AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98120.t1 MTR_4g005090 92.200 500 7 2 1 470 2 499 0.0 912
MS.gene98120.t1 MTR_2g081930 27.824 478 289 18 2 465 88 523 7.80e-32 128
MS.gene98120.t1 MTR_4g081490 27.083 432 256 16 50 470 63 446 6.57e-28 115
MS.gene98120.t1 MTR_2g081950 27.187 423 254 18 52 460 18 400 5.16e-25 107
MS.gene98120.t1 MTR_8g447340 26.190 462 270 18 27 470 112 520 7.66e-19 89.7
MS.gene98120.t1 MTR_3g098360 70.370 54 16 0 396 449 72 125 8.68e-19 82.8
MS.gene98120.t1 MTR_5g075300 22.318 466 293 15 28 459 47 477 3.40e-17 84.3
MS.gene98120.t1 MTR_7g446340 24.138 464 271 18 28 459 83 497 6.13e-17 83.6
MS.gene98120.t1 MTR_6g007340 24.138 464 271 18 28 459 83 497 6.13e-17 83.6
MS.gene98120.t1 MTR_4g072030 23.557 433 277 14 52 459 79 482 1.24e-15 79.7
MS.gene98120.t1 MTR_8g077890 22.926 458 300 15 28 459 47 477 3.16e-15 78.2
MS.gene98120.t1 MTR_2g049020 29.442 197 130 6 38 230 68 259 1.08e-14 77.0
MS.gene98120.t1 MTR_8g103500 24.213 413 240 13 28 409 46 416 4.99e-14 74.7
MS.gene98120.t1 MTR_3g084110 29.577 213 141 5 17 224 49 257 6.25e-14 74.3
MS.gene98120.t1 MTR_3g116240 22.294 462 298 12 28 459 56 486 1.44e-13 73.2
MS.gene98120.t1 MTR_7g082270 28.230 209 137 7 39 241 106 307 6.36e-13 71.2
MS.gene98120.t1 MTR_1g074940 24.086 465 268 21 42 457 72 500 7.25e-13 70.9
MS.gene98120.t1 MTR_6g088450 22.173 451 293 14 28 455 86 501 9.32e-13 70.5
MS.gene98120.t1 MTR_7g082270 26.374 182 115 4 39 211 106 277 1.01e-12 70.5
MS.gene98120.t1 MTR_4g069500 22.350 434 292 12 51 463 31 440 2.77e-12 68.9
MS.gene98120.t1 MTR_4g069500 22.350 434 292 12 51 463 81 490 3.34e-12 68.9
MS.gene98120.t1 MTR_1g116660 29.167 168 115 3 60 224 98 264 4.05e-12 68.6
MS.gene98120.t1 MTR_4g013205 28.643 199 118 5 39 228 77 260 4.19e-12 68.6
MS.gene98120.t1 MTR_6g087910 24.464 466 274 15 17 459 71 481 4.58e-12 68.6
MS.gene98120.t1 MTR_2g013310 24.631 203 139 4 28 226 8 200 2.84e-11 65.9
MS.gene98120.t1 MTR_7g005910 28.144 167 116 3 58 221 94 259 2.98e-11 65.9
MS.gene98120.t1 MTR_2g013310 25.989 177 127 3 28 200 81 257 3.46e-11 65.9
MS.gene98120.t1 MTR_7g094450 26.368 201 143 3 27 226 67 263 5.12e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98120.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene98120.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene98120.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene98120.t1 AT3G13050 66.518 448 145 4 24 466 47 494 0.0 540
MS.gene98120.t1 AT3G20660 27.391 460 266 17 25 468 107 514 2.97e-32 129
MS.gene98120.t1 AT3G18830 22.951 427 291 10 51 459 87 493 1.42e-17 85.9
MS.gene98120.t1 AT2G16130 24.464 466 289 15 28 462 54 487 9.62e-17 83.2
MS.gene98120.t1 AT1G67300 25.781 384 226 10 39 406 92 432 4.75e-16 80.9
MS.gene98120.t1 AT2G16120 24.406 463 287 15 28 459 54 484 8.22e-16 80.1
MS.gene98120.t1 AT1G73220 23.387 496 294 18 2 470 95 531 2.60e-15 78.6
MS.gene98120.t1 AT1G67300 25.849 383 226 10 39 406 92 431 2.97e-15 78.2
MS.gene98120.t1 AT1G67300 25.849 383 226 10 39 406 92 431 2.97e-15 78.2
MS.gene98120.t1 AT1G67300 25.849 383 226 10 39 406 92 431 3.29e-15 78.2
MS.gene98120.t1 AT1G67300 25.849 383 226 10 39 406 92 431 3.29e-15 78.2
MS.gene98120.t1 AT1G67300 25.936 374 219 10 39 397 92 422 6.88e-15 77.0
MS.gene98120.t1 AT1G67300 25.936 374 219 10 39 397 92 422 6.88e-15 77.0
MS.gene98120.t1 AT1G79820 28.740 254 142 9 39 280 95 321 1.10e-14 76.3
MS.gene98120.t1 AT1G79360 24.736 473 270 17 27 468 98 515 1.57e-14 76.3
MS.gene98120.t1 AT2G20780 24.318 440 252 18 51 459 106 495 4.83e-14 74.7
MS.gene98120.t1 AT1G79820 28.780 205 121 6 39 233 95 284 5.79e-14 74.3
MS.gene98120.t1 AT2G20780 24.318 440 252 18 51 459 48 437 7.31e-14 73.9
MS.gene98120.t1 AT1G79820 28.780 205 121 6 39 233 95 284 7.73e-14 73.9
MS.gene98120.t1 AT1G79820 28.780 205 121 6 39 233 95 284 7.73e-14 73.9
MS.gene98120.t1 AT1G79410 22.489 458 291 15 25 469 101 507 3.34e-13 72.0
MS.gene98120.t1 AT1G16390 26.190 462 260 19 24 462 101 504 1.17e-12 70.5
MS.gene98120.t1 AT2G18480 22.551 439 277 13 51 459 73 478 2.78e-11 65.9
MS.gene98120.t1 AT5G16150 26.380 163 116 3 39 198 146 307 7.52e-11 64.7
MS.gene98120.t1 AT5G16150 26.380 163 116 3 39 198 146 307 7.52e-11 64.7
MS.gene98120.t1 AT5G16150 26.380 163 116 3 39 198 146 307 7.52e-11 64.7
MS.gene98120.t1 AT2G43330 23.923 418 253 16 60 454 94 469 7.60e-11 64.7

Find 116 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGTTGACCTTGATAATT+TGG 0.146854 4.1:+89482878 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4.1:-89482869 MS.gene98120:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 4.1:-89481559 MS.gene98120:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4.1:+89482765 None:intergenic
