Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97719.t1 | XP_003612840.2 | 97.1 | 241 | 7 | 0 | 1 | 241 | 1 | 241 | 1.80E-109 | 405.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97719.t1 | P93654 | 67.8 | 245 | 71 | 2 | 1 | 241 | 1 | 241 | 4.7e-66 | 252.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97719.t1 | G7KCF3 | 97.1 | 241 | 7 | 0 | 1 | 241 | 1 | 241 | 1.3e-109 | 405.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97719 | MS.gene02663 | PPI |
| MS.gene97719 | MS.gene052932 | PPI |
| MS.gene013657 | MS.gene97719 | PPI |
| MS.gene97719 | MS.gene81965 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97719.t1 | MTR_5g029650 | 97.015 | 268 | 8 | 0 | 1 | 268 | 1 | 268 | 0.0 | 525 |
| MS.gene97719.t1 | MTR_8g066340 | 84.351 | 262 | 35 | 1 | 1 | 256 | 1 | 262 | 4.48e-150 | 420 |
| MS.gene97719.t1 | MTR_7g084590 | 55.639 | 266 | 116 | 1 | 1 | 266 | 1 | 264 | 2.30e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97719.t1 | AT5G46860 | 76.923 | 260 | 52 | 2 | 1 | 256 | 1 | 256 | 2.25e-141 | 398 |
| MS.gene97719.t1 | AT4G17730 | 72.137 | 262 | 58 | 5 | 1 | 251 | 1 | 258 | 2.00e-113 | 327 |
| MS.gene97719.t1 | AT4G17730 | 74.797 | 246 | 51 | 3 | 1 | 236 | 1 | 245 | 6.89e-113 | 325 |
| MS.gene97719.t1 | AT5G16830 | 61.940 | 268 | 89 | 3 | 1 | 256 | 1 | 267 | 3.52e-112 | 324 |
| MS.gene97719.t1 | AT1G32270 | 54.545 | 242 | 89 | 5 | 26 | 252 | 106 | 341 | 5.39e-74 | 229 |
| MS.gene97719.t1 | AT1G32270 | 54.545 | 231 | 84 | 5 | 26 | 241 | 106 | 330 | 5.72e-68 | 216 |
| MS.gene97719.t1 | AT3G05710 | 33.673 | 98 | 64 | 1 | 169 | 265 | 228 | 325 | 7.53e-11 | 62.0 |
| MS.gene97719.t1 | AT3G05710 | 33.673 | 98 | 64 | 1 | 169 | 265 | 229 | 326 | 8.15e-11 | 62.0 |
Find 58 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCTTATGGTGATATT+TGG | 0.212835 | 5.1:+20253961 | MS.gene97719:CDS |
| GCGGAGTTCGGGCGTGTCTT+TGG | 0.216250 | 5.1:-20250724 | None:intergenic |
| CGGAGTTCGGGCGTGTCTTT+GGG | 0.218987 | 5.1:-20250723 | None:intergenic |
| TATCTAGGTGTGCTTGCTTA+TGG | 0.245928 | 5.1:+20253951 | MS.gene97719:intron |
| TTTAGCATCTGCTATCTTCT+TGG | 0.250765 | 5.1:-20252123 | None:intergenic |
| AGAACAGCATGCCCTTCTTT+TGG | 0.264144 | 5.1:+20252434 | MS.gene97719:CDS |
| TCACAGTTTCTCGCGGAGTT+CGG | 0.312554 | 5.1:-20250736 | None:intergenic |
| GAAGATAGCAGATGCTAAAT+TGG | 0.316353 | 5.1:+20252127 | MS.gene97719:CDS |
| CACAGTTTCTCGCGGAGTTC+GGG | 0.319462 | 5.1:-20250735 | None:intergenic |
| CCGACGCAAGCGGTGGCTTC+CGG | 0.363763 | 5.1:+20250639 | MS.gene97719:CDS |
| GAAGGAAATCTCATTATCTA+AGG | 0.366500 | 5.1:-20253050 | None:intergenic |
| GGTCTTGTTTGCCGTTGATT+TGG | 0.369827 | 5.1:-20250617 | None:intergenic |
| TTACTTCACCTATCTGCTGC+TGG | 0.383436 | 5.1:-20253117 | None:intergenic |
| ACAAAGATCAAGCTCATCTT+TGG | 0.398928 | 5.1:+20253424 | MS.gene97719:CDS |
| GAGACTTCATATTGGACAAT+TGG | 0.402688 | 5.1:+20250852 | MS.gene97719:CDS |
| TGAACTTCATGCGGAACAAA+AGG | 0.407928 | 5.1:-20252227 | None:intergenic |
| CTCAATGATAGCCTCATTGA+AGG | 0.411578 | 5.1:-20253068 | None:intergenic |
| TTTCCGCCCTGCAGCTATAC+AGG | 0.432436 | 5.1:+20252378 | MS.gene97719:intron |
| GTTGATTTGGTTTCGCCGGC+CGG | 0.434566 | 5.1:-20250604 | None:intergenic |
| CGCATGAAGTTCAGCCATCC+AGG | 0.441605 | 5.1:+20252237 | MS.gene97719:CDS |
| CGGAAGCCACCGCTTGCGTC+GGG | 0.447393 | 5.1:-20250638 | None:intergenic |
| CACAAGACGAGACTTCATAT+TGG | 0.470035 | 5.1:+20250844 | MS.gene97719:CDS |
