Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97654.t1 | XP_003606125.1 | 96.6 | 296 | 8 | 1 | 1 | 294 | 1 | 296 | 1.40E-136 | 495.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97654.t1 | Q8LEJ6 | 48.3 | 174 | 85 | 2 | 68 | 236 | 29 | 202 | 2.9e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97654.t1 | G7JIF3 | 96.6 | 296 | 8 | 1 | 1 | 294 | 1 | 296 | 1.0e-136 | 495.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene97654 | 0.919038 | 7.41E-87 | -1.69E-46 |
| MS.gene058848 | MS.gene97654 | 0.838558 | 2.68E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97654.t1 | MTR_4g053380 | 96.959 | 296 | 7 | 1 | 1 | 294 | 1 | 296 | 0.0 | 565 |
| MS.gene97654.t1 | MTR_4g059840 | 81.911 | 293 | 45 | 5 | 2 | 292 | 1 | 287 | 7.73e-147 | 414 |
| MS.gene97654.t1 | MTR_4g059790 | 84.291 | 261 | 36 | 3 | 24 | 282 | 22 | 279 | 2.88e-136 | 387 |
| MS.gene97654.t1 | MTR_2g093970 | 57.966 | 295 | 108 | 8 | 2 | 289 | 1 | 286 | 2.30e-99 | 293 |
| MS.gene97654.t1 | MTR_8g087450 | 59.524 | 210 | 72 | 3 | 24 | 222 | 17 | 224 | 4.53e-78 | 239 |
| MS.gene97654.t1 | MTR_2g017950 | 46.602 | 309 | 124 | 8 | 2 | 289 | 1 | 289 | 1.22e-74 | 231 |
| MS.gene97654.t1 | MTR_2g093980 | 47.586 | 290 | 134 | 7 | 9 | 292 | 5 | 282 | 3.70e-73 | 226 |
| MS.gene97654.t1 | MTR_2g017960 | 56.202 | 258 | 103 | 4 | 8 | 264 | 3 | 251 | 3.94e-72 | 223 |
| MS.gene97654.t1 | MTR_2g017970 | 64.205 | 176 | 55 | 2 | 75 | 249 | 68 | 236 | 2.67e-71 | 221 |
| MS.gene97654.t1 | MTR_8g087460 | 49.799 | 249 | 81 | 8 | 6 | 222 | 6 | 242 | 3.86e-67 | 212 |
| MS.gene97654.t1 | MTR_4g059780 | 55.838 | 197 | 78 | 3 | 32 | 224 | 48 | 239 | 1.60e-66 | 210 |
| MS.gene97654.t1 | MTR_8g087470 | 52.720 | 239 | 89 | 8 | 6 | 222 | 6 | 242 | 1.61e-66 | 210 |
| MS.gene97654.t1 | MTR_4g059720 | 50.442 | 226 | 78 | 6 | 2 | 227 | 1 | 192 | 3.10e-61 | 195 |
| MS.gene97654.t1 | MTR_2g093990 | 57.047 | 149 | 63 | 1 | 75 | 223 | 41 | 188 | 2.09e-52 | 172 |
| MS.gene97654.t1 | MTR_7g101080 | 46.203 | 158 | 83 | 2 | 67 | 223 | 32 | 188 | 1.15e-39 | 139 |
| MS.gene97654.t1 | MTR_2g090765 | 45.513 | 156 | 84 | 1 | 68 | 223 | 31 | 185 | 8.52e-31 | 116 |
| MS.gene97654.t1 | MTR_7g075453 | 33.708 | 178 | 97 | 4 | 68 | 240 | 177 | 338 | 1.86e-16 | 79.3 |
| MS.gene97654.t1 | MTR_5g098060 | 30.804 | 224 | 141 | 6 | 74 | 291 | 47 | 262 | 1.94e-16 | 77.8 |
| MS.gene97654.t1 | MTR_2g437700 | 31.169 | 154 | 99 | 4 | 74 | 223 | 194 | 344 | 3.03e-13 | 70.1 |