AAAGGAATGATTTCTAATTT+AGG 0.203260 4.1:-89482933 MS.gene98120:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 4.1:+89484988 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 4.1:+89481500 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4.1:-89485288 MS.gene98120:intron
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4.1:-89484958 MS.gene98120:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4.1:-89484959 MS.gene98120:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 4.1:+89483030 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 4.1:-89483096 MS.gene98120:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 4.1:+89482498 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4.1:-89484964 MS.gene98120:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 4.1:-89483074 MS.gene98120:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 4.1:+89482936 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 4.1:+89482490 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 4.1:+89483125 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 4.1:+89482516 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.364080 4.1:+89484889 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 4.1:+89482478 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 4.1:+89482859 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 4.1:+89482739 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4.1:+89484989 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4.1:-89482868 MS.gene98120:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 4.1:-89481523 MS.gene98120:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 4.1:+89482879 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 4.1:-89483225 MS.gene98120:intron
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4.1:-89481655 MS.gene98120:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4.1:-89485101 MS.gene98120:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4.1:-89484952 MS.gene98120:CDS
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 4.1:-89481524 MS.gene98120:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4.1:+89485174 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 4.1:+89483134 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4.1:-89485066 MS.gene98120:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 4.1:+89482517 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 4.1:+89482740 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 4.1:+89482886 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 4.1:+89485107 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 4.1:+89483175 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 4.1:-89485354 None:intergenic
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 4.1:+89481507 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4.1:-89485100 MS.gene98120:CDS
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 4.1:+89483117 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 4.1:-89482887 MS.gene98120:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4.1:+89482766 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 4.1:-89482501 MS.gene98120:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 4.1:-89483125 MS.gene98120:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4.1:-89481652 MS.gene98120:CDS
GTAGCAGTGGGTTTAGTACA+TGG 0.523466 4.1:-89481613 MS.gene98120:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 4.1:+89483212 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4.1:-89484901 MS.gene98120:CDS
GCTACTGTTACTGCTACTGC+CGG 0.538066 4.1:-89485030 MS.gene98120:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 4.1:+89483174 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 4.1:+89481517 None:intergenic
TATGAAACTTTCTTGATGAG+AGG 0.540801 4.1:+89485146 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4.1:-89484894 MS.gene98120:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4.1:-89481664 MS.gene98120:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 4.1:+89482987 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4.1:-89484955 MS.gene98120:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 4.1:+89483170 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4.1:-89481635 MS.gene98120:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 4.1:-89481625 MS.gene98120:CDS
