Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97453.t1 | XP_013463972.1 | 81.4 | 43 | 8 | 0 | 3 | 45 | 465 | 507 | 2.90E-09 | 72 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97453.t1 | A0A072V859 | 81.4 | 43 | 8 | 0 | 3 | 45 | 465 | 507 | 2.1e-09 | 72.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057026 | MS.gene97453 | 0.802424 | 5.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97453.t1 | MTR_2g055850 | 68.519 | 54 | 12 | 1 | 2 | 50 | 464 | 517 | 4.51e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAGCACTTTAACGTTCT+TGG | 0.224860 | 7.4:+93342642 | MS.gene97453:CDS |
| GATCCAAGGTTTAATTTCTT+TGG | 0.260286 | 7.4:+93342664 | MS.gene97453:CDS |
| GCAGGATCTTCATAATGTTC+TGG | 0.360030 | 7.4:+93341398 | MS.gene97453:intron |
| AGCTTATAGGTCATATATAT+TGG | 0.360206 | 7.4:+93340985 | MS.gene97453:CDS |
| CTATCACTAAAGAAGCTTAT+AGG | 0.372018 | 7.4:+93340972 | MS.gene97453:CDS |
| ATGCAGCTATGCAGCTATAA+AGG | 0.372160 | 7.4:+93342398 | MS.gene97453:CDS |
| GATACACTACATGAAGTCTT+TGG | 0.416988 | 7.4:-93342299 | None:intergenic |
| TGCAAAAGTACAATCTCAAC+TGG | 0.462720 | 7.4:+93340823 | MS.gene97453:CDS |
| TGTTCGTGTGTAGGTGATTG+TGG | 0.472044 | 7.4:+93341561 | MS.gene97453:intron |
| TTGATTACTTCAGGTCCATC+AGG | 0.474703 | 7.4:+93342345 | MS.gene97453:intron |
| TGACTCTACGGGTGTGGCAT+CGG | 0.481050 | 7.4:-93341218 | None:intergenic |
| CATCAGGTGATACAAAATCA+TGG | 0.499589 | 7.4:+93342361 | MS.gene97453:CDS |
| CTTTAACGTTCTTGGATCCA+AGG | 0.514801 | 7.4:+93342650 | MS.gene97453:CDS |
| TAGGTGATTGTGGAGAAAGC+TGG | 0.522636 | 7.4:+93341571 | MS.gene97453:intron |
| AGTGTTCAGATGATAAGTAC+TGG | 0.542015 | 7.4:-93340951 | None:intergenic |
| TAGGTCTTGCATAAGTGTGA+TGG | 0.565239 | 7.4:+93341159 | MS.gene97453:intron |
| GGTGATACAAAATCATGGGC+AGG | 0.567566 | 7.4:+93342366 | MS.gene97453:CDS |
| AAAGAAGCAATAGTTCTGAA+AGG | 0.576335 | 7.4:+93343222 | MS.gene97453:CDS |
| CTACCAAAGAAATTAAACCT+TGG | 0.579681 | 7.4:-93342667 | None:intergenic |
| ATCAGGTGATACAAAATCAT+GGG | 0.582342 | 7.4:+93342362 | MS.gene97453:CDS |
| TGGCATCGGAAAATAGCTGA+TGG | 0.592929 | 7.4:-93341204 | None:intergenic |
| AAAATAGCTGATGGAGTGAT+CGG | 0.594318 | 7.4:-93341195 | None:intergenic |
| GTTCTGAAAGGAGTTATGAG+TGG | 0.623492 | 7.4:+93343234 | MS.gene97453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACACAAATATAAATTTA+TGG | - | chr7.4:93342981-93343000 | None:intergenic | 10.0% |
| !! | TAACACAAATATAAATTTAT+GGG | - | chr7.4:93342980-93342999 | None:intergenic | 10.0% |
| !!! | GTTTGTTTATTTTAATTTTA+AGG | - | chr7.4:93343602-93343621 | None:intergenic | 10.0% |
| !!! | TATTTTGTTTTAAAACTTTT+TGG | + | chr7.4:93343737-93343756 | MS.gene97453:intron | 10.0% |
| !!! | TTTATTTATTTTAAAAGTTG+AGG | - | chr7.4:93342156-93342175 | None:intergenic | 10.0% |
| !! | AAATGATAGAAAATGAATAA+AGG | + | chr7.4:93343342-93343361 | MS.gene97453:intron | 15.0% |
