AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97435

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97435.t1 MTR_8g009990 63.210 405 47 4 1 404 1 304 8.28e-167 469
MS.gene97435.t1 MTR_0186s0120 87.705 122 15 0 20 141 1 122 7.45e-72 221
MS.gene97435.t1 MTR_4g131870 92.308 91 7 0 1 91 1 91 1.20e-54 176
MS.gene97435.t1 MTR_1g054565 92.308 91 7 0 1 91 1 91 1.20e-54 176
MS.gene97435.t1 MTR_1g050130 91.209 91 8 0 1 91 1 91 6.84e-54 174
MS.gene97435.t1 MTR_3g014770 91.209 91 8 0 1 91 1 91 8.57e-54 174
MS.gene97435.t1 MTR_3g014760 32.292 192 118 3 22 213 9 188 1.87e-29 116
MS.gene97435.t1 MTR_4g131860 33.333 192 122 3 22 213 9 194 2.28e-29 116
MS.gene97435.t1 MTR_7g102530 33.333 192 122 3 22 213 9 194 2.61e-29 116
MS.gene97435.t1 MTR_1g050140 33.333 192 122 3 22 213 9 194 4.19e-29 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTCTTAGTACCTATAAT+TGG 0.159588 1.2:-72466269 MS.gene97435:CDS
GTTAATATCTACCAACTTAT+TGG 0.179369 1.2:+72466734 None:intergenic
GATACAGTTATACACATTTC+TGG 0.200591 1.2:-72466174 MS.gene97435:CDS
CTAGACCTTTGTTTGGCTTT+AGG 0.220943 1.2:-72466537 MS.gene97435:CDS
ATGCGTGGAAAACGCTTAAT+TGG 0.267383 1.2:+72466005 None:intergenic
TGAGGGAAAACAAACGAAAA+AGG 0.283246 1.2:-72466890 MS.gene97435:CDS
ACAAAGGTCTAGATGTTTAA+AGG 0.286497 1.2:+72466548 None:intergenic
TTAATATAACTGTGTGATTT+CGG 0.290724 1.2:+72466324 None:intergenic
GAGGATATTAAAAGCAAATA+AGG 0.296971 1.2:-72465623 MS.gene97435:CDS
CGCTCTTAGTACCTATAATT+GGG 0.312086 1.2:-72466268 MS.gene97435:CDS
GCTTTAGGTTTGCCTATTGT+AGG 0.336005 1.2:-72466522 MS.gene97435:CDS
GCTTAATTGGACCACTGGTT+AGG 0.336914 1.2:+72466018 None:intergenic
AACAGCAACACCCCAATTAT+AGG 0.367016 1.2:+72466257 None:intergenic
AACCATTCTCAAGTTGGTAT+TGG 0.370824 1.2:-72465757 MS.gene97435:CDS
AACACAAAGATTTGCTTTCC+CGG 0.375365 1.2:-72465669 MS.gene97435:CDS
TGGTTGCCCAGCCGTATTGC+AGG 0.381669 1.2:-72466154 MS.gene97435:intron
GTTTACCGGAAACTAGTGAT+AGG 0.386283 1.2:-72466494 MS.gene97435:CDS
CTACGTTGTCCCCTTCTTGA+AGG 0.389579 1.2:+72466397 None:intergenic
CTTCCTACTTCCATGCTACT+TGG 0.397148 1.2:+72465574 None:intergenic
TGATTAGTTGGTTGAGGACT+TGG 0.400972 1.2:-72465827 MS.gene97435:intron
GTGGATATGAAGACCTATAT+AGG 0.406234 1.2:-72466654 MS.gene97435:CDS
CTAACCCTATCACTAGTTTC+CGG 0.415358 1.2:+72466489 None:intergenic
AGTACCATTCATTCCTATAT+AGG 0.420459 1.2:+72466641 None:intergenic
TAAACATCTAGACCTTTGTT+TGG 0.421249 1.2:-72466544 MS.gene97435:CDS
