Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97305.t1 | XP_003621622.1 | 97.2 | 814 | 23 | 0 | 1 | 814 | 19 | 832 | 0.00E+00 | 1445.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97305.t1 | Q5W7F2 | 77.2 | 745 | 159 | 3 | 1 | 745 | 19 | 752 | 0.0e+00 | 1095.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97305.t1 | G7KSV6 | 97.2 | 814 | 23 | 0 | 1 | 814 | 19 | 832 | 0.0e+00 | 1445.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053144 | MS.gene97305 | 0.807729 | 4.38E-50 | -1.69E-46 |
MS.gene054584 | MS.gene97305 | 0.819228 | 1.30E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97305.t1 | MTR_7g020860 | 98.894 | 814 | 9 | 0 | 1 | 814 | 19 | 832 | 0.0 | 1685 |
MS.gene97305.t1 | MTR_7g020860 | 99.512 | 615 | 3 | 0 | 1 | 615 | 19 | 633 | 0.0 | 1274 |
MS.gene97305.t1 | MTR_8g100100 | 58.427 | 801 | 295 | 6 | 1 | 800 | 19 | 782 | 0.0 | 950 |
MS.gene97305.t1 | MTR_8g100100 | 57.993 | 807 | 295 | 7 | 1 | 800 | 19 | 788 | 0.0 | 943 |
MS.gene97305.t1 | MTR_3g098680 | 57.791 | 815 | 298 | 9 | 1 | 807 | 19 | 795 | 0.0 | 907 |
MS.gene97305.t1 | MTR_4g074170 | 47.073 | 803 | 359 | 11 | 1 | 800 | 21 | 760 | 0.0 | 713 |
MS.gene97305.t1 | MTR_2g080950 | 40.559 | 143 | 54 | 3 | 482 | 624 | 14 | 125 | 8.06e-25 | 109 |
MS.gene97305.t1 | MTR_8g464390 | 41.958 | 143 | 52 | 3 | 482 | 624 | 14 | 125 | 8.94e-25 | 108 |
MS.gene97305.t1 | MTR_6g080710 | 39.568 | 139 | 53 | 3 | 482 | 619 | 14 | 122 | 1.68e-22 | 98.6 |
MS.gene97305.t1 | MTR_8g038400 | 34.857 | 175 | 84 | 4 | 495 | 668 | 28 | 173 | 9.40e-22 | 98.6 |
MS.gene97305.t1 | MTR_8g088320 | 41.860 | 129 | 50 | 5 | 496 | 623 | 21 | 125 | 8.45e-20 | 91.7 |
MS.gene97305.t1 | MTR_2g030230 | 39.535 | 129 | 53 | 4 | 496 | 623 | 30 | 134 | 5.22e-19 | 89.7 |
MS.gene97305.t1 | MTR_3g017500 | 38.686 | 137 | 59 | 3 | 487 | 622 | 24 | 136 | 1.56e-18 | 89.0 |
MS.gene97305.t1 | MTR_3g017500 | 38.686 | 137 | 59 | 3 | 487 | 622 | 54 | 166 | 2.09e-18 | 89.0 |
MS.gene97305.t1 | MTR_8g067080 | 49.254 | 67 | 32 | 1 | 496 | 562 | 22 | 86 | 4.60e-14 | 75.5 |
MS.gene97305.t1 | MTR_8g471110 | 49.254 | 67 | 32 | 1 | 496 | 562 | 22 | 86 | 4.60e-14 | 75.5 |
MS.gene97305.t1 | MTR_8g067080 | 49.254 | 67 | 32 | 1 | 496 | 562 | 22 | 86 | 4.76e-14 | 75.5 |
MS.gene97305.t1 | MTR_8g067090 | 43.836 | 73 | 39 | 1 | 496 | 568 | 22 | 92 | 1.95e-13 | 73.6 |
MS.gene97305.t1 | MTR_8g471120 | 43.836 | 73 | 39 | 1 | 496 | 568 | 22 | 92 | 1.95e-13 | 73.6 |
MS.gene97305.t1 | MTR_1g069000 | 45.333 | 75 | 39 | 1 | 490 | 564 | 10 | 82 | 2.13e-13 | 73.9 |
MS.gene97305.t1 | MTR_8g464390 | 40.952 | 105 | 31 | 3 | 520 | 624 | 1 | 74 | 6.14e-13 | 72.0 |
MS.gene97305.t1 | MTR_2g080950 | 39.048 | 105 | 33 | 3 | 520 | 624 | 1 | 74 | 8.37e-13 | 71.6 |
MS.gene97305.t1 | MTR_7g099830 | 47.826 | 69 | 34 | 1 | 496 | 564 | 16 | 82 | 2.11e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97305.t1 | AT5G13300 | 76.904 | 814 | 177 | 3 | 1 | 814 | 19 | 821 | 0.0 | 1248 |
