20 47 553 27 489 3.06e-30 125
MS.gene96844.t1 MTR_3g083410 24.561 513 347 16 68 578 10 484 1.78e-29 122
MS.gene96844.t1 MTR_4g083190 25.049 515 330 19 65 569 45 513 1.82e-29 123
MS.gene96844.t1 MTR_4g132320 25.737 509 331 12 47 553 31 494 8.42e-28 118
MS.gene96844.t1 MTR_2g088080 24.248 499 323 16 101 593 3 452 8.25e-21 95.9
MS.gene96844.t1 MTR_2g436410 55.224 67 30 0 397 463 6 72 8.86e-19 82.8
MS.gene96844.t1 MTR_3g079660 43.902 82 44 1 503 584 5 84 4.39e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96844.t1 AT5G60020 67.177 588 174 4 12 593 3 577 0.0 837
MS.gene96844.t1 AT5G60020 70.459 545 155 3 55 593 1 545 0.0 822
MS.gene96844.t1 AT2G29130 66.367 556 180 3 40 593 23 573 0.0 798
MS.gene96844.t1 AT5G60020 66.300 546 165 4 12 551 3 535 0.0 761
MS.gene96844.t1 AT2G38080 61.273 550 198 8 44 593 24 558 0.0 702
MS.gene96844.t1 AT5G58910 59.273 550 209 7 47 593 30 567 0.0 677
MS.gene96844.t1 AT5G58910 59.273 550 208 8 47 593 30 566 0.0 674
MS.gene96844.t1 AT5G03260 58.577 548 210 7 47 593 26 557 0.0 669
MS.gene96844.t1 AT5G01190 57.168 579 220 7 16 593 7 558 0.0 653
MS.gene96844.t1 AT5G58910 58.118 542 205 8 55 593 1 523 0.0 643
MS.gene96844.t1 AT5G01190 56.131 579 212 8 16 593 7 544 0.0 628
MS.gene96844.t1 AT1G18140 49.910 557 271 3 44 593 26 581 0.0 596
MS.gene96844.t1 AT2G30210 48.217 589 283 7 8 593 1 570 0.0 594
MS.gene96844.t1 AT5G05390 52.330 558 244 8 43 593 23 565 0.0 591
MS.gene96844.t1 AT2G40370 48.768 568 272 9 38 593 20 580 0.0 575
MS.gene96844.t1 AT5G07130 49.728 551 264 8 49 593 26 569 0.0 559
MS.gene96844.t1 AT5G09360 47.273 550 269 9 48 593 37 569 0.0 547
MS.gene96844.t1 AT2G46570 43.885 556 287 8 46 593 31 569 0.0 528
MS.gene96844.t1 AT3G09220 47.378 534 264 6 49 576 28 550 2.79e-178 516
MS.gene96844.t1 AT5G48100 44.177 541 287 8 48 583 23 553 2.70e-169 493
MS.gene96844.t1 AT5G07130 49.695 491 234 8 109 593 1 484 1.09e-168 489
MS.gene96844.t1 AT5G07130 49.695 491 234 8 109 593 1 484 1.09e-168 489
MS.gene96844.t1 AT5G01050 43.580 553 286 6 51 593 32 568 2.47e-166 486
MS.gene96844.t1 AT5G01040 44.118 544 280 6 58 593 39 566 4.92e-164 481
MS.gene96844.t1 AT2G46570 42.771 498 260 8 104 593 4 484 4.98e-156 456
MS.gene96844.t1 AT3G09220 47.948 463 224 6 120 576 2 453 2.20e-150 441
MS.gene96844.t1 AT4G39830 31.930 570 322 19 47 584 36 571 4.55e-75 250
MS.gene96844.t1 AT5G21105 29.460 611 360 17 3 584 1 569 2.17e-71 241
MS.gene96844.t1 AT5G21100 30.893 560 316 17 62 590 39 558 2.15e-70 238
MS.gene96844.t1 AT5G21105 28.720 578 343 16 3 551 1 538 6.74e-62 214
MS.gene96844.t1 AT4G39830 30.709 508 287 18 108 584 3 476 3.60e-55 194
MS.gene96844.t1 AT4G39830 30.572 507 287 18 109 584 2 474 2.29e-54 192
MS.gene96844.t1 AT4G39830 29.783 507 280 18 108 584 3 463 1.97e-50 181
MS.gene96844.t1 AT4G12420 26.667 525 347 16 49 567 27 519 7.95e-42 159
MS.gene96844.t1 AT4G12420 26.667 525 347 16 49 567 27 519 7.95e-42 159
MS.gene96844.t1 AT1G76160 25.331 529 339 16 47 569 28 506 8.01e-41 156
MS.gene96844.t1 AT1G75790 25.170 588 376 18 16 593 8 541 9.50e-41 155
MS.gene96844.t1 AT5G21105 30.899 356 215 8 232 584 51 378 3.07e-40 151
MS.gene96844.t1 AT5G66920 26.230 549 356 18 47 593 37 538 4.33e-39 151
MS.gene96844.t1 AT5G51480 25.731 513 341 15 49 553 30 510 7.34e-39 151
MS.gene96844.t1 AT1G21860 24.903 514 339 11 47 559 29 496 1.27e-38 149
MS.gene96844.t1 AT5G48450 26.908 524 337 17 49 567 31 513 3.90e-38 149
MS.gene96844.t1 AT5G48450 26.908 524 337 17 49 567 31 513 4.77e-38 149
MS.gene96844.t1 AT1G21850 25.676 518 330 15 47 559 29 496 8.87e-38 147
MS.gene96844.t1 AT4G22010 25.501 549 363 18 47 593 26 530 1.28e-36 144
MS.gene96844.t1 AT1G41830 25.379 528 340 17 47 569 29 507 2.41e-36 143
MS.gene96844.t1 AT4G28090 24.498 498 324 15 68 559 49 500 3.60e-34 137
MS.gene96844.t1 AT1G55570 26.233 507 337 14 48 553 30 500 2.09e-33 135
MS.gene96844.t1 AT3G13390 25.984 508 337 14 48 553 29 499 2.21e-33 134
MS.gene96844.t1 AT4G25240 29.474 285 194 5 49 329 31 312 3.19e-30 125
