AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene97987

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97987.t1 MTR_2g048340 94.144 666 31 2 1 664 1 660 0.0 1236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene97987.t1 AT5G58130 49.356 233 88 5 3 233 2 206 6.01e-61 217

Find 142 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATCCTTTCAAGTTCT+TGG 0.115429 2.3:+42680694 None:intergenic
ACTGAACCAGAACATGATTT+TGG 0.178047 2.3:-42679814 MS.gene97987:CDS
GGTTCTTTAGCCGTTTGTTC+TGG 0.189946 2.3:+42679256 None:intergenic
GAGGACCAACTTTAATATTC+TGG 0.211960 2.3:+42681078 None:intergenic
TTCATTTATCACTTGTTTAT+TGG 0.239670 2.3:+42679420 None:intergenic
AGAATATTCGTCGGAGGATT+AGG 0.284833 2.3:-42683999 MS.gene97987:CDS
TCGAAAACTGTTCGAATCAT+TGG 0.291105 2.3:-42683952 MS.gene97987:CDS
ATTGCTTTCACTTTCCGATT+TGG 0.294913 2.3:+42679915 None:intergenic
CATGATCCTTTCAAGTTCTT+GGG 0.298802 2.3:+42680695 None:intergenic
TTGCTTTCACTTTCCGATTT+GGG 0.304504 2.3:+42679916 None:intergenic
GTCACTGATGGCTTCAACTT+AGG 0.323626 2.3:-42679163 MS.gene97987:CDS
TTCGACTCATAAGGAGGATT+TGG 0.331025 2.3:-42682895 MS.gene97987:CDS
CGATCTGCAAATGTTGAAAT+AGG 0.332142 2.3:-42679046 MS.gene97987:CDS
ATGTTGGCATTGCAGTATAA+TGG 0.333790 2.3:-42683038 MS.gene97987:intron
GGAACCGGCAGGGTACAAAA+TGG 0.340357 2.3:+42679234 None:intergenic
TGGTACCTTACTGAAAAGTT+TGG 0.345165 2.3:+42683845 None:intergenic
TAACGAACCGTTCTTAATCT+TGG 0.345426 2.3:+42682807 None:intergenic
CTTCTAGATGGGCTGGGATC+TGG 0.347707 2.3:-42679847 MS.gene97987:CDS
CATGGTGGCAAAAGAAATCT+TGG 0.355436 2.3:-42679345 MS.gene97987:CDS
TCTACAAAGCGTCTTGCATT+AGG 0.359623 2.3:+42682861 None:intergenic
TCGAATGTCATCGGTGGTTA+CGG 0.365656 2.3:+42683971 None:intergenic
GGGAGTCTGCCAAAGTTTCA+TGG 0.367925 2.3:-42679792 MS.gene97987:CDS
AAAAGCTGTGAAAGGCTAAA+TGG 0.376894 2.3:+42679295 None:intergenic
GTGCTGATTCTTTGAAAGAA+TGG 0.378404 2.3:-42679000 MS.gene97987:CDS
ACGATCAAGGTAATGCTCTT+TGG 0.378575 2.3:+42682977 None:intergenic
CAGATCCCAGCCCATCTAGA+AGG 0.381344 2.3:+42679848 None:intergenic
ATGAGTGGGGAAGCAGAAAT+TGG 0.383018 2.3:-42680954 MS.gene97987:CDS
CTCTTCTATCACTCTTGTAT+TGG 0.388942 2.3:+42679504 None:intergenic
ATATTGAGAGGCTTTGCATC+TGG 0.390081 2.3:+42682837 None:intergenic
TCACTGATGGCTTCAACTTA+GGG 0.397187 2.3:-42679162 MS.gene97987:CDS
TGTTATTCTCATTAGCCAAC+TGG 0.398795 2.3:+42679320 None:intergenic
TTCTTTGATCATTTGTGTAT+TGG 0.401907 2.3:+42679546 None:intergenic
AGGATAAGTTATCTATGAAT+GGG 0.402189 2.3:-42681001 MS.gene97987:CDS
GTTCTTTAGCCGTTTGTTCT+GGG 0.404623 2.3:+42679257 None:intergenic
AAAATGCAGACCCTTCTAGA+TGG 0.405551 2.3:-42679859 MS.gene97987:CDS
GTTTCTAACACCAAGCATCT+TGG 0.410072 2.3:-42680864 MS.gene97987:CDS
AAAGCTAAAGCCGCTGTTAG+TGG 0.410378 2.3:-42678974 MS.gene97987:CDS
GAGAAAATCACTTCCCAAAT+CGG 0.411171 2.3:-42679929 MS.gene97987:CDS
TCCATACCCTTCAGTGGAAC+TGG 0.413684 2.3:-42681119 MS.gene97987:CDS
GACTCCCCAAAATCATGTTC+TGG 0.414624 2.3:+42679808 None:intergenic
AAGGATAAGTTATCTATGAA+TGG 0.419930 2.3:-42681002 MS.gene97987:CDS
AACGAACCGTTCTTAATCTT+GGG 0.421343 2.3:+42682808 None:intergenic
CGAAAACTGTTCGAATCATT+GGG 0.430363 2.3:-42683951 MS.gene97987:CDS
TGTTGGCATTGCAGTATAAT+GGG 0.433137 2.3:-42683037 MS.gene97987:intron
TTTATCACTTGTTTATTGGT+AGG 0.435186 2.3:+42679424 None:intergenic
TCCAGTGAGTGCAAGCATAA+TGG 0.439320 2.3:-42679214 MS.gene97987:CDS
TCTATCACTCTTGTATTGGT+AGG 0.441895 2.3:+42679508 None:intergenic
CTTCTGAGACCATGAAACTT+TGG 0.442387 2.3:+42679783 None:intergenic
GCAGACCCTTCTAGATGGGC+TGG 0.447267 2.3:-42679854 MS.gene97987:CDS
ATGCTTGCACTCACTGGAAC+CGG 0.452300 2.3:+42679219 None:intergenic
AATCGGAAAGTGAAAGCAAT+GGG 0.455057 2.3:-42679912 MS.gene97987:CDS
TTCTTCTATCACCTGTGCAT+TGG 0.455540 2.3:+42679462 None:intergenic
TGAAAGGATCATGGAAAGTC+AGG 0.458480 2.3:-42680685 MS.gene97987:intron
GTAAGCGAGACTGCGACCTT+TGG 0.460541 2.3:+42683899 None:intergenic
TTCTGATGTTTCGACTCATA+AGG 0.462618 2.3:-42682904 MS.gene97987:CDS
TAACTGGCACAGGTGTTTCA+TGG 0.468662 2.3:-42679363 MS.gene97987:CDS
CTTACTGAAAAGTTTGGAAA+GGG 0.474134 2.3:+42683851 None:intergenic
TTGGTAGGTTGAGCTTCAGC+AGG 0.477986 2.3:+42679439 None:intergenic
ACCATTATGCTTGCACTCAC+TGG 0.478496 2.3:+42679213 None:intergenic
GTGCTTCTTTCCAAGATGCT+TGG 0.478695 2.3:+42680854 None:intergenic
ACATTTGCAGATCGTTCCCT+TGG 0.482594 2.3:+42679055 None:intergenic
TGTATTGGTAGGTTGAGATT+CGG 0.494596 2.3:+42679561 None:intergenic
AGTTTCATCGTTTGTAGAAG+AGG 0.495898 2.3:+42679645 None:intergenic
AAGTTATGCTGAGTTTCAGC+AGG 0.496289 2.3:+42679397 None:intergenic
GCTGATAAGAATATTGTTGA+TGG 0.496593 2.3:-42679190 MS.gene97987:CDS
TAGAATCAGCAAGGAAATCA+AGG 0.497334 2.3:+42683877 None:intergenic
AAACGCGGTGAGAAGAAGTA+AGG 0.497524 2.3:-42678938 None:intergenic
TATGAATGGGGAAACTGAAA+GGG 0.498569 2.3:-42680988 MS.gene97987:CDS
CTATGAATGGGGAAACTGAA+AGG 0.499445 2.3:-42680989 MS.gene97987:CDS
CATTAGTTTCCCAGAACAAA+CGG 0.500069 2.3:-42679266 MS.gene97987:CDS
TGGAGAGAACTTGTTGGTAA+AGG 0.503479 2.3:-42679754 MS.gene97987:CDS
TAAAACAAATATTGCGGAGG+AGG 0.509192 2.3:-42680004 MS.gene97987:CDS
ACCAGTTCCACTGAAGGGTA+TGG 0.509579 2.3:+42681118 None:intergenic
GAACCGGCAGGGTACAAAAT+GGG 0.513709 2.3:+42679235 None:intergenic
TTGATCATTTGTGTATTGGT+AGG 0.513749 2.3:+42679550 None:intergenic