| MS.gene97654.t1 | MTR_5g098420 | 30.688 | 189 | 115 | 6 | 42 | 227 | 167 | 342 | 1.94e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97654.t1 | AT5G03170 | 47.340 | 188 | 87 | 4 | 61 | 245 | 25 | 203 | 1.09e-47 | 160 |
| MS.gene97654.t1 | AT5G60490 | 52.667 | 150 | 69 | 2 | 75 | 223 | 39 | 187 | 4.08e-45 | 153 |
| MS.gene97654.t1 | AT2G20520 | 38.991 | 218 | 120 | 6 | 54 | 265 | 19 | 229 | 1.28e-30 | 115 |
| MS.gene97654.t1 | AT5G44130 | 36.585 | 205 | 116 | 6 | 74 | 274 | 35 | 229 | 5.07e-30 | 114 |
| MS.gene97654.t1 | AT1G03870 | 36.111 | 180 | 107 | 3 | 74 | 246 | 38 | 216 | 5.24e-24 | 98.2 |
| MS.gene97654.t1 | AT3G46550 | 31.034 | 174 | 107 | 6 | 72 | 235 | 204 | 374 | 4.15e-15 | 75.5 |
| MS.gene97654.t1 | AT3G60900 | 28.108 | 185 | 121 | 4 | 55 | 239 | 173 | 345 | 2.83e-13 | 70.1 |
| MS.gene97654.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 74 | 223 | 45 | 192 | 2.15e-12 | 66.2 |
| MS.gene97654.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 74 | 223 | 45 | 192 | 2.15e-12 | 66.2 |
Find 81 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCAGTTCCACCTTTC+CGG | 0.138093 | 4.4:+48967943 | None:intergenic |
| GGCTTCTCCTTATCAGCTTT+TGG | 0.173769 | 4.4:+48967731 | None:intergenic |
| GAGCAGCAGCTGGTGATAAT+TGG | 0.244026 | 4.4:+48968374 | None:intergenic |
| AATGAAGGTACCAATGGTTT+AGG | 0.288239 | 4.4:+48968307 | None:intergenic |
| TAAATGACTTTGCCTTTCTT+AGG | 0.291746 | 4.4:+48968224 | None:intergenic |
| TCCGAGGAATCTGGCGATAA+TGG | 0.305230 | 4.4:+48967710 | None:intergenic |
| GATTCCACCCCTGACAGTTC+AGG | 0.323382 | 4.4:-48968268 | MS.gene97654:CDS |
| CCAACTCAATTCACAACTAT+TGG | 0.336498 | 4.4:-48968161 | MS.gene97654:CDS |
| CGTCTTGCTATTTATAAAGT+TGG | 0.340020 | 4.4:-48967842 | MS.gene97654:CDS |
| GTGGTTGGAGCTGGTAATGT+AGG | 0.347673 | 4.4:+48968343 | None:intergenic |
| GGGGCTGCAGCTGGTGTGGT+TGG | 0.356342 | 4.4:+48968328 | None:intergenic |
| ATGAAGGTACCAATGGTTTA+GGG | 0.366320 | 4.4:+48968308 | None:intergenic |
| CAACTATTGGCAACAAAATC+AGG | 0.371289 | 4.4:-48968148 | MS.gene97654:CDS |
| ACCGACGAAGGGACTGTCTT+TGG | 0.372165 | 4.4:-48967777 | MS.gene97654:CDS |
| ACTGTCAGGGGTGGAATCAC+TGG | 0.372455 | 4.4:+48968273 | None:intergenic |
| ACATTCAGTTCCACCTTTCC+GGG | 0.381438 | 4.4:+48967944 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4.4:-48967974 | MS.gene97654:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4.4:-48967822 | MS.gene97654:CDS |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.404159 | 4.4:+48968334 | None:intergenic |
| GTGGAATCACTGGGTGCCTC+TGG | 0.408467 | 4.4:+48968283 | None:intergenic |
| ACAGATGAATCCGAGGAATC+TGG | 0.415550 | 4.4:+48967701 | None:intergenic |
