Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97787.t1 | XP_004506293.1 | 63.1 | 287 | 59 | 6 | 1 | 240 | 186 | 472 | 6.30E-88 | 334 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97787.t1 | P36163 | 32.7 | 217 | 122 | 7 | 23 | 218 | 105 | 318 | 1.8e-22 | 107.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97787.t1 | A0A1S2YL59 | 63.1 | 287 | 59 | 6 | 1 | 240 | 186 | 472 | 4.5e-88 | 334.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060476 | MS.gene97787 | 0.811996 | 5.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97787.t1 | MTR_3g006860 | 60.279 | 287 | 67 | 6 | 1 | 240 | 244 | 530 | 2.30e-105 | 315 |
| MS.gene97787.t1 | MTR_6g463380 | 60.279 | 287 | 67 | 6 | 1 | 240 | 248 | 534 | 2.44e-105 | 315 |
| MS.gene97787.t1 | MTR_6g061650 | 52.016 | 248 | 93 | 5 | 2 | 234 | 77 | 313 | 1.87e-74 | 229 |
| MS.gene97787.t1 | MTR_6g463380 | 54.589 | 207 | 49 | 4 | 1 | 162 | 248 | 454 | 1.69e-63 | 205 |
| MS.gene97787.t1 | MTR_6g463380 | 54.634 | 205 | 48 | 4 | 1 | 160 | 248 | 452 | 1.69e-62 | 202 |
| MS.gene97787.t1 | MTR_6g079410 | 36.909 | 317 | 114 | 8 | 1 | 233 | 149 | 463 | 1.05e-44 | 156 |
| MS.gene97787.t1 | MTR_1g014390 | 37.302 | 252 | 91 | 6 | 2 | 237 | 92 | 292 | 8.47e-43 | 147 |
| MS.gene97787.t1 | MTR_7g025575 | 71.717 | 99 | 21 | 2 | 161 | 252 | 13 | 111 | 1.39e-40 | 136 |
| MS.gene97787.t1 | MTR_6g006850 | 36.078 | 255 | 127 | 6 | 2 | 234 | 62 | 302 | 1.09e-38 | 137 |
| MS.gene97787.t1 | MTR_1g029560 | 39.423 | 208 | 91 | 6 | 49 | 234 | 3 | 197 | 1.19e-37 | 131 |
| MS.gene97787.t1 | MTR_6g006710 | 33.594 | 256 | 98 | 7 | 4 | 233 | 78 | 287 | 4.20e-30 | 114 |
| MS.gene97787.t1 | MTR_1g012015 | 44.545 | 110 | 49 | 3 | 131 | 237 | 1 | 101 | 7.40e-24 | 92.8 |
| MS.gene97787.t1 | MTR_1g012010 | 31.034 | 174 | 79 | 3 | 2 | 162 | 95 | 240 | 1.93e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97787.t1 | AT5G51740 | 50.865 | 289 | 92 | 6 | 1 | 240 | 155 | 442 | 3.69e-86 | 263 |
| MS.gene97787.t1 | AT5G51740 | 50.865 | 289 | 92 | 6 | 1 | 240 | 198 | 485 | 1.19e-85 | 263 |
| MS.gene97787.t1 | AT5G51740 | 41.748 | 206 | 74 | 4 | 1 | 160 | 198 | 403 | 3.28e-44 | 154 |
Find 68 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATTGAATTGGGAGATTT+TGG | 0.167567 | 7.3:+82096517 | MS.gene97787:CDS |
| ACATCTACCATCAAGAATTT+TGG | 0.207633 | 7.3:-82099014 | None:intergenic |
| AGTTGGAGAGTTAGGATGAT+AGG | 0.273903 | 7.3:+82096338 | MS.gene97787:CDS |
| CACATTTGGATGGATTGAAT+TGG | 0.299543 | 7.3:+82096507 | MS.gene97787:CDS |
| AACAAGGAAGGGAAAGTTAA+AGG | 0.310763 | 7.3:+82096452 | MS.gene97787:CDS |
| AATCGTTACCGTCTGGAATA+AGG | 0.330702 | 7.3:-82097176 | None:intergenic |
| GTAAGAGCTTCTTCCATTAC+CGG | 0.360871 | 7.3:-82098919 | None:intergenic |
| AACTATACCAAAATTCTTGA+TGG | 0.375550 | 7.3:+82099007 | MS.gene97787:CDS |
| CAACTGTCAGGGTGTATTGC+AGG | 0.377654 | 7.3:-82096320 | None:intergenic |
| GCAACCTTCTACGTCACATT+TGG | 0.382375 | 7.3:+82096493 | MS.gene97787:CDS |
| CATCCCCTCAGCACCGTGTC+TGG | 0.386275 | 7.3:-82097057 | None:intergenic |
| CGTCAGCTGGCTATGATCCT+CGG | 0.406794 | 7.3:+82098782 | MS.gene97787:CDS |