TCTATCACCTGTGCATTGGT+AGG 0.514259 2.3:+42679466 None:intergenic
AGTTTCCAGAATATTAAAGT+TGG 0.515602 2.3:-42681083 MS.gene97987:CDS
CCAAGAACTTGAAAGGATCA+TGG 0.517434 2.3:-42680694 MS.gene97987:CDS
TGGAAAACTGAAACTTGAAA+AGG 0.522661 2.3:-42683000 MS.gene97987:CDS
AATGGGTGTGTGTGGAAAGG+TGG 0.524128 2.3:-42683020 MS.gene97987:CDS
CCGGCATGCTCACTATTCTC+TGG 0.537896 2.3:+42679130 None:intergenic
CAGACCCTTCTAGATGGGCT+GGG 0.539526 2.3:-42679853 MS.gene97987:CDS
TCTTCGTGGAGAGAACTTGT+TGG 0.539823 2.3:-42679760 MS.gene97987:CDS
TTGCACTCACTGGAACCGGC+AGG 0.540369 2.3:+42679223 None:intergenic
TGCTTACCAGTTCCACTGAA+GGG 0.542059 2.3:+42681113 None:intergenic
GGGAAAAGTTATCTATGAGT+GGG 0.542933 2.3:-42680968 MS.gene97987:CDS
AAATCATGTTCTGGTTCAGT+AGG 0.544746 2.3:+42679817 None:intergenic
TCATAAGGAGGATTTGGTAA+AGG 0.545638 2.3:-42682889 MS.gene97987:CDS
ACTGCGACCTTTGGTACGAA+TGG 0.551310 2.3:+42683908 None:intergenic
CCTTACTGAAAAGTTTGGAA+AGG 0.551504 2.3:+42683850 None:intergenic
CATGGTCTCAGAAGTCTTCG+TGG 0.551938 2.3:-42679774 MS.gene97987:CDS
ATCTCTGCCTACCAATGCAC+AGG 0.554099 2.3:-42679473 MS.gene97987:CDS
TGTTCTGGGAAACTAATGTC+AGG 0.556549 2.3:+42679271 None:intergenic
AGTGGGGAAGCAGAAATTGG+TGG 0.558375 2.3:-42680951 MS.gene97987:CDS
TTGGTAGGTTGAGATTCGGC+AGG 0.560339 2.3:+42679565 None:intergenic
CAGGGACCCAAGAACTTGAA+AGG 0.565422 2.3:-42680701 MS.gene97987:CDS
GTGCTTACCAGTTCCACTGA+AGG 0.566725 2.3:+42681112 None:intergenic
AGAAACTATATCATCAGTAC+CGG 0.567060 2.3:+42679111 None:intergenic
AAATGCAGACCCTTCTAGAT+GGG 0.570793 2.3:-42679858 MS.gene97987:CDS
GTTATTCTCATTAGCCAACT+GGG 0.572106 2.3:+42679321 None:intergenic
AAATCGTTGAAACAAGTCCA+AGG 0.574551 2.3:-42679072 MS.gene97987:CDS
GAAGATCAGCAAAACTCTGA+TGG 0.574919 2.3:-42679679 MS.gene97987:CDS
CTTGGGAAGTAAATATTGAG+AGG 0.582694 2.3:+42682825 None:intergenic
TGAGTCGAAACATCAGAAGC+TGG 0.586957 2.3:+42682909 None:intergenic
AGGGAAAAGTTATCTATGAG+TGG 0.590439 2.3:-42680969 MS.gene97987:CDS
TGCAGTATAATGGGTGTGTG+TGG 0.590559 2.3:-42683028 MS.gene97987:intron
TGCACTCACTGGAACCGGCA+GGG 0.590957 2.3:+42679224 None:intergenic
TTACTTCCCAAGATTAAGAA+CGG 0.593171 2.3:-42682814 MS.gene97987:intron
AAACGATGAAACTGTAGACA+TGG 0.593707 2.3:-42679635 MS.gene97987:CDS
CTCGAAACCATTCGTACCAA+AGG 0.593811 2.3:-42683915 MS.gene97987:CDS
AGATCCCAGCCCATCTAGAA+GGG 0.593994 2.3:+42679849 None:intergenic
AAAGAAATCTTGGACCCAGT+TGG 0.595933 2.3:-42679335 MS.gene97987:CDS
GTCCAATAAAACAAATATTG+CGG 0.596702 2.3:-42680010 MS.gene97987:CDS
GTTGATGGAACTGTCACTGA+TGG 0.598408 2.3:-42679175 MS.gene97987:CDS
TGTCAGGCAAAAGCTGTGAA+AGG 0.600136 2.3:+42679287 None:intergenic
GAGCAAGAGCGAATCTAGCA+AGG 0.605014 2.3:-42679959 MS.gene97987:CDS
TTGGTAGGCAGAGATTCAGC+AGG 0.605263 2.3:+42679481 None:intergenic
AGAGAACTTGTTGGTAAAGG+AGG 0.605841 2.3:-42679751 MS.gene97987:CDS
CACTGATGGCTTCAACTTAG+GGG 0.606207 2.3:-42679161 MS.gene97987:CDS
AGAGCAGTGAGAATATTCGT+CGG 0.618455 2.3:-42684008 MS.gene97987:CDS
AAATCGGAAAGTGAAAGCAA+TGG 0.618747 2.3:-42679913 MS.gene97987:CDS
GTAGATAGTGCAACAGATGA+TGG 0.626664 2.3:-42680786 MS.gene97987:CDS
GGATAAGTTATCTATGAATG+GGG 0.627287 2.3:-42681000 MS.gene97987:CDS
TGATGTTTCGACTCATAAGG+AGG 0.628597 2.3:-42682901 MS.gene97987:CDS
TCTTCAGCAGAATCAAACTT+CGG 0.629095 2.3:+42679697 None:intergenic
AAAGGGATTTAGAATCAGCA+AGG 0.632981 2.3:+42683868 None:intergenic
AAAACAAAGCAGCTTTGACA+GGG 0.636062 2.3:-42680719 MS.gene97987:CDS
AATCGTTGAAACAAGTCCAA+GGG 0.636458 2.3:-42679071 MS.gene97987:CDS
TATAATGGGTGTGTGTGGAA+AGG 0.637628 2.3:-42683023 MS.gene97987:CDS
GTTAAATCCATACCCTTCAG+TGG 0.639356 2.3:-42681125 MS.gene97987:CDS
AACGCGGTGAGAAGAAGTAA+GGG 0.644191 2.3:-42678937 None:intergenic
TTTGAGCGATCCACTAACAG+CGG 0.645694 2.3:+42678964 None:intergenic
GGAAAAGTTATCTATGAGTG+GGG 0.649648 2.3:-42680967 MS.gene97987:CDS
CAATAAAACAAATATTGCGG+AGG 0.654109 2.3:-42680007 MS.gene97987:CDS
GTTGCGTCTAGTACCCCTGT+AGG 0.660935 2.3:-42679889 MS.gene97987:CDS
CCAGAGAATAGTGAGCATGC+CGG 0.669733 2.3:-42679130 MS.gene97987:CDS
AAACTTCGGCAATATGAGAG+AGG 0.671206 2.3:+42679711 None:intergenic
GCAGTGAGAATATTCGTCGG+AGG 0.687502 2.3:-42684005 MS.gene97987:CDS
CTGGCACAGGTGTTTCATGG+TGG 0.696551 2.3:-42679360 MS.gene97987:CDS
GTCGAAACATCAGAAGCTGG+TGG 0.697024 2.3:+42682912 None:intergenic
ATCGGAAAGTGAAAGCAATG+GGG 0.734526 2.3:-42679911 MS.gene97987:CDS
GGATCGCTCAAAAGAAAACG+CGG 0.741601 2.3:-42678953 MS.gene97987:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATAGAATTAATTTA+AGG + chr2.3:42679887-42679906 None:intergenic 10.0%
!! AGAAAATAGAATTAATTTAA+GGG + chr2.3:42679886-42679905 None:intergenic 10.0%
!! ATAAAATAATAAAAATGTGA+CGG + chr2.3:42679450-42679469 None:intergenic 10.0%
!! AAATAAATAAATGAGTAAAC+AGG + chr2.3:42680200-42680219 None:intergenic 15.0%
!! AAATCTGTATAATTAAACAA+TGG + chr2.3:42681749-42681768 None:intergenic 15.0%
!! AATAAATTTACTTAATCTGA+AGG - chr2.3:42680927-42680946 MS.gene97987:CDS 15.0%
!! ATAAATTTACTTAATCTGAA+GGG - chr2.3:42680928-42680947 MS.gene97987:CDS 15.0%
!!! ATTTATTTTGTTATTCGTTA+CGG + chr2.3:42680914-42680933 None:intergenic 15.0%
!!! ATTTTTTTCTCAACAAATTA+AGG + chr2.3:42681417-42681436 None:intergenic 15.0%
!!! CATTTATTTTTTATTTGGAA+GGG - chr2.3:42682322-42682341 MS.gene97987:intron 15.0%
!!! CGTATCATTTATTTTTTATT+TGG - chr2.3:42682317-42682336 MS.gene97987:intron 15.0%