| TCAACGGCCCCTGAACTGTC+AGG | 0.434149 | 4.4:+48968259 | None:intergenic |
| TCAGGGGCCGTTGACATTGT+TGG | 0.437007 | 4.4:-48968250 | MS.gene97654:CDS |
| GGAAGTGTGAACATATCAAC+AGG | 0.440559 | 4.4:-48967908 | MS.gene97654:CDS |
| AGCAGCAGCTGGTGATAATT+GGG | 0.449555 | 4.4:+48968375 | None:intergenic |
| TGTGAGAAGGCGTTGTCATC+CGG | 0.456479 | 4.4:+48968106 | None:intergenic |
| GCCATTATCGCCAGATTCCT+CGG | 0.463299 | 4.4:-48967711 | MS.gene97654:CDS |
| GGAGTCGTTGTTGAAGGCTC+TGG | 0.469840 | 4.4:+48967752 | None:intergenic |
| AGTACCAGAGTTATCATTTG+TGG | 0.474963 | 4.4:+48967673 | None:intergenic |
| AACGACTCCAAAAGCTGATA+AGG | 0.478459 | 4.4:-48967738 | MS.gene97654:CDS |
| GCTGGTAATGTAGGGTGTAT+TGG | 0.481437 | 4.4:+48968352 | None:intergenic |
| ACTGTGAAAATGAATGTGTA+TGG | 0.486591 | 4.4:-48967653 | MS.gene97654:CDS |
| GTACCAGAGTTATCATTTGT+GGG | 0.489167 | 4.4:+48967674 | None:intergenic |
| TTGGGATAAAGTAGTGGTAG+TGG | 0.494733 | 4.4:+48968393 | None:intergenic |
| CATTGTTGGAATCCTAAGAA+AGG | 0.498831 | 4.4:-48968236 | MS.gene97654:CDS |
| CCAATAGTTGTGAATTGAGT+TGG | 0.499317 | 4.4:+48968161 | None:intergenic |
| TGGTTGGAGCTGGTAATGTA+GGG | 0.503825 | 4.4:+48968344 | None:intergenic |
| ATTCCACCCCTGACAGTTCA+GGG | 0.509419 | 4.4:-48968267 | MS.gene97654:CDS |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4.4:+48967971 | None:intergenic |
| AATGGTTTAGGGGCTGCAGC+TGG | 0.522193 | 4.4:+48968319 | None:intergenic |
| CTGGGTGCCTCTGGTAATGA+AGG | 0.525888 | 4.4:+48968292 | None:intergenic |
| TTTAGGGGCTGCAGCTGGTG+TGG | 0.537732 | 4.4:+48968324 | None:intergenic |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.538486 | 4.4:+48967972 | None:intergenic |
| TGGGTTGACAATTCTTGCAC+CGG | 0.540458 | 4.4:-48968125 | MS.gene97654:CDS |
| TTCCTCAACTCACTTTCCGA+TGG | 0.541050 | 4.4:-48968070 | MS.gene97654:CDS |
| AGCTGCAGCCCCTAAACCAT+TGG | 0.546451 | 4.4:-48968317 | MS.gene97654:CDS |
| AAATGAATGTGTATGGAAAG+TGG | 0.552632 | 4.4:-48967646 | MS.gene97654:CDS |
| GCAACAGAAAAGAAATCCAT+AGG | 0.554500 | 4.4:+48967806 | None:intergenic |
| GGGTGTATTGGAGCAGCAGC+TGG | 0.559103 | 4.4:+48968364 | None:intergenic |
| GCCTTCTCACAACTCAAAGC+AGG | 0.566899 | 4.4:-48968094 | MS.gene97654:CDS |
| CTGTCAGGGGTGGAATCACT+GGG | 0.571235 | 4.4:+48968274 | None:intergenic |
| CAGCTCAAGTTTCTGTCCAT+CGG | 0.571872 | 4.4:+48968054 | None:intergenic |
| GAACTGAATGTGATAAGTTA+CGG | 0.572972 | 4.4:-48967932 | MS.gene97654:CDS |
| CAACGGCCCCTGAACTGTCA+GGG | 0.576597 | 4.4:+48968260 | None:intergenic |
