Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97394.t1 | RHN65706.1 | 97.6 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 1.40E-83 | 318.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97394.t1 | O80366 | 65.2 | 161 | 54 | 2 | 2 | 160 | 7 | 167 | 1.5e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97394.t1 | A0A396IJ66 | 97.6 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 9.9e-84 | 318.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene97394.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene97394 | 0.81201 | 5.26E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene97394 | 0.815853 | 7.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97394.t1 | MTR_3g015490 | 92.814 | 167 | 9 | 1 | 1 | 167 | 1 | 164 | 5.26e-110 | 310 |
| MS.gene97394.t1 | MTR_8g038620 | 74.545 | 165 | 41 | 1 | 3 | 167 | 8 | 171 | 1.57e-84 | 246 |
| MS.gene97394.t1 | MTR_7g490310 | 67.901 | 162 | 50 | 1 | 2 | 163 | 7 | 166 | 1.20e-77 | 231 |
| MS.gene97394.t1 | MTR_6g007460 | 55.224 | 201 | 28 | 3 | 3 | 150 | 10 | 201 | 1.97e-66 | 201 |
| MS.gene97394.t1 | MTR_3g088630 | 58.491 | 159 | 52 | 3 | 3 | 150 | 21 | 176 | 1.47e-58 | 182 |
| MS.gene97394.t1 | MTR_5g036480 | 56.643 | 143 | 57 | 1 | 3 | 145 | 15 | 152 | 5.21e-53 | 168 |
| MS.gene97394.t1 | MTR_3g078613 | 50.307 | 163 | 72 | 2 | 1 | 163 | 20 | 173 | 3.76e-51 | 162 |
| MS.gene97394.t1 | MTR_1g049100 | 55.696 | 158 | 58 | 4 | 3 | 159 | 7 | 153 | 4.98e-51 | 162 |
| MS.gene97394.t1 | MTR_4g106590 | 52.439 | 164 | 68 | 3 | 2 | 164 | 24 | 178 | 2.70e-50 | 160 |
| MS.gene97394.t1 | MTR_3g093860 | 55.634 | 142 | 46 | 3 | 5 | 141 | 19 | 148 | 4.12e-50 | 158 |
| MS.gene97394.t1 | MTR_3g078613 | 50.000 | 164 | 72 | 3 | 1 | 163 | 20 | 174 | 2.74e-49 | 158 |
| MS.gene97394.t1 | MTR_4g051330 | 98.701 | 77 | 1 | 0 | 91 | 167 | 77 | 153 | 1.25e-48 | 154 |
| MS.gene97394.t1 | MTR_4g061360 | 29.927 | 137 | 78 | 2 | 6 | 142 | 91 | 209 | 1.75e-14 | 70.5 |
| MS.gene97394.t1 | MTR_8g024260 | 27.143 | 140 | 84 | 1 | 6 | 145 | 38 | 159 | 1.78e-14 | 70.5 |
| MS.gene97394.t1 | MTR_1g067110 | 27.737 | 137 | 81 | 1 | 6 | 142 | 87 | 205 | 5.47e-13 | 66.2 |
| MS.gene97394.t1 | MTR_1g067110 | 27.737 | 137 | 81 | 1 | 6 | 142 | 87 | 205 | 7.39e-13 | 65.9 |
| MS.gene97394.t1 | MTR_3g092780 | 27.083 | 144 | 87 | 2 | 4 | 147 | 56 | 181 | 1.21e-12 | 65.1 |
| MS.gene97394.t1 | MTR_3g092780 | 27.083 | 144 | 87 | 2 | 4 | 147 | 56 | 181 | 1.21e-12 | 65.1 |
| MS.gene97394.t1 | MTR_3g092780 | 27.333 | 150 | 91 | 2 | 4 | 153 | 56 | 187 | 1.79e-12 | 64.7 |
| MS.gene97394.t1 | MTR_3g092780 | 27.333 | 150 | 91 | 2 | 4 | 153 | 56 | 187 | 1.81e-12 | 64.7 |
| MS.gene97394.t1 | MTR_7g118260 | 24.074 | 162 | 103 | 2 | 1 | 162 | 13 | 154 | 3.91e-12 | 63.5 |