MS.gene96844.t1 AT4G25240 29.474 285 194 5 49 329 31 312 3.19e-30 125
MS.gene96844.t1 AT1G55560 24.206 504 344 12 51 553 30 496 3.81e-30 125
MS.gene96844.t1 AT4G38420 23.977 513 341 14 47 553 30 499 4.90e-30 124
MS.gene96844.t1 AT3G13400 23.866 507 348 12 48 553 28 497 1.40e-28 120
MS.gene96844.t1 AT3G13400 23.866 507 348 12 48 553 28 497 1.40e-28 120
MS.gene96844.t1 AT4G37160 25.000 548 362 15 49 593 33 534 1.57e-28 120
MS.gene96844.t1 AT2G23630 24.717 530 353 13 65 593 53 537 5.82e-28 118
MS.gene96844.t1 AT2G23630 24.717 530 353 13 65 593 48 532 7.75e-28 118
MS.gene96844.t1 AT4G38420 23.434 495 330 13 47 535 30 481 3.73e-26 112
MS.gene96844.t1 AT4G38420 23.555 467 309 13 47 507 30 454 1.60e-23 104
MS.gene96844.t1 AT4G37160 27.007 274 184 5 49 317 33 295 3.21e-21 97.4

Find 127 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTCTTGCTATGATTCT+AGG 0.176044 7.3:-42824719 None:intergenic
CTCTTTACCATGAGGTTCTT+TGG 0.181622 7.3:-42826360 None:intergenic
CACTACAGCAATTGGTTTCT+TGG 0.184923 7.3:+42825942 MS.gene96844:CDS
AACTGTCAATGGACAATTTC+CGG 0.204561 7.3:+42824694 MS.gene96844:CDS
AAACAAATCCCAATTGTATT+AGG 0.209195 7.3:+42825157 MS.gene96844:CDS
AAGATAGTGTCATTGAATTT+AGG 0.232293 7.3:-42826036 None:intergenic
TCTTGAAGCTATGACAAATT+TGG 0.245270 7.3:-42825887 None:intergenic
GCTGCTACTCTTGTGTTATT+AGG 0.251421 7.3:-42826201 None:intergenic
AAATTTGGCATTTGGTGTTT+TGG 0.262444 7.3:-42825872 None:intergenic
AACTTAGAAGGATCCTTTCT+AGG 0.273886 7.3:-42826528 None:intergenic
TGGCAGAACCTTGAGCTTAA+AGG 0.284189 7.3:-42825671 None:intergenic
GGATCCTTCTAAGTTCAATT+TGG 0.286829 7.3:+42826536 MS.gene96844:CDS
CCAGTGTAGTTGAATTTAAC+AGG 0.289288 7.3:-42826330 None:intergenic
TTCATTGTTGGTCAAGGAAA+TGG 0.299064 7.3:+42826495 MS.gene96844:CDS
CACAAGTTGGGGATTGAAAA+TGG 0.302332 7.3:+42827009 MS.gene96844:CDS
CACACCATCAATGGCCTTCC+AGG 0.308178 7.3:+42825362 MS.gene96844:CDS
CTTAATTTACCTAATACAAT+TGG 0.315786 7.3:-42825166 None:intergenic
CAAAGTGGAGTTGGTGTTGC+AGG 0.318771 7.3:+42826416 MS.gene96844:CDS
AGTACAATGTTTCCCTTCAT+TGG 0.336712 7.3:+42824777 MS.gene96844:CDS
TGAGAAGGACATTGGTGGTT+TGG 0.342545 7.3:-42825840 None:intergenic
TAACTTTGTCCTGGCTGAAT+TGG 0.344083 7.3:-42824995 None:intergenic
TGGCTTAGATCTACTCTTCA+TGG 0.347199 7.3:+42825079 MS.gene96844:CDS
GGTATCATGCACATATTTCA+TGG 0.347980 7.3:+42825059 MS.gene96844:CDS
CTGCCCAAGCACTTCTTACT+TGG 0.354267 7.3:-42824946 None:intergenic
AATTTAACAGGTGGATTAGA+AGG 0.368105 7.3:-42826318 None:intergenic
AACTCCACTTTGGTATTGTA+TGG 0.370330 7.3:-42826405 None:intergenic
TTGCAGGATACAAGTATTCT+TGG 0.375423 7.3:+42826432 MS.gene96844:CDS
CAGTTACAATGCTCTTTGTT+TGG 0.376016 7.3:-42824676 None:intergenic
AGTCATCCATTGCATCTTCA+TGG 0.378694 7.3:+42826462 MS.gene96844:CDS
ATAAATCAAGCAACACAAAC+AGG 0.381784 7.3:+42825314 MS.gene96844:CDS
TCAACCAAATTGAACTTAGA+AGG 0.383489 7.3:-42826540 None:intergenic
TTTGACAACACTACAGCAAT+TGG 0.396024 7.3:+42825934 MS.gene96844:CDS
AAGTACAATGTTGGTTCTAA+AGG 0.397562 7.3:-42825806 None:intergenic
TCTTGAAGTGCACACAAGTT+GGG 0.398428 7.3:+42826997 MS.gene96844:CDS
TGATTGTGTTATGTGCTTTG+TGG 0.400938 7.3:+42824448 MS.gene96844:CDS
GCTATGACAAATTTGGCATT+TGG 0.418044 7.3:-42825880 None:intergenic
AACACTGCTGGTGTTCCATC+TGG 0.429175 7.3:+42826576 MS.gene96844:CDS
ATATATCATGAGCAGGTGTT+TGG 0.430508 7.3:+42826960 MS.gene96844:intron
AGTACAATGTTGGTTCTAAA+GGG 0.432255 7.3:-42825805 None:intergenic
CCAGCAGTGTTCCTTTCAAC+AGG 0.432956 7.3:-42826564 None:intergenic
GGGATTTGTTTGAAAGGATG+AGG 0.445137 7.3:-42825145 None:intergenic
ATCTTGAAGTGCACACAAGT+TGG 0.449598 7.3:+42826996 MS.gene96844:CDS
AAATTGTGTAATACCAATGA+AGG 0.450589 7.3:-42824790 None:intergenic
GCTTGAAGTAAAGCAGTGTT+TGG 0.451339 7.3:-42826252 None:intergenic
ACTGTCAATGGACAATTTCC+GGG 0.454193 7.3:+42824695 MS.gene96844:CDS
AGGACATTGGTGGTTTGGCC+TGG 0.456715 7.3:-42825835 None:intergenic
AAGAGCATTGTAACTGTCAA+TGG 0.456736 7.3:+42824683 MS.gene96844:CDS
TATTAGGTCCTTGACATGCT+TGG 0.457877 7.3:-42826185 None:intergenic
GTGTACAACTTCACAATCAT+AGG 0.459463 7.3:+42825019 MS.gene96844:CDS