| CAAGAAATCCAGCAGCAGAT+AGG | 0.473920 | 5.1:+20253109 | MS.gene97719:CDS |
| CCGGAAGCCACCGCTTGCGT+CGG | 0.480970 | 5.1:-20250639 | None:intergenic |
| CAAAGACTCGTTAACACTCT+CGG | 0.483611 | 5.1:+20250696 | MS.gene97719:CDS |
| CATGAGCAAGGAGCAATGAT+TGG | 0.486298 | 5.1:+20253172 | MS.gene97719:CDS |
| TTCATGAGAATTCTCAATGT+TGG | 0.493350 | 5.1:-20253357 | None:intergenic |
| GTTAACGAGTCTTTGAAAAG+TGG | 0.494005 | 5.1:-20250688 | None:intergenic |
| TGCCGTTGATTTGGTTTCGC+CGG | 0.496080 | 5.1:-20250608 | None:intergenic |
| ACCTTCGGGATTCCAAAAGA+AGG | 0.499658 | 5.1:-20252446 | None:intergenic |
| CTTCAATGAGGCTATCATTG+AGG | 0.510978 | 5.1:+20253069 | MS.gene97719:CDS |
| GGAGTTCGGGCGTGTCTTTG+GGG | 0.514990 | 5.1:-20250722 | None:intergenic |
| GAACTTCATGCGGAACAAAA+GGG | 0.520568 | 5.1:-20252226 | None:intergenic |
| TTCTCATGAAGCCACTGCCC+AGG | 0.520606 | 5.1:+20253370 | MS.gene97719:CDS |
| GCTGTGCTTGTTCATGAGCA+AGG | 0.528114 | 5.1:+20253160 | MS.gene97719:CDS |
| CACAACGTCTTGCAGCTGAG+AGG | 0.569413 | 5.1:+20252189 | MS.gene97719:CDS |
| GGCCGGCGAAACCAAATCAA+CGG | 0.570331 | 5.1:+20250606 | MS.gene97719:CDS |
| ACAACGTCTTGCAGCTGAGA+GGG | 0.574975 | 5.1:+20252190 | MS.gene97719:CDS |
| GAGTTCGGGCGTGTCTTTGG+GGG | 0.575373 | 5.1:-20250721 | None:intergenic |
| ACAGGCAGTGAAGTAGGTGT+TGG | 0.583523 | 5.1:+20252396 | MS.gene97719:CDS |
| TTCAAGACTTAGAATCCGGC+CGG | 0.585824 | 5.1:+20250589 | MS.gene97719:CDS |
| ACAATTGGTGAAGGATACTT+CGG | 0.586301 | 5.1:+20250867 | MS.gene97719:CDS |
| AACTTCATGCGGAACAAAAG+GGG | 0.589750 | 5.1:-20252225 | None:intergenic |
| CAAACAAGACCCGACGCAAG+CGG | 0.590133 | 5.1:+20250629 | MS.gene97719:CDS |
| AGCTATACAGGCAGTGAAGT+AGG | 0.592494 | 5.1:+20252390 | MS.gene97719:intron |
| CCTTCGGGATTCCAAAAGAA+GGG | 0.599367 | 5.1:-20252445 | None:intergenic |
| TAATGAGATTTCCTTCAATG+AGG | 0.608273 | 5.1:+20253057 | MS.gene97719:CDS |
| ATCATTGAGGAAAGAGAACA+AGG | 0.615134 | 5.1:+20253082 | MS.gene97719:CDS |
| TCATATTGGACAATTGGTGA+AGG | 0.616859 | 5.1:+20250858 | MS.gene97719:CDS |
| CTGGATGGCTGAACTTCATG+CGG | 0.617705 | 5.1:-20252236 | None:intergenic |
| ACAAGACCCGACGCAAGCGG+TGG | 0.618607 | 5.1:+20250632 | MS.gene97719:CDS |
| AGTGTTGAAAGAATTTCAGA+AGG | 0.622981 | 5.1:+20252166 | MS.gene97719:CDS |
| GGCGTGTTTCAGATCAACAC+CGG | 0.629815 | 5.1:+20250660 | MS.gene97719:CDS |
| TTATTCATTCTGCAGACAGG+AGG | 0.640635 | 5.1:+20253021 | MS.gene97719:intron |
| ACATTGGTCAGTCACCTGGA+TGG | 0.644850 | 5.1:-20252251 | None:intergenic |
| TGATCTCTCACAGTTTCTCG+CGG | 0.652360 | 5.1:-20250743 | None:intergenic |
| TCTTTGAAAAGTGGAGACGC+CGG | 0.693274 | 5.1:-20250679 | None:intergenic |
| GGTGTTGATCTGAAACACGC+CGG | 0.724240 | 5.1:-20250658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAATATCTTGAAAA+TGG | - | chr5.1:20252517-20252536 | None:intergenic | 10.0% |
| !! | ATAAATTATATGAAATTTGT+CGG | - | chr5.1:20251125-20251144 | None:intergenic | 10.0% |
| !! | ATATACTATCAATAAAAATA+TGG | + | chr5.1:20251418-20251437 | MS.gene97719:intron | 10.0% |
| !! | TTACATATAAATAATACAAT+AGG | - | chr5.1:20252822-20252841 | None:intergenic | 10.0% |
| !! | AATTTCTTTATTGTATTTAC+AGG | + | chr5.1:20252097-20252116 | MS.gene97719:intron | 15.0% |
| !! | ACACAAATATAATGAATTTA+GGG | + | chr5.1:20251069-20251088 | MS.gene97719:intron | 15.0% |
| !! | AGTATATAGTTAATAACTTT+AGG | + | chr5.1:20253617-20253636 | MS.gene97719:intron | 15.0% |
| !! | ATTATATTTGTGTAGTTTAT+GGG | - | chr5.1:20251062-20251081 | None:intergenic | 15.0% |