| CCATCCAAATGTGACGTAGA+AGG | 0.412483 | 7.3:-82096497 | None:intergenic |
| ATCCTAACTCTCCAACTGTC+AGG | 0.412893 | 7.3:-82096332 | None:intergenic |
| ACATTTGGATGGATTGAATT+GGG | 0.413686 | 7.3:+82096508 | MS.gene97787:CDS |
| AAGGGAAAGTTAAAGGGAAT+TGG | 0.418284 | 7.3:+82096459 | MS.gene97787:CDS |
| CGAATGGATAAACGATCAAC+TGG | 0.422998 | 7.3:-82097106 | None:intergenic |
| GATAATCTTTATTTGTAGAA+TGG | 0.431313 | 7.3:-82098846 | None:intergenic |
| ACTATATATAAGAATGTAAG+AGG | 0.431802 | 7.3:+82098940 | MS.gene97787:CDS |
| ACAAGGAAGGGAAAGTTAAA+GGG | 0.434672 | 7.3:+82096453 | MS.gene97787:CDS |
| ACCCTGACAGTTGGAGAGTT+AGG | 0.437275 | 7.3:+82096330 | MS.gene97787:CDS |
| GTTGGAGAGTTAGGATGATA+GGG | 0.456652 | 7.3:+82096339 | MS.gene97787:CDS |
| TATCTCTCGACTCATCCATC+TGG | 0.472144 | 7.3:+82098865 | MS.gene97787:CDS |
| CTTCTATTACTTGCGTCAGC+TGG | 0.475903 | 7.3:+82098769 | MS.gene97787:CDS |
| AATGTGTTGAGTGAAGAAAA+TGG | 0.482889 | 7.3:+82096404 | MS.gene97787:CDS |
| AAGCAAAAGGCATTAACATC+TGG | 0.483690 | 7.3:-82096551 | None:intergenic |
| TCATTGATGCATTGAAGAGA+GGG | 0.487510 | 7.3:+82096369 | MS.gene97787:CDS |
| CCTTCTACGTCACATTTGGA+TGG | 0.492156 | 7.3:+82096497 | MS.gene97787:CDS |
| TATAAGAATGTAAGAGGAGA+TGG | 0.493496 | 7.3:+82098946 | MS.gene97787:CDS |
| GGTAAGATATTTGTTTACAC+TGG | 0.506285 | 7.3:+82096581 | MS.gene97787:CDS |
| GCTTGCTCAAGCTCCGGTAA+TGG | 0.511583 | 7.3:+82098906 | MS.gene97787:CDS |
| GTCAGCTGGCTATGATCCTC+GGG | 0.514529 | 7.3:+82098783 | MS.gene97787:CDS |
| ATGTGTTGAGTGAAGAAAAT+GGG | 0.514675 | 7.3:+82096405 | MS.gene97787:CDS |
| TTGAAATGATGAAGGTAGAA+TGG | 0.519713 | 7.3:+82096282 | None:intergenic |
| CTTACCACCAGGTAAGCAAA+AGG | 0.529017 | 7.3:-82096564 | None:intergenic |
| TGATGAAGGTAGAATGGAAG+GGG | 0.533339 | 7.3:+82096288 | None:intergenic |
| AATTAGTGCATTGGCTAACA+AGG | 0.538964 | 7.3:+82096436 | MS.gene97787:CDS |
| AGGGGATGACAAAGAGACTC+TGG | 0.539652 | 7.3:+82097072 | MS.gene97787:CDS |
| GTGGCCAGACACGGTGCTGA+GGG | 0.543835 | 7.3:+82097053 | MS.gene97787:CDS |
| AATGATGAAGGTAGAATGGA+AGG | 0.546787 | 7.3:+82096286 | None:intergenic |
| CTGAAATTGTCAACACATTG+TGG | 0.549625 | 7.3:+82097135 | MS.gene97787:CDS |
| AGTGCATTGGCTAACAAGGA+AGG | 0.550880 | 7.3:+82096440 | MS.gene97787:CDS |
| ATCATTGATGCATTGAAGAG+AGG | 0.553728 | 7.3:+82096368 | MS.gene97787:CDS |
| AGAATTGCTTGCTCAAGCTC+CGG | 0.558964 | 7.3:+82098900 | MS.gene97787:CDS |
| GAGGGAAACAATTAGTGCAT+TGG | 0.562323 | 7.3:+82096427 | MS.gene97787:CDS |
| ACAATTTCAGACGGGACGAA+TGG | 0.563720 | 7.3:-82097122 | None:intergenic |
| ACGTAGAAGGTTGCAACCCT+CGG | 0.577323 | 7.3:-82096484 | None:intergenic |
| TCGAACTTCTCGTAGACTGT+AGG | 0.579328 | 7.3:-82098811 | None:intergenic |
| GGGCATGTTGTGGCCAGACA+CGG | 0.584588 | 7.3:+82097044 | MS.gene97787:CDS |
| TAAGGCTACCTTATTCCAGA+CGG | 0.602104 | 7.3:+82097168 | MS.gene97787:CDS |
| TCCTAACTCTCCAACTGTCA+GGG | 0.603101 | 7.3:-82096331 | None:intergenic |
| ATGATGAAGGTAGAATGGAA+GGG | 0.605306 | 7.3:+82096287 | None:intergenic |
| TGTGGCCAGACACGGTGCTG+AGG | 0.607472 | 7.3:+82097052 | MS.gene97787:CDS |
| ATGTGTTGACAATTTCAGAC+GGG | 0.607906 | 7.3:-82097130 | None:intergenic |