GATAGAATGTTAATGGGAGA+AGG 0.555946 4.1:+89482523 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 4.1:-89482951 MS.gene98120:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 4.1:-89482930 MS.gene98120:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 4.1:+89482590 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4.1:+89481669 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4.1:+89484895 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 4.1:-89481626 MS.gene98120:CDS
ACCGGAAAACATAACCATCC+AGG 0.567445 4.1:+89484876 None:intergenic
CTCCCAAACCAAGACCAACA+AGG 0.572336 4.1:+89484956 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4.1:+89484928 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 4.1:-89482591 MS.gene98120:CDS
GAGCTACAATTACAAACAGA+AGG 0.576404 4.1:+89481569 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4.1:-89485339 MS.gene98120:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 4.1:-89483224 MS.gene98120:CDS
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 4.1:+89482609 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4.1:+89485151 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 4.1:+89483169 None:intergenic
TCCCAAACCAAGACCAACAA+GGG 0.583537 4.1:+89484957 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 4.1:-89482601 MS.gene98120:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 4.1:-89483214 MS.gene98120:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 4.1:-89485099 MS.gene98120:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 4.1:+89481619 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4.1:-89481665 MS.gene98120:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4.1:-89485176 MS.gene98120:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4.1:-89481688 MS.gene98120:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 4.1:-89482741 MS.gene98120:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4.1:+89481687 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4.1:-89484933 MS.gene98120:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4.1:-89485074 MS.gene98120:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 4.1:+89482601 None:intergenic
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4.1:+89482811 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.612425 4.1:-89484890 MS.gene98120:CDS
ATTGTCAGAAATAAGGACAC+CGG 0.619613 4.1:+89483037 None:intergenic
TGACAACCCTTCAGAAGACA+CGG 0.630940 4.1:-89482994 MS.gene98120:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4.1:-89481682 MS.gene98120:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4.1:-89485078 MS.gene98120:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 4.1:-89482757 MS.gene98120:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4.1:+89481688 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4.1:+89482860 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 4.1:+89482988 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 4.1:+89483041 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 4.1:-89483220 MS.gene98120:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4.1:+89484894 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 4.1:-89485353 None:intergenic
ATAAATATACACGATTGTGA+AGG 0.658702 4.1:+89482443 None:intergenic
GCTTGCGACTCCGACACCGG+TGG 0.668961 4.1:+89481672 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 4.1:-89482433 MS.gene98120:intron
TCATCATGTCTACACATCGT+CGG 0.680005 4.1:+89481462 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 4.1:-89482502 MS.gene98120:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 4.1:+89484990 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 4.1:-89485352 None:intergenic
GCATAAAGACATTACCTCTG+GGG 0.717940 4.1:+89482419 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4.1:+89484918 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAATAAAGCAAATTA+TGG - chr4.1:89484828-89484847 MS.gene98120:intron 15.0%
!! ATATATAATTGAAAATATGG+TGG - chr4.1:89482090-89482109 MS.gene98120:intron 15.0%
!! ATTAGAACTAAATTAAATCA+AGG + chr4.1:89483160-89483179 None:intergenic 15.0%
!! TATAAGAAAAGATAGAAATA+TGG - chr4.1:89482229-89482248 MS.gene98120:intron 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG - chr4.1:89483247-89483266 MS.gene98120:intron 15.0%
!! TTTACAACTATTTAAATTGA+GGG + chr4.1:89483247-89483266 None:intergenic 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG + chr4.1:89483086-89483105 None:intergenic 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG + chr4.1:89484828-89484847 None:intergenic 15.0%