| !! | AACAAACTTAAAGATAAATA+AGG | + | chr7.4:93343615-93343634 | MS.gene97453:intron | 15.0% |
| !! | ACAAACTTAAAGATAAATAA+GGG | + | chr7.4:93343616-93343635 | MS.gene97453:intron | 15.0% |
| !! | TAAAAATAACTAAAACAAAC+AGG | - | chr7.4:93341640-93341659 | None:intergenic | 15.0% |
| !! | TATAATCATTGTATTGAAAA+TGG | - | chr7.4:93343408-93343427 | None:intergenic | 15.0% |
| !!! | AAGGTTTTTTTTGTTTAATT+TGG | - | chr7.4:93343583-93343602 | None:intergenic | 15.0% |
| !!! | ATATAACTATTTTACTCATT+TGG | + | chr7.4:93343818-93343837 | MS.gene97453:intron | 15.0% |
| !!! | GTTTGTTTTAGTTATTTTTA+AGG | + | chr7.4:93341640-93341659 | MS.gene97453:intron | 15.0% |
| !!! | TATAACTATTTTACTCATTT+GGG | + | chr7.4:93343819-93343838 | MS.gene97453:intron | 15.0% |
| !! | AAAGAAAATATTGAAGAGTT+TGG | - | chr7.4:93343460-93343479 | None:intergenic | 20.0% |
| !! | ACAAAAACATATTATTGTCA+AGG | - | chr7.4:93343157-93343176 | None:intergenic | 20.0% |
| !! | CAAATTCACAAATTTCAATT+GGG | - | chr7.4:93341937-93341956 | None:intergenic | 20.0% |
| !! | CTATAATTTCAAGAATTATG+TGG | - | chr7.4:93341909-93341928 | None:intergenic | 20.0% |
| !! | GAAAAAAATATTTGTAGACA+AGG | - | chr7.4:93343026-93343045 | None:intergenic | 20.0% |
| !! | GTATTACTATTAGATAGAAA+AGG | - | chr7.4:93343285-93343304 | None:intergenic | 20.0% |
| !! | TCAAATTCACAAATTTCAAT+TGG | - | chr7.4:93341938-93341957 | None:intergenic | 20.0% |
| !! | TTTATCAGTAAAACCATTAA+GGG | - | chr7.4:93342480-93342499 | None:intergenic | 20.0% |
| !!! | AAATTTCGTGTTTTATTACT+CGG | + | chr7.4:93341827-93341846 | MS.gene97453:intron | 20.0% |
| !!! | ATTGTTTGTTACATTAATTG+TGG | + | chr7.4:93341734-93341753 | MS.gene97453:intron | 20.0% |
| !!! | TCATTTTCTATCATTTTAGA+AGG | - | chr7.4:93343338-93343357 | None:intergenic | 20.0% |
| !!! | TCTTTTTCAATAAATGTTCA+GGG | + | chr7.4:93342619-93342638 | MS.gene97453:intron | 20.0% |
| ! | AAAACAGTACGTCATAATTA+AGG | - | chr7.4:93342848-93342867 | None:intergenic | 25.0% |
| ! | AAACATATTATTGTCAAGGA+TGG | - | chr7.4:93343153-93343172 | None:intergenic | 25.0% |
| ! | AACATATTATTGTCAAGGAT+GGG | - | chr7.4:93343152-93343171 | None:intergenic | 25.0% |
| ! | AATATGTCTAAAGAATGCAT+AGG | + | chr7.4:93343374-93343393 | MS.gene97453:intron | 25.0% |
| ! | AGCTTATAGGTCATATATAT+TGG | + | chr7.4:93340985-93341004 | MS.gene97453:CDS | 25.0% |
| ! | AGGAAAATCATATGAAGTTA+TGG | - | chr7.4:93341117-93341136 | None:intergenic | 25.0% |
| ! | ATACATACATGATTTACAAC+AGG | - | chr7.4:93343048-93343067 | None:intergenic | 25.0% |
| ! | ATATAATGCAAAATCTGTGA+AGG | + | chr7.4:93341009-93341028 | MS.gene97453:intron | 25.0% |
| ! | ATATGTCTAAAGAATGCATA+GGG | + | chr7.4:93343375-93343394 | MS.gene97453:intron | 25.0% |
| ! | ATCAAAATCCTGTTCATAAT+AGG | + | chr7.4:93343489-93343508 | MS.gene97453:intron | 25.0% |
| ! | ATCTTAAAAGAGAGAAAAAG+AGG | - | chr7.4:93343307-93343326 | None:intergenic | 25.0% |
| ! | ATTATACATTAAGCTTGATG+AGG | - | chr7.4:93342806-93342825 | None:intergenic | 25.0% |
