Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97387.t1 | AES68818.1 | 80.5 | 410 | 48 | 4 | 1 | 408 | 1 | 380 | 5.60E-171 | 610.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97387.t1 | Q9S7T8 | 49.0 | 398 | 188 | 6 | 14 | 406 | 3 | 390 | 2.9e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97387.t1 | G7IVY4 | 80.5 | 410 | 48 | 4 | 1 | 408 | 1 | 380 | 4.0e-171 | 610.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97387 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene97387 | PPI |
| MS.gene031697 | MS.gene97387 | PPI |
| MS.gene97387 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene97387 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97387.t1 | MTR_3g015620 | 82.195 | 410 | 41 | 4 | 1 | 408 | 1 | 380 | 0.0 | 625 |
| MS.gene97387.t1 | MTR_3g018740 | 66.332 | 398 | 111 | 7 | 16 | 406 | 5 | 386 | 4.52e-179 | 504 |
| MS.gene97387.t1 | MTR_3g101010 | 68.020 | 394 | 112 | 6 | 16 | 406 | 5 | 387 | 3.01e-175 | 494 |
| MS.gene97387.t1 | MTR_8g461160 | 65.672 | 402 | 112 | 8 | 16 | 406 | 6 | 392 | 3.07e-170 | 482 |
| MS.gene97387.t1 | MTR_8g027395 | 62.255 | 408 | 132 | 8 | 7 | 407 | 4 | 396 | 7.52e-169 | 478 |
| MS.gene97387.t1 | MTR_3g101180 | 62.716 | 405 | 127 | 9 | 16 | 407 | 6 | 399 | 3.34e-163 | 464 |
| MS.gene97387.t1 | MTR_4g045707 | 62.437 | 394 | 132 | 6 | 16 | 406 | 6 | 386 | 9.61e-163 | 462 |
| MS.gene97387.t1 | MTR_3g101030 | 60.741 | 405 | 133 | 8 | 19 | 406 | 32 | 427 | 7.53e-161 | 459 |
| MS.gene97387.t1 | MTR_7g451890 | 58.824 | 408 | 147 | 8 | 10 | 406 | 3 | 400 | 5.05e-160 | 456 |
| MS.gene97387.t1 | MTR_7g047780 | 59.268 | 410 | 142 | 9 | 10 | 406 | 3 | 400 | 6.65e-158 | 451 |
| MS.gene97387.t1 | MTR_7g050750 | 58.621 | 406 | 144 | 8 | 11 | 406 | 3 | 394 | 1.51e-157 | 450 |
| MS.gene97387.t1 | MTR_3g048000 | 58.993 | 417 | 127 | 9 | 4 | 407 | 6 | 391 | 1.15e-156 | 447 |
| MS.gene97387.t1 | MTR_7g050810 | 57.656 | 418 | 149 | 9 | 1 | 406 | 1 | 402 | 3.01e-156 | 447 |
| MS.gene97387.t1 | MTR_3g101130 | 60.705 | 397 | 137 | 8 | 16 | 407 | 6 | 388 | 4.86e-156 | 446 |
| MS.gene97387.t1 | MTR_8g027420 | 60.759 | 395 | 126 | 8 | 16 | 407 | 6 | 374 | 3.83e-154 | 440 |
| MS.gene97387.t1 | MTR_2g046030 | 59.045 | 398 | 140 | 9 | 16 | 406 | 5 | 386 | 1.24e-153 | 439 |
| MS.gene97387.t1 | MTR_2g045980 | 59.548 | 398 | 138 | 9 | 16 | 406 | 5 | 386 | 1.81e-152 | 436 |
| MS.gene97387.t1 | MTR_4g088525 | 61.273 | 377 | 124 | 7 | 35 | 406 | 8 | 367 | 2.26e-152 | 436 |
| MS.gene97387.t1 | MTR_4g088535 | 59.494 | 395 | 126 | 9 | 16 | 407 | 7 | 370 | 5.82e-146 | 420 |
| MS.gene97387.t1 | MTR_3g101050 | 60.302 | 398 | 115 | 10 | 19 | 406 | 32 | 396 | 1.00e-142 | 412 |
| MS.gene97387.t1 | MTR_3g015760 | 78.788 | 264 | 49 | 3 | 145 | 408 | 25 | 281 | 2.24e-136 | 392 |
| MS.gene97387.t1 | MTR_3g102920 | 55.102 | 392 | 122 | 9 | 23 | 407 | 65 | 409 | 2.12e-127 | 374 |