!!! TCATTTATTTTTTATTTGGA+AGG - chr2.3:42682321-42682340 MS.gene97987:intron 15.0%
!!! TTTTTTTCTCAACAAATTAA+GGG + chr2.3:42681416-42681435 None:intergenic 15.0%
!! CAAAATTTAGAAAATAGGAA+AGG - chr2.3:42680708-42680727 MS.gene97987:CDS 20.0%
!! GTACACAAAATTTAGAAAAT+AGG - chr2.3:42680703-42680722 MS.gene97987:CDS 20.0%
!! TAAATTTACTTAATCTGAAG+GGG - chr2.3:42680929-42680948 MS.gene97987:CDS 20.0%
!! TAGAATTAATTTAAGGGTTT+AGG + chr2.3:42679880-42679899 None:intergenic 20.0%
!! TGTTAACTTAATCAAAATCA+AGG + chr2.3:42680661-42680680 None:intergenic 20.0%
!! TTCATTTATCACTTGTTTAT+TGG + chr2.3:42683555-42683574 None:intergenic 20.0%
!! TTGATTACAAAAGTCTATTT+AGG - chr2.3:42681540-42681559 MS.gene97987:intron 20.0%
!! TTTAAAAGTAGTGATTATGT+TGG - chr2.3:42679918-42679937 MS.gene97987:CDS 20.0%
!! TTTGTATACAAAACAAAACT+AGG + chr2.3:42682585-42682604 None:intergenic 20.0%
!!! GATTACTTTTATCAAAGAAT+AGG - chr2.3:42682893-42682912 MS.gene97987:CDS 20.0%
!!! TTTATTGTTTTTGCTATTTG+TGG - chr2.3:42680240-42680259 MS.gene97987:intron 20.0%
!!! TTTATTTTGTTATTCGTTAC+GGG + chr2.3:42680913-42680932 None:intergenic 20.0%
! AAATTGTAGTGTTTGTGAAA+AGG - chr2.3:42681627-42681646 MS.gene97987:intron 25.0%
! AACTAGTTAAAACAGCTTAT+AGG - chr2.3:42679391-42679410 MS.gene97987:CDS 25.0%
! AAGGATAAGTTATCTATGAA+TGG - chr2.3:42681970-42681989 MS.gene97987:intron 25.0%
! AATGAGTAAACAGGTTATAA+TGG + chr2.3:42680191-42680210 None:intergenic 25.0%
! AATTGTAGTGTTTGTGAAAA+GGG - chr2.3:42681628-42681647 MS.gene97987:intron 25.0%
! ACACTTGGTTGTATTAATTA+AGG + chr2.3:42681498-42681517 None:intergenic 25.0%
! AGGATAAGTTATCTATGAAT+GGG - chr2.3:42681971-42681990 MS.gene97987:intron 25.0%
! AGTATATTAAGAGAAGTAGA+TGG + chr2.3:42681600-42681619 None:intergenic 25.0%
! AGTTTCCAGAATATTAAAGT+TGG - chr2.3:42681889-42681908 MS.gene97987:intron 25.0%
! ATATGAATTAAGAGTCAGTT+TGG - chr2.3:42679666-42679685 MS.gene97987:CDS 25.0%
! CACTTGGTTGTATTAATTAA+GGG + chr2.3:42681497-42681516 None:intergenic 25.0%
! GAATTATGGTTAGATAACAT+AGG - chr2.3:42680606-42680625 MS.gene97987:intron 25.0%
! GTCCAATAAAACAAATATTG+CGG - chr2.3:42682962-42682981 MS.gene97987:CDS 25.0%
! TGATCGTTTGAAAAAAGAAT+GGG - chr2.3:42680011-42680030 MS.gene97987:CDS 25.0%
! TGTTATCTAACCATAATTCT+CGG + chr2.3:42680605-42680624 None:intergenic 25.0%
! TTAGTTACATTTCCTGAATA+AGG + chr2.3:42681359-42681378 None:intergenic 25.0%
! TTCTTTGATCATTTGTGTAT+TGG + chr2.3:42683429-42683448 None:intergenic 25.0%
! TTGATCGTTTGAAAAAAGAA+TGG - chr2.3:42680010-42680029 MS.gene97987:CDS 25.0%
! TTGCATTGCATAATATAATC+AGG - chr2.3:42680957-42680976 MS.gene97987:CDS 25.0%
! TTTATCACTTGTTTATTGGT+AGG + chr2.3:42683551-42683570 None:intergenic 25.0%
!! CTTTTATATTGTGATGAGAT+AGG - chr2.3:42680287-42680306 MS.gene97987:intron 25.0%
!! GCATAAGTTTTTATAGCTTA+TGG - chr2.3:42679816-42679835 MS.gene97987:CDS 25.0%
!! GTATAATGTCATTTGAAAAG+TGG + chr2.3:42681456-42681475 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAAGA+GGG - chr2.3:42679854-42679873 MS.gene97987:CDS 25.0%
!!! AGAATGATTTTGGAATGATT+AGG - chr2.3:42680474-42680493 MS.gene97987:intron 25.0%
!!! ATTCTTTTTTCAAACGATCA+AGG + chr2.3:42680011-42680030 None:intergenic 25.0%
!!! GAATGATTTTGGAATGATTA+GGG - chr2.3:42680475-42680494 MS.gene97987:intron 25.0%
!!! TTATCCTTTTTTGCGATAAA+AGG + chr2.3:42681958-42681977 None:intergenic 25.0%
!!! TTATTTTGTTATTCGTTACG+GGG + chr2.3:42680912-42680931 None:intergenic 25.0%
!!! TTATTTTTTATTTGGAAGGG+AGG - chr2.3:42682325-42682344 MS.gene97987:intron 25.0%
AAAATAGTGTAGAGAACAAG+TGG - chr2.3:42680515-42680534 MS.gene97987:intron 30.0%
AAATGCACTATTTCCAAGAA+AGG - chr2.3:42681676-42681695 MS.gene97987:intron 30.0%
AACTTAGCACCAAAAATAAC+TGG - chr2.3:42683593-42683612 MS.gene97987:intron 30.0%
AGAAACTATATCATCAGTAC+CGG + chr2.3:42683864-42683883 None:intergenic 30.0%
AGTTACAAGAAAAGCCTTAA+AGG + chr2.3:42681313-42681332 None:intergenic 30.0%
ATACGAATTAAGACTCAGTT+TGG - chr2.3:42679553-42679572 MS.gene97987:CDS 30.0%
ATATTGTGATGAGATAGGTT+TGG - chr2.3:42680292-42680311 MS.gene97987:intron 30.0%
ATTATATTAGCCCAGAATGT+AGG - chr2.3:42681276-42681295 MS.gene97987:intron 30.0%
CAAGCTTCTTGAAAAAGAAA+AGG - chr2.3:42682086-42682105 MS.gene97987:intron 30.0%
CAATAAAACAAATATTGCGG+AGG - chr2.3:42682965-42682984 MS.gene97987:CDS 30.0%
CTTACTGAAAAGTTTGGAAA+GGG + chr2.3:42679124-42679143 None:intergenic 30.0%
GAAAGAGGTCAAAAGATTTA+GGG + chr2.3:42681394-42681413 None:intergenic 30.0%
GATTAAGTTAACACTGCATA+TGG - chr2.3:42680668-42680687 MS.gene97987:intron 30.0%
GCGGTTAAATATCAATGATA+CGG - chr2.3:42680367-42680386 MS.gene97987:intron 30.0%
GCTGATAAGAATATTGTTGA+TGG - chr2.3:42683782-42683801 MS.gene97987:intron 30.0%
GGATAAGTTATCTATGAATG+GGG - chr2.3:42681972-42681991 MS.gene97987:intron 30.0%
TACATTGTCAAAACAGCATA+AGG + chr2.3:42679647-42679666 None:intergenic 30.0%
TGACACTAACACTTAACAAA+GGG + chr2.3:42682873-42682892 None:intergenic 30.0%
TGATATATTGCAGGTATTTG+CGG - chr2.3:42680348-42680367 MS.gene97987:intron 30.0%
TGGAAAACTGAAACTTGAAA+AGG - chr2.3:42679972-42679991 MS.gene97987:CDS 30.0%
TTAAGTGAAGTGAGAAAGAT+TGG + chr2.3:42679150-42679169 None:intergenic 30.0%
TTACTTCCCAAGATTAAGAA+CGG - chr2.3:42680158-42680177 MS.gene97987:intron 30.0%
TTATATTAGCCCAGAATGTA+GGG - chr2.3:42681277-42681296 MS.gene97987:intron 30.0%