TTAATTTACCTAATACAATT+GGG 0.460162 7.3:-42825165 None:intergenic
AGGTGGATTAGAAGGAAAAT+CGG 0.469004 7.3:-42826310 None:intergenic
GTAAGAAGTGCTTGGGCAGA+TGG 0.472599 7.3:+42824950 MS.gene96844:CDS
GGACATTGTGTTATATATGC+AGG 0.472865 7.3:-42824974 None:intergenic
CATTTCTTCAACAAATCAAA+AGG 0.475064 7.3:+42826276 MS.gene96844:CDS
GTGTGAGCATCTGAGGTGTT+AGG 0.476432 7.3:-42825344 None:intergenic
CAACATTTGGGAAGATCAGA+AGG 0.480460 7.3:-42827082 None:intergenic
CTCCACAACTGTTCAGCTAA+AGG 0.481128 7.3:+42825389 MS.gene96844:CDS
AACTTCTTCATTGTTGGTCA+AGG 0.481467 7.3:+42826489 MS.gene96844:CDS
GAACAGTTGTGGAGAGGACC+TGG 0.482040 7.3:-42825380 None:intergenic
TTTAAGCTCAAGGTTCTGCC+AGG 0.483397 7.3:+42825673 MS.gene96844:CDS
TGCAGATACCTTTAAGCTCA+AGG 0.483413 7.3:+42825663 MS.gene96844:intron
ACTTAGAAGGATCCTTTCTA+GGG 0.485413 7.3:-42826527 None:intergenic
CTGGTGTTCCATCTGGTGGA+TGG 0.492079 7.3:+42826583 MS.gene96844:CDS
TGATAACATGGTTAGGGGAG+TGG 0.496612 7.3:+42825267 MS.gene96844:intron
AAAGGATGAGGGAATGGATA+AGG 0.497303 7.3:-42825133 None:intergenic
AGGACCTGGAAGGCCATTGA+TGG 0.497980 7.3:-42825366 None:intergenic
CATGGTAAAGAGTGGAACTA+AGG 0.500017 7.3:+42826371 MS.gene96844:CDS
TCAGATGCTCACACCATCAA+TGG 0.503271 7.3:+42825353 MS.gene96844:CDS
TCGCCAAGTAAGAAGTGCTT+GGG 0.505452 7.3:+42824943 MS.gene96844:CDS
GCTTCAAGACCTTATGCTAC+AGG 0.508249 7.3:+42825901 MS.gene96844:CDS
ACAATTGGGATTTGTTTGAA+AGG 0.508370 7.3:-42825151 None:intergenic
TTCGCCAAGTAAGAAGTGCT+TGG 0.510191 7.3:+42824942 MS.gene96844:CDS
TGGAAACTTTGACCCTAGAA+AGG 0.515071 7.3:+42826515 MS.gene96844:CDS
TACCTTTAGCTGAACAGTTG+TGG 0.515649 7.3:-42825391 None:intergenic
AGATTCCTTGCAGATAATCC+AGG 0.516199 7.3:+42826615 MS.gene96844:CDS
TGTTTGAAAGGATGAGGGAA+TGG 0.517009 7.3:-42825139 None:intergenic
GGATTTGTTTGAAAGGATGA+GGG 0.525005 7.3:-42825144 None:intergenic
CTGCAACACCAACTCCACTT+TGG 0.529500 7.3:-42826415 None:intergenic
GATGCAGGACCTGTAGCATA+AGG 0.529569 7.3:-42825910 None:intergenic
TCATTGAATTTAGGAAGTGT+TGG 0.529839 7.3:-42826027 None:intergenic
CTTGAAGTGCACACAAGTTG+GGG 0.530733 7.3:+42826998 MS.gene96844:CDS
CCTGTTAAATTCAACTACAC+TGG 0.538497 7.3:+42826330 MS.gene96844:CDS
ATTTGGTTGATCCTGTTGAA+AGG 0.541456 7.3:+42826553 MS.gene96844:CDS
TTGTACACATAACTTTGTCC+TGG 0.542194 7.3:-42825004 None:intergenic
TTTACCATGAGGTTCTTTGG+TGG 0.544411 7.3:-42826357 None:intergenic
ATTGATGGTGTGAGCATCTG+AGG 0.546326 7.3:-42825351 None:intergenic
TGTCTTGCATGTGCTAGCTC+TGG 0.547035 7.3:-42824477 None:intergenic
TTAAAACCATGAAGATGCAA+TGG 0.550655 7.3:-42826468 None:intergenic
GGAAGATCAGAAGGTGGAGG+TGG 0.559637 7.3:-42827073 None:intergenic
CTTGCTATGATTCTAGGACC+CGG 0.559664 7.3:-42824713 None:intergenic
ATACAATACCAAAGTGGAGT+TGG 0.567730 7.3:+42826407 MS.gene96844:CDS
ACTGCTGGTGTTCCATCTGG+TGG 0.568021 7.3:+42826579 MS.gene96844:CDS
GGATTGTCCAGGATGGAAAA+CGG 0.570747 7.3:+42827035 MS.gene96844:CDS
TAACATGGTTAGGGGAGTGG+TGG 0.576269 7.3:+42825270 MS.gene96844:intron
GTTGGGGATTGAAAATGGCA+TGG 0.577039 7.3:+42827014 MS.gene96844:CDS
GCCCACCTGGATTATCTGCA+AGG 0.582057 7.3:-42826620 None:intergenic
TTCACAATCATAGGACAAAG+AGG 0.591442 7.3:+42825028 MS.gene96844:CDS
AAGGCAAGCCATCCACCAGA+TGG 0.592109 7.3:-42826591 None:intergenic
CCTGTTGAAAGGAACACTGC+TGG 0.597313 7.3:+42826564 MS.gene96844:CDS
GAAAATGGCATGGATTGTCC+AGG 0.601401 7.3:+42827024 MS.gene96844:CDS
AACTTGTGTGCACTTCAAGA+TGG 0.603600 7.3:-42826994 None:intergenic
ACACAATGTCCAATTCAGCC+AGG 0.605789 7.3:+42824986 MS.gene96844:CDS
AATTGTGTAATACCAATGAA+GGG 0.611522 7.3:-42824789 None:intergenic
CAGCATCAGCATCAACAACA+AGG 0.618558 7.3:-42825771 None:intergenic
ATGGCATGGATTGTCCAGGA+TGG 0.620090 7.3:+42827028 MS.gene96844:CDS
CCTAGAATCATAGCAAGAGA+AGG 0.620406 7.3:+42824719 MS.gene96844:CDS
TTGGGAAGATCAGAAGGTGG+AGG 0.621221 7.3:-42827076 None:intergenic
TTAAGCTCAAGGTTCTGCCA+GGG 0.623008 7.3:+42825674 MS.gene96844:CDS
ATCAGCATCAACAACAAGGA+GGG 0.625793 7.3:-42825767 None:intergenic
AAGAACCTCATGGTAAAGAG+TGG 0.626693 7.3:+42826363 MS.gene96844:CDS
