Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98059.t1 | XP_003614163.1 | 90.9 | 514 | 20 | 1 | 1 | 487 | 147 | 660 | 2.70E-265 | 924.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98059.t1 | P0C7R4 | 62.9 | 515 | 158 | 5 | 1 | 486 | 147 | 657 | 5.5e-182 | 638.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98059.t1 | G7JZ42 | 90.9 | 514 | 20 | 1 | 1 | 487 | 147 | 660 | 2.0e-265 | 924.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98059 | MS.gene050867 | PPI |
| MS.gene035805 | MS.gene98059 | PPI |
| MS.gene98059 | MS.gene072467 | PPI |
| MS.gene98059 | MS.gene73119 | PPI |
| MS.gene98059 | MS.gene29333 | PPI |
| MS.gene98059 | MS.gene050870 | PPI |
| MS.gene98059 | MS.gene064542 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98059.t1 | MTR_5g045620 | 90.856 | 514 | 20 | 1 | 1 | 487 | 147 | 660 | 0.0 | 955 |
| MS.gene98059.t1 | MTR_5g044930 | 90.661 | 514 | 21 | 1 | 1 | 487 | 151 | 664 | 0.0 | 953 |
| MS.gene98059.t1 | MTR_4g081540 | 32.143 | 336 | 189 | 7 | 185 | 485 | 454 | 785 | 6.00e-50 | 182 |
| MS.gene98059.t1 | MTR_1g066900 | 23.951 | 572 | 333 | 15 | 10 | 485 | 136 | 701 | 4.43e-32 | 130 |
| MS.gene98059.t1 | MTR_5g459290 | 91.228 | 57 | 5 | 0 | 22 | 78 | 26 | 82 | 1.28e-31 | 116 |
| MS.gene98059.t1 | MTR_4g099200 | 23.222 | 478 | 303 | 11 | 67 | 486 | 215 | 686 | 4.22e-31 | 127 |
| MS.gene98059.t1 | MTR_1g045880 | 22.449 | 294 | 191 | 5 | 118 | 384 | 229 | 512 | 2.80e-11 | 66.2 |
| MS.gene98059.t1 | MTR_6g079250 | 20.181 | 332 | 210 | 8 | 65 | 396 | 73 | 349 | 4.42e-11 | 65.1 |
| MS.gene98059.t1 | MTR_1g114300 | 22.899 | 345 | 236 | 9 | 89 | 431 | 159 | 475 | 5.36e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98059.t1 | AT1G69290 | 62.791 | 516 | 159 | 5 | 1 | 487 | 147 | 658 | 0.0 | 659 |
| MS.gene98059.t1 | AT1G68980 | 56.809 | 514 | 182 | 5 | 1 | 487 | 119 | 619 | 0.0 | 582 |
| MS.gene98059.t1 | AT1G03100 | 34.125 | 337 | 182 | 8 | 185 | 486 | 462 | 793 | 5.60e-56 | 199 |
| MS.gene98059.t1 | AT3G09650 | 27.809 | 356 | 210 | 5 | 176 | 485 | 408 | 762 | 7.25e-36 | 142 |
| MS.gene98059.t1 | AT4G17616 | 27.004 | 237 | 162 | 3 | 226 | 460 | 416 | 643 | 2.48e-25 | 110 |
| MS.gene98059.t1 | AT1G52620 | 23.516 | 455 | 260 | 17 | 66 | 469 | 167 | 584 | 2.69e-11 | 66.6 |
| MS.gene98059.t1 | AT5G04810 | 22.404 | 366 | 232 | 7 | 96 | 445 | 545 | 874 | 2.98e-11 | 66.6 |
Find 89 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTATTTATATGCACTTAA+AGG | 0.150295 | 5.4:-36179038 | MS.gene98059:CDS |
| TGGGAGGCTCTGTGGGTCTT+GGG | 0.176003 | 5.4:-36178626 | MS.gene98059:CDS |
| TTGGGAGGCTCTGTGGGTCT+TGG | 0.177689 | 5.4:-36178627 | MS.gene98059:CDS |
| TCTTAATAAGGGAAATATTA+AGG | 0.178833 | 5.4:-36178796 | MS.gene98059:CDS |