!!! TTAATTAATTTTGAATGATC+TGG - chr4.1:89484422-89484441 MS.gene98120:intron 15.0%
!! AAAGGAATGATTTCTAATTT+AGG - chr4.1:89483877-89483896 MS.gene98120:intron 20.0%
!! AAATTAAATCAAGGAGATTT+GGG + chr4.1:89483151-89483170 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG + chr4.1:89483877-89483896 None:intergenic 20.0%
!! AAGAATGTTATTATCTTAAG+GGG - chr4.1:89484608-89484627 MS.gene98120:intron 20.0%
!! AGAAGAATGTTATTATCTTA+AGG - chr4.1:89484606-89484625 MS.gene98120:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG - chr4.1:89484607-89484626 MS.gene98120:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG - chr4.1:89485056-89485075 MS.gene98120:CDS 20.0%
!! GTTTACAACTATTTAAATTG+AGG + chr4.1:89483248-89483267 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG + chr4.1:89483152-89483171 None:intergenic 20.0%
!! TAATTCTTCTTTATAAATGG+TGG - chr4.1:89485059-89485078 MS.gene98120:CDS 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG - chr4.1:89482611-89482630 MS.gene98120:CDS 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG + chr4.1:89484570-89484589 None:intergenic 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG + chr4.1:89482221-89482240 None:intergenic 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG - chr4.1:89484736-89484755 MS.gene98120:intron 20.0%
! AAATAAAGGCTTAAGCAAAT+TGG + chr4.1:89483072-89483091 None:intergenic 25.0%
! AACAAATTCCGTAAAAGAAT+TGG + chr4.1:89484747-89484766 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG - chr4.1:89484532-89484551 MS.gene98120:intron 25.0%
! AAGTATGTAAGGAAAGAATA+TGG - chr4.1:89482565-89482584 MS.gene98120:CDS 25.0%
! AATAGTTCCTATCTAATAAC+TGG + chr4.1:89484983-89485002 None:intergenic 25.0%
! AATATAGTGAGTAGTGAAAT+AGG - chr4.1:89482530-89482549 MS.gene98120:CDS 25.0%
! AATTCAAAAACAATGAGGTA+GGG + chr4.1:89484917-89484936 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG - chr4.1:89484682-89484701 MS.gene98120:intron 25.0%
! ATAAATATACACGATTGTGA+AGG + chr4.1:89484370-89484389 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG + chr4.1:89484504-89484523 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG + chr4.1:89483783-89483802 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG + chr4.1:89484922-89484941 None:intergenic 25.0%
! TAAAATTCTTTCTTGCATGA+AGG + chr4.1:89483217-89483236 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG - chr4.1:89484952-89484971 MS.gene98120:CDS 25.0%
! TAATTCAAAAACAATGAGGT+AGG + chr4.1:89484918-89484937 None:intergenic 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG - chr4.1:89482554-89482573 MS.gene98120:CDS 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG - chr4.1:89482612-89482631 MS.gene98120:CDS 25.0%
!! CAATGTGTTTTACTTAACAA+AGG - chr4.1:89482610-89482629 MS.gene98120:CDS 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG + chr4.1:89483654-89483673 None:intergenic 25.0%
!! TGAAAATATGGTGGAAATTA+GGG - chr4.1:89482099-89482118 MS.gene98120:intron 25.0%
!! TTCAAATTTTGAACTTACCT+AGG - chr4.1:89483090-89483109 MS.gene98120:CDS 25.0%
!! TTGAAAATATGGTGGAAATT+AGG - chr4.1:89482098-89482117 MS.gene98120:intron 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG + chr4.1:89483852-89483871 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG - chr4.1:89483976-89483995 MS.gene98120:intron 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG + chr4.1:89484864-89484883 None:intergenic 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG + chr4.1:89484565-89484584 None:intergenic 25.0%
AAATTAGGGTTAAGTGGTTT+GGG - chr4.1:89482113-89482132 MS.gene98120:intron 30.0%
AATATGGATCTCTTGAATCA+AGG - chr4.1:89482581-89482600 MS.gene98120:CDS 30.0%
AGTCAAATCACTATTTACAG+AGG - chr4.1:89482191-89482210 MS.gene98120:intron 30.0%
ATGATGTTACTCTCATTTGT+AGG - chr4.1:89481612-89481631 MS.gene98120:CDS 30.0%
GATGAAGCTCTTATAACATT+AGG - chr4.1:89481522-89481541 MS.gene98120:CDS 30.0%
GGAATGATTTCTAATTTAGG+TGG - chr4.1:89483880-89483899 MS.gene98120:intron 30.0%
GGCTAAATGATGAAAGTAAA+TGG + chr4.1:89483412-89483431 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG - chr4.1:89482482-89482501 MS.gene98120:CDS 30.0%
TATGAAACTTTCTTGATGAG+AGG + chr4.1:89481667-89481686 None:intergenic 30.0%
TGACAAATCATAGAGATGAT+GGG - chr4.1:89483540-89483559 MS.gene98120:intron 30.0%
TTACTTTCATCATTTAGCCT+AGG - chr4.1:89483413-89483432 MS.gene98120:intron 30.0%
! GCTCTTATAACATTAGGTTT+TGG - chr4.1:89481528-89481547 MS.gene98120:CDS 30.0%