| MS.gene97394.t1 | MTR_1g013180 | 28.671 | 143 | 81 | 3 | 6 | 148 | 162 | 283 | 2.75e-11 | 61.2 |
| MS.gene97394.t1 | MTR_1g032570 | 28.125 | 160 | 93 | 4 | 2 | 161 | 13 | 150 | 3.13e-11 | 61.2 |
| MS.gene97394.t1 | MTR_7g118260 | 25.352 | 142 | 86 | 2 | 1 | 142 | 13 | 134 | 3.96e-11 | 60.8 |
| MS.gene97394.t1 | MTR_8g079940 | 26.207 | 145 | 86 | 3 | 2 | 146 | 27 | 150 | 9.12e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97394.t1 | AT3G57040 | 69.799 | 149 | 42 | 2 | 2 | 148 | 7 | 154 | 2.91e-71 | 215 |
| MS.gene97394.t1 | AT3G57040 | 69.799 | 149 | 42 | 2 | 2 | 148 | 7 | 154 | 2.91e-71 | 215 |
| MS.gene97394.t1 | AT2G41310 | 64.430 | 149 | 52 | 1 | 2 | 150 | 7 | 154 | 4.62e-67 | 204 |
| MS.gene97394.t1 | AT1G59940 | 57.233 | 159 | 54 | 4 | 3 | 160 | 32 | 177 | 2.04e-56 | 177 |
| MS.gene97394.t1 | AT1G59940 | 57.962 | 157 | 52 | 4 | 3 | 158 | 124 | 267 | 1.46e-54 | 175 |
| MS.gene97394.t1 | AT1G10470 | 55.556 | 162 | 57 | 5 | 1 | 161 | 17 | 164 | 2.94e-54 | 172 |
| MS.gene97394.t1 | AT1G10470 | 56.250 | 160 | 55 | 5 | 3 | 161 | 33 | 178 | 3.83e-54 | 172 |
| MS.gene97394.t1 | AT3G56380 | 55.634 | 142 | 55 | 2 | 3 | 144 | 19 | 152 | 2.95e-52 | 164 |
| MS.gene97394.t1 | AT3G48100 | 52.500 | 160 | 67 | 3 | 4 | 163 | 25 | 175 | 3.41e-52 | 164 |
| MS.gene97394.t1 | AT2G40670 | 53.521 | 142 | 60 | 1 | 3 | 144 | 28 | 163 | 2.84e-51 | 162 |
| MS.gene97394.t1 | AT5G62920 | 57.447 | 141 | 51 | 2 | 4 | 144 | 25 | 156 | 9.96e-51 | 161 |
| MS.gene97394.t1 | AT3G56380 | 55.245 | 143 | 55 | 3 | 3 | 144 | 19 | 153 | 1.68e-50 | 159 |
| MS.gene97394.t1 | AT2G40670 | 53.147 | 143 | 60 | 2 | 3 | 144 | 28 | 164 | 2.07e-49 | 157 |
| MS.gene97394.t1 | AT1G19050 | 50.000 | 158 | 69 | 2 | 3 | 159 | 23 | 171 | 3.55e-49 | 157 |
| MS.gene97394.t1 | AT1G74890 | 50.625 | 160 | 68 | 2 | 3 | 160 | 17 | 167 | 7.13e-49 | 157 |
| MS.gene97394.t1 | AT2G07440 | 66.667 | 60 | 20 | 0 | 91 | 150 | 9 | 68 | 4.05e-22 | 86.7 |
| MS.gene97394.t1 | AT1G10470 | 52.857 | 70 | 27 | 2 | 90 | 158 | 35 | 99 | 2.17e-16 | 73.2 |
| MS.gene97394.t1 | AT5G24470 | 28.777 | 139 | 79 | 3 | 6 | 144 | 54 | 172 | 4.94e-13 | 66.2 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 6.24e-12 | 63.2 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene97394.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene97394.t1 | AT2G46790 | 26.619 | 139 | 84 | 2 | 4 | 142 | 37 | 157 | 1.83e-11 | 61.6 |
| MS.gene97394.t1 | AT5G07210 | 30.000 | 140 | 76 | 3 | 5 | 144 | 17 | 134 | 2.04e-11 | 61.6 |
| MS.gene97394.t1 | AT2G46790 | 26.619 | 139 | 84 | 2 | 4 | 142 | 37 | 157 | 2.05e-11 | 61.6 |
| MS.gene97394.t1 | AT5G02810 | 26.277 | 137 | 83 | 2 | 6 | 142 | 80 | 198 | 3.53e-11 | 60.8 |