CTTAATTGGACCACTGGTTA+GGG 0.433873 1.2:+72466019 None:intergenic
TAGGATTTAGAGTAGGCGTT+AGG 0.437463 1.2:-72466578 MS.gene97435:CDS
AATGAATGGTACTTTATTGA+AGG 0.438781 1.2:-72466631 MS.gene97435:CDS
ATCTACCAACTTATTGGTAC+GGG 0.443644 1.2:+72466740 None:intergenic
TTCAATACCTGCAATACGGC+TGG 0.445664 1.2:+72466147 None:intergenic
TCTTCATATCCACAAGATAT+CGG 0.446334 1.2:+72466664 None:intergenic
AGCAAATAAGGTTGACGGTA+GGG 0.449525 1.2:-72465611 MS.gene97435:CDS
TTTGCGCATCAGACAATGTT+CGG 0.454164 1.2:+72466712 None:intergenic
GGTAAACACTCTCCTACAAT+AGG 0.455224 1.2:+72466510 None:intergenic
AAGATTGATGCGGATAATGA+TGG 0.460099 1.2:-72465520 MS.gene97435:CDS
TTAATGTGATTAGTTGGTTG+AGG 0.466558 1.2:-72465833 MS.gene97435:intron
AGGTGGGATGCAAGTAGCTT+AGG 0.478297 1.2:-72466597 MS.gene97435:CDS
AATATTCAATACCTGCAATA+CGG 0.491166 1.2:+72466143 None:intergenic
TATTGTAGGAGAGTGTTTAC+CGG 0.495009 1.2:-72466508 MS.gene97435:CDS
AGAAAATGATGGGATGAAGT+TGG 0.497063 1.2:-72465470 MS.gene97435:CDS
TATCTACCAACTTATTGGTA+CGG 0.500669 1.2:+72466739 None:intergenic
TGAAGGAATTATTGCATAGG+TGG 0.500937 1.2:-72466614 MS.gene97435:CDS
ACCAACTTGAGAATGGTTAA+CGG 0.500987 1.2:+72465762 None:intergenic
AACATGACCTCCATCCACTT+TGG 0.501951 1.2:+72465971 None:intergenic
AAGCTGAAGGTCCTTCAAGA+AGG 0.502318 1.2:-72466408 MS.gene97435:CDS
ATCCTCAAGGATTGAAACCC+GGG 0.502408 1.2:+72465651 None:intergenic
CTCCAATACCAACTTGAGAA+TGG 0.505693 1.2:+72465755 None:intergenic
AAGACCTATATAGGAATGAA+TGG 0.515117 1.2:-72466645 MS.gene97435:CDS
GCCGTTAACCATTCTCAAGT+TGG 0.520859 1.2:-72465763 MS.gene97435:CDS
TTAAAAGCAAATAAGGTTGA+CGG 0.525394 1.2:-72465616 MS.gene97435:CDS
GGAAAAGCAGAAGAAAATGA+TGG 0.528960 1.2:-72465481 MS.gene97435:CDS
GATGGGTTGAAAAGTGAGGC+GGG 0.530008 1.2:-72465502 MS.gene97435:CDS
AAAACGCTTAATTGGACCAC+TGG 0.534869 1.2:+72466013 None:intergenic
AGCTGAAGGTCCTTCAAGAA+GGG 0.538805 1.2:-72466407 MS.gene97435:CDS
AACTCCGTTCCGATATCTTG+TGG 0.543524 1.2:-72466673 MS.gene97435:CDS
CAATCCTTGAGGATGATATG+AGG 0.550170 1.2:-72465642 MS.gene97435:CDS
CTTATATGGCTGAACATCAA+AGG 0.550916 1.2:-72465702 MS.gene97435:CDS
GGCATTTGAGTCTTTATCTG+TGG 0.552622 1.2:+72466762 None:intergenic
AGTAGCATGGAAGTAGGAAG+TGG 0.553313 1.2:-72465571 MS.gene97435:CDS
ACACAAAGATTTGCTTTCCC+GGG 0.556553 1.2:-72465668 MS.gene97435:CDS
TTTACCGGAAACTAGTGATA+GGG 0.559975 1.2:-72466493 MS.gene97435:CDS
GAAGGAATTATTGCATAGGT+GGG 0.560436 1.2:-72466613 MS.gene97435:CDS