| CTGCAATACACCCTGACAGT+TGG | 0.614458 | 7.3:+82096321 | MS.gene97787:CDS |
| TTAAAGGGAATTGGTACCGA+GGG | 0.615408 | 7.3:+82096468 | MS.gene97787:CDS |
| AAATTAGGTTGGGCATGTTG+TGG | 0.625700 | 7.3:+82097034 | MS.gene97787:intron |
| AATGTAAGAGGAGATGGACA+AGG | 0.627845 | 7.3:+82098952 | MS.gene97787:CDS |
| GTGCATTGGCTAACAAGGAA+GGG | 0.633725 | 7.3:+82096441 | MS.gene97787:CDS |
| AATGTGTTGACAATTTCAGA+CGG | 0.642175 | 7.3:-82097131 | None:intergenic |
| GAAATGGAAGCAGATTACAT+TGG | 0.652083 | 7.3:+82098745 | MS.gene97787:CDS |
| GAGAAGTTCGATAAATTGAA+CGG | 0.652852 | 7.3:+82098823 | MS.gene97787:CDS |
| TGGCCAGACACGGTGCTGAG+GGG | 0.671392 | 7.3:+82097054 | MS.gene97787:CDS |
| TAAACAAATATCTTACCACC+AGG | 0.680388 | 7.3:-82096575 | None:intergenic |
| GTTAAAGGGAATTGGTACCG+AGG | 0.701685 | 7.3:+82096467 | MS.gene97787:CDS |
| TGTTGAGTGAAGAAAATGGG+AGG | 0.712281 | 7.3:+82096408 | MS.gene97787:CDS |
| TAGACTGTAGGTGCAACCCG+AGG | 0.719865 | 7.3:-82098799 | None:intergenic |
| GTTGAGTGAAGAAAATGGGA+GGG | 0.728798 | 7.3:+82096409 | MS.gene97787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATAAGAAGATTAAA+AGG | - | chr7.3:82098320-82098339 | None:intergenic | 10.0% |
| !! | AAAATTAAGATCTTAAATTG+AGG | + | chr7.3:82097440-82097459 | MS.gene97787:intron | 15.0% |
| !!! | ATCTATATGTATATTTTTCA+TGG | + | chr7.3:82098673-82098692 | MS.gene97787:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | - | chr7.3:82096783-82096802 | None:intergenic | 15.0% |
| !! | ACTATATATAAGAATGTAAG+AGG | + | chr7.3:82098940-82098959 | MS.gene97787:CDS | 20.0% |
| !!! | AAATTCATTCACAATTTTTC+AGG | + | chr7.3:82098719-82098738 | MS.gene97787:intron | 20.0% |
| !!! | ACAATACTTTTATATTGAAC+TGG | + | chr7.3:82098588-82098607 | MS.gene97787:intron | 20.0% |
| !!! | CATTTCATTGATTAATACAT+AGG | + | chr7.3:82097265-82097284 | MS.gene97787:intron | 20.0% |
| !!! | GATAATCTTTATTTGTAGAA+TGG | - | chr7.3:82098849-82098868 | None:intergenic | 20.0% |
| !!! | TTTTATTCGTTTAACTCATT+AGG | + | chr7.3:82096662-82096681 | MS.gene97787:intron | 20.0% |
| ! | AAAGAAAACATGTTAATGCT+TGG | + | chr7.3:82098140-82098159 | MS.gene97787:intron | 25.0% |
| ! | AATTCAATGTAATCATGTGT+CGG | + | chr7.3:82096806-82096825 | MS.gene97787:intron | 25.0% |
| ! | AGAACAACACAAATTTGAAT+TGG | - | chr7.3:82097224-82097243 | None:intergenic | 25.0% |
| ! | AGTTCATTGTGAAAAGAATT+CGG | + | chr7.3:82097917-82097936 | MS.gene97787:intron | 25.0% |
| ! | ATATTAAATGTGTACACATC+AGG | + | chr7.3:82098226-82098245 | MS.gene97787:intron | 25.0% |
| ! | GATGCAATATGATTATAGAA+AGG | + | chr7.3:82098636-82098655 | MS.gene97787:intron | 25.0% |
| ! | GTTATAAAGAGAATTAACGA+AGG | - | chr7.3:82097202-82097221 | None:intergenic | 25.0% |
| ! | TATAATCATATTGCATCACA+AGG | - | chr7.3:82098633-82098652 | None:intergenic | 25.0% |
| ! | TATTAAATGTGTACACATCA+GGG | + | chr7.3:82098227-82098246 | MS.gene97787:intron | 25.0% |
| ! | TCAAATATTGTGTGGTATAT+TGG | + | chr7.3:82098509-82098528 | MS.gene97787:intron | 25.0% |
| ! | TCTTTCTCTTAAAGTTAATG+CGG | - | chr7.3:82097805-82097824 | None:intergenic | 25.0% |
| ! | TGTTTATGGATAACAAGTTA+CGG | - | chr7.3:82097769-82097788 | None:intergenic | 25.0% |