TTATGGATAGTAGTTGTGAT+CGG - chr2.3:42680446-42680465 MS.gene97987:intron 30.0%
! ACGTTTAGAGCTTATTTGAT+TGG + chr2.3:42682800-42682819 None:intergenic 30.0%
! ATACATGTGACTTTAGAAGT+TGG - chr2.3:42679480-42679499 MS.gene97987:CDS 30.0%
! ATATCAAGGTGTATAGGTTT+TGG + chr2.3:42681168-42681187 None:intergenic 30.0%
! GACTTATTTGAGTTTATCTG+CGG - chr2.3:42679300-42679319 MS.gene97987:CDS 30.0%
! GTTAAGTTGTTTATCCAAAG+AGG - chr2.3:42679853-42679872 MS.gene97987:CDS 30.0%
! GTTTTTCTTTGTTGCAATGT+TGG + chr2.3:42682238-42682257 None:intergenic 30.0%
! TGTTTTCAATCCAAAACTCT+TGG + chr2.3:42681061-42681080 None:intergenic 30.0%
! TTGATCATTTGTGTATTGGT+AGG + chr2.3:42683425-42683444 None:intergenic 30.0%
!! AGGAGCATTTATACACAAAA+GGG - chr2.3:42681560-42681579 MS.gene97987:intron 30.0%
!! CTTGTTTTCATAAGCTGTTT+AGG - chr2.3:42679366-42679385 MS.gene97987:CDS 30.0%
!! TAGGAGCATTTATACACAAA+AGG - chr2.3:42681559-42681578 MS.gene97987:intron 30.0%
!!! ACTACATCTGTTTTAATTGG+TGG - chr2.3:42681031-42681050 MS.gene97987:CDS 30.0%
!!! AGCACTACATCTGTTTTAAT+TGG - chr2.3:42681028-42681047 MS.gene97987:CDS 30.0%
!!! AGTAAATTCAGGTTGGTTTT+TGG - chr2.3:42682349-42682368 MS.gene97987:intron 30.0%
!!! CTAGTTCGTTGTGTTTTTTA+AGG + chr2.3:42682724-42682743 None:intergenic 30.0%
!!! CTCCGCAATATTTGTTTTAT+TGG + chr2.3:42682967-42682986 None:intergenic 30.0%
!!! GTAAATTCAGGTTGGTTTTT+GGG - chr2.3:42682350-42682369 MS.gene97987:intron 30.0%
!!! TGGTAACGATTTTGATTGAT+TGG - chr2.3:42679500-42679519 MS.gene97987:CDS 30.0%
AAAAGCTGTGAAAGGCTAAA+TGG + chr2.3:42683680-42683699 None:intergenic 35.0%
AAACACTTACGAGACTGTTT+GGG - chr2.3:42679327-42679346 MS.gene97987:CDS 35.0%
AAACGATGAAACTGTAGACA+TGG - chr2.3:42683337-42683356 MS.gene97987:intron 35.0%
AAATCGGAAAGTGAAAGCAA+TGG - chr2.3:42683059-42683078 MS.gene97987:intron 35.0%
AAATCGTTGAAACAAGTCCA+AGG - chr2.3:42683900-42683919 MS.gene97987:CDS 35.0%
AACCTATACACCTTGATATG+TGG - chr2.3:42681169-42681188 MS.gene97987:intron 35.0%
AACGAACCGTTCTTAATCTT+GGG + chr2.3:42680167-42680186 None:intergenic 35.0%
AATCGGAAAGTGAAAGCAAT+GGG - chr2.3:42683060-42683079 MS.gene97987:intron 35.0%
AATCGTTGAAACAAGTCCAA+GGG - chr2.3:42683901-42683920 MS.gene97987:CDS 35.0%
AATGGAAATGCTAACATGTG+AGG + chr2.3:42681731-42681750 None:intergenic 35.0%
ACTACCTTATCAGCTAGTTA+TGG + chr2.3:42682384-42682403 None:intergenic 35.0%
AGATGTAGTGCTTTCAATCA+TGG + chr2.3:42681020-42681039 None:intergenic 35.0%
AGGATATTGGGAATAGTTTG+AGG - chr2.3:42680543-42680562 MS.gene97987:intron 35.0%
AGGGAAAAGTTATCTATGAG+TGG - chr2.3:42682003-42682022 MS.gene97987:intron 35.0%
AGGGAGATATTTGACCTTTA+AGG - chr2.3:42681296-42681315 MS.gene97987:intron 35.0%
AGTTTCATCGTTTGTAGAAG+AGG + chr2.3:42683330-42683349 None:intergenic 35.0%
ATAATTCGTGCCACATATCA+AGG + chr2.3:42681182-42681201 None:intergenic 35.0%
ATGGAAATGCTAACATGTGA+GGG + chr2.3:42681730-42681749 None:intergenic 35.0%
ATGTTGGCATTGCAGTATAA+TGG - chr2.3:42679934-42679953 MS.gene97987:CDS 35.0%
ATTGCTTTCACTTTCCGATT+TGG + chr2.3:42683060-42683079 None:intergenic 35.0%
CAAATATCTCCCTACATTCT+GGG + chr2.3:42681289-42681308 None:intergenic 35.0%
CAAGAAAGGATTTCCACATT+GGG - chr2.3:42681690-42681709 MS.gene97987:intron 35.0%
CACAATCACAAAAATGCACA+GGG + chr2.3:42681921-42681940 None:intergenic 35.0%
CATAGTAGAACCGAGAATTA+TGG - chr2.3:42680592-42680611 MS.gene97987:intron 35.0%
CATCAAAAGCCTTGACATTA+AGG - chr2.3:42680411-42680430 MS.gene97987:intron 35.0%
CCTTACTGAAAAGTTTGGAA+AGG + chr2.3:42679125-42679144 None:intergenic 35.0%
CGAAAACTGTTCGAATCATT+GGG - chr2.3:42679021-42679040 MS.gene97987:CDS 35.0%
CGATCTGCAAATGTTGAAAT+AGG - chr2.3:42683926-42683945 MS.gene97987:CDS 35.0%
CTCAACAAATTAAGGGAAAG+AGG + chr2.3:42681409-42681428 None:intergenic 35.0%
CTCTTCTATCACTCTTGTAT+TGG + chr2.3:42683471-42683490 None:intergenic 35.0%
CTGACACTAACACTTAACAA+AGG + chr2.3:42682874-42682893 None:intergenic 35.0%
CTTGGGAAGTAAATATTGAG+AGG + chr2.3:42680150-42680169 None:intergenic 35.0%
GAAAATAGGAAAGGAAACCA+TGG - chr2.3:42680717-42680736 MS.gene97987:CDS 35.0%
GAGAAAATCACTTCCCAAAT+CGG - chr2.3:42683043-42683062 MS.gene97987:intron 35.0%
GAGGACCAACTTTAATATTC+TGG + chr2.3:42681897-42681916 None:intergenic 35.0%
GCTATTTGTGGAAAAGTCTA+TGG - chr2.3:42680252-42680271 MS.gene97987:intron 35.0%
GGAAAAGTTATCTATGAGTG+GGG - chr2.3:42682005-42682024 MS.gene97987:intron 35.0%
GGAAAGAGGTCAAAAGATTT+AGG + chr2.3:42681395-42681414 None:intergenic 35.0%
GGATATTGGGAATAGTTTGA+GGG - chr2.3:42680544-42680563 MS.gene97987:intron 35.0%
GGGAAAAGTTATCTATGAGT+GGG - chr2.3:42682004-42682023 MS.gene97987:intron 35.0%
GTCAAAAGATTTAGGGATAG+AGG + chr2.3:42681387-42681406 None:intergenic 35.0%
GTTATTCTCATTAGCCAACT+GGG + chr2.3:42683654-42683673 None:intergenic 35.0%
TAAAACAAATATTGCGGAGG+AGG - chr2.3:42682968-42682987 MS.gene97987:CDS 35.0%
TAAACACTTACGAGACTGTT+TGG - chr2.3:42679326-42679345 MS.gene97987:CDS 35.0%
TAACGAACCGTTCTTAATCT+TGG + chr2.3:42680168-42680187 None:intergenic 35.0%
TAGAATCAGCAAGGAAATCA+AGG + chr2.3:42679098-42679117 None:intergenic 35.0%
TAGAGAGTCTCAATCATTAC+TGG + chr2.3:42681088-42681107 None:intergenic 35.0%
TATGAATGGGGAAACTGAAA+GGG - chr2.3:42681984-42682003 MS.gene97987:intron 35.0%
TATGGATAGTAGTTGTGATC+GGG - chr2.3:42680447-42680466 MS.gene97987:intron 35.0%
TCAAATATCTCCCTACATTC+TGG + chr2.3:42681290-42681309 None:intergenic 35.0%