GTGTAGTTGAATTTAACAGG+TGG 0.628022 7.3:-42826327 None:intergenic
GTAGTGTTGTCAAAAGATGC+AGG 0.628447 7.3:-42825925 None:intergenic
ATTATCTGCAAGGAATCTCA+AGG 0.628550 7.3:-42826610 None:intergenic
CAAAACATGTTACAACAACA+AGG 0.636483 7.3:+42824520 MS.gene96844:CDS
AACATTGTACTTATCACACC+AGG 0.637047 7.3:+42825817 MS.gene96844:CDS
TTTGCCATACAATACCAAAG+TGG 0.637822 7.3:+42826401 MS.gene96844:CDS
AACACCACCAAAGAACCTCA+TGG 0.647380 7.3:+42826353 MS.gene96844:CDS
TAGTTCCACTCTTTACCATG+AGG 0.649778 7.3:-42826368 None:intergenic
AACATTCACTTTCAAACACT+AGG 0.651706 7.3:+42825974 MS.gene96844:CDS
TTAGCTGAACAGTTGTGGAG+AGG 0.652791 7.3:-42825386 None:intergenic
AGTTGTGGAGAGGACCTGGA+AGG 0.656665 7.3:-42825376 None:intergenic
TAAATCAAGCAACACAAACA+GGG 0.673294 7.3:+42825315 MS.gene96844:CDS
GGGAAACATTGTACTGAACG+TGG 0.689613 7.3:-42824769 None:intergenic
CATCAGCATCAACAACAAGG+AGG 0.690549 7.3:-42825768 None:intergenic
TGGTGTGATAAGTACAATGT+TGG 0.701717 7.3:-42825815 None:intergenic
TAGGACAAAGAGGAACATTG+TGG 0.704760 7.3:+42825038 MS.gene96844:CDS
CATTTGGGAAGATCAGAAGG+TGG 0.714474 7.3:-42827079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAACTTACATAATT+TGG + chr7.3:42826885-42826904 MS.gene96844:intron 10.0%
!!! AAATTTTGATTAATTTTTTC+AGG + chr7.3:42824912-42824931 MS.gene96844:intron 10.0%
!! AATGAAAATAATCACTAATA+TGG - chr7.3:42825615-42825634 None:intergenic 15.0%
!! TTAATTTACCTAATACAATT+GGG - chr7.3:42825168-42825187 None:intergenic 15.0%
!!! ACATTTTTAATCTAATTTGT+TGG - chr7.3:42825424-42825443 None:intergenic 15.0%
!! CTTAATTTACCTAATACAAT+TGG - chr7.3:42825169-42825188 None:intergenic 20.0%
!! GTTAAAAATTGTTTCATTCA+GGG + chr7.3:42826777-42826796 MS.gene96844:intron 20.0%
!! TAATTAAAGTAATAGAATCG+TGG - chr7.3:42824820-42824839 None:intergenic 20.0%
!! TTGGACATTATTAATGAATT+AGG - chr7.3:42826818-42826837 None:intergenic 20.0%
!!! AACTTACATAATTTGGATTT+TGG + chr7.3:42826892-42826911 MS.gene96844:intron 20.0%
!!! AATTTGTGACATATTTTGAT+TGG - chr7.3:42825193-42825212 None:intergenic 20.0%
!!! ATTAATAATGTCCAACTTTT+TGG + chr7.3:42826823-42826842 MS.gene96844:intron 20.0%
!!! GTATATTAACTTTGATAACA+TGG + chr7.3:42825255-42825274 MS.gene96844:intron 20.0%
! AAACAAATCCCAATTGTATT+AGG + chr7.3:42825157-42825176 MS.gene96844:CDS 25.0%
! AAATTGTGTAATACCAATGA+AGG - chr7.3:42824793-42824812 None:intergenic 25.0%
! AATTGTGTAATACCAATGAA+GGG - chr7.3:42824792-42824811 None:intergenic 25.0%
! AGATTAAAAATGTGTCCTAT+CGG + chr7.3:42825431-42825450 MS.gene96844:intron 25.0%
! ATATGATGTAACCAAAAAGT+TGG - chr7.3:42826837-42826856 None:intergenic 25.0%
! CATTTCTTCAACAAATCAAA+AGG + chr7.3:42826276-42826295 MS.gene96844:CDS 25.0%
! GGTTAAAAATTGTTTCATTC+AGG + chr7.3:42826776-42826795 MS.gene96844:intron 25.0%
! GTCACAAATAAATAAGATCA+TGG - chr7.3:42824583-42824602 None:intergenic 25.0%
! TTGAATGTAATCACATGTAT+TGG - chr7.3:42825477-42825496 None:intergenic 25.0%
!! AAGATAGTGTCATTGAATTT+AGG - chr7.3:42826039-42826058 None:intergenic 25.0%
!! TAACTTTGATAACATGGTTA+GGG + chr7.3:42825261-42825280 MS.gene96844:intron 25.0%
!! TCGTTTTGTCAAACTAATTT+TGG + chr7.3:42825502-42825521 MS.gene96844:intron 25.0%
!! TTAACTTTGATAACATGGTT+AGG + chr7.3:42825260-42825279 MS.gene96844:intron 25.0%
!!! TTGATTAATTTTTTCAGGCA+CGG + chr7.3:42824917-42824936 MS.gene96844:intron 25.0%
AACATTCACTTTCAAACACT+AGG + chr7.3:42825974-42825993 MS.gene96844:CDS 30.0%
AACCAGACTTTACTTATCTA+CGG - chr7.3:42826760-42826779 None:intergenic 30.0%
ATAAATCAAGCAACACAAAC+AGG + chr7.3:42825314-42825333 MS.gene96844:CDS 30.0%
ATCACTAATATGGTTTCGAA+TGG - chr7.3:42825605-42825624 None:intergenic 30.0%
CAAAACATGTTACAACAACA+AGG + chr7.3:42824520-42824539 MS.gene96844:CDS 30.0%
TAAATCAAGCAACACAAACA+GGG + chr7.3:42825315-42825334 MS.gene96844:CDS 30.0%
TCAACCAAATTGAACTTAGA+AGG - chr7.3:42826543-42826562 None:intergenic 30.0%
TCTTGAAGCTATGACAAATT+TGG - chr7.3:42825890-42825909 None:intergenic 30.0%
TTAAAACCATGAAGATGCAA+TGG - chr7.3:42826471-42826490 None:intergenic 30.0%
TTGCAATTTGATCTGTACAA+AGG - chr7.3:42824639-42824658 None:intergenic 30.0%