| MS.gene97394.t1 | AT2G25180 | 27.451 | 153 | 89 | 4 | 6 | 157 | 19 | 150 | 3.93e-11 | 60.8 |
Find 24 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCACAGTTTCATATTT+TGG | 0.112277 | 3.1:+10147856 | None:intergenic |
| TCAGTTACTGTGGTTGATTC+TGG | 0.242120 | 3.1:+10148407 | MS.gene97394:intron |
| CTCAAAACCTCTTCATTTCA+TGG | 0.264136 | 3.1:+10147923 | MS.gene97394:CDS |
| GGCTTTGAAGTTTCTTGGTT+TGG | 0.274386 | 3.1:+10148436 | MS.gene97394:CDS |
| ACTAAGGCTTTGAAGTTTCT+TGG | 0.296459 | 3.1:+10148431 | MS.gene97394:CDS |
| GGTTACCTGTTAATCCTTGA+TGG | 0.331015 | 3.1:-10149309 | None:intergenic |
| TGTGGTTGATTCTGGTACTA+AGG | 0.342411 | 3.1:+10148415 | MS.gene97394:CDS |
| TTAACATCTGATTGTTGAAC+TGG | 0.359149 | 3.1:-10149480 | None:intergenic |
| AGATCATAGCCTGTCATTCC+TGG | 0.369947 | 3.1:-10148672 | None:intergenic |
| ATGTTCCATCAAGGATTAAC+AGG | 0.384039 | 3.1:+10149304 | MS.gene97394:CDS |
| GTTTCTGCAGCAATAGTTTG+AGG | 0.420290 | 3.1:-10148485 | None:intergenic |
| TACTGTATGCCAGGAATGAC+AGG | 0.454246 | 3.1:+10148663 | MS.gene97394:CDS |
| TGAATCAGATGCTTAGAAGA+AGG | 0.516221 | 3.1:+10149435 | MS.gene97394:intron |
| ATAACTGATTACTGTATGCC+AGG | 0.518630 | 3.1:+10148654 | MS.gene97394:CDS |
| ACCTAATCAACAACAAAAGA+AGG | 0.519626 | 3.1:+10149550 | MS.gene97394:CDS |
| TTGACAGAATGTTGATTGAA+AGG | 0.523765 | 3.1:+10147897 | MS.gene97394:CDS |
| AAAATTACCATGAAATGAAG+AGG | 0.534519 | 3.1:-10147930 | None:intergenic |
| TATTGCTGCAGAAACAGATC+AGG | 0.546049 | 3.1:+10148493 | MS.gene97394:CDS |
| TCTTGGTTTGGTTGAAGATG+AGG | 0.555035 | 3.1:+10148448 | MS.gene97394:CDS |
| CCTCAGAGAATGTTCCATCA+AGG | 0.587746 | 3.1:+10149295 | MS.gene97394:CDS |
| TCTGAGGACATAATCACCAC+TGG | 0.603381 | 3.1:-10149279 | None:intergenic |
| GTTTGGTTGAAGATGAGGTG+AGG | 0.669904 | 3.1:+10148453 | MS.gene97394:CDS |
| TTCTCTTAAAGACATACCAG+TGG | 0.689344 | 3.1:+10149263 | MS.gene97394:CDS |
| CCTTGATGGAACATTCTCTG+AGG | 0.703773 | 3.1:-10149295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAAAATTTAGAAAATA+TGG | + | chr3.1:10148128-10148147 | MS.gene97394:intron | 10.0% |
| !! | CTTTATTAATGTTAAAAATT+TGG | + | chr3.1:10148568-10148587 | MS.gene97394:intron | 10.0% |
| !!! | CAAATTTTTAACATTAATAA+AGG | - | chr3.1:10148570-10148589 | None:intergenic | 10.0% |
| !! | ACAAAAATAATATGATTATG+TGG | + | chr3.1:10148183-10148202 | MS.gene97394:intron | 15.0% |
| !! | TATGAATACTATCAAAAAAT+TGG | - | chr3.1:10149169-10149188 | None:intergenic | 15.0% |
| !! | TTAATGTCATGATATTATTA+AGG | - | chr3.1:10149333-10149352 | None:intergenic | 15.0% |
| !!! | AATTTTGAACGATTTTTTTT+TGG | + | chr3.1:10148228-10148247 | MS.gene97394:intron | 15.0% |