TCACAATCACAAAAATGCAC+AGG + chr2.3:42681922-42681941 None:intergenic 35.0%
TCGAAAACTGTTCGAATCAT+TGG - chr2.3:42679020-42679039 MS.gene97987:CDS 35.0%
TCGTAAACCAAACGAATTTG+CGG - chr2.3:42680824-42680843 MS.gene97987:CDS 35.0%
TCTTCAGCAGAATCAAACTT+CGG + chr2.3:42683278-42683297 None:intergenic 35.0%
TGAAAAGTGGCTTTCACTAA+GGG + chr2.3:42681443-42681462 None:intergenic 35.0%
TGCGATTCTTGATATATTGC+AGG - chr2.3:42680339-42680358 MS.gene97987:intron 35.0%
TGGTACCTTACTGAAAAGTT+TGG + chr2.3:42679130-42679149 None:intergenic 35.0%
TGTTAAAAAGCTGCTTAGCT+AGG - chr2.3:42682464-42682483 MS.gene97987:intron 35.0%
TGTTATTCTCATTAGCCAAC+TGG + chr2.3:42683655-42683674 None:intergenic 35.0%
TGTTGGCATTGCAGTATAAT+GGG - chr2.3:42679935-42679954 MS.gene97987:CDS 35.0%
TTCTGATGTTTCGACTCATA+AGG - chr2.3:42680068-42680087 MS.gene97987:intron 35.0%
TTGAAAAGTGGCTTTCACTA+AGG + chr2.3:42681444-42681463 None:intergenic 35.0%
TTGCTTTCACTTTCCGATTT+GGG + chr2.3:42683059-42683078 None:intergenic 35.0%
TTTCAATCCAAAACTCTTGG+AGG + chr2.3:42681058-42681077 None:intergenic 35.0%
TTTGCCATAACTAGCTGATA+AGG - chr2.3:42682377-42682396 MS.gene97987:intron 35.0%
! AAAAACAAAGCAGCTTTGAC+AGG - chr2.3:42682252-42682271 MS.gene97987:intron 35.0%
! AAAACAAAGCAGCTTTGACA+GGG - chr2.3:42682253-42682272 MS.gene97987:intron 35.0%
! AAAGGGATTTAGAATCAGCA+AGG + chr2.3:42679107-42679126 None:intergenic 35.0%
! AAGTTTTCCTAGAGAGCTTA+CGG + chr2.3:42679728-42679747 None:intergenic 35.0%
! ACTGAACCAGAACATGATTT+TGG - chr2.3:42683158-42683177 MS.gene97987:intron 35.0%
! CAGTCCTTTTATCGCAAAAA+AGG - chr2.3:42681951-42681970 MS.gene97987:intron 35.0%
! CATTAGTTTCCCAGAACAAA+CGG - chr2.3:42683706-42683725 MS.gene97987:intron 35.0%
! CCTTTCCAAACTTTTCAGTA+AGG - chr2.3:42679122-42679141 MS.gene97987:CDS 35.0%
! CTGAACCAGAACATGATTTT+GGG - chr2.3:42683159-42683178 MS.gene97987:intron 35.0%
! GAACAGTTTTCGAATGTCAT+CGG + chr2.3:42679013-42679032 None:intergenic 35.0%
! GGAATGATTAGGGTTTTCTA+GGG - chr2.3:42680485-42680504 MS.gene97987:intron 35.0%
! TCAACGATTTTCTCAACTAC+TGG + chr2.3:42683890-42683909 None:intergenic 35.0%
! TCATAAGGAGGATTTGGTAA+AGG - chr2.3:42680083-42680102 MS.gene97987:intron 35.0%
! TCTATCACTCTTGTATTGGT+AGG + chr2.3:42683467-42683486 None:intergenic 35.0%
! TGAACCAGAACATGATTTTG+GGG - chr2.3:42683160-42683179 MS.gene97987:intron 35.0%
! TGGAATGATTAGGGTTTTCT+AGG - chr2.3:42680484-42680503 MS.gene97987:intron 35.0%
! TGGTTTACGATAGAGCATTA+TGG + chr2.3:42680814-42680833 None:intergenic 35.0%
! TGTATTGGTAGGTTGAGATT+CGG + chr2.3:42683414-42683433 None:intergenic 35.0%
! TGTGCATTTTTGTGATTGTG+AGG - chr2.3:42681921-42681940 MS.gene97987:intron 35.0%
!! AAATCATGTTCTGGTTCAGT+AGG + chr2.3:42683158-42683177 None:intergenic 35.0%
!! ACAAGTGGATTGAAGGATAT+TGG - chr2.3:42680530-42680549 MS.gene97987:intron 35.0%
!! CAAGTGGATTGAAGGATATT+GGG - chr2.3:42680531-42680550 MS.gene97987:intron 35.0%
!! CATGATCCTTTCAAGTTCTT+GGG + chr2.3:42682280-42682299 None:intergenic 35.0%
!! GAGAATTTTTGAGAGAGCTA+TGG - chr2.3:42679616-42679635 MS.gene97987:CDS 35.0%
!! GTGCTGATTCTTTGAAAGAA+TGG - chr2.3:42683972-42683991 MS.gene97987:CDS 35.0%
!!! TGATTTTTGGTCTTCAGGAA+TGG - chr2.3:42682940-42682959 MS.gene97987:CDS 35.0%
AAAATGCAGACCCTTCTAGA+TGG - chr2.3:42683113-42683132 MS.gene97987:intron 40.0%
AAACTTCGGCAATATGAGAG+AGG + chr2.3:42683264-42683283 None:intergenic 40.0%
AAAGAAATCTTGGACCCAGT+TGG - chr2.3:42683637-42683656 MS.gene97987:intron 40.0%
AAATGCAGACCCTTCTAGAT+GGG - chr2.3:42683114-42683133 MS.gene97987:intron 40.0%
AACCCATTGAAGCGCAAAAA+AGG - chr2.3:42682991-42683010 MS.gene97987:CDS 40.0%
AAGTTATGCTGAGTTTCAGC+AGG + chr2.3:42683578-42683597 None:intergenic 40.0%
ACATGTTAAGGAACCCAATG+TGG + chr2.3:42681706-42681725 None:intergenic 40.0%
ACGATCAAGGTAATGCTCTT+TGG + chr2.3:42679998-42680017 None:intergenic 40.0%
ACTATCCATAACTGTGATCG+TGG + chr2.3:42680437-42680456 None:intergenic 40.0%
AGAATATTCGTCGGAGGATT+AGG - chr2.3:42678973-42678992 MS.gene97987:CDS 40.0%
AGAGCAGTGAGAATATTCGT+CGG - chr2.3:42678964-42678983 MS.gene97987:CDS 40.0%
ATAAGGATGCAGTTAGCAAG+AGG + chr2.3:42681342-42681361 None:intergenic 40.0%
ATATTGAGAGGCTTTGCATC+TGG + chr2.3:42680138-42680157 None:intergenic 40.0%
ATCGGAAAGTGAAAGCAATG+GGG - chr2.3:42683061-42683080 MS.gene97987:intron 40.0%
CATGGTGGCAAAAGAAATCT+TGG - chr2.3:42683627-42683646 MS.gene97987:intron 40.0%
CCAAGAAAGGATTTCCACAT+TGG - chr2.3:42681689-42681708 MS.gene97987:intron 40.0%
CCAAGAACTTGAAAGGATCA+TGG - chr2.3:42682278-42682297 MS.gene97987:intron 40.0%
CCAATGTGGAAATCCTTTCT+TGG + chr2.3:42681692-42681711 None:intergenic 40.0%
CTATGAATGGGGAAACTGAA+AGG - chr2.3:42681983-42682002 MS.gene97987:intron 40.0%
GAAGATCAGCAAAACTCTGA+TGG - chr2.3:42683293-42683312 MS.gene97987:intron 40.0%
GTAGATAGTGCAACAGATGA+TGG - chr2.3:42682186-42682205 MS.gene97987:intron 40.0%
GTTAAATCCATACCCTTCAG+TGG - chr2.3:42681847-42681866 MS.gene97987:intron 40.0%
GTTCTTTAGCCGTTTGTTCT+GGG + chr2.3:42683718-42683737 None:intergenic 40.0%
GTTTCTAACACCAAGCATCT+TGG - chr2.3:42682108-42682127 MS.gene97987:intron 40.0%
TAACACTTAACAAAGGGCTG+TGG + chr2.3:42682867-42682886 None:intergenic 40.0%
TCACTGATGGCTTCAACTTA+GGG - chr2.3:42683810-42683829 MS.gene97987:intron 40.0%