! AACTTTGATAACATGGTTAG+GGG + chr7.3:42825262-42825281 MS.gene96844:intron 30.0%
! ACAATTGGGATTTGTTTGAA+AGG - chr7.3:42825154-42825173 None:intergenic 30.0%
! TCATTGAATTTAGGAAGTGT+TGG - chr7.3:42826030-42826049 None:intergenic 30.0%
!! AAGTACAATGTTGGTTCTAA+AGG - chr7.3:42825809-42825828 None:intergenic 30.0%
!! AATTTAACAGGTGGATTAGA+AGG - chr7.3:42826321-42826340 None:intergenic 30.0%
!! AGTACAATGTTGGTTCTAAA+GGG - chr7.3:42825808-42825827 None:intergenic 30.0%
!! TTTTTCTTCACAGTTGGTTT+AGG + chr7.3:42826141-42826160 MS.gene96844:CDS 30.0%
!! TTTTTGGGAAGAATGACAAT+AGG - chr7.3:42825106-42825125 None:intergenic 30.0%
!!! AAATTTGGCATTTGGTGTTT+TGG - chr7.3:42825875-42825894 None:intergenic 30.0%
!!! ATTTTTTGTTCTTAACCGTC+CGG + chr7.3:42826709-42826728 MS.gene96844:intron 30.0%
!!! GGTTTTAACTTCTTCATTGT+TGG + chr7.3:42826483-42826502 MS.gene96844:CDS 30.0%
!!! TTTTGGATTTGGTTTTGAGA+AGG - chr7.3:42825858-42825877 None:intergenic 30.0%
AACATTGTACTTATCACACC+AGG + chr7.3:42825817-42825836 MS.gene96844:CDS 35.0%
AACTCCACTTTGGTATTGTA+TGG - chr7.3:42826408-42826427 None:intergenic 35.0%
AACTGTCAATGGACAATTTC+CGG + chr7.3:42824694-42824713 MS.gene96844:CDS 35.0%
AACTTAGAAGGATCCTTTCT+AGG - chr7.3:42826531-42826550 None:intergenic 35.0%
AACTTCTTCATTGTTGGTCA+AGG + chr7.3:42826489-42826508 MS.gene96844:CDS 35.0%
ACTTAGAAGGATCCTTTCTA+GGG - chr7.3:42826530-42826549 None:intergenic 35.0%
AGTACAATGTTTCCCTTCAT+TGG + chr7.3:42824777-42824796 MS.gene96844:CDS 35.0%
ATACAATACCAAAGTGGAGT+TGG + chr7.3:42826407-42826426 MS.gene96844:CDS 35.0%
ATATATCATGAGCAGGTGTT+TGG + chr7.3:42826960-42826979 MS.gene96844:intron 35.0%
ATCCGTAGATAAGTAAAGTC+TGG + chr7.3:42826755-42826774 MS.gene96844:intron 35.0%
ATTATCTGCAAGGAATCTCA+AGG - chr7.3:42826613-42826632 None:intergenic 35.0%
ATTTGGTTGATCCTGTTGAA+AGG + chr7.3:42826553-42826572 MS.gene96844:CDS 35.0%
CAGTTACAATGCTCTTTGTT+TGG - chr7.3:42824679-42824698 None:intergenic 35.0%
CCAGTGTAGTTGAATTTAAC+AGG - chr7.3:42826333-42826352 None:intergenic 35.0%
CCTGTTAAATTCAACTACAC+TGG + chr7.3:42826330-42826349 MS.gene96844:CDS 35.0%
GCTATGACAAATTTGGCATT+TGG - chr7.3:42825883-42825902 None:intergenic 35.0%
GGACATTGTGTTATATATGC+AGG - chr7.3:42824977-42824996 None:intergenic 35.0%
GGATCCTTCTAAGTTCAATT+TGG + chr7.3:42826536-42826555 MS.gene96844:CDS 35.0%
GGTATCATGCACATATTTCA+TGG + chr7.3:42825059-42825078 MS.gene96844:CDS 35.0%
GTGTACAACTTCACAATCAT+AGG + chr7.3:42825019-42825038 MS.gene96844:CDS 35.0%
GTGTAGTTGAATTTAACAGG+TGG - chr7.3:42826330-42826349 None:intergenic 35.0%
TCAAAAAACCAAGCATGTCA+AGG + chr7.3:42826177-42826196 MS.gene96844:CDS 35.0%
TGATTGTGTTATGTGCTTTG+TGG + chr7.3:42824448-42824467 MS.gene96844:CDS 35.0%
TGGTGTGATAAGTACAATGT+TGG - chr7.3:42825818-42825837 None:intergenic 35.0%
TTCACAATCATAGGACAAAG+AGG + chr7.3:42825028-42825047 MS.gene96844:CDS 35.0%
TTCATTGTTGGTCAAGGAAA+TGG + chr7.3:42826495-42826514 MS.gene96844:CDS 35.0%
TTGCAGGATACAAGTATTCT+TGG + chr7.3:42826432-42826451 MS.gene96844:CDS 35.0%
TTGTACACATAACTTTGTCC+TGG - chr7.3:42825007-42825026 None:intergenic 35.0%
TTTGACAACACTACAGCAAT+TGG + chr7.3:42825934-42825953 MS.gene96844:CDS 35.0%
TTTGCCATACAATACCAAAG+TGG + chr7.3:42826401-42826420 MS.gene96844:CDS 35.0%
! CTTAGTAGATATGTTTTCCC+TGG - chr7.3:42825694-42825713 None:intergenic 35.0%
! GGATTTGTTTGAAAGGATGA+GGG - chr7.3:42825147-42825166 None:intergenic 35.0%
! TATTTAAAATGTTGCCCACC+TGG - chr7.3:42826636-42826655 None:intergenic 35.0%
! TTACTTATCTACGGATTACC+TGG - chr7.3:42826751-42826770 None:intergenic 35.0%
!! AAGAGCATTGTAACTGTCAA+TGG + chr7.3:42824683-42824702 MS.gene96844:CDS 35.0%
!! AGGTGGATTAGAAGGAAAAT+CGG - chr7.3:42826313-42826332 None:intergenic 35.0%
!! CTTAAAGGTATCTGCACAAA+TGG - chr7.3:42825659-42825678 None:intergenic 35.0%
!! GTTGATGATATATCATGAGC+AGG + chr7.3:42826953-42826972 MS.gene96844:intron 35.0%
!!! AAGCACTTTTTCTTCACAGT+TGG + chr7.3:42826135-42826154 MS.gene96844:CDS 35.0%
!!! TTTGGTTTTGAGAAGGACAT+TGG - chr7.3:42825851-42825870 None:intergenic 35.0%