| !!! | ATTCAAATAATTTTGTGAAT+TGG | + | chr3.1:10148007-10148026 | MS.gene97394:intron | 15.0% |
| !!! | TATTTGAATTTTGATGTAAA+AGG | - | chr3.1:10147996-10148015 | None:intergenic | 15.0% |
| !! | AAAAATCAAGGTAAATTCAT+TGG | + | chr3.1:10148701-10148720 | MS.gene97394:intron | 20.0% |
| !! | AAAATCAAAAATTTGTGGTT+TGG | - | chr3.1:10148947-10148966 | None:intergenic | 20.0% |
| !! | AAATTTCGAATTCAAAACTT+TGG | + | chr3.1:10149361-10149380 | MS.gene97394:intron | 20.0% |
| !! | AATGATTAGACTAATACATA+TGG | + | chr3.1:10148532-10148551 | MS.gene97394:intron | 20.0% |
| !! | GGTAATATGTAATGTTTATT+TGG | + | chr3.1:10148249-10148268 | MS.gene97394:intron | 20.0% |
| !! | TCAACAAAAAAGTAAAATTG+CGG | + | chr3.1:10148966-10148985 | MS.gene97394:intron | 20.0% |
| !! | TGTTGAAAATCAAAAATTTG+TGG | - | chr3.1:10148952-10148971 | None:intergenic | 20.0% |
| !!! | AAAACCACAATTTAAAATCT+TGG | - | chr3.1:10148912-10148931 | None:intergenic | 20.0% |
| !!! | AAATTTTGTAAAGAACAAAC+TGG | - | chr3.1:10148083-10148102 | None:intergenic | 20.0% |
| !!! | AGAAAATATATTTGATTTGC+AGG | + | chr3.1:10149233-10149252 | MS.gene97394:intron | 20.0% |
| !!! | ATGTATTAGTCTAATCATTT+AGG | - | chr3.1:10148531-10148550 | None:intergenic | 20.0% |
| !!! | TATTTGAAAATAGTTTGTGT+TGG | + | chr3.1:10148725-10148744 | MS.gene97394:intron | 20.0% |
| !!! | TTTTCTCTCATATTTTTTAG+AGG | + | chr3.1:10147952-10147971 | MS.gene97394:intron | 20.0% |
| ! | AAAATTACCATGAAATGAAG+AGG | - | chr3.1:10147933-10147952 | None:intergenic | 25.0% |
| ! | AGATTATAACTATCCCAATT+GGG | - | chr3.1:10149120-10149139 | None:intergenic | 25.0% |
| ! | TAGATTATAACTATCCCAAT+TGG | - | chr3.1:10149121-10149140 | None:intergenic | 25.0% |
| ! | TGAAATTGACAAGACAATAA+TGG | - | chr3.1:10148797-10148816 | None:intergenic | 25.0% |
| ! | TGCAAAAACAATTAACCAAA+AGG | - | chr3.1:10148612-10148631 | None:intergenic | 25.0% |
| !! | ATCATCAGAATTTGAAATGA+TGG | + | chr3.1:10148825-10148844 | MS.gene97394:intron | 25.0% |
| !! | ATGACCAAGATTTTAAATTG+TGG | + | chr3.1:10148905-10148924 | MS.gene97394:intron | 25.0% |
| !! | GTCTTGTCAATTTCAAATTT+TGG | + | chr3.1:10148802-10148821 | MS.gene97394:intron | 25.0% |
| !! | TCATCAGAATTTGAAATGAT+GGG | + | chr3.1:10148826-10148845 | MS.gene97394:intron | 25.0% |
| !! | TTTTGTAATTTCAGTTACTG+TGG | + | chr3.1:10148397-10148416 | MS.gene97394:intron | 25.0% |
| !!! | ATATGATTATGTGGTTTGTT+TGG | + | chr3.1:10148192-10148211 | MS.gene97394:intron | 25.0% |
| !!! | TTTTGGTTAATTGTTTTTGC+AGG | + | chr3.1:10148611-10148630 | MS.gene97394:intron | 25.0% |
| ACCTAATCAACAACAAAAGA+AGG | + | chr3.1:10149550-10149569 | MS.gene97394:CDS | 30.0% | |
| CTCGATTATATGCAATACTA+AGG | - | chr3.1:10149004-10149023 | None:intergenic | 30.0% | |