| TCCTTAACTACTAAACAAAA+AGG | 0.264958 | 5.4:+36178822 | None:intergenic |
| AGTTAAGGAATATCTTAATA+AGG | 0.265323 | 5.4:-36178808 | MS.gene98059:CDS |
| GATTATTGAAGCTCAGAAAT+TGG | 0.273337 | 5.4:-36178760 | MS.gene98059:CDS |
| CTTAATAAGGGAAATATTAA+GGG | 0.314575 | 5.4:-36178795 | MS.gene98059:CDS |
| AAGCCTGATGTGTTTAGTTT+TGG | 0.323414 | 5.4:-36179068 | MS.gene98059:CDS |
| AAGAAAGCTGCCATCAATTC+AGG | 0.328046 | 5.4:+36178349 | None:intergenic |
| CCGAAACATATCCGTTAATC+AGG | 0.334305 | 5.4:+36178167 | None:intergenic |
| TGAAAATATTTGTTGATAAG+TGG | 0.364460 | 5.4:-36177970 | MS.gene98059:CDS |
| GGAATGCATCAACCAGATTC+TGG | 0.365582 | 5.4:+36178059 | None:intergenic |
| AGCAAGGTTGTCATTGTTCC+TGG | 0.368668 | 5.4:+36179262 | None:intergenic |
| AGCAGTGTTGGCGGATTTCA+TGG | 0.368697 | 5.4:+36179373 | None:intergenic |
| GGTCATTCGGCTCGAATTGT+AGG | 0.371011 | 5.4:+36178203 | None:intergenic |
| CTTATTTATATGCACTTAAA+GGG | 0.372712 | 5.4:-36179037 | MS.gene98059:CDS |
| GATCAAATTTGACCAGAATC+TGG | 0.372731 | 5.4:-36178071 | MS.gene98059:CDS |
| TGATGCATTCCTGTATTCTA+TGG | 0.375559 | 5.4:-36178047 | MS.gene98059:CDS |
| AGCTCAAAGTGGCCAGGTTA+AGG | 0.380872 | 5.4:-36177913 | MS.gene98059:CDS |
| GACTATAATGACAGGTTTGA+TGG | 0.384239 | 5.4:-36178383 | MS.gene98059:CDS |
| TGGTCAAATTTGATCCCCTT+TGG | 0.391575 | 5.4:+36178079 | None:intergenic |
| GACAAGTATGTCTGGTCATT+CGG | 0.398593 | 5.4:+36178190 | None:intergenic |
| CCTGATTAACGGATATGTTT+CGG | 0.401301 | 5.4:-36178167 | MS.gene98059:CDS |
| TTGAAGTTGGTACTCATGAT+TGG | 0.409872 | 5.4:-36178300 | MS.gene98059:CDS |
| GAGATACAAGCAAGCGTTCA+TGG | 0.416295 | 5.4:-36177948 | MS.gene98059:CDS |
| GGGAGGCTCTGTGGGTCTTG+GGG | 0.421493 | 5.4:-36178625 | MS.gene98059:CDS |
| GTTAAGGAATATCTTAATAA+GGG | 0.424712 | 5.4:-36178807 | MS.gene98059:CDS |
| CTTGATGAGATGAATGCTTT+GGG | 0.425114 | 5.4:-36178645 | MS.gene98059:CDS |
| GTGACGGAGATTAGTAGTTC+AGG | 0.428125 | 5.4:-36178540 | MS.gene98059:CDS |
| ACATACTTGTCCCTGATTAA+CGG | 0.428702 | 5.4:-36178178 | MS.gene98059:CDS |
| TCTTGATGAGATGAATGCTT+TGG | 0.429748 | 5.4:-36178646 | MS.gene98059:CDS |
| CTCTGTTTAGGGACATGAGA+GGG | 0.436667 | 5.4:-36178438 | MS.gene98059:intron |
| GTCAATGCATGTGTTAGTAT+TGG | 0.437746 | 5.4:-36178693 | MS.gene98059:CDS |
| AACTGCGGAGGCTACTCTAT+TGG | 0.438932 | 5.4:-36178562 | MS.gene98059:CDS |
| GGTCTATGTGCCGATCTTGA+AGG | 0.443651 | 5.4:-36178604 | MS.gene98059:CDS |
| GTTGACGAGTCTATAGGTTT+CGG | 0.444814 | 5.4:-36178720 | MS.gene98059:CDS |
| ATCAAAGTTGACGAGTCTAT+AGG | 0.458638 | 5.4:-36178726 | MS.gene98059:CDS |
| ACTGATGCTGACAGAGTTGT+TGG | 0.462007 | 5.4:-36179113 | MS.gene98059:CDS |
| AATGCTTTGGGAGGCTCTGT+GGG | 0.462220 | 5.4:-36178633 | MS.gene98059:CDS |