TATTCCGATGCCAAGTAGCA+TGG 0.561626 1.2:-72465584 MS.gene97435:CDS
TTCCCGGGTTTCAATCCTTG+AGG 0.561883 1.2:-72465653 MS.gene97435:CDS
CATCCTCAAGGATTGAAACC+CGG 0.563868 1.2:+72465650 None:intergenic
AAGCAAATAAGGTTGACGGT+AGG 0.567979 1.2:-72465612 MS.gene97435:CDS
AATGCCCCGTACCAATAAGT+TGG 0.573173 1.2:-72466745 MS.gene97435:CDS
ATATCCTCATATCATCCTCA+AGG 0.575345 1.2:+72465638 None:intergenic
TATGGCTGAACATCAAAGGT+TGG 0.580692 1.2:-72465698 MS.gene97435:CDS
TTGGTCCAATTGTTAATGCG+TGG 0.585880 1.2:+72465990 None:intergenic
ACTTCCATGCTACTTGGCAT+CGG 0.586687 1.2:+72465580 None:intergenic
TATTGAAGGAATTATTGCAT+AGG 0.587809 1.2:-72466617 MS.gene97435:CDS
AATTGAAAATCTTAGTAGTG+CGG 0.588744 1.2:-72466223 MS.gene97435:CDS
TAGTGTACATTCTAAGCTGA+AGG 0.592478 1.2:-72466421 MS.gene97435:CDS
AACAATTGGACCAAAGTGGA+TGG 0.592872 1.2:-72465981 MS.gene97435:CDS
GAAAAGCAGAAGAAAATGAT+GGG 0.594943 1.2:-72465480 MS.gene97435:CDS
AGTAGCTTAGGATTTAGAGT+AGG 0.598830 1.2:-72466585 MS.gene97435:CDS
CATTAACAATTGGACCAAAG+TGG 0.599981 1.2:-72465985 MS.gene97435:CDS
TCAATACCTGCAATACGGCT+GGG 0.600754 1.2:+72466148 None:intergenic
TGATGAAGATGTTGGTGAAG+AGG 0.600999 1.2:-72465446 MS.gene97435:CDS
TAGAGTAGGCGTTAGGACTG+TGG 0.605350 1.2:-72466571 MS.gene97435:CDS
ATGCCAAGTAGCATGGAAGT+AGG 0.607349 1.2:-72465577 MS.gene97435:CDS
GGAAGTGGGTCAAAACATGT+AGG 0.610645 1.2:-72465556 MS.gene97435:CDS
GGTTCCAACACAACAAGACA+TGG 0.619501 1.2:-72465806 MS.gene97435:CDS
TGATGGGTTGAAAAGTGAGG+CGG 0.624829 1.2:-72465503 MS.gene97435:CDS
GTCATTTGATTAGATATGGG+CGG 0.632926 1.2:-72466054 MS.gene97435:intron
GAACATTGTCTGATGCGCAA+AGG 0.634154 1.2:-72466710 MS.gene97435:CDS
GCTGAAGGTCCTTCAAGAAG+GGG 0.635073 1.2:-72466406 MS.gene97435:CDS
AAGTTGGATGATGAAGATGT+TGG 0.645218 1.2:-72465454 MS.gene97435:CDS
CGGAAAATATAACACACACA+AGG 0.655010 1.2:+72466344 None:intergenic
AGATTGATGCGGATAATGAT+GGG 0.662184 1.2:-72465519 MS.gene97435:CDS
TAATGATGGGTTGAAAAGTG+AGG 0.663934 1.2:-72465506 MS.gene97435:CDS
AATTGGACCAAAGTGGATGG+AGG 0.668982 1.2:-72465978 MS.gene97435:CDS
GCAAACCTAAAGCCAAACAA+AGG 0.673782 1.2:+72466532 None:intergenic
GTAGCATGGAAGTAGGAAGT+GGG 0.674257 1.2:-72465570 MS.gene97435:CDS
GAACATTTATCCCTAACCAG+TGG 0.678694 1.2:-72466029 MS.gene97435:CDS
GCTCTTAGTACCTATAATTG+GGG 0.679670 1.2:-72466267 MS.gene97435:CDS
ATATCCACAAGATATCGGAA+CGG 0.702922 1.2:+72466669 None:intergenic
TCTACCAACTTATTGGTACG+GGG 0.719408 1.2:+72466741 None:intergenic