MS.gene97305.t1 | AT5G61980 | 66.056 | 819 | 260 | 9 | 1 | 812 | 19 | 826 | 0.0 | 1056 |
MS.gene97305.t1 | AT1G10870 | 44.569 | 801 | 389 | 15 | 1 | 800 | 20 | 766 | 0.0 | 652 |
MS.gene97305.t1 | AT1G10870 | 44.694 | 801 | 383 | 16 | 1 | 800 | 20 | 761 | 0.0 | 650 |
MS.gene97305.t1 | AT1G60860 | 43.866 | 807 | 382 | 14 | 1 | 800 | 20 | 762 | 0.0 | 644 |
MS.gene97305.t1 | AT1G60860 | 42.657 | 715 | 339 | 14 | 93 | 800 | 1 | 651 | 0.0 | 538 |
MS.gene97305.t1 | AT1G60860 | 41.294 | 649 | 318 | 13 | 155 | 800 | 3 | 591 | 1.36e-153 | 462 |
MS.gene97305.t1 | AT5G54310 | 42.636 | 129 | 43 | 3 | 496 | 624 | 28 | 125 | 2.74e-24 | 107 |
MS.gene97305.t1 | AT3G17660 | 34.731 | 167 | 72 | 4 | 470 | 636 | 7 | 136 | 2.45e-22 | 95.5 |
MS.gene97305.t1 | AT3G17660 | 36.170 | 141 | 59 | 2 | 482 | 622 | 14 | 123 | 6.85e-22 | 95.9 |
MS.gene97305.t1 | AT3G17660 | 35.294 | 153 | 63 | 3 | 470 | 622 | 7 | 123 | 1.73e-21 | 95.1 |
MS.gene97305.t1 | AT4G21160 | 42.636 | 129 | 49 | 5 | 496 | 623 | 27 | 131 | 1.01e-20 | 94.7 |
MS.gene97305.t1 | AT4G21160 | 42.636 | 129 | 49 | 5 | 496 | 623 | 27 | 131 | 1.01e-20 | 94.7 |
MS.gene97305.t1 | AT4G21160 | 42.636 | 129 | 49 | 5 | 496 | 623 | 27 | 131 | 1.01e-20 | 94.7 |
MS.gene97305.t1 | AT4G21160 | 42.636 | 129 | 49 | 5 | 496 | 623 | 27 | 131 | 1.01e-20 | 94.7 |
MS.gene97305.t1 | AT3G07940 | 40.940 | 149 | 59 | 7 | 483 | 627 | 43 | 166 | 3.96e-19 | 88.6 |
MS.gene97305.t1 | AT3G07940 | 40.940 | 149 | 59 | 7 | 483 | 627 | 43 | 166 | 2.60e-18 | 88.6 |
MS.gene97305.t1 | AT4G05330 | 39.535 | 129 | 53 | 4 | 496 | 623 | 27 | 131 | 3.01e-18 | 87.4 |
MS.gene97305.t1 | AT4G05330 | 39.535 | 129 | 53 | 4 | 496 | 623 | 27 | 131 | 3.01e-18 | 87.4 |
MS.gene97305.t1 | AT3G17660 | 30.719 | 153 | 60 | 3 | 470 | 622 | 7 | 113 | 1.56e-14 | 74.3 |
MS.gene97305.t1 | AT4G17890 | 45.205 | 73 | 38 | 1 | 496 | 568 | 25 | 95 | 2.43e-13 | 73.2 |
MS.gene97305.t1 | AT4G17890 | 45.205 | 73 | 38 | 1 | 496 | 568 | 25 | 95 | 2.70e-13 | 73.2 |
MS.gene97305.t1 | AT5G46750 | 45.205 | 73 | 38 | 1 | 496 | 568 | 22 | 92 | 5.04e-13 | 72.4 |
MS.gene97305.t1 | AT3G53710 | 48.438 | 64 | 31 | 1 | 496 | 559 | 16 | 77 | 8.78e-13 | 72.0 |
MS.gene97305.t1 | AT3G53710 | 48.438 | 64 | 31 | 1 | 496 | 559 | 16 | 77 | 8.78e-13 | 72.0 |
MS.gene97305.t1 | AT3G53710 | 48.438 | 64 | 31 | 1 | 496 | 559 | 16 | 77 | 8.78e-13 | 72.0 |
MS.gene97305.t1 | AT2G35210 | 39.796 | 98 | 51 | 2 | 471 | 568 | 3 | 92 | 1.22e-12 | 70.9 |
MS.gene97305.t1 | AT2G35210 | 48.611 | 72 | 31 | 1 | 471 | 542 | 3 | 68 | 1.64e-12 | 70.5 |
MS.gene97305.t1 | AT2G37550 | 48.438 | 64 | 31 | 1 | 496 | 559 | 16 | 77 | 2.65e-12 | 70.5 |
MS.gene97305.t1 | AT2G37550 | 48.438 | 64 | 31 | 1 | 496 | 559 | 16 | 77 | 2.65e-12 | 70.5 |