| GCATTACAAGCAGCAACATC+AGG | 0.464759 | 5.4:+36179173 | None:intergenic |
| CGAGGGTTCTTGATTTGAAA+GGG | 0.470046 | 5.4:-36178414 | MS.gene98059:CDS |
| TTTCTTAGATGAGGTGGTTG+AGG | 0.470772 | 5.4:-36178332 | MS.gene98059:CDS |
| GGTTGCTTTCGATGAGAAGC+TGG | 0.472570 | 5.4:-36179207 | MS.gene98059:CDS |
| ATCAGGCTTAACACCAAGCT+TGG | 0.483315 | 5.4:+36179082 | None:intergenic |
| GAATCATCGACCTGAATTGA+TGG | 0.484776 | 5.4:-36178359 | MS.gene98059:CDS |
| AAACCAAAACTAAACACATC+AGG | 0.487553 | 5.4:+36179065 | None:intergenic |
| CTCCCTTGACCATAGAATAC+AGG | 0.491105 | 5.4:+36178038 | None:intergenic |
| GGGTGCTCGTTGATATTGCC+AGG | 0.495578 | 5.4:-36179280 | MS.gene98059:CDS |
| TTGAATGATAGATATGATGA+GGG | 0.498222 | 5.4:-36178870 | MS.gene98059:CDS |
| CATTGATCTGACAAGTGAAA+AGG | 0.498942 | 5.4:+36179343 | None:intergenic |
| TAATCAGGGACAAGTATGTC+TGG | 0.515514 | 5.4:+36178182 | None:intergenic |
| GGCAGCTTTCTTAGATGAGG+TGG | 0.521040 | 5.4:-36178338 | MS.gene98059:CDS |
| GGCAGGAGGAGCAGTGTTGG+CGG | 0.523088 | 5.4:+36179364 | None:intergenic |
| ACCCCGCCCCACGAATGAAA+AGG | 0.523118 | 5.4:+36179299 | None:intergenic |
| GAATGCTTTGGGAGGCTCTG+TGG | 0.523683 | 5.4:-36178634 | MS.gene98059:CDS |
| TTGCAGTAAGCCTTCAAGAT+CGG | 0.528610 | 5.4:+36178594 | None:intergenic |
| TAGGGACATGAGAGGGGCGA+GGG | 0.531432 | 5.4:-36178431 | MS.gene98059:CDS |
| ATTCCTGTATTCTATGGTCA+AGG | 0.532504 | 5.4:-36178041 | MS.gene98059:CDS |
| TTAGGGACATGAGAGGGGCG+AGG | 0.535492 | 5.4:-36178432 | MS.gene98059:intron |
| GAGGATCCTCGTATTGAAGT+TGG | 0.536511 | 5.4:-36178313 | MS.gene98059:CDS |
| GCGAGGGTTCTTGATTTGAA+AGG | 0.543509 | 5.4:-36178415 | MS.gene98059:CDS |
| TTTGAATGATAGATATGATG+AGG | 0.545338 | 5.4:-36178871 | MS.gene98059:CDS |
| GTTGGAATTATGTCCAAGCT+TGG | 0.570246 | 5.4:-36179095 | MS.gene98059:CDS |
| AGATTCAAGATGAAAACAGC+AGG | 0.574249 | 5.4:+36179139 | None:intergenic |
| AGTTACTTGACTATAATGAC+AGG | 0.574269 | 5.4:-36178391 | MS.gene98059:CDS |
| AAAGGCAGGAGGAGCAGTGT+TGG | 0.576259 | 5.4:+36179361 | None:intergenic |
| GAGGTTAAGAGAAAGTTAGC+GGG | 0.585709 | 5.4:-36178109 | MS.gene98059:CDS |
| CTGTATTCTATGGTCAAGGG+AGG | 0.590069 | 5.4:-36178037 | MS.gene98059:CDS |
| GATGGCAGCTTTCTTAGATG+AGG | 0.607823 | 5.4:-36178341 | MS.gene98059:CDS |
| GAATGATAGATATGATGAGG+GGG | 0.608681 | 5.4:-36178868 | MS.gene98059:CDS |
| TCTCTGTTTAGGGACATGAG+AGG | 0.609112 | 5.4:-36178439 | MS.gene98059:intron |
| ATGCAAGAAGAACTTTCAGA+AGG | 0.609422 | 5.4:-36178234 | MS.gene98059:CDS |
| TGATGCTGTGATGCAAGTTG+TGG | 0.610490 | 5.4:-36178008 | MS.gene98059:CDS |
| GATGAGATGAATGCTTTGGG+AGG | 0.611114 | 5.4:-36178642 | MS.gene98059:CDS |
| TTCCTGTATTCTATGGTCAA+GGG | 0.611331 | 5.4:-36178040 | MS.gene98059:CDS |