! GTCTCATTTTGTTACATTTG+CGG + chr4.1:89482477-89482496 None:intergenic 30.0%
! TTATGGCTTTACTTGTCTTA+AGG - chr4.1:89483442-89483461 MS.gene98120:intron 30.0%
! TTGATATTAAGGCTTTGTCT+GGG - chr4.1:89482683-89482702 MS.gene98120:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG + chr4.1:89484016-89484035 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG - chr4.1:89482913-89482932 MS.gene98120:CDS 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG - chr4.1:89482751-89482770 MS.gene98120:CDS 30.0%
!! TTGTTTTACTATACCATTCC+CGG - chr4.1:89484139-89484158 MS.gene98120:intron 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG - chr4.1:89481684-89481703 MS.gene98120:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG + chr4.1:89482915-89482934 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG + chr4.1:89483853-89483872 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG - chr4.1:89484093-89484112 MS.gene98120:intron 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG + chr4.1:89483851-89483870 None:intergenic 30.0%
AAAACACTGCCCATAATAGA+AGG + chr4.1:89483954-89483973 None:intergenic 35.0%
AAACAAATGCAAACCATACC+TGG - chr4.1:89484879-89484898 MS.gene98120:CDS 35.0%
AAACACTGCCCATAATAGAA+GGG + chr4.1:89483953-89483972 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG + chr4.1:89483644-89483663 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG - chr4.1:89482488-89482507 MS.gene98120:CDS 35.0%
AACAAATTCAAGAAACCACG+AGG + chr4.1:89481895-89481914 None:intergenic 35.0%
AACAGAAGAAGGAAAGATGT+GGG + chr4.1:89483643-89483662 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG + chr4.1:89481662-89481681 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG + chr4.1:89481823-89481842 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG - chr4.1:89483942-89483961 MS.gene98120:intron 35.0%
AATGGCAAAAAACTTCCTTC+CGG - chr4.1:89483754-89483773 MS.gene98120:intron 35.0%
ACAAGCAAGGAGACATAATT+TGG + chr4.1:89481825-89481844 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG + chr4.1:89482785-89482804 None:intergenic 35.0%
ACCAAAACCCTTCAATATGT+AGG - chr4.1:89482774-89482793 MS.gene98120:CDS 35.0%
ACCTTTGTAACTTACATCCT+GGG + chr4.1:89484073-89484092 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG - chr4.1:89483859-89483878 MS.gene98120:intron 35.0%
AGTTGGTTAGTATTTGGATG+AGG - chr4.1:89482505-89482524 MS.gene98120:CDS 35.0%
ATATGCGAGCTCCAAATAAA+AGG + chr4.1:89484335-89484354 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG - chr4.1:89482788-89482807 MS.gene98120:CDS 35.0%
ATCGTGTATCATTGTAACAG+AGG + chr4.1:89482380-89482399 None:intergenic 35.0%
ATGTGTAGCCAACAATTAAC+TGG - chr4.1:89483309-89483328 MS.gene98120:intron 35.0%
ATTGTCAGAAATAAGGACAC+CGG + chr4.1:89483776-89483795 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG + chr4.1:89481824-89481843 None:intergenic 35.0%
CACAGAGAACTAACTTTGTA+AGG + chr4.1:89484786-89484805 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG + chr4.1:89482784-89482803 None:intergenic 35.0%
CAGACAAAGCCTTAATATCA+AGG + chr4.1:89482684-89482703 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG + chr4.1:89484296-89484315 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG - chr4.1:89483539-89483558 MS.gene98120:intron 35.0%
CTTTCGTCATGTATAAGACA+TGG - chr4.1:89485013-89485032 MS.gene98120:CDS 35.0%
GAAATTAGGGTTAAGTGGTT+TGG - chr4.1:89482112-89482131 MS.gene98120:intron 35.0%
GAGAAATCTTGTGCATTCTT+CGG - chr4.1:89484463-89484482 MS.gene98120:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG - chr4.1:89483736-89483755 MS.gene98120:intron 35.0%
GAGCTACAATTACAAACAGA+AGG + chr4.1:89485244-89485263 None:intergenic 35.0%
GATAGAATGTTAATGGGAGA+AGG + chr4.1:89484290-89484309 None:intergenic 35.0%
GCAATATCGCCTTGATATTA+AGG - chr4.1:89482672-89482691 MS.gene98120:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG + chr4.1:89481802-89481821 None:intergenic 35.0%
GTAAGCACCAATTAACATTC+CGG + chr4.1:89481706-89481725 None:intergenic 35.0%
TAAAGCCATAACAGTTTCCT+AGG + chr4.1:89483433-89483452 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG + chr4.1:89484297-89484316 None:intergenic 35.0%
TCCTTTCACCCAAATTATCA+AGG - chr4.1:89483923-89483942 MS.gene98120:intron 35.0%
TCTCTGTCTGCAATTTATCT+GGG + chr4.1:89484047-89484066 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG + chr4.1:89484395-89484414 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG + chr4.1:89484048-89484067 None:intergenic 35.0%
TTCTTGCATGAAGGAATGAT+AGG + chr4.1:89483208-89483227 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG - chr4.1:89483098-89483117 MS.gene98120:CDS 35.0%