MS.gene97305.t1 | AT5G66055 | 47.297 | 74 | 39 | 0 | 721 | 794 | 325 | 398 | 8.38e-12 | 68.6 |
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGCTGCTGGTTCAAATTTC+TGG | 0.132441 | 7.3:-78699269 | None:intergenic |
TTCTAATTGCTCTATGAATT+TGG | 0.168012 | 7.3:+78701133 | MS.gene97305:CDS |
GCAATCAAGAAGTGCCTTTC+AGG | 0.187884 | 7.3:+78700186 | MS.gene97305:CDS |
TATACGAAAGTTACCCTTTC+AGG | 0.190867 | 7.3:-78699040 | None:intergenic |
AATGCGTTCCCTGCCAAATT+AGG | 0.193423 | 7.3:-78701101 | None:intergenic |
TCTTAATGCTATAGTGAATT+TGG | 0.197605 | 7.3:-78695103 | None:intergenic |
GAGAGCTGCTTGCTCATAAT+TGG | 0.206301 | 7.3:-78698117 | None:intergenic |
CAATGATCACGGCCCTAATT+TGG | 0.249954 | 7.3:+78701088 | MS.gene97305:CDS |
AATAGTTCGGAGCTTGGTTC+TGG | 0.296829 | 7.3:+78698666 | MS.gene97305:CDS |
ATTAACAATGTAGCGGTATA+CGG | 0.302643 | 7.3:-78700976 | None:intergenic |
TACAAAAGCCTACCTCTTCT+AGG | 0.303309 | 7.3:-78697508 | None:intergenic |
GATTCTGCAGCAAGCTCAAT+AGG | 0.316009 | 7.3:-78701897 | None:intergenic |
CAGGTTGATCTTGTCCCTAC+AGG | 0.324179 | 7.3:+78700205 | MS.gene97305:CDS |
CTACACTGATGGGGTCATTA+TGG | 0.324472 | 7.3:-78694688 | None:intergenic |
GACCCCATCAGTGTAGCTTT+TGG | 0.325584 | 7.3:+78694695 | MS.gene97305:CDS |
ATAGTGAATTTGGTCATAAC+AGG | 0.328216 | 7.3:-78695093 | None:intergenic |
AGTGATGCCCAATCTGGTTC+AGG | 0.336427 | 7.3:-78699370 | None:intergenic |
ATAACTTTATTTCAGTCTCT+TGG | 0.340949 | 7.3:+78700127 | MS.gene97305:CDS |
AACAAAGAACTACACTTTGC+AGG | 0.344247 | 7.3:+78698845 | MS.gene97305:CDS |
TAATATTTGCGCCATATTGC+AGG | 0.345337 | 7.3:-78701253 | None:intergenic |
ACTATAGCATTAAGAGAAAT+CGG | 0.349793 | 7.3:+78695111 | MS.gene97305:CDS |
CTCTCTTACATTGGACGTTA+AGG | 0.354608 | 7.3:+78700087 | MS.gene97305:CDS |
GCAAGTGCCCTAGAAACTTT+TGG | 0.355212 | 7.3:+78694659 | MS.gene97305:CDS |
CCACTTCCCATTGGACTTGC+CGG | 0.360900 | 7.3:-78699130 | None:intergenic |
TGAGCAAACTCGATTTAATC+TGG | 0.361409 | 7.3:+78697629 | MS.gene97305:CDS |
ATACGTTTGCCAACTCTGTC+TGG | 0.361533 | 7.3:+78700152 | MS.gene97305:CDS |
TCTTAGTAGCACAACAGATC+TGG | 0.365114 | 7.3:+78700925 | MS.gene97305:CDS |
TGGGCTTCTAATGGTTCTAA+TGG | 0.365499 | 7.3:+78698188 | MS.gene97305:CDS |
GCTCCATCAAATGATTCTAA+TGG | 0.369320 | 7.3:+78701945 | MS.gene97305:CDS |
GCAAATCAATATTGACAAAC+TGG | 0.370026 | 7.3:-78695845 | None:intergenic |
CATCCATTAGAATCATTTGA+TGG | 0.371256 | 7.3:-78701948 | None:intergenic |
ATGCGTTCCCTGCCAAATTA+GGG | 0.379799 | 7.3:-78701100 | None:intergenic |
TTGCAAGATTGCTACTTTCA+AGG | 0.380878 | 7.3:+78701339 | MS.gene97305:CDS |
GAAAACTGTTTGTGGCTTAT+CGG | 0.383032 | 7.3:-78700340 | None:intergenic |
ACTCTTCGCAACACATCAAT+TGG | 0.383417 | 7.3:-78699313 | None:intergenic |
GGCTCTAGCAGTCAACATTC+TGG | 0.387411 | 7.3:+78698636 | MS.gene97305:CDS |
GATGTGTTGCGAAGAGTTAT+TGG | 0.395797 | 7.3:+78699319 | MS.gene97305:CDS |