AAAGTGTAGTAAGATTGATG+CGG 0.726301 1.2:-72465530 MS.gene97435:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATAACTGTGTGATTT+CGG + chr1.2:72465990-72466009 None:intergenic 20.0%
!!! ATGTAATTGTTTGTGTTTTA+TGG - chr1.2:72465495-72465514 MS.gene97435:CDS 20.0%
!!! ATTTGTCATTTGATTAGATA+TGG - chr1.2:72466253-72466272 MS.gene97435:CDS 20.0%
!!! TTTGTCATTTGATTAGATAT+GGG - chr1.2:72466254-72466273 MS.gene97435:CDS 20.0%
! AATATTCAATACCTGCAATA+CGG + chr1.2:72466171-72466190 None:intergenic 25.0%
! AATGAATGGTACTTTATTGA+AGG - chr1.2:72465680-72465699 MS.gene97435:CDS 25.0%
! AATTGAAAATCTTAGTAGTG+CGG - chr1.2:72466088-72466107 MS.gene97435:intron 25.0%
! ACCAACTAATCACATTAAAT+AGG + chr1.2:72466476-72466495 None:intergenic 25.0%
! ACCTATTTAATGTGATTAGT+TGG - chr1.2:72466472-72466491 MS.gene97435:CDS 25.0%
! AGTATATTAACTCGGTAAAT+GGG - chr1.2:72466409-72466428 MS.gene97435:CDS 25.0%
! GAGGATATTAAAAGCAAATA+AGG - chr1.2:72466688-72466707 MS.gene97435:CDS 25.0%
! GTTAATATCTACCAACTTAT+TGG + chr1.2:72465580-72465599 None:intergenic 25.0%
! TAGTATATTAACTCGGTAAA+TGG - chr1.2:72466408-72466427 MS.gene97435:CDS 25.0%
! TATTGAAGGAATTATTGCAT+AGG - chr1.2:72465694-72465713 MS.gene97435:CDS 25.0%
! TTAAAAGCAAATAAGGTTGA+CGG - chr1.2:72466695-72466714 MS.gene97435:CDS 25.0%
! TTACCGAGTTAATATACTAA+AGG + chr1.2:72466407-72466426 None:intergenic 25.0%
! TTGCCTTTAGTATATTAACT+CGG - chr1.2:72466401-72466420 MS.gene97435:CDS 25.0%
!!! GCAGGTATTGAATATTAAAT+GGG - chr1.2:72466175-72466194 MS.gene97435:CDS 25.0%
!!! TGCAGGTATTGAATATTAAA+TGG - chr1.2:72466174-72466193 MS.gene97435:CDS 25.0%
AAAGTGTAGTAAGATTGATG+CGG - chr1.2:72466781-72466800 MS.gene97435:intron 30.0%
AAGACCTATATAGGAATGAA+TGG - chr1.2:72465666-72465685 MS.gene97435:CDS 30.0%
AAGCTTGCACATCAAAAAAA+GGG + chr1.2:72466592-72466611 None:intergenic 30.0%
ACAAAGGTCTAGATGTTTAA+AGG + chr1.2:72465766-72465785 None:intergenic 30.0%
AGTACCATTCATTCCTATAT+AGG + chr1.2:72465673-72465692 None:intergenic 30.0%
GAAAAGCAGAAGAAAATGAT+GGG - chr1.2:72466831-72466850 MS.gene97435:intron 30.0%
GATACAGTTATACACATTTC+TGG - chr1.2:72466137-72466156 MS.gene97435:intron 30.0%
GGTGAAGAGGAAAAAAAAAT+TGG - chr1.2:72466878-72466897 MS.gene97435:CDS 30.0%
TAAACATCTAGACCTTTGTT+TGG - chr1.2:72465767-72465786 MS.gene97435:CDS 30.0%
TAACCTTCGCATTTGAAAAA+AGG + chr1.2:72466377-72466396 None:intergenic 30.0%
TAAGCTTGCACATCAAAAAA+AGG + chr1.2:72466593-72466612 None:intergenic 30.0%
TATCTACCAACTTATTGGTA+CGG + chr1.2:72465575-72465594 None:intergenic 30.0%