| !! | GACAAATTTCATATAATTTA+TGG | + | chr5.1:20251124-20251143 | MS.gene97719:intron | 15.0% |
| !! | TACACAAATATAATGAATTT+AGG | + | chr5.1:20251068-20251087 | MS.gene97719:intron | 15.0% |
| !! | TATCACATCATATATTATAA+TGG | - | chr5.1:20252592-20252611 | None:intergenic | 15.0% |
| !! | TTATTAACTATATACTATGT+AGG | - | chr5.1:20253613-20253632 | None:intergenic | 15.0% |
| !!! | CTTTAAAAGATAAAAGAAAA+AGG | - | chr5.1:20253871-20253890 | None:intergenic | 15.0% |
| !!! | TTCAATTTTAAGATATTGAT+TGG | + | chr5.1:20250804-20250823 | MS.gene97719:intron | 15.0% |
| !! | AAGAAACTAAAACAATCAAA+TGG | - | chr5.1:20252991-20253010 | None:intergenic | 20.0% |
| !! | AATAAACAACTAACAAAACA+TGG | - | chr5.1:20252014-20252033 | None:intergenic | 20.0% |
| !! | ATTTCTATTTATATGGAGAA+AGG | + | chr5.1:20253736-20253755 | MS.gene97719:intron | 20.0% |
| !! | CATTATATTTGTGTAGTTTA+TGG | - | chr5.1:20251063-20251082 | None:intergenic | 20.0% |
| !! | GCAAATTAATCAAAATGTAA+TGG | + | chr5.1:20250990-20251009 | MS.gene97719:intron | 20.0% |
| !! | TATTAATTTAGGGACTAAAT+TGG | + | chr5.1:20251158-20251177 | MS.gene97719:intron | 20.0% |
| !! | TATTGTACTGAACATAAATA+AGG | + | chr5.1:20253581-20253600 | MS.gene97719:intron | 20.0% |
| !! | TCTAATTGATCATAATGAAT+CGG | + | chr5.1:20251895-20251914 | MS.gene97719:intron | 20.0% |
| !! | TTTCTATTTATATGGAGAAA+GGG | + | chr5.1:20253737-20253756 | MS.gene97719:intron | 20.0% |
| !!! | AACATCAATTATTTCTCAAA+AGG | + | chr5.1:20252779-20252798 | MS.gene97719:intron | 20.0% |
| !!! | AATAACTTTAGGAGTTAAAA+AGG | + | chr5.1:20253628-20253647 | MS.gene97719:intron | 20.0% |
| !!! | ATAACTTTAGGAGTTAAAAA+GGG | + | chr5.1:20253629-20253648 | MS.gene97719:intron | 20.0% |
| !!! | GATTGGTAATTTGTTTATAT+AGG | + | chr5.1:20250821-20250840 | MS.gene97719:intron | 20.0% |
| !!! | GCATTCTATTTCTATTTATA+TGG | + | chr5.1:20253729-20253748 | MS.gene97719:intron | 20.0% |
| ! | ACTAAATTGACTGATACTTT+AGG | + | chr5.1:20251092-20251111 | MS.gene97719:intron | 25.0% |
| ! | ATAAAAAAATAAAGGGTGAG+AGG | - | chr5.1:20253208-20253227 | None:intergenic | 25.0% |
| ! | ATAAGATCATATATCATCGA+TGG | + | chr5.1:20251475-20251494 | MS.gene97719:intron | 25.0% |
| ! | ATTATTATCCGAAGTTTATG+AGG | - | chr5.1:20252563-20252582 | None:intergenic | 25.0% |
| ! | CTAAATTGACTGATACTTTA+GGG | + | chr5.1:20251093-20251112 | MS.gene97719:intron | 25.0% |
| ! | CTAATTGATCATAATGAATC+GGG | + | chr5.1:20251896-20251915 | MS.gene97719:intron | 25.0% |
| ! | CTATTAAACTCCAATAACAT+TGG | - | chr5.1:20252270-20252289 | None:intergenic | 25.0% |
| ! | GAAAATCATGATCTATTCTA+AGG | - | chr5.1:20251867-20251886 | None:intergenic | 25.0% |
| ! | GAAATAGCTTATACATAACT+TGG | + | chr5.1:20251733-20251752 | MS.gene97719:intron | 25.0% |
| ! | GAAATGGAATTTATACCATA+AGG | + | chr5.1:20252854-20252873 | MS.gene97719:intron | 25.0% |
| ! | GTAATTATATTAGGCTGAAA+TGG | + | chr5.1:20252838-20252857 | MS.gene97719:intron | 25.0% |
| ! | TAAAAAAATAAAGGGTGAGA+GGG | - | chr5.1:20253207-20253226 | None:intergenic | 25.0% |
| ! | TCATCAAATTTAATTGCATG+TGG | - | chr5.1:20252945-20252964 | None:intergenic | 25.0% |
| !! | CAGCTCAATTTTCTAATTAT+GGG | + | chr5.1:20253820-20253839 | MS.gene97719:intron | 25.0% |
| !! | TAACATAAATTAGTCTAGAC+CGG | - | chr5.1:20253273-20253292 | None:intergenic | 25.0% |
| !! | TAACTTTAGGAGTTAAAAAG+GGG | + | chr5.1:20253630-20253649 | MS.gene97719:intron | 25.0% |