GTGGAGCTCCTCCTGCAATA+TGG | 0.396075 | 7.3:+78701242 | MS.gene97305:CDS |
CTTGTTTGCATTGAATGTTC+CGG | 0.396172 | 7.3:+78699406 | MS.gene97305:CDS |
GGTTCTAATGGATCTCCTAA+TGG | 0.402471 | 7.3:+78698200 | MS.gene97305:CDS |
AGATTTAGTGATGCCCAATC+TGG | 0.407169 | 7.3:-78699376 | None:intergenic |
TAACTTTATTTCAGTCTCTT+GGG | 0.409140 | 7.3:+78700128 | MS.gene97305:CDS |
CCAAGCGGTCGTCAAACTTA+AGG | 0.409727 | 7.3:+78698424 | MS.gene97305:CDS |
AGTAATGCTATTACAAGAAC+AGG | 0.412893 | 7.3:+78701061 | MS.gene97305:CDS |
AGAATCATATTGACCAGGTT+TGG | 0.417148 | 7.3:-78700367 | None:intergenic |
ATTCTGCAGCAAGCTCAATA+GGG | 0.419208 | 7.3:-78701896 | None:intergenic |
CAAGCGGTCGTCAAACTTAA+GGG | 0.420636 | 7.3:+78698425 | MS.gene97305:CDS |
ATGGTTTGCTGCATTGTTTA+CGG | 0.421371 | 7.3:-78698503 | None:intergenic |
ATACCGCTACATTGTTAATT+CGG | 0.421557 | 7.3:+78700980 | MS.gene97305:CDS |
TTCTTGTAATAGCATTACTT+TGG | 0.424670 | 7.3:-78701057 | None:intergenic |
ATGCTGACCAATCAGATTTG+AGG | 0.438644 | 7.3:+78698799 | MS.gene97305:CDS |
ATGTGTTGCGAAGAGTTATT+GGG | 0.448370 | 7.3:+78699320 | MS.gene97305:CDS |
CTTTGATTGTTGATGTAAGC+AGG | 0.452904 | 7.3:-78698773 | None:intergenic |
CCATTTCTATCAGTTGTTGC+CGG | 0.453353 | 7.3:+78699111 | MS.gene97305:intron |
GTATGAACTATTACATCAAA+TGG | 0.454227 | 7.3:+78697911 | MS.gene97305:CDS |
GTGGGGCCCCTGAACCAGAT+TGG | 0.454280 | 7.3:+78699362 | MS.gene97305:CDS |
TGCAAAGTGTAGTTCTTTGT+TGG | 0.456177 | 7.3:-78698843 | None:intergenic |
GTAGGTTCGCTCTCTTACAT+TGG | 0.459438 | 7.3:+78700078 | MS.gene97305:intron |
TGGGGCCCCTGAACCAGATT+GGG | 0.460177 | 7.3:+78699363 | MS.gene97305:CDS |
GTGATGCCCAATCTGGTTCA+GGG | 0.462999 | 7.3:-78699369 | None:intergenic |
ACATCTTCGTTACTTCAAAC+AGG | 0.464760 | 7.3:+78697810 | MS.gene97305:CDS |
TGTAAAAGAATACCTTTGCC+TGG | 0.465933 | 7.3:-78700413 | None:intergenic |
TTACTTTCCAGGGAAGGACT+TGG | 0.469478 | 7.3:+78694608 | MS.gene97305:intron |
GCTTGTATACCATCTCCATT+AGG | 0.473433 | 7.3:-78698215 | None:intergenic |
CAATGGGAAGTGGTCATCTC+AGG | 0.473521 | 7.3:+78699140 | MS.gene97305:CDS |
GAAAGTAGGTGGGCTTCTAA+TGG | 0.481638 | 7.3:+78698179 | MS.gene97305:CDS |
GATCACGGCCCTAATTTGGC+AGG | 0.483100 | 7.3:+78701092 | MS.gene97305:CDS |
AGTCGGTACTGATTGTCCTT+CGG | 0.484971 | 7.3:-78700903 | None:intergenic |
CAGAGGAATAGTTCGGAGCT+TGG | 0.490071 | 7.3:+78698660 | MS.gene97305:CDS |
GATTGGGCATCACTAAATCT+TGG | 0.493255 | 7.3:+78699379 | MS.gene97305:CDS |
CCTTAAGTTTGACGACCGCT+TGG | 0.494780 | 7.3:-78698424 | None:intergenic |
TGGCAGGGAACGCATTGGAC+TGG | 0.495152 | 7.3:+78701108 | MS.gene97305:CDS |
GTTCTGGACTTCTTAGTCGA+TGG | 0.495196 | 7.3:+78698682 | MS.gene97305:CDS |
ACTTCTCTCTCTCAAAGATT+CGG | 0.496519 | 7.3:-78693727 | None:intergenic |
AAGTTTCTTTCACTGAGAAA+AGG | 0.500366 | 7.3:+78697461 | MS.gene97305:CDS |
AGCAAAACCTCAAATCTGAT+TGG | 0.500595 | 7.3:-78698806 | None:intergenic |