| ! | TTTCTATAAGCATGGAATTA+AGG | - | chr7.3:82098063-82098082 | None:intergenic | 25.0% |
| AACCAATTGGATACCAATAT+CGG | + | chr7.3:82097728-82097747 | MS.gene97787:intron | 30.0% | |
| AAGCTCAAAAGAGTTAGATT+TGG | - | chr7.3:82097012-82097031 | None:intergenic | 30.0% | |
| AAGTACAAGCTCAAACTTAA+TGG | + | chr7.3:82097402-82097421 | MS.gene97787:intron | 30.0% | |
| AATGTGTTGAGTGAAGAAAA+TGG | + | chr7.3:82096404-82096423 | MS.gene97787:CDS | 30.0% | |
| ACACAATATCATGAAGCTAA+AGG | - | chr7.3:82098396-82098415 | None:intergenic | 30.0% | |
| AGCTCAAAAGAGTTAGATTT+GGG | - | chr7.3:82097011-82097030 | None:intergenic | 30.0% | |
| ATGTGTTGAGTGAAGAAAAT+GGG | + | chr7.3:82096405-82096424 | MS.gene97787:CDS | 30.0% | |
| ATTATGCATGTGTTTCTTGT+TGG | + | chr7.3:82098271-82098290 | MS.gene97787:intron | 30.0% | |
| CACAATATCATGAAGCTAAA+GGG | - | chr7.3:82098395-82098414 | None:intergenic | 30.0% | |
| CTCAAGAATAATACAGGTAT+GGG | + | chr7.3:82097585-82097604 | MS.gene97787:intron | 30.0% | |
| GAACTTAAAATAGACACTGA+AGG | - | chr7.3:82097902-82097921 | None:intergenic | 30.0% | |
| GAGAAGTTCGATAAATTGAA+CGG | + | chr7.3:82098823-82098842 | MS.gene97787:CDS | 30.0% | |
| GAGACTAATATTATACGATC+AGG | + | chr7.3:82098539-82098558 | MS.gene97787:intron | 30.0% | |
| GATTATAGAAAGGTGAATGA+TGG | + | chr7.3:82098646-82098665 | MS.gene97787:intron | 30.0% | |
| GGTAAGATATTTGTTTACAC+TGG | + | chr7.3:82096581-82096600 | MS.gene97787:CDS | 30.0% | |
| GTAAGCTATTTATCCAAACA+TGG | + | chr7.3:82096952-82096971 | MS.gene97787:intron | 30.0% | |
| TAAACAAATATCTTACCACC+AGG | - | chr7.3:82096578-82096597 | None:intergenic | 30.0% | |
| TAATTGCGATATCAACCAAT+TGG | + | chr7.3:82097715-82097734 | MS.gene97787:intron | 30.0% | |
| TATAAGAATGTAAGAGGAGA+TGG | + | chr7.3:82098946-82098965 | MS.gene97787:CDS | 30.0% | |
| TATGTTAGACAAGTTAGAAC+AGG | + | chr7.3:82097293-82097312 | MS.gene97787:intron | 30.0% | |
| TCTCAAATTATTAACGGTGT+CGG | - | chr7.3:82096777-82096796 | None:intergenic | 30.0% | |
| TGAGACTGTTTGAGAAATTA+TGG | + | chr7.3:82096909-82096928 | MS.gene97787:intron | 30.0% | |
| TGATTGCATTTCTATAAGCA+TGG | - | chr7.3:82098071-82098090 | None:intergenic | 30.0% | |
| TGTGTGGTATATTGGAATTT+GGG | + | chr7.3:82098517-82098536 | MS.gene97787:intron | 30.0% | |
| TTGAGCTTGAAAATTAGGTT+GGG | + | chr7.3:82097024-82097043 | MS.gene97787:intron | 30.0% | |
| TTGTGTGGTATATTGGAATT+TGG | + | chr7.3:82098516-82098535 | MS.gene97787:intron | 30.0% | |
| TTTGAGCTTGAAAATTAGGT+TGG | + | chr7.3:82097023-82097042 | MS.gene97787:intron | 30.0% | |
| ! | AATGCTTGGATTTTACAGAA+TGG | + | chr7.3:82098154-82098173 | MS.gene97787:intron | 30.0% |
| ! | AATGTGTTGACAATTTCAGA+CGG | - | chr7.3:82097134-82097153 | None:intergenic | 30.0% |
| ! | ATGCTTGGATTTTACAGAAT+GGG | + | chr7.3:82098155-82098174 | MS.gene97787:intron | 30.0% |
| ! | CTCTTTTGAGCTTGAAAATT+AGG | + | chr7.3:82097019-82097038 | MS.gene97787:intron | 30.0% |
| ! | GCTCTAGATTTACATGTTTA+TGG | - | chr7.3:82097783-82097802 | None:intergenic | 30.0% |
| !! | ACATTTGGATGGATTGAATT+GGG | + | chr7.3:82096508-82096527 | MS.gene97787:CDS | 30.0% |