| CGAGGTTAAGAGAAAGTTAG+CGG | 0.617178 | 5.4:-36178110 | MS.gene98059:CDS |
| CGAAACATATCCGTTAATCA+GGG | 0.620823 | 5.4:+36178168 | None:intergenic |
| TGTAATGATGTTGTGGAACG+AGG | 0.624533 | 5.4:-36178128 | MS.gene98059:CDS |
| TCTGTTTAGGGACATGAGAG+GGG | 0.625777 | 5.4:-36178437 | MS.gene98059:intron |
| GGAGGCTACTCTATTGGTGA+CGG | 0.634065 | 5.4:-36178556 | MS.gene98059:CDS |
| CAAAGAGAATCGAACTGCGG+AGG | 0.652528 | 5.4:-36178574 | MS.gene98059:CDS |
| AGGTTAAGAGAAAGTTAGCG+GGG | 0.663255 | 5.4:-36178108 | MS.gene98059:CDS |
| TGAATGATAGATATGATGAG+GGG | 0.663411 | 5.4:-36178869 | MS.gene98059:CDS |
| GATCTGACAAGTGAAAAGGC+AGG | 0.673100 | 5.4:+36179347 | None:intergenic |
| CTGACAAGTGAAAAGGCAGG+AGG | 0.690381 | 5.4:+36179350 | None:intergenic |
| GGTTAAGAGAAAGTTAGCGG+GGG | 0.720845 | 5.4:-36178107 | MS.gene98059:CDS |
| CTGCAAAGAGAATCGAACTG+CGG | 0.726664 | 5.4:-36178577 | MS.gene98059:CDS |
| TGAGTACCAACTTCAATACG+AGG | 0.734272 | 5.4:+36178307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAACATTTATTGTTTT+TGG | + | chr5.4:36178259-36178278 | None:intergenic | 10.0% |
| !!! | TTTTATTCTAATTTGATTAG+TGG | - | chr5.4:36178273-36178292 | MS.gene98059:CDS | 15.0% |
| !! | AGTTAAGGAATATCTTAATA+AGG | - | chr5.4:36178410-36178429 | MS.gene98059:CDS | 20.0% |
| !! | CTTAATAAGGGAAATATTAA+GGG | - | chr5.4:36178423-36178442 | MS.gene98059:CDS | 20.0% |
| !! | CTTATTTATATGCACTTAAA+GGG | - | chr5.4:36178181-36178200 | MS.gene98059:CDS | 20.0% |
| !! | GTTAAGGAATATCTTAATAA+GGG | - | chr5.4:36178411-36178430 | MS.gene98059:CDS | 20.0% |
| !! | TCTTAATAAGGGAAATATTA+AGG | - | chr5.4:36178422-36178441 | MS.gene98059:CDS | 20.0% |
| !!! | TGAAAATATTTGTTGATAAG+TGG | - | chr5.4:36179248-36179267 | MS.gene98059:CDS | 20.0% |
| ! | CCTTAACTACTAAACAAAAA+GGG | + | chr5.4:36178398-36178417 | None:intergenic | 25.0% |
| ! | GAAAAAGAATGTCAGAAAAA+TGG | - | chr5.4:36179327-36179346 | MS.gene98059:CDS | 25.0% |
| ! | GCTTATTTATATGCACTTAA+AGG | - | chr5.4:36178180-36178199 | MS.gene98059:CDS | 25.0% |
| ! | TCCTTAACTACTAAACAAAA+AGG | + | chr5.4:36178399-36178418 | None:intergenic | 25.0% |
| ! | TTGAATGATAGATATGATGA+GGG | - | chr5.4:36178348-36178367 | MS.gene98059:CDS | 25.0% |
| ! | TTTGAATGATAGATATGATG+AGG | - | chr5.4:36178347-36178366 | MS.gene98059:CDS | 25.0% |
| !!! | ATTTTGATGTAATGATGTTG+TGG | - | chr5.4:36179083-36179102 | MS.gene98059:CDS | 25.0% |
| !!! | GCTTATTGCTTTTAAGAATT+GGG | - | chr5.4:36179354-36179373 | MS.gene98059:CDS | 25.0% |
| AAACCAAAACTAAACACATC+AGG | + | chr5.4:36178156-36178175 | None:intergenic | 30.0% | |
| AGTTACTTGACTATAATGAC+AGG | - | chr5.4:36178827-36178846 | MS.gene98059:CDS | 30.0% | |