| !! | TCAGCTCAATTTTCTAATTA+TGG | + | chr5.1:20253819-20253838 | MS.gene97719:intron | 25.0% |
| !! | TTCATTTTGTAGATGACATT+GGG | + | chr5.1:20253333-20253352 | MS.gene97719:intron | 25.0% |
| !! | TTTCATTTTGTAGATGACAT+TGG | + | chr5.1:20253332-20253351 | MS.gene97719:intron | 25.0% |
| !!! | ATGTCATAAGTTGTTTTCAT+AGG | - | chr5.1:20251606-20251625 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGAAAATTGACTG+AGG | + | chr5.1:20251216-20251235 | MS.gene97719:intron | 25.0% |
| !!! | CTGTTTTGATTGACTTATTT+GGG | + | chr5.1:20251538-20251557 | MS.gene97719:intron | 25.0% |
| !!! | TCTGTTTTGATTGACTTATT+TGG | + | chr5.1:20251537-20251556 | MS.gene97719:intron | 25.0% |
| !!! | TCTTTTTATAATTGGGTTGT+TGG | + | chr5.1:20253460-20253479 | MS.gene97719:intron | 25.0% |
| !!! | TTCTTTTGAAAATTGACTGA+GGG | + | chr5.1:20251217-20251236 | MS.gene97719:intron | 25.0% |
| AAAAAAATAAAGGGTGAGAG+GGG | - | chr5.1:20253206-20253225 | None:intergenic | 30.0% | |
| AAAATTCATGTCACAAACCA+AGG | + | chr5.1:20251513-20251532 | MS.gene97719:intron | 30.0% | |
| AAACATTTATTCCACAAGCA+TGG | - | chr5.1:20251312-20251331 | None:intergenic | 30.0% | |
| AAATTCATGTCACAAACCAA+GGG | + | chr5.1:20251514-20251533 | MS.gene97719:intron | 30.0% | |
| AAGATACAAGAAATCACCTT+CGG | - | chr5.1:20252464-20252483 | None:intergenic | 30.0% | |
| ATGACTATACAAAGTTTAGG+AGG | + | chr5.1:20251837-20251856 | MS.gene97719:intron | 30.0% | |
| ATTGGAGTTTAATAGTCGAA+AGG | + | chr5.1:20252275-20252294 | MS.gene97719:intron | 30.0% | |
| ATTGTGCAATACTTATAGCA+CGG | + | chr5.1:20252348-20252367 | MS.gene97719:intron | 30.0% | |
| CAATGGCTACATATTCTATT+AGG | - | chr5.1:20253671-20253690 | None:intergenic | 30.0% | |
| CACCAAATTAATTTAGGTGT+GGG | + | chr5.1:20253504-20253523 | MS.gene97719:intron | 30.0% | |
| CATGCATTTGCAAATTTATG+AGG | + | chr5.1:20252653-20252672 | MS.gene97719:intron | 30.0% | |
| CTAATAGAATATGTAGCCAT+TGG | + | chr5.1:20253669-20253688 | MS.gene97719:intron | 30.0% | |
| GAAGGAAATCTCATTATCTA+AGG | - | chr5.1:20253053-20253072 | None:intergenic | 30.0% | |
| TAATGAGATTTCCTTCAATG+AGG | + | chr5.1:20253057-20253076 | MS.gene97719:CDS | 30.0% | |
| TATACCTTCCTCATAAACTT+CGG | + | chr5.1:20252552-20252571 | MS.gene97719:intron | 30.0% | |
| TATGTTCAGTACAATATGTG+AGG | - | chr5.1:20253577-20253596 | None:intergenic | 30.0% | |
| TATTGCACAATTGTATGCAT+AGG | - | chr5.1:20252339-20252358 | None:intergenic | 30.0% | |
| TCAGCAACATAATAAATGCA+AGG | + | chr5.1:20252724-20252743 | MS.gene97719:intron | 30.0% | |
| TCTATCAACTCTAATGTTAC+CGG | + | chr5.1:20253251-20253270 | MS.gene97719:intron | 30.0% | |
| TCTATCACACTTAAGTGAAA+AGG | - | chr5.1:20251288-20251307 | None:intergenic | 30.0% | |
| TGGATGACTATACAAAGTTT+AGG | + | chr5.1:20251834-20251853 | MS.gene97719:intron | 30.0% | |
| TTCATGAGAATTCTCAATGT+TGG | - | chr5.1:20253360-20253379 | None:intergenic | 30.0% | |
| TTCCCACACCTAAATTAATT+TGG | - | chr5.1:20253509-20253528 | None:intergenic | 30.0% | |
| TTGGAGTTTAATAGTCGAAA+GGG | + | chr5.1:20252276-20252295 | MS.gene97719:intron | 30.0% | |
| ! | AGTGTTGAAAGAATTTCAGA+AGG | + | chr5.1:20252166-20252185 | MS.gene97719:CDS | 30.0% |
| ! | ATGCTGTTCTTGACTTTTAT+CGG | - | chr5.1:20252424-20252443 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTTACCCAAAC+AGG | + | chr5.1:20251780-20251799 | MS.gene97719:intron | 30.0% |
| ! | CACACCTAAATTAATTTGGT+GGG | - | chr5.1:20253505-20253524 | None:intergenic | 30.0% |
| ! | GATTTTGTTGACATGATCAT+TGG | + | chr5.1:20252909-20252928 | MS.gene97719:intron | 30.0% |