| !! | ATTTTGGTAGTAGGCAATTA+TGG | - | chr7.3:82097654-82097673 | None:intergenic | 30.0% |
| !! | TTAACTCATTAGGCTTTGTT+TGG | + | chr7.3:82096672-82096691 | MS.gene97787:intron | 30.0% |
| !! | TTGAATGGAATTTTGGTAGT+AGG | - | chr7.3:82097663-82097682 | None:intergenic | 30.0% |
| !!! | ACAATTTTTCAGGATGGAAA+TGG | + | chr7.3:82098729-82098748 | MS.gene97787:intron | 30.0% |
| !!! | TCATTCACAATTTTTCAGGA+TGG | + | chr7.3:82098723-82098742 | MS.gene97787:intron | 30.0% |
| AACAAGGAAGGGAAAGTTAA+AGG | + | chr7.3:82096452-82096471 | MS.gene97787:CDS | 35.0% | |
| AAGGGAAAGTTAAAGGGAAT+TGG | + | chr7.3:82096459-82096478 | MS.gene97787:CDS | 35.0% | |
| ACAAGGAAGGGAAAGTTAAA+GGG | + | chr7.3:82096453-82096472 | MS.gene97787:CDS | 35.0% | |
| AGAAGATTAAAAGGAAACCG+TGG | - | chr7.3:82098311-82098330 | None:intergenic | 35.0% | |
| AGCAACTATTATTGGACATG+AGG | + | chr7.3:82096633-82096652 | MS.gene97787:intron | 35.0% | |
| ATCATTGATGCATTGAAGAG+AGG | + | chr7.3:82096368-82096387 | MS.gene97787:CDS | 35.0% | |
| CATGGACTTCAAATATTGTG+TGG | + | chr7.3:82098501-82098520 | MS.gene97787:intron | 35.0% | |
| CCATACCTGTATTATTCTTG+AGG | - | chr7.3:82097587-82097606 | None:intergenic | 35.0% | |
| CCTCAAGAATAATACAGGTA+TGG | + | chr7.3:82097584-82097603 | MS.gene97787:intron | 35.0% | |
| CTGAAATTGTCAACACATTG+TGG | + | chr7.3:82097135-82097154 | MS.gene97787:CDS | 35.0% | |
| GAAATGGAAGCAGATTACAT+TGG | + | chr7.3:82098745-82098764 | MS.gene97787:CDS | 35.0% | |
| GAAGATTAAAAGGAAACCGT+GGG | - | chr7.3:82098310-82098329 | None:intergenic | 35.0% | |
| GCAAAAACAATGACCATGTT+TGG | - | chr7.3:82096968-82096987 | None:intergenic | 35.0% | |
| GCAGAGATAGCAACTATTAT+TGG | + | chr7.3:82096625-82096644 | MS.gene97787:intron | 35.0% | |
| GTAGTAGGCAATTATGGATA+GGG | - | chr7.3:82097648-82097667 | None:intergenic | 35.0% | |
| TAGTAGGCAATTATGGATAG+GGG | - | chr7.3:82097647-82097666 | None:intergenic | 35.0% | |
| TCATTGATGCATTGAAGAGA+GGG | + | chr7.3:82096369-82096388 | MS.gene97787:CDS | 35.0% | |
| TCCTAGTTATGGTAGAAAGT+TGG | - | chr7.3:82097843-82097862 | None:intergenic | 35.0% | |
| TGAGCTATGAAGCATGTATA+CGG | + | chr7.3:82096734-82096753 | MS.gene97787:intron | 35.0% | |
| TTCATGATATTGTGTGTCTG+TGG | + | chr7.3:82098401-82098420 | MS.gene97787:intron | 35.0% | |
| TTTGACTATCTAACCAACCA+TGG | + | chr7.3:82098457-82098476 | MS.gene97787:intron | 35.0% | |
| ! | AATTTGGAGGACAAGTTGAA+GGG | - | chr7.3:82097874-82097893 | None:intergenic | 35.0% |
| ! | ATGTGTTGACAATTTCAGAC+GGG | - | chr7.3:82097133-82097152 | None:intergenic | 35.0% |
| ! | ATTGAATTGGGAGATTTTGG+TGG | + | chr7.3:82096520-82096539 | MS.gene97787:CDS | 35.0% |
| ! | CATTGTGGTCTGTTTTCTTA+AGG | + | chr7.3:82097150-82097169 | MS.gene97787:CDS | 35.0% |
| ! | TGGATTGAATTGGGAGATTT+TGG | + | chr7.3:82096517-82096536 | MS.gene97787:CDS | 35.0% |
| !! | AAGCAAAAGGCATTAACATC+TGG | - | chr7.3:82096554-82096573 | None:intergenic | 35.0% |
| !! | AATTAGTGCATTGGCTAACA+AGG | + | chr7.3:82096436-82096455 | MS.gene97787:CDS | 35.0% |
| !! | AGAACATTACTTTTCCTCAG+AGG | - | chr7.3:82097479-82097498 | None:intergenic | 35.0% |