| GGATATCCAAAAAGGAAAAA+AGG | - | chr3.1:10149085-10149104 | None:intergenic | 30.0% | |
| TCTAAGCATCTGATTCAATA+AGG | - | chr3.1:10149432-10149451 | None:intergenic | 30.0% | |
| TGATGTTCCAAGTTATTACT+TGG | + | chr3.1:10148296-10148315 | MS.gene97394:intron | 30.0% | |
| TTAACATCTGATTGTTGAAC+TGG | - | chr3.1:10149483-10149502 | None:intergenic | 30.0% | |
| TTTCGAATTCAAAACTTTGG+AGG | + | chr3.1:10149364-10149383 | MS.gene97394:intron | 30.0% | |
| ! | ACTTTTGTCTTCAACAAATG+TGG | - | chr3.1:10149516-10149535 | None:intergenic | 30.0% |
| ! | TTGACAGAATGTTGATTGAA+AGG | + | chr3.1:10147897-10147916 | MS.gene97394:CDS | 30.0% |
| ! | TTTTTCCTTTTTGGATATCC+CGG | + | chr3.1:10149085-10149104 | MS.gene97394:intron | 30.0% |
| !! | GATGATGATGTTAATCCTTT+TGG | + | chr3.1:10148594-10148613 | MS.gene97394:intron | 30.0% |
| !!! | TCCTTCTTTTGTTGTTGATT+AGG | - | chr3.1:10149554-10149573 | None:intergenic | 30.0% |
| AACTTGGAACATCATCTCTA+AGG | - | chr3.1:10148290-10148309 | None:intergenic | 35.0% | |
| ATAACTGATTACTGTATGCC+AGG | + | chr3.1:10148654-10148673 | MS.gene97394:CDS | 35.0% | |
| ATGTTCCATCAAGGATTAAC+AGG | + | chr3.1:10149304-10149323 | MS.gene97394:CDS | 35.0% | |
| CTCAAAACCTCTTCATTTCA+TGG | + | chr3.1:10147923-10147942 | MS.gene97394:CDS | 35.0% | |
| GTGTGTTCCAAGTAATAACT+TGG | - | chr3.1:10148306-10148325 | None:intergenic | 35.0% | |
| TGAATCAGATGCTTAGAAGA+AGG | + | chr3.1:10149435-10149454 | MS.gene97394:intron | 35.0% | |
| TGATCTGCTGAGAAAAATCA+AGG | + | chr3.1:10148689-10148708 | MS.gene97394:CDS | 35.0% | |
| TTCTCTTAAAGACATACCAG+TGG | + | chr3.1:10149263-10149282 | MS.gene97394:CDS | 35.0% | |
| ! | ATCATCTCTAAGGATTTCCA+CGG | - | chr3.1:10148280-10148299 | None:intergenic | 35.0% |
| ! | CTTGTTGTCAATCAAAATCG+AGG | + | chr3.1:10149052-10149071 | MS.gene97394:intron | 35.0% |
| !! | ACTAAGGCTTTGAAGTTTCT+TGG | + | chr3.1:10148431-10148450 | MS.gene97394:CDS | 35.0% |
| !!! | CGTAGACCTTTTTTCCTTTT+TGG | + | chr3.1:10149076-10149095 | MS.gene97394:intron | 35.0% |
| !!! | CTCGATTTTGATTGACAACA+AGG | - | chr3.1:10149054-10149073 | None:intergenic | 35.0% |
| CATAACCGGGATATCCAAAA+AGG | - | chr3.1:10149093-10149112 | None:intergenic | 40.0% | |
| GGTTACCTGTTAATCCTTGA+TGG | - | chr3.1:10149312-10149331 | None:intergenic | 40.0% | |
| GTTTCTGCAGCAATAGTTTG+AGG | - | chr3.1:10148488-10148507 | None:intergenic | 40.0% | |
| TATTGCTGCAGAAACAGATC+AGG | + | chr3.1:10148493-10148512 | MS.gene97394:CDS | 40.0% | |
| TGGAACACACTTCATACAGA+TGG | + | chr3.1:10148316-10148335 | MS.gene97394:intron | 40.0% | |
| ! | TCAGTTACTGTGGTTGATTC+TGG | + | chr3.1:10148407-10148426 | MS.gene97394:intron | 40.0% |
| ! | TGTGGTTGATTCTGGTACTA+AGG | + | chr3.1:10148415-10148434 | MS.gene97394:CDS | 40.0% |