| MS.gene97387.t1 | MTR_3g101190 | 54.933 | 375 | 88 | 9 | 38 | 407 | 13 | 311 | 9.11e-125 | 363 |
| MS.gene97387.t1 | MTR_3g101200 | 50.608 | 411 | 164 | 10 | 1 | 407 | 16 | 391 | 1.28e-115 | 343 |
| MS.gene97387.t1 | MTR_7g050830 | 53.433 | 335 | 120 | 5 | 1 | 316 | 1 | 318 | 1.56e-111 | 330 |
| MS.gene97387.t1 | MTR_3g100010 | 56.013 | 316 | 88 | 4 | 39 | 324 | 40 | 334 | 5.19e-109 | 324 |
| MS.gene97387.t1 | MTR_3g100995 | 61.240 | 258 | 90 | 4 | 150 | 406 | 14 | 262 | 4.59e-104 | 309 |
| MS.gene97387.t1 | MTR_3g018747 | 58.209 | 268 | 83 | 5 | 144 | 406 | 10 | 253 | 1.49e-95 | 286 |
| MS.gene97387.t1 | MTR_3g100520 | 57.205 | 229 | 72 | 6 | 184 | 407 | 1 | 208 | 3.04e-77 | 238 |
| MS.gene97387.t1 | MTR_3g114310 | 39.312 | 407 | 210 | 15 | 17 | 405 | 20 | 407 | 1.21e-74 | 239 |
| MS.gene97387.t1 | MTR_3g101110 | 55.556 | 243 | 69 | 6 | 146 | 382 | 71 | 280 | 1.54e-71 | 226 |
| MS.gene97387.t1 | MTR_3g111160 | 57.895 | 228 | 81 | 7 | 184 | 406 | 1 | 218 | 1.59e-71 | 224 |
| MS.gene97387.t1 | MTR_2g046410 | 55.607 | 214 | 78 | 6 | 200 | 406 | 144 | 347 | 1.19e-69 | 223 |
| MS.gene97387.t1 | MTR_3g099970 | 57.711 | 201 | 60 | 5 | 144 | 342 | 21 | 198 | 5.55e-65 | 206 |
| MS.gene97387.t1 | MTR_3g111150 | 58.333 | 180 | 48 | 3 | 18 | 197 | 1 | 153 | 2.23e-62 | 199 |
| MS.gene97387.t1 | MTR_3g101020 | 56.021 | 191 | 50 | 6 | 217 | 406 | 1 | 158 | 1.53e-57 | 186 |
| MS.gene97387.t1 | MTR_3g101150 | 62.195 | 164 | 50 | 5 | 251 | 408 | 2 | 159 | 7.87e-54 | 176 |
| MS.gene97387.t1 | MTR_3g102870 | 58.333 | 156 | 55 | 4 | 208 | 360 | 3 | 151 | 2.91e-51 | 170 |
| MS.gene97387.t1 | MTR_3g100990 | 70.400 | 125 | 37 | 0 | 16 | 140 | 5 | 129 | 4.50e-51 | 179 |
| MS.gene97387.t1 | MTR_4g093550 | 62.791 | 86 | 32 | 0 | 14 | 99 | 4 | 89 | 6.37e-27 | 103 |
| MS.gene97387.t1 | MTR_6g046890 | 62.500 | 64 | 24 | 0 | 33 | 96 | 16 | 79 | 1.39e-18 | 82.0 |
| MS.gene97387.t1 | MTR_3g101140 | 61.765 | 68 | 24 | 2 | 340 | 406 | 48 | 114 | 5.71e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97387.t1 | AT1G47710 | 49.510 | 408 | 191 | 6 | 4 | 406 | 20 | 417 | 5.20e-132 | 385 |
| MS.gene97387.t1 | AT1G47710 | 50.000 | 398 | 184 | 6 | 14 | 406 | 3 | 390 | 2.27e-131 | 383 |
| MS.gene97387.t1 | AT3G45220 | 44.169 | 403 | 195 | 9 | 16 | 405 | 5 | 390 | 1.90e-109 | 327 |
| MS.gene97387.t1 | AT2G26390 | 45.274 | 402 | 188 | 11 | 16 | 405 | 5 | 386 | 2.22e-109 | 327 |
| MS.gene97387.t1 | AT2G25240 | 45.980 | 398 | 187 | 10 | 16 | 405 | 5 | 382 | 2.98e-108 | 324 |
| MS.gene97387.t1 | AT1G62170 | 43.280 | 372 | 174 | 7 | 40 | 405 | 91 | 431 | 2.98e-95 | 292 |
| MS.gene97387.t1 | AT2G14540 | 42.857 | 406 | 199 | 6 | 4 | 405 | 21 | 397 | 1.82e-94 | 289 |
| MS.gene97387.t1 | AT1G64030 | 42.857 | 399 | 191 | 11 | 14 | 405 | 3 | 371 | 9.91e-91 | 279 |
| MS.gene97387.t1 | AT1G62170 | 40.547 | 402 | 175 | 8 | 40 | 405 | 91 | 464 | 2.37e-90 | 281 |