TTGCATAAAGACATTACCTC+TGG + chr4.1:89484396-89484415 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG + chr4.1:89483696-89483715 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG - chr4.1:89483425-89483444 MS.gene98120:intron 35.0%
! AACTGAAGCAACTAACGTTT+TGG - chr4.1:89483714-89483733 MS.gene98120:intron 35.0%
! AAGAGGAGTTGGTTAGTATT+TGG - chr4.1:89482499-89482518 MS.gene98120:CDS 35.0%
! AAGGGTTGACCTTGATAATT+TGG + chr4.1:89483935-89483954 None:intergenic 35.0%
! ACCTTGATAATTTGGGTGAA+AGG + chr4.1:89483927-89483946 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG + chr4.1:89483934-89483953 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG + chr4.1:89483541-89483560 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG - chr4.1:89483955-89483974 MS.gene98120:intron 35.0%
! CTTGATATTAAGGCTTTGTC+TGG - chr4.1:89482682-89482701 MS.gene98120:intron 35.0%
! GAGTAATTTAAAGCCAGGTA+TGG + chr4.1:89484895-89484914 None:intergenic 35.0%
! GGTTTCACAGCAATGTTTTT+CGG - chr4.1:89485034-89485053 MS.gene98120:CDS 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG - chr4.1:89485251-89485270 MS.gene98120:intron 35.0%
! GTCTTTTGCCAGTTAATTGT+TGG + chr4.1:89483320-89483339 None:intergenic 35.0%
! GTTAATTGGTGCTTACTCAT+GGG - chr4.1:89481710-89481729 MS.gene98120:intron 35.0%
! GTTAATTGTTGGCTACACAT+AGG + chr4.1:89483309-89483328 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG - chr4.1:89481696-89481715 MS.gene98120:CDS 35.0%
! TCATTTTGTTACATTTGCGG+AGG + chr4.1:89482474-89482493 None:intergenic 35.0%
! TCCTACATATTGAAGGGTTT+TGG + chr4.1:89482778-89482797 None:intergenic 35.0%
! TGGTTATGTTTTCCGGTTTT+TGG - chr4.1:89481940-89481959 MS.gene98120:intron 35.0%
! TGTTAATTGGTGCTTACTCA+TGG - chr4.1:89481709-89481728 MS.gene98120:intron 35.0%
! TGTTTTACTATACCATTCCC+GGG - chr4.1:89484140-89484159 MS.gene98120:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG - chr4.1:89481711-89481730 MS.gene98120:intron 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG + chr4.1:89482646-89482665 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG - chr4.1:89482426-89482445 MS.gene98120:intron 35.0%
!! TCAAGTTTTATCGCACCAAA+TGG + chr4.1:89482300-89482319 None:intergenic 35.0%
!! TTGTTTCTGATCAACATGGA+AGG - chr4.1:89481736-89481755 MS.gene98120:intron 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG - chr4.1:89482644-89482663 MS.gene98120:intron 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG + chr4.1:89482910-89482929 None:intergenic 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG - chr4.1:89481977-89481996 MS.gene98120:intron 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG - chr4.1:89481976-89481995 MS.gene98120:intron 35.0%
AAAAACCTCCACACAAGATG+GGG + chr4.1:89482741-89482760 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG + chr4.1:89483638-89483657 None:intergenic 40.0%
AAGGGAACGAAAAACAAGCA+AGG + chr4.1:89481838-89481857 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG + chr4.1:89484155-89484174 None:intergenic 40.0%
ACACAGTATCTTGCAGTTCT+TGG + chr4.1:89485313-89485332 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG + chr4.1:89483110-89483129 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG + chr4.1:89484223-89484242 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG + chr4.1:89482743-89482762 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG - chr4.1:89483110-89483129 MS.gene98120:CDS 40.0%
AGTAAAACCGTGTCTTCTGA+AGG + chr4.1:89483826-89483845 None:intergenic 40.0%
ATATTGCACTCACCTTCCTT+TGG + chr4.1:89482659-89482678 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG + chr4.1:89483571-89483590 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG + chr4.1:89484323-89484342 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG - chr4.1:89483941-89483960 MS.gene98120:intron 40.0%
CACCTTTGTAACTTACATCC+TGG + chr4.1:89484074-89484093 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG + chr4.1:89482371-89482390 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG - chr4.1:89483685-89483704 MS.gene98120:intron 40.0%
CCTTTCAAGCATAGGTATCT+TGG + chr4.1:89483688-89483707 None:intergenic 40.0%
CTACGAGTTTAACTGCAAAC+TGG + chr4.1:89483003-89483022 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG + chr4.1:89482742-89482761 None:intergenic 40.0%
GATCAACATGGAAGGAGAAA+AGG - chr4.1:89481744-89481763 MS.gene98120:intron 40.0%