| !! | GGCTTTGAAGTTTCTTGGTT+TGG | + | chr3.1:10148436-10148455 | MS.gene97394:CDS | 40.0% |
| !! | TCTTGGTTTGGTTGAAGATG+AGG | + | chr3.1:10148448-10148467 | MS.gene97394:CDS | 40.0% |
| AGATCATAGCCTGTCATTCC+TGG | - | chr3.1:10148675-10148694 | None:intergenic | 45.0% | |
| ATACAGATGGATCTGCACTG+CGG | + | chr3.1:10148329-10148348 | MS.gene97394:intron | 45.0% | |
| CCAATTGGGATGTCATAACC+GGG | - | chr3.1:10149106-10149125 | None:intergenic | 45.0% | |
| CCCAATTGGGATGTCATAAC+CGG | - | chr3.1:10149107-10149126 | None:intergenic | 45.0% | |
| CCGGTTATGACATCCCAATT+GGG | + | chr3.1:10149104-10149123 | MS.gene97394:intron | 45.0% | |
| CCTCAGAGAATGTTCCATCA+AGG | + | chr3.1:10149295-10149314 | MS.gene97394:CDS | 45.0% | |
| CCTTGATGGAACATTCTCTG+AGG | - | chr3.1:10149298-10149317 | None:intergenic | 45.0% | |
| GTTTGGTTGAAGATGAGGTG+AGG | + | chr3.1:10148453-10148472 | MS.gene97394:CDS | 45.0% | |
| TACTGTATGCCAGGAATGAC+AGG | + | chr3.1:10148663-10148682 | MS.gene97394:CDS | 45.0% | |
| TCTGAGGACATAATCACCAC+TGG | - | chr3.1:10149282-10149301 | None:intergenic | 45.0% | |
| ! | ATCTCTAAGGATTTCCACGG+CGG | - | chr3.1:10148277-10148296 | None:intergenic | 45.0% |
| ! | ATGTTTATTTGGAACCGCCG+TGG | + | chr3.1:10148260-10148279 | MS.gene97394:intron | 45.0% |
| !!! | AAATTTTTAACATTAATAAA+GGG | - | chr3.1:10148569-10148588 | None:intergenic | 5.0% |
| CCCGGTTATGACATCCCAAT+TGG | + | chr3.1:10149103-10149122 | MS.gene97394:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10147857 | 10149605 | 10147857 | ID=MS.gene97394 |
| chr3.1 | mRNA | 10147857 | 10149605 | 10147857 | ID=MS.gene97394.t1;Parent=MS.gene97394 |
| chr3.1 | exon | 10147857 | 10147944 | 10147857 | ID=MS.gene97394.t1.exon1;Parent=MS.gene97394.t1 |
| chr3.1 | CDS | 10147857 | 10147944 | 10147857 | ID=cds.MS.gene97394.t1;Parent=MS.gene97394.t1 |
| chr3.1 | exon | 10148411 | 10148514 | 10148411 | ID=MS.gene97394.t1.exon2;Parent=MS.gene97394.t1 |
| chr3.1 | CDS | 10148411 | 10148514 | 10148411 | ID=cds.MS.gene97394.t1;Parent=MS.gene97394.t1 |
| chr3.1 | exon | 10148633 | 10148710 | 10148633 | ID=MS.gene97394.t1.exon3;Parent=MS.gene97394.t1 |
| chr3.1 | CDS | 10148633 | 10148710 | 10148633 | ID=cds.MS.gene97394.t1;Parent=MS.gene97394.t1 |
| chr3.1 | exon | 10149255 | 10149325 | 10149255 | ID=MS.gene97394.t1.exon4;Parent=MS.gene97394.t1 |
| chr3.1 | CDS | 10149255 | 10149325 | 10149255 | ID=cds.MS.gene97394.t1;Parent=MS.gene97394.t1 |
| chr3.1 | exon | 10149443 | 10149605 | 10149443 | ID=MS.gene97394.t1.exon5;Parent=MS.gene97394.t1 |
| chr3.1 | CDS | 10149443 | 10149605 | 10149443 | ID=cds.MS.gene97394.t1;Parent=MS.gene97394.t1 |
| Gene Sequence |
| Protein sequence |