| TCCTGCTTTGAGTTGTGAGA+AGG | 0.576789 | 4.4:+48968093 | None:intergenic |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4.4:-48967957 | MS.gene97654:CDS |
| AACGGCCCCTGAACTGTCAG+GGG | 0.587373 | 4.4:+48968261 | None:intergenic |
| AATGAATGTGTATGGAAAGT+GGG | 0.589784 | 4.4:-48967645 | MS.gene97654:CDS |
| TGTTGCTAAGGCACCGACGA+AGG | 0.590444 | 4.4:-48967789 | MS.gene97654:CDS |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4.4:-48967962 | MS.gene97654:CDS |
| GCCAAAGACAGTCCCTTCGT+CGG | 0.593435 | 4.4:+48967776 | None:intergenic |
| GTTGCTAAGGCACCGACGAA+GGG | 0.594871 | 4.4:-48967788 | MS.gene97654:CDS |
| GGCCCCTGAACTGTCAGGGG+TGG | 0.600897 | 4.4:+48968264 | None:intergenic |
| TAGGATTCCAACAATGTCAA+CGG | 0.603540 | 4.4:+48968243 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+TGG | 0.603914 | 4.4:+48968301 | None:intergenic |
| AAGCCCACAAATGATAACTC+TGG | 0.604424 | 4.4:-48967677 | MS.gene97654:CDS |
| AATCACATTCTGATTTATCG+TGG | 0.607000 | 4.4:+48967584 | None:intergenic |
| GTCCATCGGAAAGTGAGTTG+AGG | 0.623528 | 4.4:+48968068 | None:intergenic |
| GAAGTGAACACAACGATCGA+TGG | 0.624371 | 4.4:-48967884 | MS.gene97654:CDS |
| TTCCACCCCTGACAGTTCAG+GGG | 0.629543 | 4.4:-48968266 | MS.gene97654:CDS |
| ATACGTAATCTGAAATAACA+TGG | 0.631817 | 4.4:+48968023 | None:intergenic |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4.4:-48967954 | MS.gene97654:CDS |
| TGAAGGTACCAATGGTTTAG+GGG | 0.640788 | 4.4:+48968309 | None:intergenic |
| CTATTGGCAACAAAATCAGG+TGG | 0.642175 | 4.4:-48968145 | MS.gene97654:CDS |
| TGATAATTGGGATAAAGTAG+TGG | 0.645556 | 4.4:+48968387 | None:intergenic |
| ATTGGTACCTTCATTACCAG+AGG | 0.661510 | 4.4:-48968299 | MS.gene97654:CDS |
| TATTGGCAACAAAATCAGGT+GGG | 0.667970 | 4.4:-48968144 | MS.gene97654:CDS |
| CTGAATGTGATAAGTTACGG+TGG | 0.671159 | 4.4:-48967929 | MS.gene97654:CDS |
| GGGCTTAACAGATGAATCCG+AGG | 0.698996 | 4.4:+48967694 | None:intergenic |
| GAAGTGTGAACATATCAACA+GGG | 0.726270 | 4.4:-48967907 | MS.gene97654:CDS |
| AAGTGTGAACATATCAACAG+GGG | 0.748931 | 4.4:-48967906 | MS.gene97654:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACGTAATCTGAAATAACA+TGG | + | chr4.4:48968038-48968057 | None:intergenic | 25.0% |
| AAATGAATGTGTATGGAAAG+TGG | - | chr4.4:48968412-48968431 | MS.gene97654:CDS | 30.0% | |
| AATGAATGTGTATGGAAAGT+GGG | - | chr4.4:48968413-48968432 | MS.gene97654:CDS | 30.0% | |
| ACTGTGAAAATGAATGTGTA+TGG | - | chr4.4:48968405-48968424 | MS.gene97654:CDS | 30.0% | |
| GAACTGAATGTGATAAGTTA+CGG | - | chr4.4:48968126-48968145 | MS.gene97654:CDS | 30.0% | |