| GATTATTGAAGCTCAGAAAT+TGG | - | chr5.4:36178458-36178477 | MS.gene98059:intron | 30.0% | |
| GTCTTCAAAAAGAGGTAAAA+AGG | + | chr5.4:36177983-36178002 | None:intergenic | 30.0% | |
| TGAATGATAGATATGATGAG+GGG | - | chr5.4:36178349-36178368 | MS.gene98059:CDS | 30.0% | |
| TTTCTATCAGAGCATATCAT+AGG | + | chr5.4:36178724-36178743 | None:intergenic | 30.0% | |
| ! | TTTCATTCCTTTTCATTCGT+GGG | - | chr5.4:36177912-36177931 | MS.gene98059:CDS | 30.0% |
| ! | TTTTCATTCCTTTTCATTCG+TGG | - | chr5.4:36177911-36177930 | MS.gene98059:CDS | 30.0% |
| !! | AAAGTTTTGATGCTTGGTTT+TGG | - | chr5.4:36178228-36178247 | MS.gene98059:CDS | 30.0% |
| !! | CCCTTTTTGTTTAGTAGTTA+AGG | - | chr5.4:36178395-36178414 | MS.gene98059:CDS | 30.0% |
| !! | CGCTTATTGCTTTTAAGAAT+TGG | - | chr5.4:36179353-36179372 | MS.gene98059:CDS | 30.0% |
| !! | GAGTTAAAAGTTTTGATGCT+TGG | - | chr5.4:36178222-36178241 | MS.gene98059:CDS | 30.0% |
| ACATACTTGTCCCTGATTAA+CGG | - | chr5.4:36179040-36179059 | MS.gene98059:CDS | 35.0% | |
| AGATTCAAGATGAAAACAGC+AGG | + | chr5.4:36178082-36178101 | None:intergenic | 35.0% | |
| ATCAAAGTTGACGAGTCTAT+AGG | - | chr5.4:36178492-36178511 | MS.gene98059:intron | 35.0% | |
| ATGCAAGAAGAACTTTCAGA+AGG | - | chr5.4:36178984-36179003 | MS.gene98059:CDS | 35.0% | |
| ATTCCTGTATTCTATGGTCA+AGG | - | chr5.4:36179177-36179196 | MS.gene98059:CDS | 35.0% | |
| CATTGATCTGACAAGTGAAA+AGG | + | chr5.4:36177878-36177897 | None:intergenic | 35.0% | |
| CGAAACATATCCGTTAATCA+GGG | + | chr5.4:36179053-36179072 | None:intergenic | 35.0% | |
| CTTGATGAGATGAATGCTTT+GGG | - | chr5.4:36178573-36178592 | MS.gene98059:CDS | 35.0% | |
| GAATGATAGATATGATGAGG+GGG | - | chr5.4:36178350-36178369 | MS.gene98059:CDS | 35.0% | |
| GACACATAAAAAGCTCAAAG+TGG | - | chr5.4:36179294-36179313 | MS.gene98059:CDS | 35.0% | |
| GACTATAATGACAGGTTTGA+TGG | - | chr5.4:36178835-36178854 | MS.gene98059:CDS | 35.0% | |
| GATCAAATTTGACCAGAATC+TGG | - | chr5.4:36179147-36179166 | MS.gene98059:CDS | 35.0% | |
| GTCAATGCATGTGTTAGTAT+TGG | - | chr5.4:36178525-36178544 | MS.gene98059:intron | 35.0% | |
| TCTTGATGAGATGAATGCTT+TGG | - | chr5.4:36178572-36178591 | MS.gene98059:CDS | 35.0% | |
| TGATGCATTCCTGTATTCTA+TGG | - | chr5.4:36179171-36179190 | MS.gene98059:CDS | 35.0% | |
| TTCCTGTATTCTATGGTCAA+GGG | - | chr5.4:36179178-36179197 | MS.gene98059:CDS | 35.0% | |
| ! | CCTGATTAACGGATATGTTT+CGG | - | chr5.4:36179051-36179070 | MS.gene98059:CDS | 35.0% |
| ! | GACATTCTTTTTCCTTAACC+TGG | + | chr5.4:36179320-36179339 | None:intergenic | 35.0% |
| ! | TAGTAGTTCAGGTCTAAAGT+TGG | - | chr5.4:36178689-36178708 | MS.gene98059:CDS | 35.0% |
| ! | TTCATTCCTTTTCATTCGTG+GGG | - | chr5.4:36177913-36177932 | MS.gene98059:CDS | 35.0% |