| !! | CACATTTGGATGGATTGAAT+TGG | + | chr7.3:82096507-82096526 | MS.gene97787:CDS | 35.0% |
| AAAGAAGCCATATCAGACCA+TGG | - | chr7.3:82098477-82098496 | None:intergenic | 40.0% | |
| AATATCGGCACATTTACCTC+TGG | + | chr7.3:82097743-82097762 | MS.gene97787:intron | 40.0% | |
| AATGTAAGAGGAGATGGACA+AGG | + | chr7.3:82098952-82098971 | MS.gene97787:CDS | 40.0% | |
| ACTATGCGCTTTGTATTTCC+CGG | + | chr7.3:82097523-82097542 | MS.gene97787:intron | 40.0% | |
| ACTGAAGGCAATGAATTTGG+AGG | - | chr7.3:82097887-82097906 | None:intergenic | 40.0% | |
| AGTAGGCAATTATGGATAGG+GGG | - | chr7.3:82097646-82097665 | None:intergenic | 40.0% | |
| AGTTGGAGAGTTAGGATGAT+AGG | + | chr7.3:82096338-82096357 | MS.gene97787:CDS | 40.0% | |
| ATGAAGCATGTATACGGACA+CGG | + | chr7.3:82096740-82096759 | MS.gene97787:intron | 40.0% | |
| ATGCATGTGTTTCTTGTTGG+AGG | + | chr7.3:82098274-82098293 | MS.gene97787:intron | 40.0% | |
| ATGGTCTGATATGGCTTCTT+TGG | + | chr7.3:82098476-82098495 | MS.gene97787:intron | 40.0% | |
| CCAGTCCTCAAGAATAATAC+AGG | + | chr7.3:82097579-82097598 | MS.gene97787:intron | 40.0% | |
| CCTGTATTATTCTTGAGGAC+TGG | - | chr7.3:82097582-82097601 | None:intergenic | 40.0% | |
| CGAATGGATAAACGATCAAC+TGG | - | chr7.3:82097109-82097128 | None:intergenic | 40.0% | |
| GACACTGAAGGCAATGAATT+TGG | - | chr7.3:82097890-82097909 | None:intergenic | 40.0% | |
| GAGGGAAACAATTAGTGCAT+TGG | + | chr7.3:82096427-82096446 | MS.gene97787:CDS | 40.0% | |
| GCCAACTTTCTACCATAACT+AGG | + | chr7.3:82097839-82097858 | MS.gene97787:intron | 40.0% | |
| GGTAGTAGGCAATTATGGAT+AGG | - | chr7.3:82097649-82097668 | None:intergenic | 40.0% | |
| GTAAGAGCTTCTTCCATTAC+CGG | - | chr7.3:82098922-82098941 | None:intergenic | 40.0% | |
| GTCGCCTTTGTGTTAGATTA+GGG | - | chr7.3:82097690-82097709 | None:intergenic | 40.0% | |
| GTTGAGTGAAGAAAATGGGA+GGG | + | chr7.3:82096409-82096428 | MS.gene97787:CDS | 40.0% | |
| GTTGGAGAGTTAGGATGATA+GGG | + | chr7.3:82096339-82096358 | MS.gene97787:CDS | 40.0% | |
| TAACCAACCATGGTCTGATA+TGG | + | chr7.3:82098467-82098486 | MS.gene97787:intron | 40.0% | |
| TAAGGCTACCTTATTCCAGA+CGG | + | chr7.3:82097168-82097187 | MS.gene97787:CDS | 40.0% | |
| TGCATGTGTTTCTTGTTGGA+GGG | + | chr7.3:82098275-82098294 | MS.gene97787:intron | 40.0% | |
| TGCCGATATTGGTATCCAAT+TGG | - | chr7.3:82097733-82097752 | None:intergenic | 40.0% | |
| TGTCGCCTTTGTGTTAGATT+AGG | - | chr7.3:82097691-82097710 | None:intergenic | 40.0% | |
| TGTTGAGTGAAGAAAATGGG+AGG | + | chr7.3:82096408-82096427 | MS.gene97787:CDS | 40.0% | |
| TTAGATTAGGGTGGCTTGAA+TGG | - | chr7.3:82097678-82097697 | None:intergenic | 40.0% | |
| TTCTGCATGTTAGTGTGTAC+TGG | + | chr7.3:82098183-82098202 | MS.gene97787:intron | 40.0% | |
| ! | AATCGTTACCGTCTGGAATA+AGG | - | chr7.3:82097179-82097198 | None:intergenic | 40.0% |
| ! | AGAGGTAAATGTGCCGATAT+TGG | - | chr7.3:82097744-82097763 | None:intergenic | 40.0% |
| ! | GAATTTGGAGGACAAGTTGA+AGG | - | chr7.3:82097875-82097894 | None:intergenic | 40.0% |
| ! | GTTAATGCCTTTTGCTTACC+TGG | + | chr7.3:82096557-82096576 | MS.gene97787:CDS | 40.0% |
| ! | TTAAAGGGAATTGGTACCGA+GGG | + | chr7.3:82096468-82096487 | MS.gene97787:CDS | 40.0% |