TCTTCATATCCACAAGATAT+CGG + chr1.2:72465650-72465669 None:intergenic 30.0%
! CTGTATCATTCTTTTGTTGA+TGG + chr1.2:72466124-72466143 None:intergenic 30.0%
! TTAATGTGATTAGTTGGTTG+AGG - chr1.2:72466478-72466497 MS.gene97435:CDS 30.0%
! TTTTGATGTGCAAGCTTATA+TGG - chr1.2:72466595-72466614 MS.gene97435:CDS 30.0%
!!! AAACCTTTTTTCAAATGCGA+AGG - chr1.2:72466371-72466390 MS.gene97435:CDS 30.0%
AAGATTGATGCGGATAATGA+TGG - chr1.2:72466791-72466810 MS.gene97435:intron 35.0%
AAGTTGGATGATGAAGATGT+TGG - chr1.2:72466857-72466876 MS.gene97435:intron 35.0%
ACCAACTTGAGAATGGTTAA+CGG + chr1.2:72466552-72466571 None:intergenic 35.0%
ACGCTCTTAGTACCTATAAT+TGG - chr1.2:72466042-72466061 MS.gene97435:CDS 35.0%
AGATTGATGCGGATAATGAT+GGG - chr1.2:72466792-72466811 MS.gene97435:intron 35.0%
ATATCCACAAGATATCGGAA+CGG + chr1.2:72465645-72465664 None:intergenic 35.0%
ATATCCTCATATCATCCTCA+AGG + chr1.2:72466676-72466695 None:intergenic 35.0%
ATCTACCAACTTATTGGTAC+GGG + chr1.2:72465574-72465593 None:intergenic 35.0%
CATTAACAATTGGACCAAAG+TGG - chr1.2:72466326-72466345 MS.gene97435:CDS 35.0%
CGCTCTTAGTACCTATAATT+GGG - chr1.2:72466043-72466062 MS.gene97435:CDS 35.0%
CGGAAAATATAACACACACA+AGG + chr1.2:72465970-72465989 None:intergenic 35.0%
CTTATATGGCTGAACATCAA+AGG - chr1.2:72466609-72466628 MS.gene97435:CDS 35.0%
GAAGGAATTATTGCATAGGT+GGG - chr1.2:72465698-72465717 MS.gene97435:CDS 35.0%
GAGGGAAAACAAACGAAAAA+GGG - chr1.2:72465422-72465441 MS.gene97435:CDS 35.0%
GCTCTTAGTACCTATAATTG+GGG - chr1.2:72466044-72466063 MS.gene97435:CDS 35.0%
GGAAAAGCAGAAGAAAATGA+TGG - chr1.2:72466830-72466849 MS.gene97435:intron 35.0%
GTCATTTGATTAGATATGGG+CGG - chr1.2:72466257-72466276 MS.gene97435:CDS 35.0%
GTGGATATGAAGACCTATAT+AGG - chr1.2:72465657-72465676 MS.gene97435:CDS 35.0%
TAGTGTACATTCTAAGCTGA+AGG - chr1.2:72465890-72465909 MS.gene97435:intron 35.0%
TGAAGGAATTATTGCATAGG+TGG - chr1.2:72465697-72465716 MS.gene97435:CDS 35.0%
TGAGGGAAAACAAACGAAAA+AGG - chr1.2:72465421-72465440 MS.gene97435:CDS 35.0%
TTTACCGGAAACTAGTGATA+GGG - chr1.2:72465818-72465837 MS.gene97435:CDS 35.0%
! AACACAAAGATTTGCTTTCC+CGG - chr1.2:72466642-72466661 MS.gene97435:CDS 35.0%
! AGAAAATGATGGGATGAAGT+TGG - chr1.2:72466841-72466860 MS.gene97435:intron 35.0%
! AGTAGCTTAGGATTTAGAGT+AGG - chr1.2:72465726-72465745 MS.gene97435:CDS 35.0%
! GTTTTCCACGCATTAACAAT+TGG - chr1.2:72466316-72466335 MS.gene97435:CDS 35.0%