| MS.gene97387.t1 | AT2G35580 | 40.806 | 397 | 184 | 12 | 16 | 405 | 19 | 371 | 5.92e-85 | 264 |
| MS.gene97387.t1 | AT1G64010 | 43.946 | 223 | 96 | 5 | 184 | 405 | 1 | 195 | 1.76e-54 | 179 |
| MS.gene97387.t1 | AT1G64010 | 42.308 | 208 | 91 | 5 | 199 | 405 | 2 | 181 | 2.14e-46 | 158 |
| MS.gene97387.t1 | AT1G62160 | 40.686 | 204 | 90 | 5 | 206 | 405 | 42 | 218 | 7.26e-34 | 126 |
| MS.gene97387.t1 | AT1G63280 | 55.652 | 115 | 46 | 3 | 144 | 256 | 9 | 120 | 2.59e-33 | 121 |
| MS.gene97387.t1 | AT1G51330 | 54.128 | 109 | 46 | 3 | 144 | 249 | 32 | 139 | 2.82e-29 | 113 |
| MS.gene97387.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 21 | 130 | 10 | 120 | 7.09e-13 | 65.5 |
Find 78 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGAAGAAGTGAATTTA+TGG | 0.232229 | 3.1:-10213493 | MS.gene97387:CDS |
| AATCGTATCTAATGATTATA+AGG | 0.286766 | 3.1:-10214032 | MS.gene97387:CDS |
| GTTGAGATGCTCAGTTGATT+TGG | 0.290547 | 3.1:+10214180 | None:intergenic |
| CCTTGCCTCTCTTTCGTCAA+TGG | 0.302081 | 3.1:-10214100 | MS.gene97387:CDS |
| GCGAATGCACTGTACTTTAA+AGG | 0.316476 | 3.1:-10213392 | MS.gene97387:CDS |
| ACACCTCCAATATCTGAAAA+AGG | 0.321312 | 3.1:+10212978 | None:intergenic |
| AATAAAGAAATATTGAATCT+TGG | 0.366043 | 3.1:+10213059 | None:intergenic |
| AAAAGACTTGTGAAATATCT+TGG | 0.368731 | 3.1:+10212920 | None:intergenic |
| AAGTTCAAGTTAGTGCCTTC+CGG | 0.382959 | 3.1:-10213085 | MS.gene97387:CDS |
| TTGTCTTCACCTTGCTCATA+AGG | 0.385648 | 3.1:+10213221 | None:intergenic |
| TTCTTTAGAGAAGAGATGTT+TGG | 0.388693 | 3.1:+10214312 | None:intergenic |
| AATCATTAGATACGATTTGT+TGG | 0.398638 | 3.1:+10214038 | None:intergenic |
| GCTTTCAAAGATGAGGAGTA+TGG | 0.400025 | 3.1:-10212855 | MS.gene97387:CDS |
| TTTCTTACTGATGCAAAAGA+TGG | 0.408453 | 3.1:-10213176 | MS.gene97387:CDS |
| TCTGGAACTGTACTCTTCAT+TGG | 0.410398 | 3.1:-10212756 | MS.gene97387:CDS |
| AAATTGCTTCTCATAATAAC+TGG | 0.413173 | 3.1:+10213280 | None:intergenic |
| CTCTTTCGTCAATGGAGTGT+GGG | 0.427737 | 3.1:-10214092 | MS.gene97387:CDS |
| CTCTCCAATGCTGCTCCCTC+CGG | 0.438523 | 3.1:-10214127 | MS.gene97387:CDS |
| ACCACCGGAGGGAGCAGCAT+TGG | 0.442798 | 3.1:+10214123 | None:intergenic |
| TCGAGAAGCTGTTCTCTTGT+GGG | 0.445430 | 3.1:+10214214 | None:intergenic |
| TTGATCAGAGACGATCTGTC+TGG | 0.453137 | 3.1:-10212774 | MS.gene97387:CDS |
| CACTCCGAAGATAGAATTTG+TGG | 0.453884 | 3.1:-10212817 | MS.gene97387:CDS |
| CTCATAATAACTGGTCATGA+AGG | 0.454809 | 3.1:+10213289 | None:intergenic |
| GAAAGAGAGGCAAGGACCAC+CGG | 0.455855 | 3.1:+10214108 | None:intergenic |
| GTCGAGAAGCTGTTCTCTTG+TGG | 0.461285 | 3.1:+10214213 | None:intergenic |
| GATACGATTTGTTGGAAGGA+AGG | 0.462624 | 3.1:+10214046 | None:intergenic |
| TTTATTGAAGTAAATGAAGC+AGG | 0.473462 | 3.1:-10212900 | MS.gene97387:CDS |
| GCACTCAGCATGATCGCTGC+TGG | 0.478281 | 3.1:-10214247 | MS.gene97387:CDS |