| !! | AAGCCTGATGTGTTTAGTTT+TGG | - | chr5.4:36178150-36178169 | MS.gene98059:CDS | 35.0% |
| !! | ATCCACACTTTTTGTAAAGC+TGG | - | chr5.4:36178950-36178969 | MS.gene98059:CDS | 35.0% |
| !! | ATTGCTTTTAAGAATTGGGC+TGG | - | chr5.4:36179358-36179377 | MS.gene98059:CDS | 35.0% |
| !! | TCCACACTTTTTGTAAAGCT+GGG | - | chr5.4:36178951-36178970 | MS.gene98059:CDS | 35.0% |
| !! | TCTTTTTGAAGACAACTGCA+GGG | - | chr5.4:36177990-36178009 | MS.gene98059:CDS | 35.0% |
| !! | TTGAAGTTGGTACTCATGAT+TGG | - | chr5.4:36178918-36178937 | MS.gene98059:CDS | 35.0% |
| AAAGAGGTAAAAAGGCAGCA+AGG | + | chr5.4:36177975-36177994 | None:intergenic | 40.0% | |
| AAGAAAGCTGCCATCAATTC+AGG | + | chr5.4:36178872-36178891 | None:intergenic | 40.0% | |
| AGGTTAAGAGAAAGTTAGCG+GGG | - | chr5.4:36179110-36179129 | MS.gene98059:CDS | 40.0% | |
| ATAAAAAGCTCAAAGTGGCC+AGG | - | chr5.4:36179299-36179318 | MS.gene98059:CDS | 40.0% | |
| CCGAAACATATCCGTTAATC+AGG | + | chr5.4:36179054-36179073 | None:intergenic | 40.0% | |
| CGAGGTTAAGAGAAAGTTAG+CGG | - | chr5.4:36179108-36179127 | MS.gene98059:CDS | 40.0% | |
| CTGATAGAAACATCCATGTC+CGG | - | chr5.4:36178734-36178753 | MS.gene98059:CDS | 40.0% | |
| CTGCAGTTGTCTTCAAAAAG+AGG | + | chr5.4:36177991-36178010 | None:intergenic | 40.0% | |
| GAATCATCGACCTGAATTGA+TGG | - | chr5.4:36178859-36178878 | MS.gene98059:CDS | 40.0% | |
| GACAAGTATGTCTGGTCATT+CGG | + | chr5.4:36179031-36179050 | None:intergenic | 40.0% | |
| GAGGTTAAGAGAAAGTTAGC+GGG | - | chr5.4:36179109-36179128 | MS.gene98059:CDS | 40.0% | |
| GTTGACGAGTCTATAGGTTT+CGG | - | chr5.4:36178498-36178517 | MS.gene98059:intron | 40.0% | |
| GTTGGAATTATGTCCAAGCT+TGG | - | chr5.4:36178123-36178142 | MS.gene98059:CDS | 40.0% | |
| TAATCAGGGACAAGTATGTC+TGG | + | chr5.4:36179039-36179058 | None:intergenic | 40.0% | |
| TCCCAGCTTTACAAAAAGTG+TGG | + | chr5.4:36178955-36178974 | None:intergenic | 40.0% | |
| TGAGTACCAACTTCAATACG+AGG | + | chr5.4:36178914-36178933 | None:intergenic | 40.0% | |
| TGGTCAAATTTGATCCCCTT+TGG | + | chr5.4:36179142-36179161 | None:intergenic | 40.0% | |
| TGTAATGATGTTGTGGAACG+AGG | - | chr5.4:36179090-36179109 | MS.gene98059:CDS | 40.0% | |
| TTGCAGTAAGCCTTCAAGAT+CGG | + | chr5.4:36178627-36178646 | None:intergenic | 40.0% | |
| TTTCTTAGATGAGGTGGTTG+AGG | - | chr5.4:36178886-36178905 | MS.gene98059:CDS | 40.0% | |
| ! | AGTCGGTCTTTTCTCTGTTT+AGG | - | chr5.4:36178768-36178787 | MS.gene98059:CDS | 40.0% |
| ! | CGAGGGTTCTTGATTTGAAA+GGG | - | chr5.4:36178804-36178823 | MS.gene98059:CDS | 40.0% |
| ! | GTCGGTCTTTTCTCTGTTTA+GGG | - | chr5.4:36178769-36178788 | MS.gene98059:CDS | 40.0% |
| ! | TTCAGGTCTAAAGTTGGAAG+TGG | - | chr5.4:36178695-36178714 | MS.gene98059:CDS | 40.0% |