AAAGGATGAGGGAATGGATA+AGG - chr7.3:42825136-42825155 None:intergenic 40.0%
AACTTGTGTGCACTTCAAGA+TGG - chr7.3:42826997-42827016 None:intergenic 40.0%
AAGAACCTCATGGTAAAGAG+TGG + chr7.3:42826363-42826382 MS.gene96844:CDS 40.0%
ACTGTCAATGGACAATTTCC+GGG + chr7.3:42824695-42824714 MS.gene96844:CDS 40.0%
AGATTCCTTGCAGATAATCC+AGG + chr7.3:42826615-42826634 MS.gene96844:CDS 40.0%
AGTCATCCATTGCATCTTCA+TGG + chr7.3:42826462-42826481 MS.gene96844:CDS 40.0%
ATCAGCATCAACAACAAGGA+GGG - chr7.3:42825770-42825789 None:intergenic 40.0%
ATCTTGAAGTGCACACAAGT+TGG + chr7.3:42826996-42827015 MS.gene96844:CDS 40.0%
CAACATTTGGGAAGATCAGA+AGG - chr7.3:42827085-42827104 None:intergenic 40.0%
CATGGTAAAGAGTGGAACTA+AGG + chr7.3:42826371-42826390 MS.gene96844:CDS 40.0%
CCTAGAATCATAGCAAGAGA+AGG + chr7.3:42824719-42824738 MS.gene96844:CDS 40.0%
CTCTTTACCATGAGGTTCTT+TGG - chr7.3:42826363-42826382 None:intergenic 40.0%
GCTTGAAGTAAAGCAGTGTT+TGG - chr7.3:42826255-42826274 None:intergenic 40.0%
GTAGTGTTGTCAAAAGATGC+AGG - chr7.3:42825928-42825947 None:intergenic 40.0%
TAACTTTGTCCTGGCTGAAT+TGG - chr7.3:42824998-42825017 None:intergenic 40.0%
TACCTTTAGCTGAACAGTTG+TGG - chr7.3:42825394-42825413 None:intergenic 40.0%
TAGGACAAAGAGGAACATTG+TGG + chr7.3:42825038-42825057 MS.gene96844:CDS 40.0%
TAGTTCCACTCTTTACCATG+AGG - chr7.3:42826371-42826390 None:intergenic 40.0%
TATTAGGTCCTTGACATGCT+TGG - chr7.3:42826188-42826207 None:intergenic 40.0%
TCTTGAAGTGCACACAAGTT+GGG + chr7.3:42826997-42827016 MS.gene96844:CDS 40.0%
TGCAGATACCTTTAAGCTCA+AGG + chr7.3:42825663-42825682 MS.gene96844:intron 40.0%
TGGAAACTTTGACCCTAGAA+AGG + chr7.3:42826515-42826534 MS.gene96844:CDS 40.0%
TGGCTTAGATCTACTCTTCA+TGG + chr7.3:42825079-42825098 MS.gene96844:CDS 40.0%
TGTCAGTGTTAAAGACCGAT+AGG - chr7.3:42825449-42825468 None:intergenic 40.0%
TGTTTGAAAGGATGAGGGAA+TGG - chr7.3:42825142-42825161 None:intergenic 40.0%
TTTACCATGAGGTTCTTTGG+TGG - chr7.3:42826360-42826379 None:intergenic 40.0%
! CACAAGTTGGGGATTGAAAA+TGG + chr7.3:42827009-42827028 MS.gene96844:CDS 40.0%
! CACTACAGCAATTGGTTTCT+TGG + chr7.3:42825942-42825961 MS.gene96844:CDS 40.0%
! CCTTCTCTTGCTATGATTCT+AGG - chr7.3:42824722-42824741 None:intergenic 40.0%
! GCTGCTACTCTTGTGTTATT+AGG - chr7.3:42826204-42826223 None:intergenic 40.0%
! GGGATTTGTTTGAAAGGATG+AGG - chr7.3:42825148-42825167 None:intergenic 40.0%
! TGGATAAGGCACATGCTTTT+TGG - chr7.3:42825122-42825141 None:intergenic 40.0%
!! GAAGAAAAAGTGCTTGTCGA+CGG - chr7.3:42826130-42826149 None:intergenic 40.0%
!! GGATAAGGCACATGCTTTTT+GGG - chr7.3:42825121-42825140 None:intergenic 40.0%
!!! ACGGTTTTTGGAACTTTTGC+TGG - chr7.3:42826111-42826130 None:intergenic 40.0%
!!! CGGTTTTTGGAACTTTTGCT+GGG - chr7.3:42826110-42826129 None:intergenic 40.0%
!!! GGCATTTGGTGTTTTGGATT+TGG - chr7.3:42825869-42825888 None:intergenic 40.0%
AACACCACCAAAGAACCTCA+TGG + chr7.3:42826353-42826372 MS.gene96844:CDS 45.0%
ACACAATGTCCAATTCAGCC+AGG + chr7.3:42824986-42825005 MS.gene96844:CDS 45.0%
CAGCATCAGCATCAACAACA+AGG - chr7.3:42825774-42825793 None:intergenic 45.0%
CATCAGCATCAACAACAAGG+AGG - chr7.3:42825771-42825790 None:intergenic 45.0%
CATTTGGGAAGATCAGAAGG+TGG - chr7.3:42827082-42827101 None:intergenic 45.0%
CTCCACAACTGTTCAGCTAA+AGG + chr7.3:42825389-42825408 MS.gene96844:CDS 45.0%
CTTGAAGTGCACACAAGTTG+GGG + chr7.3:42826998-42827017 MS.gene96844:CDS 45.0%
GCTTCAAGACCTTATGCTAC+AGG + chr7.3:42825901-42825920 MS.gene96844:CDS 45.0%
GGATTGTCCAGGATGGAAAA+CGG + chr7.3:42827035-42827054 MS.gene96844:CDS 45.0%
GGGAAACATTGTACTGAACG+TGG - chr7.3:42824772-42824791 None:intergenic 45.0%
GTTGGGGATTGAAAATGGCA+TGG + chr7.3:42827014-42827033 MS.gene96844:CDS 45.0%
TCAGATGCTCACACCATCAA+TGG + chr7.3:42825353-42825372 MS.gene96844:CDS 45.0%
TCCTTGCAGATAATCCAGGT+GGG + chr7.3:42826619-42826638 MS.gene96844:intron 45.0%
TGATAACATGGTTAGGGGAG+TGG + chr7.3:42825267-42825286 MS.gene96844:intron 45.0%
TGATGTGTCAGTGTTGTGTC+TGG + chr7.3:42825528-42825547 MS.gene96844:intron 45.0%