TCTTCATCGTTCAAGACACT+TGG + chr2.3:42681513-42681532 None:intergenic 40.0%
TGAAAGGATCATGGAAAGTC+AGG - chr2.3:42682287-42682306 MS.gene97987:intron 40.0%
TGATGTTTCGACTCATAAGG+AGG - chr2.3:42680071-42680090 MS.gene97987:intron 40.0%
TGCCACATATCAAGGTGTAT+AGG + chr2.3:42681174-42681193 None:intergenic 40.0%
TGCTAACTGCATCCTTATTC+AGG - chr2.3:42681344-42681363 MS.gene97987:intron 40.0%
TGCTACAAATATACCTGTGC+AGG - chr2.3:42681825-42681844 MS.gene97987:intron 40.0%
TGTGGCACGAATTATTGTGT+AGG - chr2.3:42681187-42681206 MS.gene97987:intron 40.0%
TTCGACTCATAAGGAGGATT+TGG - chr2.3:42680077-42680096 MS.gene97987:intron 40.0%
TTCTTCTATCACCTGTGCAT+TGG + chr2.3:42683513-42683532 None:intergenic 40.0%
! ACTTTTGTAGGTTCGCTTTC+TGG + chr2.3:42683377-42683396 None:intergenic 40.0%
! ATCGGGTGGAAGAATGATTT+TGG - chr2.3:42680464-42680483 MS.gene97987:intron 40.0%
! CATTTTACTCTTGCCTACAG+GGG + chr2.3:42683099-42683118 None:intergenic 40.0%
! CTTTTGTAGGTTCGCTTTCT+GGG + chr2.3:42683376-42683395 None:intergenic 40.0%
! GCATTTTACTCTTGCCTACA+GGG + chr2.3:42683100-42683119 None:intergenic 40.0%
! TCTACAAAGCGTCTTGCATT+AGG + chr2.3:42680114-42680133 None:intergenic 40.0%
! TGCATTTTACTCTTGCCTAC+AGG + chr2.3:42683101-42683120 None:intergenic 40.0%
!! ACACCTGTGCCAGTTATTTT+TGG + chr2.3:42683605-42683624 None:intergenic 40.0%
!! AGAGAACTTGTTGGTAAAGG+AGG - chr2.3:42683221-42683240 MS.gene97987:intron 40.0%
!! ATGATTAGGGTTTTCTAGGG+TGG - chr2.3:42680488-42680507 MS.gene97987:intron 40.0%
!! CCATGATCCTTTCAAGTTCT+TGG + chr2.3:42682281-42682300 None:intergenic 40.0%
!! CTTCTGAGACCATGAAACTT+TGG + chr2.3:42683192-42683211 None:intergenic 40.0%
!! GGCTCTTCTATCACTTTTGT+AGG + chr2.3:42683389-42683408 None:intergenic 40.0%
!! GTAGAGAACAAGTGGATTGA+AGG - chr2.3:42680523-42680542 MS.gene97987:intron 40.0%
!! TATAATGGGTGTGTGTGGAA+AGG - chr2.3:42679949-42679968 MS.gene97987:CDS 40.0%
!! TGGAGAGAACTTGTTGGTAA+AGG - chr2.3:42683218-42683237 MS.gene97987:intron 40.0%
!! TGTTCTGGGAAACTAATGTC+AGG + chr2.3:42683704-42683723 None:intergenic 40.0%
!! TTGTTGTTTGCTGAAGTCCA+TGG + chr2.3:42680737-42680756 None:intergenic 40.0%
!!! CTCCTTTTTTGCGCTTCAAT+GGG + chr2.3:42682996-42683015 None:intergenic 40.0%
AAAGCTAAAGCCGCTGTTAG+TGG - chr2.3:42683998-42684017 MS.gene97987:CDS 45.0%
ACATTTGCAGATCGTTCCCT+TGG + chr2.3:42683920-42683939 None:intergenic 45.0%
ACCATTATGCTTGCACTCAC+TGG + chr2.3:42683762-42683781 None:intergenic 45.0%
ATGAGTGGGGAAGCAGAAAT+TGG - chr2.3:42682018-42682037 MS.gene97987:intron 45.0%
CACTGATGGCTTCAACTTAG+GGG - chr2.3:42683811-42683830 MS.gene97987:intron 45.0%
CTCGAAACCATTCGTACCAA+AGG - chr2.3:42679057-42679076 MS.gene97987:CDS 45.0%
CTTGATTCCGTAAGCTCTCT+AGG - chr2.3:42679718-42679737 MS.gene97987:CDS 45.0%
GACTCCCCAAAATCATGTTC+TGG + chr2.3:42683167-42683186 None:intergenic 45.0%
GCACCAAAAATAACTGGCAC+AGG - chr2.3:42683599-42683618 MS.gene97987:intron 45.0%
GCTTAGCTAGGTTATTCAGC+TGG - chr2.3:42682476-42682495 MS.gene97987:intron 45.0%
GGAAGGGAGGTAGTAAATTC+AGG - chr2.3:42682338-42682357 MS.gene97987:intron 45.0%
GGATCGCTCAAAAGAAAACG+CGG - chr2.3:42684019-42684038 MS.gene97987:CDS 45.0%
GGGAGGTAGTAAATTCAGGT+TGG - chr2.3:42682342-42682361 MS.gene97987:intron 45.0%
GGTATGGATTTAACCTGCAC+AGG + chr2.3:42681841-42681860 None:intergenic 45.0%
GGTTCTTTAGCCGTTTGTTC+TGG + chr2.3:42683719-42683738 None:intergenic 45.0%
GTCACTGATGGCTTCAACTT+AGG - chr2.3:42683809-42683828 MS.gene97987:intron 45.0%
GTGCTTCTTTCCAAGATGCT+TGG + chr2.3:42682121-42682140 None:intergenic 45.0%
TAACTGGCACAGGTGTTTCA+TGG - chr2.3:42683609-42683628 MS.gene97987:intron 45.0%
TAAGGCCACGATCACAGTTA+TGG - chr2.3:42680429-42680448 MS.gene97987:intron 45.0%
TCACAAAAATGCACAGGGAG+AGG + chr2.3:42681916-42681935 None:intergenic 45.0%
TCAGACTGAAGATCTGAAGG+TGG + chr2.3:42680869-42680888 None:intergenic 45.0%
TCCAGTGAGTGCAAGCATAA+TGG - chr2.3:42683758-42683777 MS.gene97987:intron 45.0%
TCGAATGTCATCGGTGGTTA+CGG + chr2.3:42679004-42679023 None:intergenic 45.0%
TCTTCGTGGAGAGAACTTGT+TGG - chr2.3:42683212-42683231 MS.gene97987:intron 45.0%
TGAGTCGAAACATCAGAAGC+TGG + chr2.3:42680066-42680085 None:intergenic 45.0%
TGCTTACCAGTTCCACTGAA+GGG + chr2.3:42681862-42681881 None:intergenic 45.0%
TGGGAATAGTTTGAGGGTGA+GGG - chr2.3:42680550-42680569 MS.gene97987:intron 45.0%
TGTCAGGCAAAAGCTGTGAA+AGG + chr2.3:42683688-42683707 None:intergenic 45.0%
TTAAGGGTTTAGGCCCTCTT+TGG + chr2.3:42679870-42679889 None:intergenic 45.0%
TTGGGAATAGTTTGAGGGTG+AGG - chr2.3:42680549-42680568 MS.gene97987:intron 45.0%
TTTGAGCGATCCACTAACAG+CGG + chr2.3:42684011-42684030 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2.3:42680765-42680784 MS.gene97987:CDS 45.0%
! ACATGTGAGGGCACATGTTA+AGG + chr2.3:42681718-42681737 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2.3:42680764-42680783 MS.gene97987:CDS 45.0%
! CAGTTTTCGAATGTCATCGG+TGG + chr2.3:42679010-42679029 None:intergenic 45.0%
! GTTGATGGAACTGTCACTGA+TGG - chr2.3:42683797-42683816 MS.gene97987:intron 45.0%
! TCTATCACCTGTGCATTGGT+AGG + chr2.3:42683509-42683528 None:intergenic 45.0%
! TGATCGTGGCCTTAATGTCA+AGG + chr2.3:42680423-42680442 None:intergenic 45.0%
!! CTTTTGATTCACTCGAGTCG+CGG + chr2.3:42681118-42681137 None:intergenic 45.0%
!! TGCAGTATAATGGGTGTGTG+TGG - chr2.3:42679944-42679963 MS.gene97987:CDS 45.0%
!!! GCTCCTTTTTTGCGCTTCAA+TGG + chr2.3:42682997-42683016 None:intergenic 45.0%