CCTCCAAAAGCTACACTGAT+GGG | 0.501052 | 7.3:-78694698 | None:intergenic |
GTAATAGCATTACTTTGGCA+AGG | 0.507209 | 7.3:-78701052 | None:intergenic |
CTTCGAGATTGACCATTGGC+TGG | 0.508589 | 7.3:-78701172 | None:intergenic |
CGATCCTCGAGCTGTGGATG+AGG | 0.509373 | 7.3:+78701863 | MS.gene97305:CDS |
GTTGTTGCCGGCAAGTCCAA+TGG | 0.509510 | 7.3:+78699123 | MS.gene97305:intron |
AATTTCTGGACGTACGCTCC+AGG | 0.514396 | 7.3:-78699255 | None:intergenic |
ATGATAAATGTGCTGATTGT+GGG | 0.515223 | 7.3:+78699344 | MS.gene97305:CDS |
CTTAGTAGCACAACAGATCT+GGG | 0.517392 | 7.3:+78700926 | MS.gene97305:CDS |
GGACTTGGAGAGGCATATGA+TGG | 0.521668 | 7.3:+78694623 | MS.gene97305:CDS |
GAGCTCTCAGATTCCTGAAA+GGG | 0.521977 | 7.3:+78699027 | MS.gene97305:CDS |
CAAGGAAGTCCTTCGATCAC+AGG | 0.522285 | 7.3:+78695140 | MS.gene97305:CDS |
TAGAATCATTTGATGGAGCA+TGG | 0.523841 | 7.3:-78701941 | None:intergenic |
GTGCGCTGGACCAAATGGAT+TGG | 0.524874 | 7.3:+78698969 | MS.gene97305:CDS |
AGAGAGTGCGCTGGACCAAA+TGG | 0.525588 | 7.3:+78698964 | MS.gene97305:CDS |
TTCTGGTCAGAGGAATAGTT+CGG | 0.526551 | 7.3:+78698653 | MS.gene97305:CDS |
CCTCGAGCTGTGGATGAGGA+TGG | 0.527146 | 7.3:+78701867 | MS.gene97305:CDS |
TTCAAAAGAACTACTCTCAC+TGG | 0.527595 | 7.3:-78699167 | None:intergenic |
TGGGGATTATTTACCCTGTA+GGG | 0.530167 | 7.3:-78700219 | None:intergenic |
AATTGCTCTATGAATTTGGT+GGG | 0.530259 | 7.3:+78701137 | MS.gene97305:CDS |
CTGAGATGACCACTTCCCAT+TGG | 0.531493 | 7.3:-78699139 | None:intergenic |
TTGAGAATACAACGATGTAA+AGG | 0.532368 | 7.3:-78701302 | None:intergenic |
GTGGGGATTATTTACCCTGT+AGG | 0.542017 | 7.3:-78700220 | None:intergenic |
ATGCTCAGCAATCAAGAGAA+AGG | 0.542125 | 7.3:+78698093 | MS.gene97305:CDS |
AATTTGGTGGGTACTAAAGA+AGG | 0.543440 | 7.3:+78701149 | MS.gene97305:CDS |
TTGTTGCCGGCAAGTCCAAT+GGG | 0.543876 | 7.3:+78699124 | MS.gene97305:CDS |
TAATAGCATTACTTTGGCAA+GGG | 0.544635 | 7.3:-78701051 | None:intergenic |
TACGTTTGCCAACTCTGTCT+GGG | 0.545380 | 7.3:+78700153 | MS.gene97305:CDS |
TAATTTGGCAGGGAACGCAT+TGG | 0.547365 | 7.3:+78701103 | MS.gene97305:CDS |
ATATGATTCTCTAGCAGTGA+AGG | 0.549569 | 7.3:+78700380 | MS.gene97305:CDS |
GGGAGGCGATCCTCGAGCTG+TGG | 0.550478 | 7.3:+78701857 | MS.gene97305:CDS |
TAATTGCTCTATGAATTTGG+TGG | 0.550506 | 7.3:+78701136 | MS.gene97305:CDS |
TCCGGTGTTCATCGAAACCT+TGG | 0.552972 | 7.3:+78699424 | MS.gene97305:CDS |
ACCTCCAAAAGCTACACTGA+TGG | 0.553050 | 7.3:-78694699 | None:intergenic |
TTACATCGTTGTATTCTCAA+AGG | 0.553175 | 7.3:+78701305 | MS.gene97305:CDS |
CTTATGTGAACTTCTACCAA+TGG | 0.555656 | 7.3:-78698237 | None:intergenic |
TACATTGGACGTTAAGGTGT+GGG | 0.556800 | 7.3:+78700093 | MS.gene97305:CDS |
TGAAATAAAGTTATCACAGA+AGG | 0.557098 | 7.3:-78700118 | None:intergenic |
ACAAAAGCCTACCTCTTCTA+GGG | 0.557197 | 7.3:-78697507 | None:intergenic |
AATGATAAATGTGCTGATTG+TGG | 0.559781 | 7.3:+78699343 | MS.gene97305:CDS |