| !! | ACACTTTTTGTAAAGCTGGG+AGG | - | chr5.4:36178954-36178973 | MS.gene98059:CDS | 40.0% |
| !! | CTCTTTTTGAAGACAACTGC+AGG | - | chr5.4:36177989-36178008 | MS.gene98059:CDS | 40.0% |
| ACTGATGCTGACAGAGTTGT+TGG | - | chr5.4:36178105-36178124 | MS.gene98059:CDS | 45.0% | |
| AGCAAGGTTGTCATTGTTCC+TGG | + | chr5.4:36177959-36177978 | None:intergenic | 45.0% | |
| ATCAGGCTTAACACCAAGCT+TGG | + | chr5.4:36178139-36178158 | None:intergenic | 45.0% | |
| CTCCCTTGACCATAGAATAC+AGG | + | chr5.4:36179183-36179202 | None:intergenic | 45.0% | |
| CTCTGTTTAGGGACATGAGA+GGG | - | chr5.4:36178780-36178799 | MS.gene98059:CDS | 45.0% | |
| CTGCAAAGAGAATCGAACTG+CGG | - | chr5.4:36178641-36178660 | MS.gene98059:CDS | 45.0% | |
| CTGTATTCTATGGTCAAGGG+AGG | - | chr5.4:36179181-36179200 | MS.gene98059:CDS | 45.0% | |
| GAGATACAAGCAAGCGTTCA+TGG | - | chr5.4:36179270-36179289 | MS.gene98059:CDS | 45.0% | |
| GAGGATCCTCGTATTGAAGT+TGG | - | chr5.4:36178905-36178924 | MS.gene98059:CDS | 45.0% | |
| GATATGATGAGGGGGAAGTT+TGG | - | chr5.4:36178358-36178377 | MS.gene98059:CDS | 45.0% | |
| GATCTGACAAGTGAAAAGGC+AGG | + | chr5.4:36177874-36177893 | None:intergenic | 45.0% | |
| GATGGCAGCTTTCTTAGATG+AGG | - | chr5.4:36178877-36178896 | MS.gene98059:CDS | 45.0% | |
| GCATTACAAGCAGCAACATC+AGG | + | chr5.4:36178048-36178067 | None:intergenic | 45.0% | |
| GGAATGCATCAACCAGATTC+TGG | + | chr5.4:36179162-36179181 | None:intergenic | 45.0% | |
| GGTTAAGAGAAAGTTAGCGG+GGG | - | chr5.4:36179111-36179130 | MS.gene98059:CDS | 45.0% | |
| TCTCTGTTTAGGGACATGAG+AGG | - | chr5.4:36178779-36178798 | MS.gene98059:CDS | 45.0% | |
| TCTGTTTAGGGACATGAGAG+GGG | - | chr5.4:36178781-36178800 | MS.gene98059:CDS | 45.0% | |
| TGATGCTGTGATGCAAGTTG+TGG | - | chr5.4:36179210-36179229 | MS.gene98059:CDS | 45.0% | |
| ! | ATTCCTTTTCATTCGTGGGG+CGG | - | chr5.4:36177916-36177935 | MS.gene98059:CDS | 45.0% |
| ! | GATGAGATGAATGCTTTGGG+AGG | - | chr5.4:36178576-36178595 | MS.gene98059:CDS | 45.0% |
| ! | GCGAGGGTTCTTGATTTGAA+AGG | - | chr5.4:36178803-36178822 | MS.gene98059:CDS | 45.0% |
| ! | GTGACGGAGATTAGTAGTTC+AGG | - | chr5.4:36178678-36178697 | MS.gene98059:CDS | 45.0% |
| AACTGCGGAGGCTACTCTAT+TGG | - | chr5.4:36178656-36178675 | MS.gene98059:CDS | 50.0% | |
| AAGAGAAAGTTAGCGGGGGA+TGG | - | chr5.4:36179115-36179134 | MS.gene98059:CDS | 50.0% | |
| AGAGAAAGTTAGCGGGGGAT+GGG | - | chr5.4:36179116-36179135 | MS.gene98059:CDS | 50.0% | |
| AGCTCAAAGTGGCCAGGTTA+AGG | - | chr5.4:36179305-36179324 | MS.gene98059:CDS | 50.0% | |
| CAAAGAGAATCGAACTGCGG+AGG | - | chr5.4:36178644-36178663 | MS.gene98059:CDS | 50.0% | |
| CTGAAAGTCTTGACCGGACA+TGG | + | chr5.4:36178750-36178769 | None:intergenic | 50.0% | |
| CTGACAAGTGAAAAGGCAGG+AGG | + | chr5.4:36177871-36177890 | None:intergenic | 50.0% | |