| AAATATTGAATCTTGGAATC+CGG | 0.479824 | 3.1:+10213066 | None:intergenic |
| GGGAGCAGCATTGGAGAGGA+TGG | 0.479850 | 3.1:+10214132 | None:intergenic |
| CGATCATGCTGAGTGCAACT+TGG | 0.480286 | 3.1:+10214254 | None:intergenic |
| GCTTGAAGAAGTGAATTTAT+GGG | 0.483467 | 3.1:-10213492 | MS.gene97387:CDS |
| ATGATCGCTGCTGGCTCTGA+CGG | 0.486610 | 3.1:-10214238 | MS.gene97387:CDS |
| TCAGCCACAAATTCTATCTT+CGG | 0.492664 | 3.1:+10212813 | None:intergenic |
| AACTAAGTCATCAACTGAGC+CGG | 0.497028 | 3.1:+10213427 | None:intergenic |
| CACTGTACTTTAAAGGAGCA+TGG | 0.504436 | 3.1:-10213385 | MS.gene97387:CDS |
| TCTCTTTCGTCAATGGAGTG+TGG | 0.505142 | 3.1:-10214093 | MS.gene97387:CDS |
| CTTTGATTCACTGTGAGCCA+TGG | 0.505783 | 3.1:+10214399 | None:intergenic |
| ATTAGATACGATTTGTTGGA+AGG | 0.508632 | 3.1:+10214042 | None:intergenic |
| AGTGCAACTTGGAGGGAAAG+TGG | 0.521097 | 3.1:+10214265 | None:intergenic |
| TCATGCTGAGTGCAACTTGG+AGG | 0.524958 | 3.1:+10214257 | None:intergenic |
| GCTCAGTTGATTTGGAGAGA+AGG | 0.530799 | 3.1:+10214188 | None:intergenic |
| GGAAGGAAGGTTGCAGAGAA+CGG | 0.538634 | 3.1:+10214059 | None:intergenic |
| TCTACTATGCTGATGGAGCT+AGG | 0.541284 | 3.1:-10213011 | MS.gene97387:CDS |
| TCCAATGCTGCTCCCTCCGG+TGG | 0.541746 | 3.1:-10214124 | MS.gene97387:CDS |
| ATTGTTAAGTTTGATTGAGA+AGG | 0.552198 | 3.1:-10213153 | MS.gene97387:CDS |
| GTCTGTTGATTTCAAGAACA+AGG | 0.554531 | 3.1:-10213999 | MS.gene97387:CDS |
| GTGCAACTTGGAGGGAAAGT+GGG | 0.560670 | 3.1:+10214266 | None:intergenic |
| TGAAACTTCTACTATGCTGA+TGG | 0.560759 | 3.1:-10213018 | MS.gene97387:CDS |
| CTTCGTCTTCCTTATGAGCA+AGG | 0.564269 | 3.1:-10213230 | MS.gene97387:CDS |
| ACTAAGTCATCAACTGAGCC+GGG | 0.569577 | 3.1:+10213428 | None:intergenic |
| CATGCTGAGTGCAACTTGGA+GGG | 0.571755 | 3.1:+10214258 | None:intergenic |
| AGAAACGAGATGAGAAGCAA+AGG | 0.575505 | 3.1:+10214156 | None:intergenic |
| TCTGAATGGCAACTCTGTCA+AGG | 0.581715 | 3.1:-10213315 | MS.gene97387:CDS |
| TCATAATAACTGGTCATGAA+GGG | 0.584803 | 3.1:+10213290 | None:intergenic |
| AGAGAGGCAAGGACCACCGG+AGG | 0.589977 | 3.1:+10214111 | None:intergenic |
| TATCTTCGGAGTGTCGTCAC+AGG | 0.592557 | 3.1:+10212827 | None:intergenic |
| GGCAACTGCTTTCAAAGATG+AGG | 0.600631 | 3.1:-10212862 | MS.gene97387:CDS |
| GAGATGTTTGGCGATTCTGA+AGG | 0.601249 | 3.1:+10214324 | None:intergenic |
| CTTGAAATCAACAGACGACA+AGG | 0.603597 | 3.1:+10214006 | None:intergenic |
| TGCAACTTGGAGGGAAAGTG+GGG | 0.605885 | 3.1:+10214267 | None:intergenic |
| ACTGTACTTTAAAGGAGCAT+GGG | 0.607721 | 3.1:-10213384 | MS.gene97387:CDS |
| ATTCACTTCTTCAAGCACTT+CGG | 0.609522 | 3.1:+10213499 | None:intergenic |
| GTTTGATATTTCAGATACAG+AGG | 0.613869 | 3.1:-10213354 | MS.gene97387:CDS |
| AGTTAAGATTACATGACAAG+AGG | 0.614011 | 3.1:+10212720 | None:intergenic |
| CGGAGGGAGCAGCATTGGAG+AGG | 0.619755 | 3.1:+10214128 | None:intergenic |