GCATAAAGACATTACCTCTG+GGG + chr4.1:89484394-89484413 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG + chr4.1:89484160-89484179 None:intergenic 40.0%
GGATCTCTTGAATCAAGGAA+AGG - chr4.1:89482586-89482605 MS.gene98120:CDS 40.0%
GGCATCAATCATACATTTCC+CGG + chr4.1:89484161-89484180 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG + chr4.1:89482982-89483001 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG - chr4.1:89484973-89484992 MS.gene98120:CDS 40.0%
GTAAAACCGTGTCTTCTGAA+GGG + chr4.1:89483825-89483844 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG + chr4.1:89482425-89482444 None:intergenic 40.0%
TCCCAGGATGTAAGTTACAA+AGG - chr4.1:89484069-89484088 MS.gene98120:intron 40.0%
TCTACACTAGGAGAGAAAAG+AGG - chr4.1:89482438-89482457 MS.gene98120:CDS 40.0%
TCTGCAAGGAACATTGCATT+GGG + chr4.1:89483570-89483589 None:intergenic 40.0%
TGCATGAAGGAATGATAGGA+AGG + chr4.1:89483204-89483223 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG - chr4.1:89482107-89482126 MS.gene98120:intron 40.0%
TGGTGGAATGTTATGTCCAT+TGG - chr4.1:89485175-89485194 MS.gene98120:CDS 40.0%
TGGTTGGATTTCAGAAGCAA+TGG - chr4.1:89481587-89481606 MS.gene98120:CDS 40.0%
TGTACCAACAGTCCAAAAAC+CGG + chr4.1:89481955-89481974 None:intergenic 40.0%
TTTATCGCACCAAATGGAGT+TGG + chr4.1:89482294-89482313 None:intergenic 40.0%
! ACCTGGATGGTTATGTTTTC+CGG - chr4.1:89481933-89481952 MS.gene98120:intron 40.0%
! ATTGTTGGCTACACATAGGA+AGG + chr4.1:89483305-89483324 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG - chr4.1:89484321-89484340 MS.gene98120:intron 40.0%
! GTAGCTCTGTGCACAAAATT+TGG + chr4.1:89484182-89484201 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG + chr4.1:89484900-89484919 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG - chr4.1:89482801-89482820 MS.gene98120:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG - chr4.1:89485185-89485204 MS.gene98120:intron 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG - chr4.1:89485287-89485306 MS.gene98120:intron 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG + chr4.1:89482964-89482983 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG - chr4.1:89481840-89481859 MS.gene98120:intron 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG + chr4.1:89482960-89482979 None:intergenic 40.0%
!! GGCATTGTTTCTGATCAACA+TGG - chr4.1:89481732-89481751 MS.gene98120:intron 40.0%
!! TTCTGAAATCCAACCAATGC+CGG + chr4.1:89481583-89481602 None:intergenic 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG - chr4.1:89481948-89481967 MS.gene98120:intron 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG + chr4.1:89484962-89484981 None:intergenic 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG - chr4.1:89482640-89482659 MS.gene98120:intron 40.0%
ACCAAATGGAGTTGGCTACA+TGG + chr4.1:89482286-89482305 None:intergenic 45.0%
ACCATCCAGGTACCTCTATT+AGG + chr4.1:89481924-89481943 None:intergenic 45.0%
ACCGGAAAACATAACCATCC+AGG + chr4.1:89481937-89481956 None:intergenic 45.0%
ACTAAACCCACTGCTACCAA+TGG + chr4.1:89485194-89485213 None:intergenic 45.0%
ACTCAGAGGTCAGCAAAACA+AGG + chr4.1:89484002-89484021 None:intergenic 45.0%
ATACTCGTTCTCGTTTACGC+CGG - chr4.1:89481561-89481580 MS.gene98120:CDS 45.0%
ATGACAGGGGAAGAAGTTGA+AGG - chr4.1:89481471-89481490 MS.gene98120:CDS 45.0%
CAGATTGTGATGCCAAGACT+GGG - chr4.1:89483586-89483605 MS.gene98120:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG - chr4.1:89484377-89484396 MS.gene98120:intron 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG - chr4.1:89482695-89482714 MS.gene98120:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG + chr4.1:89483639-89483658 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG - chr4.1:89483119-89483138 MS.gene98120:CDS 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG + chr4.1:89482955-89482974 None:intergenic 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG - chr4.1:89482707-89482726 MS.gene98120:intron 45.0%
TCAGAAATAAGGACACCGGA+AGG + chr4.1:89483772-89483791 None:intergenic 45.0%
TCCATGTAGCCAACTCCATT+TGG - chr4.1:89482282-89482301 MS.gene98120:intron 45.0%
TCCCAAACCAAGACCAACAA+GGG + chr4.1:89481856-89481875 None:intergenic 45.0%
TCTGCCTGAAGACCTAACAA+CGG - chr4.1:89484308-89484327 MS.gene98120:intron 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG - chr4.1:89482700-89482719 MS.gene98120:intron 45.0%
TCTTGGCATCACAATCTGCA+AGG + chr4.1:89483584-89483603 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG - chr4.1:89483816-89483835 MS.gene98120:intron 45.0%