| ! | CATTGAAATGAAATAGAATG+TGG | + | chr7.4:93342038-93342057 | MS.gene97453:intron | 25.0% |
| ! | GAAAATTTCCTATATCTTCT+TGG | + | chr7.4:93341512-93341531 | MS.gene97453:intron | 25.0% |
| ! | GAAGTTATACCTATAATTGA+AGG | - | chr7.4:93341054-93341073 | None:intergenic | 25.0% |
| ! | GGAAAATCATATGAAGTTAT+GGG | - | chr7.4:93341116-93341135 | None:intergenic | 25.0% |
| ! | GTTTATCAGTAAAACCATTA+AGG | - | chr7.4:93342481-93342500 | None:intergenic | 25.0% |
| ! | TAAATATATTGTTCGTGTGT+AGG | + | chr7.4:93341552-93341571 | MS.gene97453:intron | 25.0% |
| ! | TAAATCGAGCACATAAAATA+AGG | - | chr7.4:93342579-93342598 | None:intergenic | 25.0% |
| ! | TATAATGCAAAATCTGTGAA+GGG | + | chr7.4:93341010-93341029 | MS.gene97453:intron | 25.0% |
| ! | TGGATATCAAAACTGATAAT+TGG | - | chr7.4:93341453-93341472 | None:intergenic | 25.0% |
| ! | TTATACATTAAGCTTGATGA+GGG | - | chr7.4:93342805-93342824 | None:intergenic | 25.0% |
| ! | TTTCATCATTAACAATGCAT+CGG | + | chr7.4:93342728-93342747 | MS.gene97453:intron | 25.0% |
| !! | AATAGAATGTGGAAATTTTG+AGG | + | chr7.4:93342049-93342068 | MS.gene97453:intron | 25.0% |
| !! | ATATTGAAGAGTTTGGATTT+TGG | - | chr7.4:93343453-93343472 | None:intergenic | 25.0% |
| !! | ATCAGGTAACATAATCTTTT+CGG | - | chr7.4:93341667-93341686 | None:intergenic | 25.0% |
| !! | ATTTTGTGAGTATTTGATTG+TGG | - | chr7.4:93342697-93342716 | None:intergenic | 25.0% |
| !! | GTTTGTTTATTTGTTAGCAA+TGG | + | chr7.4:93343175-93343194 | MS.gene97453:intron | 25.0% |
| !! | TTCTTTTTAGATGACTAATC+TGG | + | chr7.4:93341871-93341890 | MS.gene97453:intron | 25.0% |
| !!! | AAAAAATTGATTGCCACTTT+AGG | - | chr7.4:93340862-93340881 | None:intergenic | 25.0% |
| !!! | GTCTTTTTCAATAAATGTTC+AGG | + | chr7.4:93342618-93342637 | MS.gene97453:intron | 25.0% |
| !!! | GTTGATAGTTTCAATGAAAA+TGG | + | chr7.4:93341281-93341300 | MS.gene97453:intron | 25.0% |
| !!! | TAATTTTGCTTTTTAGCTCA+TGG | + | chr7.4:93343070-93343089 | MS.gene97453:intron | 25.0% |
| !!! | TATGAATCACTGATTTGTTA+TGG | + | chr7.4:93341997-93342016 | MS.gene97453:intron | 25.0% |
| !!! | TCTATCATTTTAGAAGGATT+TGG | - | chr7.4:93343332-93343351 | None:intergenic | 25.0% |
| !!! | TGTTACCTGATTTTTTTATG+TGG | + | chr7.4:93341676-93341695 | MS.gene97453:intron | 25.0% |
| AAGGACCACATAAAAAAATC+AGG | - | chr7.4:93341684-93341703 | None:intergenic | 30.0% | |
| AATTGAGCAATTACTGTAGT+TGG | + | chr7.4:93341479-93341498 | MS.gene97453:intron | 30.0% | |
| ATCAGGTGATACAAAATCAT+GGG | + | chr7.4:93342362-93342381 | MS.gene97453:CDS | 30.0% | |
| ATGCAATGAACAAACCAAAT+GGG | - | chr7.4:93343675-93343694 | None:intergenic | 30.0% | |
| ATTGAGCAATTACTGTAGTT+GGG | + | chr7.4:93341480-93341499 | MS.gene97453:intron | 30.0% | |
| CTACCAAAGAAATTAAACCT+TGG | - | chr7.4:93342670-93342689 | None:intergenic | 30.0% | |
| CTATCACTAAAGAAGCTTAT+AGG | + | chr7.4:93340972-93340991 | MS.gene97453:CDS | 30.0% | |