| GTACTTTAAAGGAGCATGGG+AGG | 0.625570 | 3.1:-10213381 | MS.gene97387:CDS |
| ATTGAATCTTGGAATCCGGA+AGG | 0.629746 | 3.1:+10213070 | None:intergenic |
| AGCAGGTACTGAAGCTGCTG+CGG | 0.638818 | 3.1:-10212883 | MS.gene97387:CDS |
| TATGCTGATGGAGCTAGGAG+TGG | 0.644969 | 3.1:-10213006 | MS.gene97387:CDS |
| ACACTCCATTGACGAAAGAG+AGG | 0.648769 | 3.1:+10214095 | None:intergenic |
| GATGACTTAGTTGTGCTCAT+CGG | 0.655177 | 3.1:-10213416 | MS.gene97387:CDS |
| GAAATATCTTGGAAACGACA+AGG | 0.665998 | 3.1:+10212931 | None:intergenic |
| GAGAGGCAAGGACCACCGGA+GGG | 0.686020 | 3.1:+10214112 | None:intergenic |
| CTTGCTCATAAGGAAGACGA+AGG | 0.700277 | 3.1:+10213231 | None:intergenic |
| AAGTCATCAACTGAGCCGGG+TGG | 0.701911 | 3.1:+10213431 | None:intergenic |
| CCATTGACGAAAGAGAGGCA+AGG | 0.731733 | 3.1:+10214100 | None:intergenic |
| GAAATCAACAGACGACAAGG+TGG | 0.734878 | 3.1:+10214009 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGAAATATTGAATCT+TGG | + | chr3.1:10214069-10214088 | None:intergenic | 15.0% |
| !!! | TGTATTTTATATGGTTTTAA+AGG | - | chr3.1:10213600-10213619 | MS.gene97387:intron | 15.0% |
| !! | AAATATGTTGCTAAATAAGT+TGG | + | chr3.1:10213566-10213585 | None:intergenic | 20.0% |
| !! | AATCGTATCTAATGATTATA+AGG | - | chr3.1:10213093-10213112 | MS.gene97387:CDS | 20.0% |
| !! | CAGTAATATAAAACTATAAG+AGG | + | chr3.1:10213413-10213432 | None:intergenic | 20.0% |
| !!! | ACTGGTTTTTGTATTTTATA+TGG | - | chr3.1:10213591-10213610 | MS.gene97387:intron | 20.0% |
| ! | AAAAGACTTGTGAAATATCT+TGG | + | chr3.1:10214208-10214227 | None:intergenic | 25.0% |
| ! | AAATATTGAATCTTGGAATC+CGG | + | chr3.1:10214062-10214081 | None:intergenic | 25.0% |
| ! | AAATTGCTTCTCATAATAAC+TGG | + | chr3.1:10213848-10213867 | None:intergenic | 25.0% |
| ! | AATCATTAGATACGATTTGT+TGG | + | chr3.1:10213090-10213109 | None:intergenic | 25.0% |
| ! | ATTAGCAAGAAATCAAAGTA+GGG | + | chr3.1:10213191-10213210 | None:intergenic | 25.0% |
| ! | ATTGTTAAGTTTGATTGAGA+AGG | - | chr3.1:10213972-10213991 | MS.gene97387:intron | 25.0% |
| ! | GTGTTGTAAAAACTCAAATT+CGG | + | chr3.1:10214004-10214023 | None:intergenic | 25.0% |
| ! | TTTATTGAAGTAAATGAAGC+AGG | - | chr3.1:10214225-10214244 | MS.gene97387:CDS | 25.0% |
| !! | AAGTATCATTCTTTTCTCTT+TGG | + | chr3.1:10212753-10212772 | None:intergenic | 25.0% |
| !! | AGTATCATTCTTTTCTCTTT+GGG | + | chr3.1:10212752-10212771 | None:intergenic | 25.0% |
| !! | TATGATTTTCACATTCTGAA+TGG | - | chr3.1:10213796-10213815 | MS.gene97387:intron | 25.0% |
| !!! | AGTTTTATGAAAGCAATTGA+CGG | - | chr3.1:10213506-10213525 | MS.gene97387:CDS | 25.0% |
| !!! | CAATTTATCAGTGTTTTTGA+TGG | - | chr3.1:10213862-10213881 | MS.gene97387:intron | 25.0% |
| !!! | GTTTTACCTTTTTCAGATAT+TGG | - | chr3.1:10214141-10214160 | MS.gene97387:CDS | 25.0% |
| AGTAAAATTTGACGATCCTT+TGG | - | chr3.1:10213439-10213458 | MS.gene97387:CDS | 30.0% | |