| !! | AAATTAGGTTGGGCATGTTG+TGG | + | chr7.3:82097034-82097053 | MS.gene97787:intron | 40.0% |
| !!! | TCTGCTCTCTTTTTTCCAGA+TGG | - | chr7.3:82098883-82098902 | None:intergenic | 40.0% |
| AAGCCATATCAGACCATGGT+TGG | - | chr7.3:82098473-82098492 | None:intergenic | 45.0% | |
| ACAATTTCAGACGGGACGAA+TGG | - | chr7.3:82097125-82097144 | None:intergenic | 45.0% | |
| AGAATTGCTTGCTCAAGCTC+CGG | + | chr7.3:82098900-82098919 | MS.gene97787:CDS | 45.0% | |
| AGCAGGAAGTGAGAGATTAC+CGG | - | chr7.3:82097545-82097564 | None:intergenic | 45.0% | |
| ATCCTAACTCTCCAACTGTC+AGG | - | chr7.3:82096335-82096354 | None:intergenic | 45.0% | |
| CCATCCAAATGTGACGTAGA+AGG | - | chr7.3:82096500-82096519 | None:intergenic | 45.0% | |
| CCTTCTACGTCACATTTGGA+TGG | + | chr7.3:82096497-82096516 | MS.gene97787:CDS | 45.0% | |
| CTTACCACCAGGTAAGCAAA+AGG | - | chr7.3:82096567-82096586 | None:intergenic | 45.0% | |
| CTTCTATTACTTGCGTCAGC+TGG | + | chr7.3:82098769-82098788 | MS.gene97787:CDS | 45.0% | |
| GAGGACTGGACTATTCTTCT+AGG | - | chr7.3:82097568-82097587 | None:intergenic | 45.0% | |
| GATTATGCGTGTCCCAATGT+CGG | - | chr7.3:82096863-82096882 | None:intergenic | 45.0% | |
| GCAACCTTCTACGTCACATT+TGG | + | chr7.3:82096493-82096512 | MS.gene97787:CDS | 45.0% | |
| GCCACCCTAATCTAACACAA+AGG | + | chr7.3:82097683-82097702 | MS.gene97787:intron | 45.0% | |
| GCCTTTGTGTTAGATTAGGG+TGG | - | chr7.3:82097687-82097706 | None:intergenic | 45.0% | |
| GGGAGTTACAGTCCTAGTTA+TGG | - | chr7.3:82097854-82097873 | None:intergenic | 45.0% | |
| GTTAAAGGGAATTGGTACCG+AGG | + | chr7.3:82096467-82096486 | MS.gene97787:CDS | 45.0% | |
| TACAAAGCGCATAGTCAACG+AGG | - | chr7.3:82097518-82097537 | None:intergenic | 45.0% | |
| TATCTCTCGACTCATCCATC+TGG | + | chr7.3:82098865-82098884 | MS.gene97787:CDS | 45.0% | |
| TCCTAACAGTCTGAGTGCTA+AGG | + | chr7.3:82097949-82097968 | MS.gene97787:intron | 45.0% | |
| TCCTAACTCTCCAACTGTCA+GGG | - | chr7.3:82096334-82096353 | None:intergenic | 45.0% | |
| TCCTTAGCACTCAGACTGTT+AGG | - | chr7.3:82097953-82097972 | None:intergenic | 45.0% | |
| TCGAACTTCTCGTAGACTGT+AGG | - | chr7.3:82098814-82098833 | None:intergenic | 45.0% | |
| TGTCGTAACGGTATCAGACA+TGG | + | chr7.3:82096829-82096848 | MS.gene97787:intron | 45.0% | |
| ! | AATGCCTTTTGCTTACCTGG+TGG | + | chr7.3:82096560-82096579 | MS.gene97787:CDS | 45.0% |
| ! | ACTTTTCCTCAGAGGAGCTT+AGG | - | chr7.3:82097471-82097490 | None:intergenic | 45.0% |
| ! | GGGTGGCTTGAATGGAATTT+TGG | - | chr7.3:82097670-82097689 | None:intergenic | 45.0% |
| ! | TGGACTATTCTTCTAGGAGC+AGG | - | chr7.3:82097562-82097581 | None:intergenic | 45.0% |
| !! | AGTGCATTGGCTAACAAGGA+AGG | + | chr7.3:82096440-82096459 | MS.gene97787:CDS | 45.0% |
| !! | ATCATGTGTCGGTGTCGTAA+CGG | + | chr7.3:82096817-82096836 | MS.gene97787:intron | 45.0% |
| !! | GATATGGCTTCTTTGGAGCA+TGG | + | chr7.3:82098483-82098502 | MS.gene97787:intron | 45.0% |
| !! | GTGCATTGGCTAACAAGGAA+GGG | + | chr7.3:82096441-82096460 | MS.gene97787:CDS | 45.0% |
| AAAGCGCATAGTCAACGAGG+TGG | - | chr7.3:82097515-82097534 | None:intergenic | 50.0% | |
| ACCCTGACAGTTGGAGAGTT+AGG | + | chr7.3:82096330-82096349 | MS.gene97787:CDS | 50.0% | |