AAGAGAAATCGGGACATACA+AGG | 0.560937 | 7.3:+78695122 | MS.gene97305:CDS |
TATTGATTTGCAAGAAGTCA+AGG | 0.561136 | 7.3:+78695857 | MS.gene97305:CDS |
CTATAGCATTAAGAGAAATC+GGG | 0.563886 | 7.3:+78695112 | MS.gene97305:CDS |
AATGGATCTCCTAATGGAGA+TGG | 0.565937 | 7.3:+78698206 | MS.gene97305:CDS |
GCAGAATGCTGCCAAGGGAA+AGG | 0.568293 | 7.3:+78698277 | MS.gene97305:CDS |
AATGCACCTGGTCATAGATA+AGG | 0.569583 | 7.3:-78697085 | None:intergenic |
GGAGATGGTATACAAGCCAT+TGG | 0.574707 | 7.3:+78698221 | MS.gene97305:CDS |
AGTGCAGGCAGAGAGTGCGC+TGG | 0.574995 | 7.3:+78698955 | MS.gene97305:intron |
CCGGCAAGTCCAATGGGAAG+TGG | 0.575473 | 7.3:+78699130 | MS.gene97305:CDS |
AGGTTGATCTTGTCCCTACA+GGG | 0.575707 | 7.3:+78700206 | MS.gene97305:CDS |
GTAACGAAGATGTGCATCCA+TGG | 0.575869 | 7.3:-78697800 | None:intergenic |
TTGGTGATGAAAACTGTTTG+TGG | 0.577029 | 7.3:-78700348 | None:intergenic |
CCTTGGTGTGCACATATCAA+AGG | 0.577329 | 7.3:+78699441 | MS.gene97305:CDS |
CAGCCAATGGTCAATCTCGA+AGG | 0.577409 | 7.3:+78701173 | MS.gene97305:CDS |
AGTAATGCAGAATGCTGCCA+AGG | 0.579392 | 7.3:+78698271 | MS.gene97305:CDS |
GCTTGTGAAACTGCAGACAT+TGG | 0.580822 | 7.3:+78701215 | MS.gene97305:CDS |
CACCCTTCGAGATTGACCAT+TGG | 0.583775 | 7.3:-78701176 | None:intergenic |
GGAAGCAGTCAGTGGGACCA+TGG | 0.589203 | 7.3:+78697783 | MS.gene97305:CDS |
ATTAATGCAACTGATTTGAG+AGG | 0.591119 | 7.3:+78701272 | MS.gene97305:CDS |
AGCCAGCCTTATCTATGACC+AGG | 0.594107 | 7.3:+78697079 | MS.gene97305:CDS |
TTCTGCAGCAAGCTCAATAG+GGG | 0.596919 | 7.3:-78701895 | None:intergenic |
AGATTGATCGAGAAAGTAGG+TGG | 0.598984 | 7.3:+78698168 | MS.gene97305:CDS |
AGTGAAGGAAAAGTTCATCC+AGG | 0.603171 | 7.3:+78700395 | MS.gene97305:CDS |
AAGCGGTCGTCAAACTTAAG+GGG | 0.604023 | 7.3:+78698426 | MS.gene97305:CDS |
GGAAAAGTTCATCCAGGCAA+AGG | 0.607228 | 7.3:+78700401 | MS.gene97305:CDS |
TGATGCCCAATCTGGTTCAG+GGG | 0.609198 | 7.3:-78699368 | None:intergenic |
TGAGCTCTCAGATTCCTGAA+AGG | 0.609711 | 7.3:+78699026 | MS.gene97305:CDS |
CCATCCTCATCCACAGCTCG+AGG | 0.615689 | 7.3:-78701867 | None:intergenic |
CACCTGGTCATAGATAAGGC+TGG | 0.616998 | 7.3:-78697081 | None:intergenic |
GCTAGAGAATCATATTGACC+AGG | 0.617472 | 7.3:-78700372 | None:intergenic |
TGTAGCTACTGCCCTAGAAG+AGG | 0.617795 | 7.3:+78697496 | MS.gene97305:CDS |
AGCGGTCGTCAAACTTAAGG+GGG | 0.621606 | 7.3:+78698427 | MS.gene97305:CDS |
GCAGTCAACATTCTGGTCAG+AGG | 0.624182 | 7.3:+78698643 | MS.gene97305:CDS |
TACTAAAGAAGGCCAGCCAA+TGG | 0.624826 | 7.3:+78701160 | MS.gene97305:CDS |
AATGGAGCCGTACATTAACC+AGG | 0.628214 | 7.3:+78697929 | MS.gene97305:CDS |
GAACAGGCAAACAATGATCA+CGG | 0.629231 | 7.3:+78701077 | MS.gene97305:CDS |
TTCCAGGGAAGGACTTGGAG+AGG | 0.629726 | 7.3:+78694613 | MS.gene97305:intron |
TTACATTGGACGTTAAGGTG+TGG | 0.632129 | 7.3:+78700092 | MS.gene97305:CDS |
GTTCACAGTGTGATGAGCAA+CGG | 0.632589 | 7.3:-78698751 | None:intergenic |