| ATAAAAAATCTACTTCCACC+CGG | - | chr3.1:10213679-10213698 | MS.gene97387:intron | 30.0% | |
| ATTGAATAGTTGTATGCCAA+AGG | + | chr3.1:10213458-10213477 | None:intergenic | 30.0% | |
| CTCTGATCAAAAACAAGAAA+GGG | + | chr3.1:10214341-10214360 | None:intergenic | 30.0% | |
| GATTAGCAAGAAATCAAAGT+AGG | + | chr3.1:10213192-10213211 | None:intergenic | 30.0% | |
| GCTTGAAGAAGTGAATTTAT+GGG | - | chr3.1:10213633-10213652 | MS.gene97387:intron | 30.0% | |
| GTTTGATATTTCAGATACAG+AGG | - | chr3.1:10213771-10213790 | MS.gene97387:intron | 30.0% | |
| TAGCAACATATTTGCATAAC+TGG | - | chr3.1:10213573-10213592 | MS.gene97387:intron | 30.0% | |
| TCATAATAACTGGTCATGAA+GGG | + | chr3.1:10213838-10213857 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | + | chr3.1:10214342-10214361 | None:intergenic | 30.0% | |
| TGCTTGAAGAAGTGAATTTA+TGG | - | chr3.1:10213632-10213651 | MS.gene97387:intron | 30.0% | |
| TTTCTTACTGATGCAAAAGA+TGG | - | chr3.1:10213949-10213968 | MS.gene97387:intron | 30.0% | |
| ! | TTCTTTAGAGAAGAGATGTT+TGG | + | chr3.1:10212816-10212835 | None:intergenic | 30.0% |
| !! | AAGAGGCATTTGAATAACAA+AGG | + | chr3.1:10213396-10213415 | None:intergenic | 30.0% |
| !! | ATTAGATACGATTTGTTGGA+AGG | + | chr3.1:10213086-10213105 | None:intergenic | 30.0% |
| !! | TTCTGAAGGAAACTTTTGTT+TGG | + | chr3.1:10212790-10212809 | None:intergenic | 30.0% |
| !!! | TTACCTTTTTCAGATATTGG+AGG | - | chr3.1:10214144-10214163 | MS.gene97387:CDS | 30.0% |
| AAAGCAATTCCATGTATGTG+AGG | - | chr3.1:10213368-10213387 | MS.gene97387:CDS | 35.0% | |
| ACACCTCCAATATCTGAAAA+AGG | + | chr3.1:10214150-10214169 | None:intergenic | 35.0% | |
| ATTCACTTCTTCAAGCACTT+CGG | + | chr3.1:10213629-10213648 | None:intergenic | 35.0% | |
| CTCATAATAACTGGTCATGA+AGG | + | chr3.1:10213839-10213858 | None:intergenic | 35.0% | |
| GAAATATCTTGGAAACGACA+AGG | + | chr3.1:10214197-10214216 | None:intergenic | 35.0% | |
| TCAGCCACAAATTCTATCTT+CGG | + | chr3.1:10214315-10214334 | None:intergenic | 35.0% | |
| TGAAACTTCTACTATGCTGA+TGG | - | chr3.1:10214107-10214126 | MS.gene97387:CDS | 35.0% | |
| ! | ACTGTACTTTAAAGGAGCAT+GGG | - | chr3.1:10213741-10213760 | MS.gene97387:intron | 35.0% |
| ! | CATGGATTGCAATGAAAAGA+GGG | + | chr3.1:10213168-10213187 | None:intergenic | 35.0% |
| ! | CTAACTTGAACTTTTTGACG+AGG | + | chr3.1:10214033-10214052 | None:intergenic | 35.0% |
| !! | GTCTGTTGATTTCAAGAACA+AGG | - | chr3.1:10213126-10213145 | MS.gene97387:CDS | 35.0% |
| !! | TTTTTCAGATATTGGAGGTG+TGG | - | chr3.1:10214149-10214168 | MS.gene97387:CDS | 35.0% |
| AACTAAGTCATCAACTGAGC+CGG | + | chr3.1:10213701-10213720 | None:intergenic | 40.0% | |
| ACAAAGGTTCCTCACATACA+TGG | + | chr3.1:10213380-10213399 | None:intergenic | 40.0% | |
| AGAAACGAGATGAGAAGCAA+AGG | + | chr3.1:10212972-10212991 | None:intergenic | 40.0% | |
| ATTGAATCTTGGAATCCGGA+AGG | + | chr3.1:10214058-10214077 | None:intergenic | 40.0% | |