| CTTAAGACAACATGATTTCT+GGG | + | chr7.4:93341355-93341374 | MS.gene97453:intron | 30.0% | |
| CTTGTACTTTGTACAATTGA+AGG | + | chr7.4:93342276-93342295 | MS.gene97453:intron | 30.0% | |
| GAAACAATCCTATTATGAAC+AGG | - | chr7.4:93343500-93343519 | None:intergenic | 30.0% | |
| GCATATAACCAAGAAGATAT+AGG | - | chr7.4:93341523-93341542 | None:intergenic | 30.0% | |
| GTAATTGCTCAATTGTTTAG+TGG | - | chr7.4:93341473-93341492 | None:intergenic | 30.0% | |
| GTTATATTCAGAGACAAGTT+TGG | - | chr7.4:93343792-93343811 | None:intergenic | 30.0% | |
| GTTTCTCATGTCTATAAACT+TGG | - | chr7.4:93343431-93343450 | None:intergenic | 30.0% | |
| TATACATTAAGCTTGATGAG+GGG | - | chr7.4:93342804-93342823 | None:intergenic | 30.0% | |
| TATGCAATGAACAAACCAAA+TGG | - | chr7.4:93343676-93343695 | None:intergenic | 30.0% | |
| TGGCTCAAATTGTGTATAAA+GGG | + | chr7.4:93343108-93343127 | MS.gene97453:intron | 30.0% | |
| TTATCTCTAACGATATCATC+TGG | + | chr7.4:93340906-93340925 | MS.gene97453:intron | 30.0% | |
| TTCAAAACCTTGATTACTTC+AGG | + | chr7.4:93342336-93342355 | MS.gene97453:intron | 30.0% | |
| TTCATTGAAACTATCAACTG+AGG | - | chr7.4:93341279-93341298 | None:intergenic | 30.0% | |
| TTCTACTGAAAAAATGCATC+AGG | + | chr7.4:93342422-93342441 | MS.gene97453:CDS | 30.0% | |
| TTCTGCAAGGTTATATTGTT+TGG | - | chr7.4:93341794-93341813 | None:intergenic | 30.0% | |
| TTGAATCATTATTGCCCATT+TGG | + | chr7.4:93343658-93343677 | MS.gene97453:intron | 30.0% | |
| TTTGGATGTTCTTAAATCTG+TGG | - | chr7.4:93343565-93343584 | None:intergenic | 30.0% | |
| ! | AAAGTTGGTTGTAAGTTATG+TGG | + | chr7.4:93341242-93341261 | MS.gene97453:intron | 30.0% |
| ! | CATATGATTTTCCTGTTGAT+AGG | + | chr7.4:93341123-93341142 | MS.gene97453:intron | 30.0% |
| ! | GATCCAAGGTTTAATTTCTT+TGG | + | chr7.4:93342664-93342683 | MS.gene97453:CDS | 30.0% |
| ! | TCAGGTAACATAATCTTTTC+GGG | - | chr7.4:93341666-93341685 | None:intergenic | 30.0% |
| ! | TGATGCTTTTGTGAAGATTT+TGG | + | chr7.4:93341703-93341722 | MS.gene97453:intron | 30.0% |
| !! | AAAGAAGCAATAGTTCTGAA+AGG | + | chr7.4:93343222-93343241 | MS.gene97453:CDS | 30.0% |
| !! | AAATCTTCACAAAAGCATCA+AGG | - | chr7.4:93341703-93341722 | None:intergenic | 30.0% |
| !! | ATCTTACCCACTTTTATTTC+AGG | + | chr7.4:93343695-93343714 | MS.gene97453:intron | 30.0% |
| !! | TCTTACCCACTTTTATTTCA+GGG | + | chr7.4:93343696-93343715 | MS.gene97453:intron | 30.0% |
| AAAATAGCTGATGGAGTGAT+CGG | - | chr7.4:93341198-93341217 | None:intergenic | 35.0% | |
| AAAATTGCAATAGCACAGAG+CGG | - | chr7.4:93341082-93341101 | None:intergenic | 35.0% | |
| ACTGCATTCCATACTACATT+GGG | - | chr7.4:93341311-93341330 | None:intergenic | 35.0% | |
| AGTGTTCAGATGATAAGTAC+TGG | - | chr7.4:93340954-93340973 | None:intergenic | 35.0% | |
| ATGTAGTATGGAATGCAGTA+TGG | + | chr7.4:93341312-93341331 | MS.gene97453:intron | 35.0% | |
| CATCAGGTGATACAAAATCA+TGG | + | chr7.4:93342361-93342380 | MS.gene97453:CDS | 35.0% | |