AACTGCAGACATTGGAATGG+TGG | 0.635357 | 7.3:+78701223 | MS.gene97305:CDS |
TATTTGCGCCATATTGCAGG+AGG | 0.636613 | 7.3:-78701250 | None:intergenic |
AAGTTCCTCCCAGACAGAGT+TGG | 0.637874 | 7.3:-78700161 | None:intergenic |
ATCACGGCCCTAATTTGGCA+GGG | 0.637982 | 7.3:+78701093 | MS.gene97305:CDS |
AGCCAATGGTCAATCTCGAA+GGG | 0.638718 | 7.3:+78701174 | MS.gene97305:CDS |
TCTGTTGTGCTACTAAGAGT+CGG | 0.644075 | 7.3:-78700920 | None:intergenic |
CTCCAAAAGCTACACTGATG+GGG | 0.644943 | 7.3:-78694697 | None:intergenic |
AATAGTTTACCTGTGATCGA+AGG | 0.645214 | 7.3:-78695149 | None:intergenic |
TGATAAATGTGCTGATTGTG+GGG | 0.646145 | 7.3:+78699345 | MS.gene97305:CDS |
ACCAAGGTTTCGATGAACAC+CGG | 0.647700 | 7.3:-78699425 | None:intergenic |
GTAATGCAGAATGCTGCCAA+GGG | 0.652738 | 7.3:+78698272 | MS.gene97305:CDS |
GACAGATTGATCGAGAAAGT+AGG | 0.661266 | 7.3:+78698165 | MS.gene97305:CDS |
TGAAACTGCAGACATTGGAA+TGG | 0.673767 | 7.3:+78701220 | MS.gene97305:CDS |
CATCCGAATTAACAATGTAG+CGG | 0.674705 | 7.3:-78700983 | None:intergenic |
CCTTTGATATGTGCACACCA+AGG | 0.680873 | 7.3:-78699441 | None:intergenic |
AGGGACAAGATCAACCTGAA+AGG | 0.685935 | 7.3:-78700200 | None:intergenic |
AATCTGAGAGCTCAGCAATG+AGG | 0.686046 | 7.3:-78699017 | None:intergenic |
TCTTTGTTGGTGAAATGATG+CGG | 0.687553 | 7.3:-78698830 | None:intergenic |
TAGGTTCAGACTATTCGACA+AGG | 0.690633 | 7.3:+78698393 | MS.gene97305:intron |
GATTGATCGAGAAAGTAGGT+GGG | 0.696174 | 7.3:+78698169 | MS.gene97305:CDS |
TAGTGAATTTGGTCATAACA+GGG | 0.703666 | 7.3:-78695092 | None:intergenic |
GTTTGCCAACTCTGTCTGGG+AGG | 0.706516 | 7.3:+78700156 | MS.gene97305:CDS |
GACAAGGTTATCTCTCCAAG+CGG | 0.715090 | 7.3:+78698409 | MS.gene97305:CDS |
GCGGTCGTCAAACTTAAGGG+GGG | 0.722278 | 7.3:+78698428 | MS.gene97305:CDS |
TACTTTCTTCAACAGCACAG+TGG | 0.722434 | 7.3:-78699204 | None:intergenic |
AGTAGCACAACAGATCTGGG+AGG | 0.753828 | 7.3:+78700929 | MS.gene97305:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 78693714 | 78701971 | 78693714 | ID=MS.gene97305 |
chr7.3 | mRNA | 78693714 | 78701971 | 78693714 | ID=MS.gene97305.t1;Parent=MS.gene97305 |
chr7.3 | exon | 78693714 | 78693781 | 78693714 | ID=MS.gene97305.t1.exon1;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78693714 | 78693781 | 78693714 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78694619 | 78694719 | 78694619 | ID=MS.gene97305.t1.exon2;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78694619 | 78694719 | 78694619 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78695091 | 78695161 | 78695091 | ID=MS.gene97305.t1.exon3;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78695091 | 78695161 | 78695091 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78695816 | 78695878 | 78695816 | ID=MS.gene97305.t1.exon4;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78695816 | 78695878 | 78695816 