| TAAATGACTTTGCCTTTCTT+AGG | + | chr4.4:48967837-48967856 | None:intergenic | 30.0% | |
| TGATAATTGGGATAAAGTAG+TGG | + | chr4.4:48967674-48967693 | None:intergenic | 30.0% | |
| !! | CGTCTTGCTATTTATAAAGT+TGG | - | chr4.4:48968216-48968235 | MS.gene97654:CDS | 30.0% |
| !!! | ATTGTGTTGTTTTCATGAGT+CGG | + | chr4.4:48967870-48967889 | None:intergenic | 30.0% |
| AAGTGTGAACATATCAACAG+GGG | - | chr4.4:48968152-48968171 | MS.gene97654:CDS | 35.0% | |
| AGTACCAGAGTTATCATTTG+TGG | + | chr4.4:48968388-48968407 | None:intergenic | 35.0% | |
| CAACTATTGGCAACAAAATC+AGG | - | chr4.4:48967910-48967929 | MS.gene97654:CDS | 35.0% | |
| CATTGTTGGAATCCTAAGAA+AGG | - | chr4.4:48967822-48967841 | MS.gene97654:CDS | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | - | chr4.4:48967897-48967916 | MS.gene97654:CDS | 35.0% | |
| CCAATAGTTGTGAATTGAGT+TGG | + | chr4.4:48967900-48967919 | None:intergenic | 35.0% | |
| GAAGTGTGAACATATCAACA+GGG | - | chr4.4:48968151-48968170 | MS.gene97654:CDS | 35.0% | |
| GCAACAGAAAAGAAATCCAT+AGG | + | chr4.4:48968255-48968274 | None:intergenic | 35.0% | |
| GTACCAGAGTTATCATTTGT+GGG | + | chr4.4:48968387-48968406 | None:intergenic | 35.0% | |
| TAGGATTCCAACAATGTCAA+CGG | + | chr4.4:48967818-48967837 | None:intergenic | 35.0% | |
| TATTGGCAACAAAATCAGGT+GGG | - | chr4.4:48967914-48967933 | MS.gene97654:CDS | 35.0% | |
| ! | GGATTTCTTTTCTGTTGCTA+AGG | - | chr4.4:48968257-48968276 | MS.gene97654:CDS | 35.0% |
| ! | TTGTTTTCATGAGTCGGATT+AGG | + | chr4.4:48967864-48967883 | None:intergenic | 35.0% |
| !! | AATGAAGGTACCAATGGTTT+AGG | + | chr4.4:48967754-48967773 | None:intergenic | 35.0% |
| !! | ATGAAGGTACCAATGGTTTA+GGG | + | chr4.4:48967753-48967772 | None:intergenic | 35.0% |
| AACGACTCCAAAAGCTGATA+AGG | - | chr4.4:48968320-48968339 | MS.gene97654:CDS | 40.0% | |
| AAGCCCACAAATGATAACTC+TGG | - | chr4.4:48968381-48968400 | MS.gene97654:CDS | 40.0% | |
| ATTGGTACCTTCATTACCAG+AGG | - | chr4.4:48967759-48967778 | MS.gene97654:CDS | 40.0% | |
| CTATTGGCAACAAAATCAGG+TGG | - | chr4.4:48967913-48967932 | MS.gene97654:CDS | 40.0% | |
| CTGAATGTGATAAGTTACGG+TGG | - | chr4.4:48968129-48968148 | MS.gene97654:CDS | 40.0% | |
| TTGGGATAAAGTAGTGGTAG+TGG | + | chr4.4:48967668-48967687 | None:intergenic | 40.0% | |
| ! | GGAAGTGTGAACATATCAAC+AGG | - | chr4.4:48968150-48968169 | MS.gene97654:CDS | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+TGG | + | chr4.4:48967760-48967779 | None:intergenic | 40.0% |
| !! | TGAAGGTACCAATGGTTTAG+GGG | + | chr4.4:48967752-48967771 | None:intergenic | 40.0% |
| ACAGATGAATCCGAGGAATC+TGG | + | chr4.4:48968360-48968379 | None:intergenic | 45.0% | |