| CCAGAAATCATGTTGTCTTA+AGG | - | chr7.4:93341357-93341376 | None:intergenic | 35.0% | |
| CCTTAAGACAACATGATTTC+TGG | + | chr7.4:93341354-93341373 | MS.gene97453:intron | 35.0% | |
| CTTCATAATGTTCTGGTAAG+TGG | + | chr7.4:93341405-93341424 | MS.gene97453:intron | 35.0% | |
| GATACACTACATGAAGTCTT+TGG | - | chr7.4:93342302-93342321 | None:intergenic | 35.0% | |
| GATTGTGCCAATGAAATTGT+CGG | - | chr7.4:93342535-93342554 | None:intergenic | 35.0% | |
| GCAAATACCGACAATTTCAT+TGG | + | chr7.4:93342525-93342544 | MS.gene97453:intron | 35.0% | |
| GTGGCTCAAATTGTGTATAA+AGG | + | chr7.4:93343107-93343126 | MS.gene97453:intron | 35.0% | |
| TACTGCATTCCATACTACAT+TGG | - | chr7.4:93341312-93341331 | None:intergenic | 35.0% | |
| TAGCTACCCAAAATCAAAAC+TGG | - | chr7.4:93343203-93343222 | None:intergenic | 35.0% | |
| TATATTCCTCCTTCCTAAAG+TGG | + | chr7.4:93340846-93340865 | MS.gene97453:intron | 35.0% | |
| TCAGTAAAACCATTAAGGGT+AGG | - | chr7.4:93342476-93342495 | None:intergenic | 35.0% | |
| TGACATTGCTAAGAAGTAAG+TGG | + | chr7.4:93341600-93341619 | MS.gene97453:intron | 35.0% | |
| ! | AAGTTGAGGAGTTACTTTAC+AGG | - | chr7.4:93342142-93342161 | None:intergenic | 35.0% |
| ! | AGTTGAGGAGTTACTTTACA+GGG | - | chr7.4:93342141-93342160 | None:intergenic | 35.0% |
| ! | CATGATTTTGTATCACCTGA+TGG | - | chr7.4:93342363-93342382 | None:intergenic | 35.0% |
| ! | GATAGGTTTGGTTGTTCAAT+AGG | + | chr7.4:93341140-93341159 | MS.gene97453:intron | 35.0% |
| ! | GCTTTTGTGAAGATTTTGGA+AGG | + | chr7.4:93341707-93341726 | MS.gene97453:intron | 35.0% |
| ! | GTCTAAAGTGCAGAATCTAA+GGG | - | chr7.4:93342913-93342932 | None:intergenic | 35.0% |
| ! | TGCAAAAGTACAATCTCAAC+TGG | + | chr7.4:93340823-93340842 | MS.gene97453:CDS | 35.0% |
| ! | TGTCTAAAGTGCAGAATCTA+AGG | - | chr7.4:93342914-93342933 | None:intergenic | 35.0% |
| !! | AACCAACTTTTTGACTCTAC+GGG | - | chr7.4:93341232-93341251 | None:intergenic | 35.0% |
| !! | AATTGATTGCCACTTTAGGA+AGG | - | chr7.4:93340858-93340877 | None:intergenic | 35.0% |
| !! | CAACCAACTTTTTGACTCTA+CGG | - | chr7.4:93341233-93341252 | None:intergenic | 35.0% |
| !! | CTCATTTGGGACATTTTTGT+AGG | + | chr7.4:93343832-93343851 | MS.gene97453:intron | 35.0% |
| !! | CTTACCCACTTTTATTTCAG+GGG | + | chr7.4:93343697-93343716 | MS.gene97453:intron | 35.0% |
| !! | GATTTTCCTGTTGATAGGTT+TGG | + | chr7.4:93341128-93341147 | MS.gene97453:intron | 35.0% |
| !! | TTACCCACTTTTATTTCAGG+GGG | + | chr7.4:93343698-93343717 | MS.gene97453:intron | 35.0% |
| !!! | AATGGAGCCAGTTTTGATTT+TGG | + | chr7.4:93343193-93343212 | MS.gene97453:intron | 35.0% |
| !!! | ATGGAGCCAGTTTTGATTTT+GGG | + | chr7.4:93343194-93343213 | MS.gene97453:intron | 35.0% |
| AAATTGCAATAGCACAGAGC+GGG | - | chr7.4:93341081-93341100 | None:intergenic | 40.0% | |
| AGGATTGTTTCCACACAGTT+TGG | + | chr7.4:93343509-93343528 | MS.gene97453:intron | 40.0% | |
| AGTAATGATGCCAAACTGTG+TGG | - | chr7.4:93343522-93343541 | None:intergenic | 40.0% | |