| ACGAAGGAATCGTTACCGTC+TGG | - | chr7.3:82097186-82097205 | None:intergenic | 50.0% | |
| ACGTAGAAGGTTGCAACCCT+CGG | - | chr7.3:82096487-82096506 | None:intergenic | 50.0% | |
| AGGGGATGACAAAGAGACTC+TGG | + | chr7.3:82097072-82097091 | MS.gene97787:CDS | 50.0% | |
| ATGGATGCGTGTCCGACATT+GGG | + | chr7.3:82096848-82096867 | MS.gene97787:intron | 50.0% | |
| ATTGGGACACGCATAATCCG+AGG | + | chr7.3:82096865-82096884 | MS.gene97787:intron | 50.0% | |
| CAACTGTCAGGGTGTATTGC+AGG | - | chr7.3:82096323-82096342 | None:intergenic | 50.0% | |
| CTGCAATACACCCTGACAGT+TGG | + | chr7.3:82096321-82096340 | MS.gene97787:CDS | 50.0% | |
| GCAGGAAGTGAGAGATTACC+GGG | - | chr7.3:82097544-82097563 | None:intergenic | 50.0% | |
| GGATAACAAGTTACGGCCAG+AGG | - | chr7.3:82097762-82097781 | None:intergenic | 50.0% | |
| TATGAAGCACGCACACTCCT+CGG | - | chr7.3:82096885-82096904 | None:intergenic | 50.0% | |
| ! | TTTCTTGTTGGAGGGTGCGA+TGG | + | chr7.3:82098283-82098302 | MS.gene97787:intron | 50.0% |
| !! | GGGAGATTTTGGTGGTCGAT+GGG | + | chr7.3:82096528-82096547 | MS.gene97787:CDS | 50.0% |
| !! | TGGGAGATTTTGGTGGTCGA+TGG | + | chr7.3:82096527-82096546 | MS.gene97787:CDS | 50.0% |
| CATGGATGCGTGTCCGACAT+TGG | + | chr7.3:82096847-82096866 | MS.gene97787:intron | 55.0% | |
| CGTCAGCTGGCTATGATCCT+CGG | + | chr7.3:82098782-82098801 | MS.gene97787:CDS | 55.0% | |
| GCTTGCTCAAGCTCCGGTAA+TGG | + | chr7.3:82098906-82098925 | MS.gene97787:CDS | 55.0% | |
| GTAGAGCCTAAGCTCCTCTG+AGG | + | chr7.3:82097462-82097481 | MS.gene97787:intron | 55.0% | |
| GTCAGCTGGCTATGATCCTC+GGG | + | chr7.3:82098783-82098802 | MS.gene97787:CDS | 55.0% | |
| TAGACTGTAGGTGCAACCCG+AGG | - | chr7.3:82098802-82098821 | None:intergenic | 55.0% | |
| GGGCATGTTGTGGCCAGACA+CGG | + | chr7.3:82097044-82097063 | MS.gene97787:CDS | 60.0% | |
| CATCCCCTCAGCACCGTGTC+TGG | - | chr7.3:82097060-82097079 | None:intergenic | 65.0% | |
| ! | GTGGCCAGACACGGTGCTGA+GGG | + | chr7.3:82097053-82097072 | MS.gene97787:CDS | 65.0% |
| ! | TGGAGGGTGCGATGGTCCCA+CGG | + | chr7.3:82098291-82098310 | MS.gene97787:intron | 65.0% |
| ! | TGGCCAGACACGGTGCTGAG+GGG | + | chr7.3:82097054-82097073 | MS.gene97787:CDS | 65.0% |
| ! | TGTGGCCAGACACGGTGCTG+AGG | + | chr7.3:82097052-82097071 | MS.gene97787:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 82096290 | 82099026 | 82096290 | ID=MS.gene97787 |
| chr7.3 | mRNA | 82096290 | 82099026 | 82096290 | ID=MS.gene97787.t1;Parent=MS.gene97787 |
| chr7.3 | exon | 82096290 | 82096619 | 82096290 | ID=MS.gene97787.t1.exon1;Parent=MS.gene97787.t1 |
| chr7.3 | CDS | 82096290 | 82096619 | 82096290 | ID=cds.MS.gene97787.t1;Parent=MS.gene97787.t1 |
| chr7.3 | exon | 82097041 | 82097189 | 82097041 | ID=MS.gene97787.t1.exon2;Parent=MS.gene97787.t1 |
| chr7.3 | CDS | 82097041 | 82097189 | 82097041 | ID=cds.MS.gene97787.t1;Parent=MS.gene97787.t1 |
| chr7.3 | exon | 82098741 | 82099026 | 82098741 | ID=MS.gene97787.t1.exon3;Parent=MS.gene97787.t1 |
| chr7.3 | CDS | 82098741 | 82099026 | 82098741 | ID=cds.MS.gene97787.t1;Parent=MS.gene97787.t1 |
| Gene Sequence |
| Protein sequence |