TGGCAGAACCTTGAGCTTAA+AGG - chr7.3:42825674-42825693 None:intergenic 45.0%
TTAAGCTCAAGGTTCTGCCA+GGG + chr7.3:42825674-42825693 MS.gene96844:CDS 45.0%
TTAGCTGAACAGTTGTGGAG+AGG - chr7.3:42825389-42825408 None:intergenic 45.0%
TTCCTTGCAGATAATCCAGG+TGG + chr7.3:42826618-42826637 MS.gene96844:intron 45.0%
TTTAAGCTCAAGGTTCTGCC+AGG + chr7.3:42825673-42825692 MS.gene96844:CDS 45.0%
! AAGTGCTTGTCGACGGTTTT+TGG - chr7.3:42826123-42826142 None:intergenic 45.0%
! GAAAATGGCATGGATTGTCC+AGG + chr7.3:42827024-42827043 MS.gene96844:CDS 45.0%
! TGAGAAGGACATTGGTGGTT+TGG - chr7.3:42825843-42825862 None:intergenic 45.0%
!! ATTGATGGTGTGAGCATCTG+AGG - chr7.3:42825354-42825373 None:intergenic 45.0%
!! CTTGCTATGATTCTAGGACC+CGG - chr7.3:42824716-42824735 None:intergenic 45.0%
!! TCGCCAAGTAAGAAGTGCTT+GGG + chr7.3:42824943-42824962 MS.gene96844:CDS 45.0%
!! TTCGCCAAGTAAGAAGTGCT+TGG + chr7.3:42824942-42824961 MS.gene96844:CDS 45.0%
!!! GGTTTTGAGAAGGACATTGG+TGG - chr7.3:42825848-42825867 None:intergenic 45.0%
!!! ATATTTATTGATTAAAATAA+TGG - chr7.3:42826666-42826685 None:intergenic 5.0%
AACACTGCTGGTGTTCCATC+TGG + chr7.3:42826576-42826595 MS.gene96844:CDS 50.0%
CCAGCAGTGTTCCTTTCAAC+AGG - chr7.3:42826567-42826586 None:intergenic 50.0%
CCTGTTGAAAGGAACACTGC+TGG + chr7.3:42826564-42826583 MS.gene96844:CDS 50.0%
CTGCAACACCAACTCCACTT+TGG - chr7.3:42826418-42826437 None:intergenic 50.0%
CTGCCCAAGCACTTCTTACT+TGG - chr7.3:42824949-42824968 None:intergenic 50.0%
GATGCAGGACCTGTAGCATA+AGG - chr7.3:42825913-42825932 None:intergenic 50.0%
TAACATGGTTAGGGGAGTGG+TGG + chr7.3:42825270-42825289 MS.gene96844:intron 50.0%
TGTCTTGCATGTGCTAGCTC+TGG - chr7.3:42824480-42824499 None:intergenic 50.0%
TTGGGAAGATCAGAAGGTGG+AGG - chr7.3:42827079-42827098 None:intergenic 50.0%
! ATGGCATGGATTGTCCAGGA+TGG + chr7.3:42827028-42827047 MS.gene96844:CDS 50.0%
! GTGTGAGCATCTGAGGTGTT+AGG - chr7.3:42825347-42825366 None:intergenic 50.0%
!! CAAAGTGGAGTTGGTGTTGC+AGG + chr7.3:42826416-42826435 MS.gene96844:CDS 50.0%
!! GTAAGAAGTGCTTGGGCAGA+TGG + chr7.3:42824950-42824969 MS.gene96844:CDS 50.0%
AAGGCAAGCCATCCACCAGA+TGG - chr7.3:42826594-42826613 None:intergenic 55.0%
ACTGCTGGTGTTCCATCTGG+TGG + chr7.3:42826579-42826598 MS.gene96844:CDS 55.0%
AGGACCTGGAAGGCCATTGA+TGG - chr7.3:42825369-42825388 None:intergenic 55.0%
AGTTGTGGAGAGGACCTGGA+AGG - chr7.3:42825379-42825398 None:intergenic 55.0%
CACACCATCAATGGCCTTCC+AGG + chr7.3:42825362-42825381 MS.gene96844:CDS 55.0%
CTGGTGTTCCATCTGGTGGA+TGG + chr7.3:42826583-42826602 MS.gene96844:CDS 55.0%
GAACAGTTGTGGAGAGGACC+TGG - chr7.3:42825383-42825402 None:intergenic 55.0%
GCCCACCTGGATTATCTGCA+AGG - chr7.3:42826623-42826642 None:intergenic 55.0%
GGAAGATCAGAAGGTGGAGG+TGG - chr7.3:42827076-42827095 None:intergenic 55.0%
TACCTGGCTCCTTGTCCTCT+GGG - chr7.3:42826735-42826754 None:intergenic 55.0%
TTACCTGGCTCCTTGTCCTC+TGG - chr7.3:42826736-42826755 None:intergenic 55.0%
! AGGACATTGGTGGTTTGGCC+TGG - chr7.3:42825838-42825857 None:intergenic 55.0%
!! GATTGCGCCGTTTTCCATCC+TGG - chr7.3:42827045-42827064 None:intergenic 55.0%
TTCTTAACCGTCCGGCCCAG+AGG + chr7.3:42826717-42826736 MS.gene96844:intron 60.0%
TCCTTGTCCTCTGGGCCGGA+CGG - chr7.3:42826727-42826746 None:intergenic 65.0%
TGGCTCCTTGTCCTCTGGGC+CGG - chr7.3:42826731-42826750 None:intergenic 65.0%
ACCGTCCGGCCCAGAGGACA+AGG + chr7.3:42826723-42826742 MS.gene96844:intron 70.0%
GGCCCAGAGGACAAGGAGCC+AGG + chr7.3:42826730-42826749 MS.gene96844:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42824402 42827105 42824402 ID=MS.gene96844
chr7.3 mRNA 42824402 42827105 42824402 ID=MS.gene96844.t1;Parent=MS.gene96844
chr7.3 exon 42824402 42824557 42824402 ID=MS.gene96844.t1.exon1;Parent=MS.gene96844.t1
chr7.3 CDS 42824402 42824557 42824402 ID=cds.MS.gene96844.t1;Parent=MS.gene96844.t1
chr7.3 exon 42824647 42824798 42824647 ID=MS.gene96844.t1.exon2;Parent=MS.gene96844.t1
chr7.3 CDS 42824647 42824798 42824647 ID=cds.MS.gene96844.t1;Parent=MS.gene96844.t1
chr7.3 exon 42824934 42825178 42824934 ID=MS.gene96844.t1.exon3;Parent=MS.gene96844.t1