!! AACCATTCTCAAGTTGGTAT+TGG - chr1.2:72466554-72466573 MS.gene97435:CDS 35.0%
!! TAATGATGGGTTGAAAAGTG+AGG - chr1.2:72466805-72466824 MS.gene97435:intron 35.0%
!! TATTGTAGGAGAGTGTTTAC+CGG - chr1.2:72465803-72465822 MS.gene97435:CDS 35.0%
!! TTTTCCATGTCTTGTTGTGT+TGG + chr1.2:72466512-72466531 None:intergenic 35.0%
AAAACGCTTAATTGGACCAC+TGG + chr1.2:72466301-72466320 None:intergenic 40.0%
AACAATTGGACCAAAGTGGA+TGG - chr1.2:72466330-72466349 MS.gene97435:CDS 40.0%
AACAGCAACACCCCAATTAT+AGG + chr1.2:72466057-72466076 None:intergenic 40.0%
AAGCAAATAAGGTTGACGGT+AGG - chr1.2:72466699-72466718 MS.gene97435:CDS 40.0%
AGCAAATAAGGTTGACGGTA+GGG - chr1.2:72466700-72466719 MS.gene97435:CDS 40.0%
ATGCGTGGAAAACGCTTAAT+TGG + chr1.2:72466309-72466328 None:intergenic 40.0%
CAATCCTTGAGGATGATATG+AGG - chr1.2:72466669-72466688 MS.gene97435:CDS 40.0%
CGAAAAAGGGAATGTGTTGT+TGG - chr1.2:72465435-72465454 MS.gene97435:CDS 40.0%
CTCCAATACCAACTTGAGAA+TGG + chr1.2:72466559-72466578 None:intergenic 40.0%
GAACATTTATCCCTAACCAG+TGG - chr1.2:72466282-72466301 MS.gene97435:CDS 40.0%
GCAAACCTAAAGCCAAACAA+AGG + chr1.2:72465782-72465801 None:intergenic 40.0%
GGCATTTGAGTCTTTATCTG+TGG + chr1.2:72465552-72465571 None:intergenic 40.0%
GGTAAACACTCTCCTACAAT+AGG + chr1.2:72465804-72465823 None:intergenic 40.0%
GTTTACCGGAAACTAGTGAT+AGG - chr1.2:72465817-72465836 MS.gene97435:CDS 40.0%
TATGGCTGAACATCAAAGGT+TGG - chr1.2:72466613-72466632 MS.gene97435:CDS 40.0%
TCTACCAACTTATTGGTACG+GGG + chr1.2:72465573-72465592 None:intergenic 40.0%
TTGGTCCAATTGTTAATGCG+TGG + chr1.2:72466324-72466343 None:intergenic 40.0%
TTTGCGCATCAGACAATGTT+CGG + chr1.2:72465602-72465621 None:intergenic 40.0%
! ACACAAAGATTTGCTTTCCC+GGG - chr1.2:72466643-72466662 MS.gene97435:CDS 40.0%
! CTAACCCTATCACTAGTTTC+CGG + chr1.2:72465825-72465844 None:intergenic 40.0%
! CTTAATTGGACCACTGGTTA+GGG + chr1.2:72466295-72466314 None:intergenic 40.0%
! GCTTTAGGTTTGCCTATTGT+AGG - chr1.2:72465789-72465808 MS.gene97435:CDS 40.0%
! TAGGATTTAGAGTAGGCGTT+AGG - chr1.2:72465733-72465752 MS.gene97435:CDS 40.0%
! TGATGAAGATGTTGGTGAAG+AGG - chr1.2:72466865-72466884 MS.gene97435:intron 40.0%
! TGATTAGTTGGTTGAGGACT+TGG - chr1.2:72466484-72466503 MS.gene97435:CDS 40.0%
!! CTAGACCTTTGTTTGGCTTT+AGG - chr1.2:72465774-72465793 MS.gene97435:CDS 40.0%
AACATGACCTCCATCCACTT+TGG + chr1.2:72466343-72466362 None:intergenic 45.0%
AACTCCGTTCCGATATCTTG+TGG - chr1.2:72465638-72465657 MS.gene97435:CDS 45.0%