| ! | GTCAAATAAAGCACTTGATT+TGG | - | chr5.1:20251808-20251827 | None:intergenic | 30.0% |
| ! | TAAATTGGCGAAAGATTTTC+AGG | + | chr5.1:20252142-20252161 | MS.gene97719:CDS | 30.0% |
| ! | TAGCTTGTAAAGACAACTTA+TGG | + | chr5.1:20251669-20251688 | MS.gene97719:intron | 30.0% |
| ! | TGGAATAAATGTTTGTTGCT+TGG | + | chr5.1:20251318-20251337 | MS.gene97719:intron | 30.0% |
| ! | TGGGCTAAATTGATGATTTA+TGG | - | chr5.1:20251043-20251062 | None:intergenic | 30.0% |
| ! | TTAAGTTGTTTACCCAAACA+GGG | + | chr5.1:20251781-20251800 | MS.gene97719:intron | 30.0% |
| !! | AGTTTTCAAGACTTAGAATC+CGG | + | chr5.1:20250585-20250604 | MS.gene97719:CDS | 30.0% |
| AAGCACTTGTGAGACTATTT+AGG | + | chr5.1:20251576-20251595 | MS.gene97719:intron | 35.0% | |
| ACAAAGATCAAGCTCATCTT+TGG | + | chr5.1:20253424-20253443 | MS.gene97719:CDS | 35.0% | |
| ACAATTGGTGAAGGATACTT+CGG | + | chr5.1:20250867-20250886 | MS.gene97719:CDS | 35.0% | |
| ACTCTTCATTATCGCTGAAT+TGG | + | chr5.1:20250765-20250784 | MS.gene97719:intron | 35.0% | |
| ACTGTACTGAATTGTACCAA+TGG | - | chr5.1:20253688-20253707 | None:intergenic | 35.0% | |
| ACTTAAAAGAAGTCGCCTTA+TGG | - | chr5.1:20252872-20252891 | None:intergenic | 35.0% | |
| AGATACAAGAAATCACCTTC+GGG | - | chr5.1:20252463-20252482 | None:intergenic | 35.0% | |
| ATCATTGAGGAAAGAGAACA+AGG | + | chr5.1:20253082-20253101 | MS.gene97719:CDS | 35.0% | |
| CCACCAAATTAATTTAGGTG+TGG | + | chr5.1:20253503-20253522 | MS.gene97719:intron | 35.0% | |
| GAAGATAGCAGATGCTAAAT+TGG | + | chr5.1:20252127-20252146 | MS.gene97719:CDS | 35.0% | |
| GAGACTTCATATTGGACAAT+TGG | + | chr5.1:20250852-20250871 | MS.gene97719:CDS | 35.0% | |
| GGTTTCGATTCACTAAACAA+TGG | - | chr5.1:20253552-20253571 | None:intergenic | 35.0% | |
| TAGTTCAGGGGTTAAATTGA+TGG | + | chr5.1:20251190-20251209 | MS.gene97719:intron | 35.0% | |
| TCATATTGGACAATTGGTGA+AGG | + | chr5.1:20250858-20250877 | MS.gene97719:CDS | 35.0% | |
| TCCTCCCACCAAATTAATTT+AGG | + | chr5.1:20253498-20253517 | MS.gene97719:intron | 35.0% | |
| TGAAAATTGACTGAGGGTTT+AGG | + | chr5.1:20251223-20251242 | MS.gene97719:intron | 35.0% | |
| TGCTTGCTTATGGTGATATT+TGG | + | chr5.1:20253961-20253980 | MS.gene97719:CDS | 35.0% | |
| TGGTACAATTCAGTACAGTA+TGG | + | chr5.1:20253689-20253708 | MS.gene97719:intron | 35.0% | |
| TTATCCGAAGTTTATGAGGA+AGG | - | chr5.1:20252559-20252578 | None:intergenic | 35.0% | |
| TTCAGTACAATATGTGAGGA+AGG | - | chr5.1:20253573-20253592 | None:intergenic | 35.0% | |
| TTGATAGAGGATGCATAGTT+AGG | - | chr5.1:20253239-20253258 | None:intergenic | 35.0% | |
| TTGTGCAATACTTATAGCAC+GGG | + | chr5.1:20252349-20252368 | MS.gene97719:intron | 35.0% | |
| TTTAGCATCTGCTATCTTCT+TGG | - | chr5.1:20252126-20252145 | None:intergenic | 35.0% | |
| TTTGTATAGTCATCCACACT+TGG | - | chr5.1:20251830-20251849 | None:intergenic | 35.0% | |
| ! | ACCTAAATTAATTTGGTGGG+AGG | - | chr5.1:20253502-20253521 | None:intergenic | 35.0% |
| ! | CCACACCTAAATTAATTTGG+TGG | - | chr5.1:20253506-20253525 | None:intergenic | 35.0% |
| ! | CGCTGAATTGGAAATTTTGT+TGG | + | chr5.1:20250777-20250796 | MS.gene97719:intron | 35.0% |
| ! | GTACAGTATGGTTTTCAGTT+TGG | + | chr5.1:20253701-20253720 | MS.gene97719:intron | 35.0% |
| ! | GTTAACGAGTCTTTGAAAAG+TGG | - | chr5.1:20250691-20250710 | None:intergenic | 35.0% |
| !! | ATGGAGAAAGGGATTTGTTT+TGG | + | chr5.1:20253748-20253767 | MS.gene97719:intron | 35.0% |