| GACCGACTGAAAGTCTTGAC+CGG | + | chr5.4:36178756-36178775 | None:intergenic | 50.0% | |
| GGAGGCTACTCTATTGGTGA+CGG | - | chr5.4:36178662-36178681 | MS.gene98059:CDS | 50.0% | |
| GGCAGCTTTCTTAGATGAGG+TGG | - | chr5.4:36178880-36178899 | MS.gene98059:CDS | 50.0% | |
| GTCCGGTCAAGACTTTCAGT+CGG | - | chr5.4:36178751-36178770 | MS.gene98059:CDS | 50.0% | |
| ! | GGTCATTCGGCTCGAATTGT+AGG | + | chr5.4:36179018-36179037 | None:intergenic | 50.0% |
| ! | GGTCTATGTGCCGATCTTGA+AGG | - | chr5.4:36178614-36178633 | MS.gene98059:CDS | 50.0% |
| ! | GGTTGCTTTCGATGAGAAGC+TGG | - | chr5.4:36178011-36178030 | MS.gene98059:CDS | 50.0% |
| ! | TTCCTTTTCATTCGTGGGGC+GGG | - | chr5.4:36177917-36177936 | MS.gene98059:CDS | 50.0% |
| !! | AATGCTTTGGGAGGCTCTGT+GGG | - | chr5.4:36178585-36178604 | MS.gene98059:CDS | 50.0% |
| AAAGGCAGGAGGAGCAGTGT+TGG | + | chr5.4:36177860-36177879 | None:intergenic | 55.0% | |
| GGGTGCTCGTTGATATTGCC+AGG | - | chr5.4:36177938-36177957 | MS.gene98059:CDS | 55.0% | |
| ! | TCCTTTTCATTCGTGGGGCG+GGG | - | chr5.4:36177918-36177937 | MS.gene98059:CDS | 55.0% |
| !! | GAATGCTTTGGGAGGCTCTG+TGG | - | chr5.4:36178584-36178603 | MS.gene98059:CDS | 55.0% |
| ACCCCGCCCCACGAATGAAA+AGG | + | chr5.4:36177922-36177941 | None:intergenic | 60.0% | |
| TAGGGACATGAGAGGGGCGA+GGG | - | chr5.4:36178787-36178806 | MS.gene98059:CDS | 60.0% | |
| TGGGAGGCTCTGTGGGTCTT+GGG | - | chr5.4:36178592-36178611 | MS.gene98059:CDS | 60.0% | |
| TTAGCGGGGGATGGGCCAAA+GGG | - | chr5.4:36179124-36179143 | MS.gene98059:CDS | 60.0% | |
| TTAGGGACATGAGAGGGGCG+AGG | - | chr5.4:36178786-36178805 | MS.gene98059:CDS | 60.0% | |
| TTGGGAGGCTCTGTGGGTCT+TGG | - | chr5.4:36178591-36178610 | MS.gene98059:CDS | 60.0% | |
| GGGAGGCTCTGTGGGTCTTG+GGG | - | chr5.4:36178593-36178612 | MS.gene98059:CDS | 65.0% | |
| GTTAGCGGGGGATGGGCCAA+AGG | - | chr5.4:36179123-36179142 | MS.gene98059:CDS | 65.0% | |
| TAGCGGGGGATGGGCCAAAG+GGG | - | chr5.4:36179125-36179144 | MS.gene98059:CDS | 65.0% | |
| ! | GGCAGGAGGAGCAGTGTTGG+CGG | + | chr5.4:36177857-36177876 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 36177847 | 36179393 | 36177847 | ID=MS.gene98059 |
| chr5.4 | mRNA | 36177847 | 36179393 | 36177847 | ID=MS.gene98059.t1;Parent=MS.gene98059 |
| chr5.4 | exon | 36178534 | 36179393 | 36178534 | ID=MS.gene98059.t1.exon1;Parent=MS.gene98059.t1 |
| chr5.4 | CDS | 36178534 | 36179393 | 36178534 | ID=cds.MS.gene98059.t1;Parent=MS.gene98059.t1 |
| chr5.4 | exon | 36177847 | 36178450 | 36177847 | ID=MS.gene98059.t1.exon2;Parent=MS.gene98059.t1 |
| chr5.4 | CDS | 36177847 | 36178450 | 36177847 | ID=cds.MS.gene98059.t1;Parent=MS.gene98059.t1 |
| Gene Sequence |
| Protein sequence |