chr7.3 CDS 42824934 42825178 42824934 ID=cds.MS.gene96844.t1;Parent=MS.gene96844.t1
chr7.3 exon 42825282 42825410 42825282 ID=MS.gene96844.t1.exon4;Parent=MS.gene96844.t1
chr7.3 CDS 42825282 42825410 42825282 ID=cds.MS.gene96844.t1;Parent=MS.gene96844.t1
chr7.3 exon 42825668 42826636 42825668 ID=MS.gene96844.t1.exon5;Parent=MS.gene96844.t1
chr7.3 CDS 42825668 42826636 42825668 ID=cds.MS.gene96844.t1;Parent=MS.gene96844.t1
chr7.3 exon 42826975 42827105 42826975 ID=MS.gene96844.t1.exon6;Parent=MS.gene96844.t1
chr7.3 CDS 42826975 42827105 42826975 ID=cds.MS.gene96844.t1;Parent=MS.gene96844.t1
Gene Sequence

>MS.gene96844

ATGGATTTTGCTTATATCAAAATGTCAAGCTTCATGAGAGCTATGTTGATTGTGTTATGTGCTTTGTGGATATTGCCAGAGCTAGCACATGCAAGACATGTTAGAACAACAAGTCATGCAAAACATGTTACAACAACAAGGCATTACAAATTTAACGTATGTGTATTGCATTTCATTACCATGATCTTATTTATTTGTGACAAAAAAATGCATTCAATTCAATTTTTCAATTTTCCTTTGTACAGATCAAATTGCAAAATGTCACGAGACTTTGCCAAACAAAGAGCATTGTAACTGTCAATGGACAATTTCCGGGTCCTAGAATCATAGCAAGAGAAGGCGACAGAGTCATCGTGAAAGTTGTTAACCACGTTCAGTACAATGTTTCCCTTCATTGGTATTACACAATTTATTTCCACGATTCTATTACTTTAATTACTATTTTACACAAGCATTCAATCATACTTAGTATAATTTTCTAAAATGTTTTTACACTGTCAGTATATACTTAAATTTTGATTAATTTTTTCAGGCACGGAATTCGCCAAGTAAGAAGTGCTTGGGCAGATGGACCTGCATATATAACACAATGTCCAATTCAGCCAGGACAAAGTTATGTGTACAACTTCACAATCATAGGACAAAGAGGAACATTGTGGTATCATGCACATATTTCATGGCTTAGATCTACTCTTCATGGTCCTATTGTCATTCTTCCCAAAAAGCATGTGCCTTATCCATTCCCTCATCCTTTCAAACAAATCCCAATTGTATTAGGTAAATTAAGACCAATCAAAATATGTCACAAATTTTAATATTAACTTTACATGTACATTTTTCATTTGCTAAATTAGTATATTAACTTTGATAACATGGTTAGGGGAGTGGTGGAAAGCAGACACAGAAGCAGTTATAAATCAAGCAACACAAACAGGGTTAGCACCTAACACCTCAGATGCTCACACCATCAATGGCCTTCCAGGTCCTCTCCACAACTGTTCAGCTAAAGGTATGTAGTACCAACAAATTAGATTAAAAATGTGTCCTATCGGTCTTTAACACTGACACGACACCAATACATGTGATTACATTCAATTATTTCGTTTTGTCAAACTAATTTTGGTGTTGATGTGTCAGTGTTGTGTCTGGTGTTCATATCTATGTCAGTGTTGACATTCGAAAGAAAAGCACAAACATAGTCCATTCGAAACCATATTAGTGATTATTTTCATTCAATCAAGTTGTTAAAATTTTCCATTTGTGCAGATACCTTTAAGCTCAAGGTTCTGCCAGGGAAAACATATCTACTAAGAATAATCAATGCTGCACTCAATGATGAGATGTTCTTTAGCATTGCTAATCACACCCTCCTTGTTGTTGATGCTGATGCTGTTTATGTAAAGCCCTTTAGAACCAACATTGTACTTATCACACCAGGCCAAACCACCAATGTCCTTCTCAAAACCAAATCCAAAACACCAAATGCCAAATTTGTCATAGCTTCAAGACCTTATGCTACAGGTCCTGCATCTTTTGACAACACTACAGCAATTGGTTTCTTGGAATACAAGAAACATTCACTTTCAAACACTAGGTCAAAAAACAAAACTGTTAAACTTTTTAGACCAACACTTCCTAAATTCAATGACACTATCTTTGCAATGAACTTCAACACGAAACTTCGTAGCTTGAACAGCAAGAAATTCCCAGCAAAAGTTCCAAAAACCGTCGACAAGCACTTTTTCTTCACAGTTGGTTTAGGTATTAGTCAATGTTCAAAAAACCAAGCATGTCAAGGACCTAATAACACAAGAGTAGCAGCAGCTATTAACAATGTTTCATTTGTGATGCCAAACACTGCTTTACTTCAAGCTCATTTCTTCAACAAATCAAAAGGAGTTTTCACAACCGATTTTCCTTCTAATCCACCTGTTAAATTCAACTACACTGGAACACCACCAAAGAACCTCATGGTAAAGAGTGGAACTAAGGTTGCAGTTTTGCCATACAATACCAAAGTGGAGTTGGTGTTGCAGGATACAAGTATTCTTGGTGCTGAGAGTCATCCATTGCATCTTCATGGTTTTAACTTCTTCATTGTTGGTCAAGGAAATGGAAACTTTGACCCTAGAAAGGATCCTTCTAAGTTCAATTTGGTTGATCCTGTTGAAAGGAACACTGCTGGTGTTCCATCTGGTGGATGGCTTGCCTTGAGATTCCTTGCAGATAATCCAGGTGGGCAACATTTTAAATACTAAATTCCATTATTTTAATCAATAAATATGTTTGACGTAATATTATATTATTATTTTTTGTTCTTAACCGTCCGGCCCAGAGGACAAGGAGCCAGGTAATCCGTAGATAAGTAAAGTCTGGTTAAAAATTGTTTCATTCAGGGATTGAACTTAGTTCTCCTAATTCATTAATAATGTCCAACTTTTTGGTTACATCATATTGATCTAATACACTAATTAAGAGTTAACAAATAAAAACTTACATAATTTGGATTTTGGATATGATTTAGTGTTAATGTTTGTGAAATTAATGTTATGTTGATGATATATCATGAGCAGGTGTTTGGTTCATGCATTGCCATCTTGAAGTGCACACAAGTTGGGGATTGAAAATGGCATGGATTGTCCAGGATGGAAAACGGCGCAATCAGAAGCTGCCACCTCCACCTTCTGATCTTCCCAAATGTTGA
Protein sequence

>MS.gene96844.t1

MDFAYIKMSSFMRAMLIVLCALWILPELAHARHVRTTSHAKHVTTTRHYKFNIKLQNVTRLCQTKSIVTVNGQFPGPRIIAREGDRVIVKVVNHVQYNVSLHWHGIRQVRSAWADGPAYITQCPIQPGQSYVYNFTIIGQRGTLWYHAHISWLRSTLHGPIVILPKKHVPYPFPHPFKQIPIVLGEWWKADTEAVINQATQTGLAPNTSDAHTINGLPGPLHNCSAKDTFKLKVLPGKTYLLRIINAALNDEMFFSIANHTLLVVDADAVYVKPFRTNIVLITPGQTTNVLLKTKSKTPNAKFVIASRPYATGPASFDNTTAIGFLEYKKHSLSNTRSKNKTVKLFRPTLPKFNDTIFAMNFNTKLRSLNSKKFPAKVPKTVDKHFFFTVGLGISQCSKNQACQGPNNTRVAAAINNVSFVMPNTALLQAHFFNKSKGVFTTDFPSNPPVKFNYTGTPPKNLMVKSGTKVAVLPYNTKVELVLQDTSILGAESHPLHLHGFNFFIVGQGNGNFDPRKDPSKFNLVDPVERNTAGVPSGGWLALRFLADNPGVWFMHCHLEVHTSWGLKMAWIVQDGKRRNQKLPPPPSDLPKC