| !! | GGTAACATTAGAGTTGATAG+AGG | - | chr5.1:20253252-20253271 | None:intergenic | 35.0% |
| !! | TGGAGAAAGGGATTTGTTTT+GGG | + | chr5.1:20253749-20253768 | MS.gene97719:intron | 35.0% |
| !!! | CTTCTTTTAAGTTTTCTGGC+TGG | + | chr5.1:20252880-20252899 | MS.gene97719:intron | 35.0% |
| !!! | GCGACTTCTTTTAAGTTTTC+TGG | + | chr5.1:20252876-20252895 | MS.gene97719:intron | 35.0% |
| AACTTCATGCGGAACAAAAG+GGG | - | chr5.1:20252228-20252247 | None:intergenic | 40.0% | |
| AAGCACACCTAGATAAAAGG+GGG | - | chr5.1:20253946-20253965 | None:intergenic | 40.0% | |
| AATAACATTGGTCAGTCACC+TGG | - | chr5.1:20252258-20252277 | None:intergenic | 40.0% | |
| ACCAACCCATACCAAAGAAA+AGG | - | chr5.1:20252701-20252720 | None:intergenic | 40.0% | |
| AGCAAGCACACCTAGATAAA+AGG | - | chr5.1:20253949-20253968 | None:intergenic | 40.0% | |
| AGGTGACTGACCAATGTTAT+TGG | + | chr5.1:20252257-20252276 | MS.gene97719:intron | 40.0% | |
| AGTCAATCAAAACAGACCCT+TGG | - | chr5.1:20251533-20251552 | None:intergenic | 40.0% | |
| ATTGGAGAGAGTGATAGTTC+AGG | + | chr5.1:20251176-20251195 | MS.gene97719:intron | 40.0% | |
| CAAAGACTCGTTAACACTCT+CGG | + | chr5.1:20250696-20250715 | MS.gene97719:CDS | 40.0% | |
| CAAGCACACCTAGATAAAAG+GGG | - | chr5.1:20253947-20253966 | None:intergenic | 40.0% | |
| CACAAGACGAGACTTCATAT+TGG | + | chr5.1:20250844-20250863 | MS.gene97719:CDS | 40.0% | |
| CTCAATGATAGCCTCATTGA+AGG | - | chr5.1:20253071-20253090 | None:intergenic | 40.0% | |
| CTTCAATGAGGCTATCATTG+AGG | + | chr5.1:20253069-20253088 | MS.gene97719:CDS | 40.0% | |
| GAACTTCATGCGGAACAAAA+GGG | - | chr5.1:20252229-20252248 | None:intergenic | 40.0% | |
| GCAAGCACACCTAGATAAAA+GGG | - | chr5.1:20253948-20253967 | None:intergenic | 40.0% | |
| GCATTATTCATTCTGCAGAC+AGG | + | chr5.1:20253018-20253037 | MS.gene97719:intron | 40.0% | |
| TATCTAGGTGTGCTTGCTTA+TGG | + | chr5.1:20253951-20253970 | MS.gene97719:intron | 40.0% | |
| TGAACTTCATGCGGAACAAA+AGG | - | chr5.1:20252230-20252249 | None:intergenic | 40.0% | |
| TTATTCATTCTGCAGACAGG+AGG | + | chr5.1:20253021-20253040 | MS.gene97719:intron | 40.0% | |
| TTGGAGAGAGTGATAGTTCA+GGG | + | chr5.1:20251177-20251196 | MS.gene97719:intron | 40.0% | |
| ! | AACAAGTTGCGATTTTGCCT+GGG | - | chr5.1:20253390-20253409 | None:intergenic | 40.0% |
| ! | ATTAATTTGGTGGGAGGAAG+AGG | - | chr5.1:20253496-20253515 | None:intergenic | 40.0% |
| ! | CCTGTCCTTTTCTTTGGTAT+GGG | + | chr5.1:20252693-20252712 | MS.gene97719:intron | 40.0% |
| ! | TCCTGTCCTTTTCTTTGGTA+TGG | + | chr5.1:20252692-20252711 | MS.gene97719:intron | 40.0% |
| ! | TCCTTTTCTTTGGTATGGGT+TGG | + | chr5.1:20252697-20252716 | MS.gene97719:intron | 40.0% |
| !! | ACTTGATTTGGACCCTGTTT+GGG | - | chr5.1:20251796-20251815 | None:intergenic | 40.0% |
| !! | GTGCTTTATTTGACCAAGTG+TGG | + | chr5.1:20251814-20251833 | MS.gene97719:intron | 40.0% |
| !! | GTTGTTTCCCCCTTTTATCT+AGG | + | chr5.1:20253936-20253955 | MS.gene97719:intron | 40.0% |
| !!! | AGAAAGGGATTTGTTTTGGG+GGG | + | chr5.1:20253752-20253771 | MS.gene97719:intron | 40.0% |
| !!! | GAGAAAGGGATTTGTTTTGG+GGG | + | chr5.1:20253751-20253770 | MS.gene97719:intron | 40.0% |
| !!! | GGAGAAAGGGATTTGTTTTG+GGG | + | chr5.1:20253750-20253769 | MS.gene97719:intron | 40.0% |
| ACCTTCGGGATTCCAAAAGA+AGG | - | chr5.1:20252449-20252468 | None:intergenic | 45.0% | |
| AGCTATACAGGCAGTGAAGT+AGG | + | chr5.1:20252390-20252409 | MS.gene97719:intron | 45.0% | |
| CAAGAAATCCAGCAGCAGAT+AGG | + | chr5.1:20253109-20253128 | MS.gene97719:CDS | 45.0% | |