AAGCTGAAGGTCCTTCAAGA+AGG - chr1.2:72465903-72465922 MS.gene97435:intron 45.0%
AATGCCCCGTACCAATAAGT+TGG - chr1.2:72465566-72465585 MS.gene97435:CDS 45.0%
AATTGGACCAAAGTGGATGG+AGG - chr1.2:72466333-72466352 MS.gene97435:CDS 45.0%
AGCTGAAGGTCCTTCAAGAA+GGG - chr1.2:72465904-72465923 MS.gene97435:intron 45.0%
AGTAGCATGGAAGTAGGAAG+TGG - chr1.2:72466740-72466759 MS.gene97435:CDS 45.0%
ATCCTCAAGGATTGAAACCC+GGG + chr1.2:72466663-72466682 None:intergenic 45.0%
ATGCCAAGTAGCATGGAAGT+AGG - chr1.2:72466734-72466753 MS.gene97435:CDS 45.0%
CATCCTCAAGGATTGAAACC+CGG + chr1.2:72466664-72466683 None:intergenic 45.0%
CTTCCTACTTCCATGCTACT+TGG + chr1.2:72466740-72466759 None:intergenic 45.0%
GAACATTGTCTGATGCGCAA+AGG - chr1.2:72465601-72465620 MS.gene97435:CDS 45.0%
GCCGTTAACCATTCTCAAGT+TGG - chr1.2:72466548-72466567 MS.gene97435:CDS 45.0%
GGAAGTGGGTCAAAACATGT+AGG - chr1.2:72466755-72466774 MS.gene97435:CDS 45.0%
GGTTCCAACACAACAAGACA+TGG - chr1.2:72466505-72466524 MS.gene97435:CDS 45.0%
GTAGCATGGAAGTAGGAAGT+GGG - chr1.2:72466741-72466760 MS.gene97435:CDS 45.0%
TATTCCGATGCCAAGTAGCA+TGG - chr1.2:72466727-72466746 MS.gene97435:CDS 45.0%
TCAATACCTGCAATACGGCT+GGG + chr1.2:72466166-72466185 None:intergenic 45.0%
TTCAATACCTGCAATACGGC+TGG + chr1.2:72466167-72466186 None:intergenic 45.0%
! ACTTCCATGCTACTTGGCAT+CGG + chr1.2:72466734-72466753 None:intergenic 45.0%
! GCTTAATTGGACCACTGGTT+AGG + chr1.2:72466296-72466315 None:intergenic 45.0%
!! TGATGGGTTGAAAAGTGAGG+CGG - chr1.2:72466808-72466827 MS.gene97435:intron 45.0%
AGGTGGGATGCAAGTAGCTT+AGG - chr1.2:72465714-72465733 MS.gene97435:CDS 50.0%
CTACGTTGTCCCCTTCTTGA+AGG + chr1.2:72465917-72465936 None:intergenic 50.0%
GCTGAAGGTCCTTCAAGAAG+GGG - chr1.2:72465905-72465924 MS.gene97435:intron 50.0%
TAGAGTAGGCGTTAGGACTG+TGG - chr1.2:72465740-72465759 MS.gene97435:CDS 50.0%
TTCCCGGGTTTCAATCCTTG+AGG - chr1.2:72466658-72466677 MS.gene97435:CDS 50.0%
!! GATGGGTTGAAAAGTGAGGC+GGG - chr1.2:72466809-72466828 MS.gene97435:intron 50.0%
TGGTTGCCCAGCCGTATTGC+AGG - chr1.2:72466157-72466176 MS.gene97435:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72465420 72466913 72465420 ID=MS.gene97435
chr1.2 mRNA 72465420 72466913 72465420 ID=MS.gene97435.t1;Parent=MS.gene97435
chr1.2 exon 72466875 72466913 72466875 ID=MS.gene97435.t1.exon1;Parent=MS.gene97435.t1
chr1.2 CDS 72466875 72466913 72466875 ID=cds.MS.gene97435.t1;Parent=MS.gene97435.t1
chr1.2 exon 72466155 72466784 72466155 ID=MS.gene97435.t1.exon2;Parent=MS.gene97435.t1