| ATGCAGCTATGCAGCTATAA+AGG | + | chr7.4:93342398-93342417 | MS.gene97453:CDS | 40.0% | |
| ATGGAAACCCCAATGTAGTA+TGG | + | chr7.4:93341300-93341319 | MS.gene97453:intron | 40.0% | |
| CATGAGCACTTTAACGTTCT+TGG | + | chr7.4:93342642-93342661 | MS.gene97453:CDS | 40.0% | |
| CATTAATTGTGGTGTACAGC+TGG | + | chr7.4:93341745-93341764 | MS.gene97453:intron | 40.0% | |
| CTAAATGCTCCTACCCTTAA+TGG | + | chr7.4:93342464-93342483 | MS.gene97453:intron | 40.0% | |
| CTGCATTCCATACTACATTG+GGG | - | chr7.4:93341310-93341329 | None:intergenic | 40.0% | |
| CTTTAACGTTCTTGGATCCA+AGG | + | chr7.4:93342650-93342669 | MS.gene97453:CDS | 40.0% | |
| GAACAACCAAACCTATCAAC+AGG | - | chr7.4:93341137-93341156 | None:intergenic | 40.0% | |
| GCAGGATCTTCATAATGTTC+TGG | + | chr7.4:93341398-93341417 | MS.gene97453:intron | 40.0% | |
| TAGGTCTTGCATAAGTGTGA+TGG | + | chr7.4:93341159-93341178 | MS.gene97453:intron | 40.0% | |
| TGCTCACTGCCTTCAATTAT+AGG | + | chr7.4:93341042-93341061 | MS.gene97453:intron | 40.0% | |
| TTGATTACTTCAGGTCCATC+AGG | + | chr7.4:93342345-93342364 | MS.gene97453:intron | 40.0% | |
| ! | AGGAGTTACTTTACAGGGTT+TGG | - | chr7.4:93342136-93342155 | None:intergenic | 40.0% |
| ! | CGATATCATCTGGATTTTGC+AGG | + | chr7.4:93340916-93340935 | MS.gene97453:intron | 40.0% |
| ! | TCATCGAAGTTTGTTCTGCA+AGG | - | chr7.4:93341807-93341826 | None:intergenic | 40.0% |
| ! | TGATGGACCTGAAGTAATCA+AGG | - | chr7.4:93342346-93342365 | None:intergenic | 40.0% |
| !! | GTTCTGAAAGGAGTTATGAG+TGG | + | chr7.4:93343234-93343253 | MS.gene97453:CDS | 40.0% |
| !! | TAAGGGTAGGAGCATTTAGT+TGG | - | chr7.4:93342463-93342482 | None:intergenic | 40.0% |
| !! | TACCCACTTTTATTTCAGGG+GGG | + | chr7.4:93343699-93343718 | MS.gene97453:intron | 40.0% |
| AGATCCTGCAGAAGAACAAG+AGG | - | chr7.4:93341387-93341406 | None:intergenic | 45.0% | |
| CACCCGTAGAGTCAAAAAGT+TGG | + | chr7.4:93341227-93341246 | MS.gene97453:CDS | 45.0% | |
| CATGGTGCGAGAAAGTAAAG+TGG | + | chr7.4:93343088-93343107 | MS.gene97453:intron | 45.0% | |
| CTTGATGAGGGGTAGCTAAT+CGG | - | chr7.4:93342793-93342812 | None:intergenic | 45.0% | |
| GACCCCCCTGAAATAAAAGT+GGG | - | chr7.4:93343704-93343723 | None:intergenic | 45.0% | |
| GATACCTCTTGTTCTTCTGC+AGG | + | chr7.4:93341380-93341399 | MS.gene97453:intron | 45.0% | |
| GGTGATACAAAATCATGGGC+AGG | + | chr7.4:93342366-93342385 | MS.gene97453:CDS | 45.0% | |
| GTATGGAATGCAGTATGGAG+AGG | + | chr7.4:93341317-93341336 | MS.gene97453:intron | 45.0% | |
| GTGCAGAATCTAAGGGTGAT+AGG | - | chr7.4:93342906-93342925 | None:intergenic | 45.0% | |
| TAGGTGATTGTGGAGAAAGC+TGG | + | chr7.4:93341571-93341590 | MS.gene97453:intron | 45.0% | |
| TGACCCCCCTGAAATAAAAG+TGG | - | chr7.4:93343705-93343724 | None:intergenic | 45.0% | |
| TGTTCGTGTGTAGGTGATTG+TGG | + | chr7.4:93341561-93341580 | MS.gene97453:intron | 45.0% | |
| TTGATGAGGGGTAGCTAATC+GGG | - | chr7.4:93342792-93342811 | None:intergenic | 45.0% | |