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78697056 | 78697100 | 78697056 | ID=MS.gene97305.t1.exon5;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78697056 | 78697100 | 78697056 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78697452 | 78697517 | 78697452 | ID=MS.gene97305.t1.exon6;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78697452 | 78697517 | 78697452 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78697603 | 78697650 | 78697603 | ID=MS.gene97305.t1.exon7;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78697603 | 78697650 | 78697603 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78697736 | 78697831 | 78697736 | ID=MS.gene97305.t1.exon8;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78697736 | 78697831 | 78697736 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78697909 | 78697950 | 78697909 | ID=MS.gene97305.t1.exon9;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78697909 | 78697950 | 78697909 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78698083 | 78698298 | 78698083 | ID=MS.gene97305.t1.exon10;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78698083 | 78698298 | 78698083 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78698396 | 78698527 | 78698396 | ID=MS.gene97305.t1.exon11;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78698396 | 78698527 | 78698396 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78698636 | 78698866 | 78698636 | ID=MS.gene97305.t1.exon12;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78698636 | 78698866 | 78698636 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78698962 | 78699048 | 78698962 | ID=MS.gene97305.t1.exon13;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78698962 | 78699048 | 78698962 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78699124 | 78699462 | 78699124 | ID=MS.gene97305.t1.exon14;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78699124 | 78699462 | 78699124 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78700082 | 78700227 | 78700082 | ID=MS.gene97305.t1.exon15;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78700082 | 78700227 | 78700082 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78700329 | 78700422 | 78700329 | ID=MS.gene97305.t1.exon16;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78700329 | 78700422 | 78700329 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78700876 | 78701360 | 78700876 | ID=MS.gene97305.t1.exon17;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78700876 | 78701360 | 78700876 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
chr7.3 | exon | 78701857 | 78701971 | 78701857 | ID=MS.gene97305.t1.exon18;Parent=MS.gene97305.t1 |
chr7.3 | CDS | 78701857 | 78701971 | 78701857 | ID=cds.MS.gene97305.t1;Parent=MS.gene97305.t1 |
Gene Sequence |
Protein sequence |