| CATGAGCAAGGAGCAATGAT+TGG | + | chr5.1:20253172-20253191 | MS.gene97719:CDS | 45.0% | |
| CCCATACCAAAGAAAAGGAC+AGG | - | chr5.1:20252696-20252715 | None:intergenic | 45.0% | |
| CCTTCGGGATTCCAAAAGAA+GGG | - | chr5.1:20252448-20252467 | None:intergenic | 45.0% | |
| GTGTGATAGAACCATGCTTG+TGG | + | chr5.1:20251298-20251317 | MS.gene97719:intron | 45.0% | |
| TGATCTCTCACAGTTTCTCG+CGG | - | chr5.1:20250746-20250765 | None:intergenic | 45.0% | |
| TGGAGAGAGTGATAGTTCAG+GGG | + | chr5.1:20251178-20251197 | MS.gene97719:intron | 45.0% | |
| TTACTTCACCTATCTGCTGC+TGG | - | chr5.1:20253120-20253139 | None:intergenic | 45.0% | |
| TTCAAGACTTAGAATCCGGC+CGG | + | chr5.1:20250589-20250608 | MS.gene97719:CDS | 45.0% | |
| ! | AGAACAGCATGCCCTTCTTT+TGG | + | chr5.1:20252434-20252453 | MS.gene97719:CDS | 45.0% |
| ! | GAACAAGTTGCGATTTTGCC+TGG | - | chr5.1:20253391-20253410 | None:intergenic | 45.0% |
| ! | GCACTTCCTGTCCTTTTCTT+TGG | + | chr5.1:20252687-20252706 | MS.gene97719:intron | 45.0% |
| ! | TCTTTGAAAAGTGGAGACGC+CGG | - | chr5.1:20250682-20250701 | None:intergenic | 45.0% |
| !! | CACTTGATTTGGACCCTGTT+TGG | - | chr5.1:20251797-20251816 | None:intergenic | 45.0% |
| !! | GGTCTTGTTTGCCGTTGATT+TGG | - | chr5.1:20250620-20250639 | None:intergenic | 45.0% |
| !! | AACAAAAAATAAAAAAATAA+AGG | - | chr5.1:20253216-20253235 | None:intergenic | 5.0% |
| !! | ACAAAAAATAAAAAAATAAA+GGG | - | chr5.1:20253215-20253234 | None:intergenic | 5.0% |
| !! | ACTAATTATATTATTAATTT+AGG | + | chr5.1:20251147-20251166 | MS.gene97719:intron | 5.0% |
| !! | CTAATTATATTATTAATTTA+GGG | + | chr5.1:20251148-20251167 | MS.gene97719:intron | 5.0% |
| !! | TATTTATATGTAATTATATT+AGG | + | chr5.1:20252829-20252848 | MS.gene97719:intron | 5.0% |
| !!! | ATAAATTTTCTTTTTATAAT+TGG | + | chr5.1:20253452-20253471 | MS.gene97719:intron | 5.0% |
| !!! | TAAATTTTCTTTTTATAATT+GGG | + | chr5.1:20253453-20253472 | MS.gene97719:intron | 5.0% |
| ACAACGTCTTGCAGCTGAGA+GGG | + | chr5.1:20252190-20252209 | MS.gene97719:CDS | 50.0% | |
| ACAGGCAGTGAAGTAGGTGT+TGG | + | chr5.1:20252396-20252415 | MS.gene97719:CDS | 50.0% | |
| ACATTGGTCAGTCACCTGGA+TGG | - | chr5.1:20252254-20252273 | None:intergenic | 50.0% | |
| CTGGATGGCTGAACTTCATG+CGG | - | chr5.1:20252239-20252258 | None:intergenic | 50.0% | |
| GCTGTGCTTGTTCATGAGCA+AGG | + | chr5.1:20253160-20253179 | MS.gene97719:CDS | 50.0% | |
| GGCGTGTTTCAGATCAACAC+CGG | + | chr5.1:20250660-20250679 | MS.gene97719:CDS | 50.0% | |
| TCACAGTTTCTCGCGGAGTT+CGG | - | chr5.1:20250739-20250758 | None:intergenic | 50.0% | |
| TCACTGCCTGTATAGCTGCA+GGG | - | chr5.1:20252387-20252406 | None:intergenic | 50.0% | |
| TTCACTGCCTGTATAGCTGC+AGG | - | chr5.1:20252388-20252407 | None:intergenic | 50.0% | |
| !! | GGTGTTGATCTGAAACACGC+CGG | - | chr5.1:20250661-20250680 | None:intergenic | 50.0% |
| !! | TGCCGTTGATTTGGTTTCGC+CGG | - | chr5.1:20250611-20250630 | None:intergenic | 50.0% |
| !!! | CCCTTCTTTTGGAATCCCGA+AGG | + | chr5.1:20252445-20252464 | MS.gene97719:CDS | 50.0% |
| CAAACAAGACCCGACGCAAG+CGG | + | chr5.1:20250629-20250648 | MS.gene97719:CDS | 55.0% | |
| CACAACGTCTTGCAGCTGAG+AGG | + | chr5.1:20252189-20252208 | MS.gene97719:CDS | 55.0% | |
| CACAGTTTCTCGCGGAGTTC+GGG | - | chr5.1:20250738-20250757 | None:intergenic | 55.0% | |
| CGCATGAAGTTCAGCCATCC+AGG | + | chr5.1:20252237-20252256 | MS.gene97719:CDS | 55.0% | |
| GGCCGGCGAAACCAAATCAA+CGG | + | chr5.1:20250606-20250625 | MS.gene97719:CDS | 55.0% | |