| ! | CTGGATTTTGCAGGAGAAGA+TGG | + | chr7.4:93340925-93340944 | MS.gene97453:intron | 45.0% |
| ! | GATTTTGCAGGAGAAGATGG+TGG | + | chr7.4:93340928-93340947 | MS.gene97453:intron | 45.0% |
| ! | TGGCATCGGAAAATAGCTGA+TGG | - | chr7.4:93341207-93341226 | None:intergenic | 45.0% |
| !! | ACTTTTTGACTCTACGGGTG+TGG | - | chr7.4:93341227-93341246 | None:intergenic | 45.0% |
| !! | TGATTGCCACTTTAGGAAGG+AGG | - | chr7.4:93340855-93340874 | None:intergenic | 45.0% |
| GTATGGAGAGGCAGTGAAGA+TGG | + | chr7.4:93341329-93341348 | MS.gene97453:intron | 50.0% | |
| TGATGAGGGGTAGCTAATCG+GGG | - | chr7.4:93342791-93342810 | None:intergenic | 50.0% | |
| TGACTCTACGGGTGTGGCAT+CGG | - | chr7.4:93341221-93341240 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93340800 | 93343865 | 93340800 | ID=MS.gene97453 |
| chr7.4 | mRNA | 93340800 | 93343865 | 93340800 | ID=MS.gene97453.t1;Parent=MS.gene97453 |
| chr7.4 | exon | 93340800 | 93340844 | 93340800 | ID=MS.gene97453.t1.exon1;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93340800 | 93340844 | 93340800 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93340938 | 93341024 | 93340938 | ID=MS.gene97453.t1.exon2;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93340938 | 93341024 | 93340938 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93341162 | 93341251 | 93341162 | ID=MS.gene97453.t1.exon3;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93341162 | 93341251 | 93341162 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93341402 | 93341419 | 93341402 | ID=MS.gene97453.t1.exon4;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93341402 | 93341419 | 93341402 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93341574 | 93341614 | 93341574 | ID=MS.gene97453.t1.exon5;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93341574 | 93341614 | 93341574 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93342298 | 93342311 | 93342298 | ID=MS.gene97453.t1.exon6;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93342298 | 93342311 | 93342298 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93342358 | 93342443 | 93342358 | ID=MS.gene97453.t1.exon7;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93342358 | 93342443 | 93342358 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93342640 | 93342685 | 93342640 | ID=MS.gene97453.t1.exon8;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93342640 | 93342685 | 93342640 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93343220 | 93343272 | 93343220 | ID=MS.gene97453.t1.exon9;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93343220 | 93343272 | 93343220 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| chr7.4 | exon | 93343854 | 93343865 | 93343854 | ID=MS.gene97453.t1.exon10;Parent=MS.gene97453.t1 |
| chr7.4 | CDS | 93343854 | 93343865 | 93343854 | ID=cds.MS.gene97453.t1;Parent=MS.gene97453.t1 |
| Gene Sequence |
| Protein sequence |