| ACATTCAGTTCCACCTTTCC+GGG | + | chr4.4:48968117-48968136 | None:intergenic | 45.0% | |
| AGCAGCAGCTGGTGATAATT+GGG | + | chr4.4:48967686-48967705 | None:intergenic | 45.0% | |
| CACATTCAGTTCCACCTTTC+CGG | + | chr4.4:48968118-48968137 | None:intergenic | 45.0% | |
| CAGCTCAAGTTTCTGTCCAT+CGG | + | chr4.4:48968007-48968026 | None:intergenic | 45.0% | |
| GAAGTGAACACAACGATCGA+TGG | - | chr4.4:48968174-48968193 | MS.gene97654:CDS | 45.0% | |
| TTCCTCAACTCACTTTCCGA+TGG | - | chr4.4:48967988-48968007 | MS.gene97654:CDS | 45.0% | |
| ! | GCTGGTAATGTAGGGTGTAT+TGG | + | chr4.4:48967709-48967728 | None:intergenic | 45.0% |
| ! | GGCTTCTCCTTATCAGCTTT+TGG | + | chr4.4:48968330-48968349 | None:intergenic | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | - | chr4.4:48968236-48968255 | MS.gene97654:CDS | 45.0% |
| ! | TGGGTTGACAATTCTTGCAC+CGG | - | chr4.4:48967933-48967952 | MS.gene97654:CDS | 45.0% |
| ! | TGGTTGGAGCTGGTAATGTA+GGG | + | chr4.4:48967717-48967736 | None:intergenic | 45.0% |
| !! | TCCTGCTTTGAGTTGTGAGA+AGG | + | chr4.4:48967968-48967987 | None:intergenic | 45.0% |
| !!! | AAGTGGGCGTCTCTTGTTTT+TGG | - | chr4.4:48968429-48968448 | MS.gene97654:CDS | 45.0% |
| !!! | GCTTTTGGAGTCGTTGTTGA+AGG | + | chr4.4:48968315-48968334 | None:intergenic | 45.0% |
| AACCCTGTGAGAACACTTGC+TGG | - | chr4.4:48968084-48968103 | MS.gene97654:CDS | 50.0% | |
| ATTCCACCCCTGACAGTTCA+GGG | - | chr4.4:48967791-48967810 | MS.gene97654:CDS | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | + | chr4.4:48968089-48968108 | None:intergenic | 50.0% | |
| GAGCAGCAGCTGGTGATAAT+TGG | + | chr4.4:48967687-48967706 | None:intergenic | 50.0% | |
| GCCATTATCGCCAGATTCCT+CGG | - | chr4.4:48968347-48968366 | MS.gene97654:CDS | 50.0% | |
| GCCTTCTCACAACTCAAAGC+AGG | - | chr4.4:48967964-48967983 | MS.gene97654:CDS | 50.0% | |
| GGGCTTAACAGATGAATCCG+AGG | + | chr4.4:48968367-48968386 | None:intergenic | 50.0% | |
| GTCCATCGGAAAGTGAGTTG+AGG | + | chr4.4:48967993-48968012 | None:intergenic | 50.0% | |
| TCCGAGGAATCTGGCGATAA+TGG | + | chr4.4:48968351-48968370 | None:intergenic | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | - | chr4.4:48968096-48968115 | MS.gene97654:CDS | 50.0% |
| ! | GTGGTTGGAGCTGGTAATGT+AGG | + | chr4.4:48967718-48967737 | None:intergenic | 50.0% |
| !! | TGTGAGAAGGCGTTGTCATC+CGG | + | chr4.4:48967955-48967974 | None:intergenic | 50.0% |
| AATGGTTTAGGGGCTGCAGC+TGG | + | chr4.4:48967742-48967761 | None:intergenic | 55.0% | |
| ACCGACGAAGGGACTGTCTT+TGG | - | chr4.4:48968281-48968300 | MS.gene97654:CDS | 55.0% | |