| TTCTCATGAAGCCACTGCCC+AGG | + | chr5.1:20253370-20253389 | MS.gene97719:CDS | 55.0% | |
| TTTCCGCCCTGCAGCTATAC+AGG | + | chr5.1:20252378-20252397 | MS.gene97719:intron | 55.0% | |
| ! | TTGCGATTTTGCCTGGGCAG+TGG | - | chr5.1:20253384-20253403 | None:intergenic | 55.0% |
| !! | GTTGATTTGGTTTCGCCGGC+CGG | - | chr5.1:20250607-20250626 | None:intergenic | 55.0% |
| !!! | AGGGATTTGTTTTGGGGGGC+AGG | + | chr5.1:20253756-20253775 | MS.gene97719:intron | 55.0% |
| !!! | GGATTTGTTTTGGGGGGCAG+GGG | + | chr5.1:20253758-20253777 | MS.gene97719:intron | 55.0% |
| !!! | GGGATTTGTTTTGGGGGGCA+GGG | + | chr5.1:20253757-20253776 | MS.gene97719:intron | 55.0% |
| CGGAGTTCGGGCGTGTCTTT+GGG | - | chr5.1:20250726-20250745 | None:intergenic | 60.0% | |
| CTGCCTGTATAGCTGCAGGG+CGG | - | chr5.1:20252384-20252403 | None:intergenic | 60.0% | |
| GAGTTCGGGCGTGTCTTTGG+GGG | - | chr5.1:20250724-20250743 | None:intergenic | 60.0% | |
| GGAGTTCGGGCGTGTCTTTG+GGG | - | chr5.1:20250725-20250744 | None:intergenic | 60.0% | |
| !! | GCAGGGGTGTGAGGTTTTGG+TGG | + | chr5.1:20253774-20253793 | MS.gene97719:intron | 60.0% |
| ACAAGACCCGACGCAAGCGG+TGG | + | chr5.1:20250632-20250651 | MS.gene97719:CDS | 65.0% | |
| GCGGAGTTCGGGCGTGTCTT+TGG | - | chr5.1:20250727-20250746 | None:intergenic | 65.0% | |
| !! | GGGGCAGGGGTGTGAGGTTT+TGG | + | chr5.1:20253771-20253790 | MS.gene97719:intron | 65.0% |
| !! | TTTTGGGGGGCAGGGGTGTG+AGG | + | chr5.1:20253765-20253784 | MS.gene97719:intron | 65.0% |
| CCGACGCAAGCGGTGGCTTC+CGG | + | chr5.1:20250639-20250658 | MS.gene97719:CDS | 70.0% | |
| CCGGAAGCCACCGCTTGCGT+CGG | - | chr5.1:20250642-20250661 | None:intergenic | 70.0% | |
| CGGAAGCCACCGCTTGCGTC+GGG | - | chr5.1:20250641-20250660 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 20250582 | 20254023 | 20250582 | ID=MS.gene97719 |
| chr5.1 | mRNA | 20250582 | 20254023 | 20250582 | ID=MS.gene97719.t1;Parent=MS.gene97719 |
| chr5.1 | exon | 20250582 | 20250754 | 20250582 | ID=MS.gene97719.t1.exon1;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20250582 | 20250754 | 20250582 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| chr5.1 | exon | 20250843 | 20250936 | 20250843 | ID=MS.gene97719.t1.exon2;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20250843 | 20250936 | 20250843 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| chr5.1 | exon | 20252119 | 20252258 | 20252119 | ID=MS.gene97719.t1.exon3;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20252119 | 20252258 | 20252119 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| chr5.1 | exon | 20252392 | 20252466 | 20252392 | ID=MS.gene97719.t1.exon4;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20252392 | 20252466 | 20252392 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| chr5.1 | exon | 20253036 | 20253193 | 20253036 | ID=MS.gene97719.t1.exon5;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20253036 | 20253193 | 20253036 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| chr5.1 | exon | 20253345 | 20253445 | 20253345 | ID=MS.gene97719.t1.exon6;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20253345 | 20253445 | 20253345 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| chr5.1 | exon | 20253958 | 20254023 | 20253958 | ID=MS.gene97719.t1.exon7;Parent=MS.gene97719.t1 |
| chr5.1 | CDS | 20253958 | 20254023 | 20253958 | ID=cds.MS.gene97719.t1;Parent=MS.gene97719.t1 |
| Gene Sequence |
| Protein sequence |