!!! AAAAAAAAAAATATAGTTTT+AGG - chr2.3:42682644-42682663 MS.gene97987:intron 5.0%
AAACGAATTTGCGGTGAGCG+TGG - chr2.3:42680833-42680852 MS.gene97987:CDS 50.0%
AATGGGTGTGTGTGGAAAGG+TGG - chr2.3:42679952-42679971 MS.gene97987:CDS 50.0%
ACCAGTTCCACTGAAGGGTA+TGG + chr2.3:42681857-42681876 None:intergenic 50.0%
ACGCTCACCGCAAATTCGTT+TGG + chr2.3:42680834-42680853 None:intergenic 50.0%
ACTGCGACCTTTGGTACGAA+TGG + chr2.3:42679067-42679086 None:intergenic 50.0%
AGATCCCAGCCCATCTAGAA+GGG + chr2.3:42683126-42683145 None:intergenic 50.0%
AGTGGGGAAGCAGAAATTGG+TGG - chr2.3:42682021-42682040 MS.gene97987:intron 50.0%
ATCTCTGCCTACCAATGCAC+AGG - chr2.3:42683499-42683518 MS.gene97987:intron 50.0%
ATGCTTGCACTCACTGGAAC+CGG + chr2.3:42683756-42683775 None:intergenic 50.0%
CAGGGACCCAAGAACTTGAA+AGG - chr2.3:42682271-42682290 MS.gene97987:intron 50.0%
CATGGTCTCAGAAGTCTTCG+TGG - chr2.3:42683198-42683217 MS.gene97987:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2.3:42680766-42680785 None:intergenic 50.0%
CCAGAGAATAGTGAGCATGC+CGG - chr2.3:42683842-42683861 MS.gene97987:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2.3:42680769-42680788 MS.gene97987:CDS 50.0%
GAACCGGCAGGGTACAAAAT+GGG + chr2.3:42683740-42683759 None:intergenic 50.0%
GAGCAAGAGCGAATCTAGCA+AGG - chr2.3:42683013-42683032 MS.gene97987:CDS 50.0%
GCAGTGAGAATATTCGTCGG+AGG - chr2.3:42678967-42678986 MS.gene97987:CDS 50.0%
GCGTCAGACTGAAGATCTGA+AGG + chr2.3:42680872-42680891 None:intergenic 50.0%
GGATAGTAGTTGTGATCGGG+TGG - chr2.3:42680450-42680469 MS.gene97987:intron 50.0%
GGGAGTCTGCCAAAGTTTCA+TGG - chr2.3:42683180-42683199 MS.gene97987:intron 50.0%
GTCGAAACATCAGAAGCTGG+TGG + chr2.3:42680063-42680082 None:intergenic 50.0%
GTGCTTACCAGTTCCACTGA+AGG + chr2.3:42681863-42681882 None:intergenic 50.0%
TCCATACCCTTCAGTGGAAC+TGG - chr2.3:42681853-42681872 MS.gene97987:intron 50.0%
TTGGTAGGCAGAGATTCAGC+AGG + chr2.3:42683494-42683513 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2.3:42680763-42680782 MS.gene97987:CDS 50.0%
! GAACCCATTTTGTACCCTGC+CGG - chr2.3:42683734-42683753 MS.gene97987:intron 50.0%
! GGCGTAGAGTCACTTTACTG+TGG + chr2.3:42681147-42681166 None:intergenic 50.0%
! TGGTGGTCCTCCAAGAGTTT+TGG - chr2.3:42681048-42681067 MS.gene97987:CDS 50.0%
! TTGGTAGGTTGAGATTCGGC+AGG + chr2.3:42683410-42683429 None:intergenic 50.0%
! TTGGTAGGTTGAGCTTCAGC+AGG + chr2.3:42683452-42683471 None:intergenic 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2.3:42680777-42680796 MS.gene97987:CDS 55.0%
AGTTTGAGGGTGAGGGAGTG+TGG - chr2.3:42680557-42680576 MS.gene97987:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2.3:42680778-42680797 None:intergenic 55.0%
CAGATCCCAGCCCATCTAGA+AGG + chr2.3:42683127-42683146 None:intergenic 55.0%
CCGGCATGCTCACTATTCTC+TGG + chr2.3:42683845-42683864 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr2.3:42680771-42680790 None:intergenic 55.0%
CTGGCACAGGTGTTTCATGG+TGG - chr2.3:42683612-42683631 MS.gene97987:intron 55.0%
GGAACCGGCAGGGTACAAAA+TGG + chr2.3:42683741-42683760 None:intergenic 55.0%
GTAAGCGAGACTGCGACCTT+TGG + chr2.3:42679076-42679095 None:intergenic 55.0%
GTTACGGGGATAGCTCAGTC+AGG + chr2.3:42680898-42680917 None:intergenic 55.0%
GTTGCGTCTAGTACCCCTGT+AGG - chr2.3:42683083-42683102 MS.gene97987:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2.3:42680777-42680796 None:intergenic 55.0%
! CAGACCCTTCTAGATGGGCT+GGG - chr2.3:42683119-42683138 MS.gene97987:intron 55.0%
!! CTTCTAGATGGGCTGGGATC+TGG - chr2.3:42683125-42683144 MS.gene97987:intron 55.0%
GCAGACCCTTCTAGATGGGC+TGG - chr2.3:42683118-42683137 MS.gene97987:intron 60.0%
TGCACTCACTGGAACCGGCA+GGG + chr2.3:42683751-42683770 None:intergenic 60.0%
TTGCACTCACTGGAACCGGC+AGG + chr2.3:42683752-42683771 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 42678940 42684054 42678940 ID=MS.gene97987
chr2.3 mRNA 42678940 42684054 42678940 ID=MS.gene97987.t1;Parent=MS.gene97987
chr2.3 exon 42683851 42684054 42683851 ID=MS.gene97987.t1.exon1;Parent=MS.gene97987.t1
chr2.3 CDS 42683851 42684054 42683851 ID=cds.MS.gene97987.t1;Parent=MS.gene97987.t1
chr2.3 exon 42682815 42683045 42682815 ID=MS.gene97987.t1.exon2;Parent=MS.gene97987.t1
chr2.3 CDS 42682815 42683045 42682815 ID=cds.MS.gene97987.t1;Parent=MS.gene97987.t1
chr2.3 exon 42680686 42681147 42680686 ID=MS.gene97987.t1.exon3;Parent=MS.gene97987.t1
chr2.3 CDS 42680686 42681147 42680686 ID=cds.MS.gene97987.t1;Parent=MS.gene97987.t1
chr2.3 exon 42678940 42680037 42678940 ID=MS.gene97987.t1.exon4;Parent=MS.gene97987.t1
chr2.3 CDS 42678940 42680037 42678940 ID=cds.MS.gene97987.t1;Parent=MS.gene97987.t1
Gene Sequence

>MS.gene97987