| ACTGTCAGGGGTGGAATCAC+TGG | + | chr4.4:48967788-48967807 | None:intergenic | 55.0% | |
| AGCTGCAGCCCCTAAACCAT+TGG | - | chr4.4:48967741-48967760 | MS.gene97654:CDS | 55.0% | |
| CTGTCAGGGGTGGAATCACT+GGG | + | chr4.4:48967787-48967806 | None:intergenic | 55.0% | |
| GATTCCACCCCTGACAGTTC+AGG | - | chr4.4:48967790-48967809 | MS.gene97654:CDS | 55.0% | |
| GCCAAAGACAGTCCCTTCGT+CGG | + | chr4.4:48968285-48968304 | None:intergenic | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | + | chr4.4:48968090-48968109 | None:intergenic | 55.0% | |
| GGAGTCGTTGTTGAAGGCTC+TGG | + | chr4.4:48968309-48968328 | None:intergenic | 55.0% | |
| TCAGGGGCCGTTGACATTGT+TGG | - | chr4.4:48967808-48967827 | MS.gene97654:CDS | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | - | chr4.4:48968101-48968120 | MS.gene97654:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | - | chr4.4:48968104-48968123 | MS.gene97654:CDS | 55.0% | |
| TTCCACCCCTGACAGTTCAG+GGG | - | chr4.4:48967792-48967811 | MS.gene97654:CDS | 55.0% | |
| ! | CTGGGTGCCTCTGGTAATGA+AGG | + | chr4.4:48967769-48967788 | None:intergenic | 55.0% |
| !! | GTTGCTAAGGCACCGACGAA+GGG | - | chr4.4:48968270-48968289 | MS.gene97654:CDS | 55.0% |
| !! | TGTTGCTAAGGCACCGACGA+AGG | - | chr4.4:48968269-48968288 | MS.gene97654:CDS | 55.0% |
| AACGGCCCCTGAACTGTCAG+GGG | + | chr4.4:48967800-48967819 | None:intergenic | 60.0% | |
| CAACGGCCCCTGAACTGTCA+GGG | + | chr4.4:48967801-48967820 | None:intergenic | 60.0% | |
| GGGTGTATTGGAGCAGCAGC+TGG | + | chr4.4:48967697-48967716 | None:intergenic | 60.0% | |
| GTGGAATCACTGGGTGCCTC+TGG | + | chr4.4:48967778-48967797 | None:intergenic | 60.0% | |
| TCAACGGCCCCTGAACTGTC+AGG | + | chr4.4:48967802-48967821 | None:intergenic | 60.0% | |
| TTTAGGGGCTGCAGCTGGTG+TGG | + | chr4.4:48967737-48967756 | None:intergenic | 60.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | + | chr4.4:48967727-48967746 | None:intergenic | 65.0% | |
| GGCCCCTGAACTGTCAGGGG+TGG | + | chr4.4:48967797-48967816 | None:intergenic | 70.0% | |
| GGGGCTGCAGCTGGTGTGGT+TGG | + | chr4.4:48967733-48967752 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 48967598 | 48968482 | 48967598 | ID=MS.gene97654 |
| chr4.4 | mRNA | 48967598 | 48968482 | 48967598 | ID=MS.gene97654.t1;Parent=MS.gene97654 |
| chr4.4 | exon | 48967598 | 48968482 | 48967598 | ID=MS.gene97654.t1.exon1;Parent=MS.gene97654.t1 |
| chr4.4 | CDS | 48967598 | 48968482 | 48967598 | ID=cds.MS.gene97654.t1;Parent=MS.gene97654.t1 |
| Gene Sequence |
| Protein sequence |