chr1.2 CDS 72466155 72466784 72466155 ID=cds.MS.gene97435.t1;Parent=MS.gene97435.t1
chr1.2 exon 72465941 72466063 72465941 ID=MS.gene97435.t1.exon3;Parent=MS.gene97435.t1
chr1.2 CDS 72465941 72466063 72465941 ID=cds.MS.gene97435.t1;Parent=MS.gene97435.t1
chr1.2 exon 72465420 72465842 72465420 ID=MS.gene97435.t1.exon4;Parent=MS.gene97435.t1
chr1.2 CDS 72465420 72465842 72465420 ID=cds.MS.gene97435.t1;Parent=MS.gene97435.t1
Gene Sequence

>MS.gene97435

ATGAGGGAAAACAAACGAAAAAGGGAATGTGTTGTTGGTGTAAGTTCAATTTAATTAATGAGATGTTTAATGTGTATGTAATTGTTTGTGTTTTATGGCATTAATGAATGAATACTGTTGAATTTGCAGCCACAGATAAAGACTCAAATGCCCCGTACCAATAAGTTGGTAGATATTAACCGAACATTGTCTGATGCGCAAAGGAGTAGAATTATGACAACTCCGTTCCGATATCTTGTGGATATGAAGACCTATATAGGAATGAATGGTACTTTATTGAAGGAATTATTGCATAGGTGGGATGCAAGTAGCTTAGGATTTAGAGTAGGCGTTAGGACTGTGGCCTTTAAACATCTAGACCTTTGTTTGGCTTTAGGTTTGCCTATTGTAGGAGAGTGTTTACCGGAAACTAGTGATAGGGTTAGTCATGTTAGAACATTGTTTGATGTGAATGAAGTTATTGATATTGATAGTGTACATTCTAAGCTGAAGGTCCTTCAAGAAGGGGACAACGTAGATGATTTTTGTAGAGTTTACATCTTATTTGCCTTGTGTGTGTTATATTTTCCGAAATCACACAGTTATATTAAAAAAGATTTCTTTAAGCTTGTTGATGATTTAGACGCTCTTAGTACCTATAATTGGGGTGTTGCTGTTTACGAAGATTTAATTGAAAATCTTAGTAGTGCGGCATCAAGATACCATCAACAAAAGAATGATACAGTTATACACATTTCTGGTTGCCCAGCCGTATTGCAGGTATTGAATATTAAATGGGTTATGTTTTTTTAATTATATCTATAGTTATGTCAAATGTTGTGTACGTTAATTTTATTTGTCATTTGATTAGATATGGGCGGTTGAACATTTATCCCTAACCAGTGGTCCAATTAAGCGTTTTCCACGCATTAACAATTGGACCAAAGTGGATGGAGGTCATGTTGTAATCGCAAACCTTTTTTCAAATGCGAAGGTTAGTAATTGCCTTTAGTATATTAACTCGGTAAATGGGTTTTATAGTTTAAATTTTCGCATACAATTATGTTAATTTAACCTATTTAATGTGATTAGTTGGTTGAGGACTTGGTTCCAACACAACAAGACATGGAAAATGATGTCTTTGTTGAAGCCGTTAACCATTCTCAAGTTGGTATTGGAGATAGTGCATGCCCTTTTTTTGATGTGCAAGCTTATATGGCTGAACATCAAAGGTTGGTAGCTGAACACAAAGATTTGCTTTCCCGGGTTTCAATCCTTGAGGATGATATGAGGATATTAAAAGCAAATAAGGTTGACGGTAGGGAAAATATTCCGATGCCAAGTAGCATGGAAGTAGGAAGTGGGTCAAAACATGTAGGAGTAAAGTGTAGTAAGATTGATGCGGATAATGATGGGTTGAAAAGTGAGGCGGGAAAAGCAGAAGAAAATGATGGGATGAAGTTGGATGATGAAGATGTTGGTGAAGAGGAAAAAAAAATTGGAAGAAGAAAATGA
Protein sequence

>MS.gene97435.t1

MRENKRKRECVVGPQIKTQMPRTNKLVDINRTLSDAQRSRIMTTPFRYLVDMKTYIGMNGTLLKELLHRWDASSLGFRVGVRTVAFKHLDLCLALGLPIVGECLPETSDRVSHVRTLFDVNEVIDIDSVHSKLKVLQEGDNVDDFCRVYILFALCVLYFPKSHSYIKKDFFKLVDDLDALSTYNWGVAVYEDLIENLSSAASRYHQQKNDTVIHISGCPAVLQIWAVEHLSLTSGPIKRFPRINNWTKVDGGHVVIANLFSNAKLVEDLVPTQQDMENDVFVEAVNHSQVGIGDSACPFFDVQAYMAEHQRLVAEHKDLLSRVSILEDDMRILKANKVDGRENIPMPSSMEVGSGSKHVGVKCSKIDADNDGLKSEAGKAEENDGMKLDDEDVGEEEKKIGRRK