| CAAGAAATCAAAGTAGGGCA+TGG | + | chr3.1:10213186-10213205 | None:intergenic | 40.0% | |
| CACTCCGAAGATAGAATTTG+TGG | - | chr3.1:10214308-10214327 | MS.gene97387:CDS | 40.0% | |
| CTTGAAATCAACAGACGACA+AGG | + | chr3.1:10213122-10213141 | None:intergenic | 40.0% | |
| GATGACTTAGTTGTGCTCAT+CGG | - | chr3.1:10213709-10213728 | MS.gene97387:intron | 40.0% | |
| GCGAATGCACTGTACTTTAA+AGG | - | chr3.1:10213733-10213752 | MS.gene97387:intron | 40.0% | |
| GCTTTCAAAGATGAGGAGTA+TGG | - | chr3.1:10214270-10214289 | MS.gene97387:CDS | 40.0% | |
| GTTGAGATGCTCAGTTGATT+TGG | + | chr3.1:10212948-10212967 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr3.1:10213652-10213671 | MS.gene97387:intron | 40.0% | |
| TTGTCTTCACCTTGCTCATA+AGG | + | chr3.1:10213907-10213926 | None:intergenic | 40.0% | |
| ! | AAGTTCAAGTTAGTGCCTTC+CGG | - | chr3.1:10214040-10214059 | MS.gene97387:CDS | 40.0% |
| ! | CACTGTACTTTAAAGGAGCA+TGG | - | chr3.1:10213740-10213759 | MS.gene97387:intron | 40.0% |
| ! | GCATGGATTGCAATGAAAAG+AGG | + | chr3.1:10213169-10213188 | None:intergenic | 40.0% |
| ! | TATTGGAGGTGTGGCAAAAA+CGG | - | chr3.1:10214158-10214177 | MS.gene97387:CDS | 40.0% |
| ! | TCTGGAACTGTACTCTTCAT+TGG | - | chr3.1:10214369-10214388 | MS.gene97387:CDS | 40.0% |
| !! | GATACGATTTGTTGGAAGGA+AGG | + | chr3.1:10213082-10213101 | None:intergenic | 40.0% |
| ACACTCCATTGACGAAAGAG+AGG | + | chr3.1:10213033-10213052 | None:intergenic | 45.0% | |
| ACTAAGTCATCAACTGAGCC+GGG | + | chr3.1:10213700-10213719 | None:intergenic | 45.0% | |
| CTCTTTCGTCAATGGAGTGT+GGG | - | chr3.1:10213033-10213052 | MS.gene97387:CDS | 45.0% | |
| CTTCGTCTTCCTTATGAGCA+AGG | - | chr3.1:10213895-10213914 | MS.gene97387:intron | 45.0% | |
| CTTGCTCATAAGGAAGACGA+AGG | + | chr3.1:10213897-10213916 | None:intergenic | 45.0% | |
| GAAATCAACAGACGACAAGG+TGG | + | chr3.1:10213119-10213138 | None:intergenic | 45.0% | |
| GAGATGTTTGGCGATTCTGA+AGG | + | chr3.1:10212804-10212823 | None:intergenic | 45.0% | |
| GGCAACTGCTTTCAAAGATG+AGG | - | chr3.1:10214263-10214282 | MS.gene97387:CDS | 45.0% | |
| TCGAGAAGCTGTTCTCTTGT+GGG | + | chr3.1:10212914-10212933 | None:intergenic | 45.0% | |
| TCTACTATGCTGATGGAGCT+AGG | - | chr3.1:10214114-10214133 | MS.gene97387:CDS | 45.0% | |
| TCTCTTTCGTCAATGGAGTG+TGG | - | chr3.1:10213032-10213051 | MS.gene97387:CDS | 45.0% | |
| TCTGAATGGCAACTCTGTCA+AGG | - | chr3.1:10213810-10213829 | MS.gene97387:intron | 45.0% | |
| TTGATCAGAGACGATCTGTC+TGG | - | chr3.1:10214351-10214370 | MS.gene97387:CDS | 45.0% | |
| ! | GTACTTTAAAGGAGCATGGG+AGG | - | chr3.1:10213744-10213763 | MS.gene97387:intron | 45.0% |
| !! | GCTCAGTTGATTTGGAGAGA+AGG | + | chr3.1:10212940-10212959 | None:intergenic | 45.0% |
| !!! | TAGTATTTTTTTTTATTAAA+AGG | + | chr3.1:10213297-10213316 | None:intergenic | 5.0% |
| AGTGCAACTTGGAGGGAAAG+TGG | + | chr3.1:10212863-10212882 | None:intergenic | 50.0% | |