ATGGAGGAAGAAGAAAGCGAGAAGAGAGCAGTGAGAATATTCGTCGGAGGATTAGGCGAAGCCGTAACCACCGATGACATTCGAAAACTGTTCGAATCATTGGGCAGCGTTCAATCACTCGAAACCATTCGTACCAAAGGTCGCAGTCTCGCTTACCTTGATTTCCTTGCTGATTCTAAATCCCTTTCCAAACTTTTCAGTAAGGTACCAATCTTTCTCACTTCACTTAATCACTACAATTATGTTTTTCATTGTTCAATTAACTTTTATAAACTATAGAAGTAAGTAGTTATGATTAAAGTCGAATATTTTATTGATACAGACGATTTTGATTGATTGACAATGAAAAAAGCTTGAATTGACTTATTTGAGTTTATCTGCGGACTTAAACACTTACGAGACTGTTTGGGAGAGACTATGTTTCAGCTTGTTTTCATAAGCTGTTTAGGTCAACTAGTTAAAACAGCTTATAGGTTAGTATATGAAAACAATTTCAATTAATCACTTCCGTCACATTTTTATTATTTTATTTAAATTTTGATACATGTGACTTTAGAAGTTGGTAACGATTTTGATTGATTGGCTGTGTAAAAAATCTTTGTTTTAACAATGTATACGAATTAAGACTCAGTTTGGATAGACTTATTTGAACTTATCTACTCACATAAACACTTAAGAGAATTTTTGAGAGAGCTATGGAAACACCTTATGCTGTTTTGACAATGTATATGAATTAAGAGTCAGTTTGGATTGACTTATATGCATAAGCTGTTTTTATCTTGATTCCGTAAGCTCTCTAGGAAAACTTATGAAAACAAATAAATTGAATGAAAGCAATTTAACTACATTTTATCTTTCACTATAGAAATAGCTTATGCATAAGTTTTTATAGCTTATGGTATGTAAGCATTTAGTTAAGTTGTTTATCCAAAGAGGGCCTAAACCCTTAAATTAATTCTATTTTCTTCGTATATTATTTTTAAAAGTAGTGATTATGTTGGCATTGCAGTATAATGGGTGTGTGTGGAAAGGTGGAAAACTGAAACTTGAAAAGGCCAAAGAGCATTACCTTGATCGTTTGAAAAAAGAATGGGAAGAAGATGCAATTCTTAGTATTGAACCACCAGCTTCTGATGTTTCGACTCATAAGGAGGATTTGGTAAAGGAAAAGCCTAATGCAAGACGCTTTGTAGATCCAGATGCAAAGCCTCTCAATATTTACTTCCCAAGATTAAGAACGGTTCGTTACCATTATAACCTGTTTACTCATTTATTTATTTTAGTATGTTCTATCATATGATTTATTGTTTTTGCTATTTGTGGAAAAGTCTATGGCAGATTGCTCTTCTTTTATATTGTGATGAGATAGGTTTGGTCAAGATTTAAATAGAAGTTGTGTTGCGATTCTTGATATATTGCAGGTATTTGCGGTTAAATATCAATGATACGGTCACAATTTTGATTTCTTAGACATCAAAAGCCTTGACATTAAGGCCACGATCACAGTTATGGATAGTAGTTGTGATCGGGTGGAAGAATGATTTTGGAATGATTAGGGTTTTCTAGGGTGGACTGAAAATAGTGTAGAGAACAAGTGGATTGAAGGATATTGGGAATAGTTTGAGGGTGAGGGAGTGTGGTATCGTAGCAATCATAGTAGAACCGAGAATTATGGTTAGATAACATAGGTTGAGTTGAACGATATATGTTAGAGTTAACCTTGATTTTGATTAAGTTAACACTGCATATGGACATTGAAGAATGTACACAAAATTTAGAAAATAGGAAAGGAAACCATGGACTTCAGCAAACAACAACAACTACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGGATCAAATTTAGCCATAATGCTCTATCGTAAACCAAACGAATTTGCGGTGAGCGTGGATCAAACACGCCACCTTCAGATCTTCAGTCTGACGCTCTCCTGACTGAGCTATCCCCGTAACGAATAACAAAATAAATTTACTTAATCTGAAGGGGTCTGATTGCATTGCATAATATAATCAGGTAAGTAGAAATTTATTGCAATATAGTAAAACTAAAAACCATGATTGAAAGCACTACATCTGTTTTAATTGGTGGTCCTCCAAGAGTTTTGGATTGAAAACATGATCCAGTAATGATTGAGACTCTCTAGTCTCTACCGCGACTCGAGTGAATCAAAAGTTAAAACCACAGTAAAGTGACTCTACGCCAAAACCTATACACCTTGATATGTGGCACGAATTATTGTGTAGGAATATTATATAAGTAAGACATTCATATCTTGATTATTTATGTGAAATCAGTAGTCAGTATATAATCATTATATTAGCCCAGAATGTAGGGAGATATTTGACCTTTAAGGCTTTTCTTGTAACTAAAGCTCCTCTTGCTAACTGCATCCTTATTCAGGAAATGTAACTAATACTACCTCTATCCCTAAATCTTTTGACCTCTTTCCCTTAATTTGTTGAGAAAAAAATTGTCCCTTAGTGAAAGCCACTTTTCAAATGACATTATACATTTTTTTTTTTCAAATACCCTTAATTAATACAACCAAGTGTCTTGAACGATGAAGAGTCAAAATTGATTACAAAAGTCTATTTAGGAGCATTTATACACAAAAGGGACACATTAAATATTCCATCTACTTCTCTTAATATACTAGTATGAAAATTGTAGTGTTTGTGAAAAGGGACAGATGTAGTAATTGAAGTAGATTAAATGCACTATTTCCAAGAAAGGATTTCCACATTGGGTTCCTTAACATGTGCCCTCACATGTTAGCATTTCCATTGTTTAATTATACAGATTTTATGTTTGCTTCTGCATAAATATTTCATTACTAAATCAACTGACTCAAATTTTGCATGCTACAAATATACCTGTGCAGGTTAAATCCATACCCTTCAGTGGAACTGGTAAGCACAAATACAGTTTCCAGAATATTAAAGTTGGTCCTCTCCCTGTGCATTTTTGTGATTGTGAGGAACATTGCAGTCCTTTTATCGCAAAAAAGGATAAGTTATCTATGAATGGGGAAACTGAAAGGGAAAAGTTATCTATGAGTGGGGAAGCAGAAATTGGTGGAATAAATGATGAAGAAATTAACATAATGAATGCTGTGATGAACAAGCTTCTTGAAAAAGAAAAGGTTTCTAACACCAAGCATCTTGGAAAGAAGCACGATTCTTTTGAATCTCTCAGTGTTATTCATTCTAATGAATGTGAAGTAGATAGTGCAACAGATGATGGTGATGATGATGATGATGATCTCATAACCAACATTGCAACAAAGAAAAACAAAGCAGCTTTGACAGGGACCCAAGAACTTGAAAGGATCATGGAAAGTCAGGTTAGTTTCGTATCATTTATTTTTTATTTGGAAGGGAGGTAGTAAATTCAGGTTGGTTTTTGGGTTTGTTTGCCATAACTAGCTGATAAGGTAGTTTTTTTTCTCTCTCTTTTTTTTCTTTTTTATAAAAGCTGAAAGTTGAGAAACTAATTTTTTGTTAAAAAGCTGCTTAGCTAGGTTATTCAGCTGGAAGTATTAAGTAAATTTAACTGTTGAACTATTAGATAAATGTAAATTGATAAAATACATCTATATGATTTTTTTATACAAAATCCTAGTTTTGTTTTGTATACAAAAATACATGTTCAAATAAATATAGTTTTAATACATCAAAAAAAAAAAAAAATATAGTTTTAGGCTTTTCAGTTAACTTTAACTTTATCTTTTTCTTCTAACTTTACTTCGAGCAGCTCCTTAAAAAACACAACGAACTAGTGAGATATTTTTGTTTATCAAATATCTCTATATTGTTTAAACAAGTTTCTAAGCCAATCAAATAAGCTCTAAACGTTTGCTATAAAAATGTATGAAGTAGCTGAAATGACTAGTCAAACGCCACAGCCCTTTGTTAAGTGTTAGTGTCAGATTACTTTTATCAAAGAATAGGTAAGCTATTCAATCTATGTAACTGTGATTTTTGGTCTTCAGGAATGGTCCAATAAAACAAATATTGCGGAGGAGGAACCCATTGAAGCGCAAAAAAGGAGCAAGAGCGAATCTAGCAAGGTTAAGAAGAGAAAATCACTTCCCAAATCGGAAAGTGAAAGCAATGGGGTTGCGTCTAGTACCCCTGTAGGCAAGAGTAAAATGCAGACCCTTCTAGATGGGCTGGGATCTGGTGCAAAGCCTACTGAACCAGAACATGATTTTGGGGAGTCTGCCAAAGTTTCATGGTCTCAGAAGTCTTCGTGGAGAGAACTTGTTGGTAAAGGAGGCAATGCTTCATTCAGTGCCTCTCTCATATTGCCGAAGTTTGATTCTGCTGAAGATCAGCAAAACTCTGATGGTTCTTACACTTCCTCTTCTACAAACGATGAAACTGTAGACATGGAAAGCGATGAATACCCAGAAAGCGAACCTACAAAAGTGATAGAAGAGCCTGCCGAATCTCAACCTACCAATACACAAATGATCAAAGAACACGCTGAAGCTCAACCTACCAATACAAGAGTGATAGAAGAGCCTGCTGAATCTCTGCCTACCAATGCACAGGTGATAGAAGAACCTGCTGAAGCTCAACCTACCAATAAACAAGTGATAAATGAACCTGCTGAAACTCAGCATAACTTAGCACCAAAAATAACTGGCACAGGTGTTTCATGGTGGCAAAAGAAATCTTGGACCCAGTTGGCTAATGAGAATAACAGTCCATTTAGCCTTTCACAGCTTTTGCCTGACATTAGTTTCCCAGAACAAACGGCTAAAGAACCCATTTTGTACCCTGCCGGTTCCAGTGAGTGCAAGCATAATGGTGCTGATAAGAATATTGTTGATGGAACTGTCACTGATGGCTTCAACTTAGGGGAGATTGTACCAGAGAATAGTGAGCATGCCGGTACTGATGATATAGTTTCTGCTCCAGTAGTTGAGAAAATCGTTGAAACAAGTCCAAGGGAACGATCTGCAAATGTTGAAATAGGAGAAACTTGCTCATTTATGAGAAGTGCTGATTCTTTGAAAGAATGGAAAAAAGCTAAAGCCGCTGTTAGTGGATCGCTCAAAAGAAAACGCGGTGAGAAGAAGTAA
Protein sequence

>MS.gene97987.t1

MEEEESEKRAVRIFVGGLGEAVTTDDIRKLFESLGSVQSLETIRTKGRSLAYLDFLADSKSLSKLFSKYNGCVWKGGKLKLEKAKEHYLDRLKKEWEEDAILSIEPPASDVSTHKEDLVKEKPNARRFVDPDAKPLNIYFPRLRTVKSIPFSGTGKHKYSFQNIKVGPLPVHFCDCEEHCSPFIAKKDKLSMNGETEREKLSMSGEAEIGGINDEEINIMNAVMNKLLEKEKVSNTKHLGKKHDSFESLSVIHSNECEVDSATDDGDDDDDDLITNIATKKNKAALTGTQELERIMESQEWSNKTNIAEEEPIEAQKRSKSESSKVKKRKSLPKSESESNGVASSTPVGKSKMQTLLDGLGSGAKPTEPEHDFGESAKVSWSQKSSWRELVGKGGNASFSASLILPKFDSAEDQQNSDGSYTSSSTNDETVDMESDEYPESEPTKVIEEPAESQPTNTQMIKEHAEAQPTNTRVIEEPAESLPTNAQVIEEPAEAQPTNKQVINEPAETQHNLAPKITGTGVSWWQKKSWTQLANENNSPFSLSQLLPDISFPEQTAKEPILYPAGSSECKHNGADKNIVDGTVTDGFNLGEIVPENSEHAGTDDIVSAPVVEKIVETSPRERSANVEIGETCSFMRSADSLKEWKKAKAAVSGSLKRKRGEKK