| CATGCTGAGTGCAACTTGGA+GGG | + | chr3.1:10212870-10212889 | None:intergenic | 50.0% | |
| CCATTGACGAAAGAGAGGCA+AGG | + | chr3.1:10213028-10213047 | None:intergenic | 50.0% | |
| CCTTGCCTCTCTTTCGTCAA+TGG | - | chr3.1:10213025-10213044 | MS.gene97387:CDS | 50.0% | |
| CGATCATGCTGAGTGCAACT+TGG | + | chr3.1:10212874-10212893 | None:intergenic | 50.0% | |
| GGAAGGAAGGTTGCAGAGAA+CGG | + | chr3.1:10213069-10213088 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTCTCTTG+TGG | + | chr3.1:10212915-10212934 | None:intergenic | 50.0% | |
| GTGCAACTTGGAGGGAAAGT+GGG | + | chr3.1:10212862-10212881 | None:intergenic | 50.0% | |
| TATGCTGATGGAGCTAGGAG+TGG | - | chr3.1:10214119-10214138 | MS.gene97387:CDS | 50.0% | |
| TCATGCTGAGTGCAACTTGG+AGG | + | chr3.1:10212871-10212890 | None:intergenic | 50.0% | |
| TGCAACTTGGAGGGAAAGTG+GGG | + | chr3.1:10212861-10212880 | None:intergenic | 50.0% | |
| !! | TATCTTCGGAGTGTCGTCAC+AGG | + | chr3.1:10214301-10214320 | None:intergenic | 50.0% |
| AAGTCATCAACTGAGCCGGG+TGG | + | chr3.1:10213697-10213716 | None:intergenic | 55.0% | |
| GAAAGAGAGGCAAGGACCAC+CGG | + | chr3.1:10213020-10213039 | None:intergenic | 55.0% | |
| ! | TGGAGGTGTGGCAAAAACGG+TGG | - | chr3.1:10214161-10214180 | MS.gene97387:CDS | 55.0% |
| !! | AGCAGGTACTGAAGCTGCTG+CGG | - | chr3.1:10214242-10214261 | MS.gene97387:CDS | 55.0% |
| !! | ATGATCGCTGCTGGCTCTGA+CGG | - | chr3.1:10212887-10212906 | MS.gene97387:CDS | 55.0% |
| CTCTCCAATGCTGCTCCCTC+CGG | - | chr3.1:10212998-10213017 | MS.gene97387:CDS | 60.0% | |
| GCACTCAGCATGATCGCTGC+TGG | - | chr3.1:10212878-10212897 | MS.gene97387:CDS | 60.0% | |
| GGTGTGGCAAAAACGGTGGC+TGG | - | chr3.1:10214165-10214184 | MS.gene97387:CDS | 60.0% | |
| ! | GGGAGCAGCATTGGAGAGGA+TGG | + | chr3.1:10212996-10213015 | None:intergenic | 60.0% |
| ACCACCGGAGGGAGCAGCAT+TGG | + | chr3.1:10213005-10213024 | None:intergenic | 65.0% | |
| AGAGAGGCAAGGACCACCGG+AGG | + | chr3.1:10213017-10213036 | None:intergenic | 65.0% | |
| GAGAGGCAAGGACCACCGGA+GGG | + | chr3.1:10213016-10213035 | None:intergenic | 65.0% | |
| TCCAATGCTGCTCCCTCCGG+TGG | - | chr3.1:10213001-10213020 | MS.gene97387:CDS | 65.0% | |
| ! | CGGAGGGAGCAGCATTGGAG+AGG | + | chr3.1:10213000-10213019 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10212728 | 10214419 | 10212728 | ID=MS.gene97387 |
| chr3.1 | mRNA | 10212728 | 10214419 | 10212728 | ID=MS.gene97387.t1;Parent=MS.gene97387 |
| chr3.1 | exon | 10213991 | 10214419 | 10213991 | ID=MS.gene97387.t1.exon1;Parent=MS.gene97387.t1 |
| chr3.1 | CDS | 10213991 | 10214419 | 10213991 | ID=cds.MS.gene97387.t1;Parent=MS.gene97387.t1 |
| chr3.1 | exon | 10212728 | 10213525 | 10212728 | ID=MS.gene97387.t1.exon2;Parent=MS.gene97387.t1 |
| chr3.1 | CDS | 10212728 | 10213525 | 10212728 | ID=cds.MS.gene97387.t1;Parent=MS.gene97387.t1 |
| Gene Sequence |
| Protein sequence |