TGTAGGAAACGTGTTGAAGG+AGG - chr4.1:89482791-89482810 MS.gene98120:CDS 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG - chr4.1:89482706-89482725 MS.gene98120:intron 45.0%
TTCCATGCAGATTGAACTGC+AGG + chr4.1:89481639-89481658 None:intergenic 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG - chr4.1:89482708-89482727 MS.gene98120:intron 45.0%
TTTGTTCCCGCTCCTAATAG+AGG - chr4.1:89481909-89481928 MS.gene98120:intron 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG - chr4.1:89482163-89482182 MS.gene98120:intron 45.0%
! ATTTTGTGCACAGAGCTACC+TGG - chr4.1:89484183-89484202 MS.gene98120:intron 45.0%
! CATAGGTATCTTGGTGACTC+TGG + chr4.1:89483679-89483698 None:intergenic 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG - chr4.1:89482800-89482819 MS.gene98120:CDS 45.0%
! GTAGCAGTGGGTTTAGTACA+TGG - chr4.1:89485197-89485216 MS.gene98120:intron 45.0%
! GTTATGTCCATTGGTAGCAG+TGG - chr4.1:89485184-89485203 MS.gene98120:intron 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG - chr4.1:89485286-89485305 MS.gene98120:intron 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG - chr4.1:89482690-89482709 MS.gene98120:intron 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG - chr4.1:89481846-89481865 MS.gene98120:intron 45.0%
! TTTTGTGCACAGAGCTACCT+GGG - chr4.1:89484184-89484203 MS.gene98120:intron 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG + chr4.1:89482961-89482980 None:intergenic 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG - chr4.1:89481852-89481871 MS.gene98120:intron 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG - chr4.1:89481920-89481939 MS.gene98120:intron 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG - chr4.1:89481851-89481870 MS.gene98120:intron 45.0%
!! TATATATATAATTGAAAATA+TGG - chr4.1:89482087-89482106 MS.gene98120:intron 5.0%
AGAAACCACGAGGACAAGAC+AGG + chr4.1:89481885-89481904 None:intergenic 50.0%
AGCTCAGTGGGTAGAATTGG+TGG - chr4.1:89485158-89485177 MS.gene98120:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG + chr4.1:89482950-89482969 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG + chr4.1:89485306-89485325 None:intergenic 50.0%
ATTGCAGACAGAGAAGTCCC+AGG - chr4.1:89484053-89484072 MS.gene98120:intron 50.0%
CAGGTACCTCTATTAGGAGC+GGG + chr4.1:89481918-89481937 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG + chr4.1:89482339-89482358 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG + chr4.1:89481919-89481938 None:intergenic 50.0%
CTCCCAAACCAAGACCAACA+AGG + chr4.1:89481857-89481876 None:intergenic 50.0%
CTGCCTGAAGACCTAACAAC+GGG - chr4.1:89484309-89484328 MS.gene98120:intron 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG - chr4.1:89482701-89482720 MS.gene98120:intron 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG + chr4.1:89482951-89482970 None:intergenic 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG - chr4.1:89485155-89485174 MS.gene98120:CDS 50.0%
GCAGATTGTGATGCCAAGAC+TGG - chr4.1:89483585-89483604 MS.gene98120:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG - chr4.1:89484219-89484238 MS.gene98120:intron 50.0%
GCTACTGTTACTGCTACTGC+CGG - chr4.1:89481780-89481799 MS.gene98120:intron 50.0%
GGCTACACATAGGAAGGAAG+TGG + chr4.1:89483299-89483318 None:intergenic 50.0%
GTCCTGCAGTTCAATCTGCA+TGG - chr4.1:89481634-89481653 MS.gene98120:CDS 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG - chr4.1:89482699-89482718 MS.gene98120:intron 50.0%
GTGTAGATCCCCATCTTGTG+TGG - chr4.1:89482730-89482749 MS.gene98120:CDS 50.0%
TAGATCCCCATCTTGTGTGG+AGG - chr4.1:89482733-89482752 MS.gene98120:CDS 50.0%
TCTTGGCCCATGGTCTCAAA+CGG + chr4.1:89485296-89485315 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG + chr4.1:89482952-89482971 None:intergenic 50.0%
TTGTGATGCCAAGACTGGGT+TGG - chr4.1:89483590-89483609 MS.gene98120:intron 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG - chr4.1:89481855-89481874 MS.gene98120:intron 50.0%
AGCCATCTCCAACCCAGTCT+TGG + chr4.1:89483601-89483620 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG + chr4.1:89484315-89484334 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG - chr4.1:89485122-89485141 MS.gene98120:CDS 55.0%
GTTCTCGTTTACGCCGGCAT+TGG - chr4.1:89481567-89481586 MS.gene98120:CDS 55.0%
TCAGTCAGAACCACCGGTGT+CGG - chr4.1:89485128-89485147 MS.gene98120:CDS 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG - chr4.1:89483596-89483615 MS.gene98120:intron 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG + chr4.1:89485126-89485145 None:intergenic 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG - chr4.1:89481916-89481935 MS.gene98120:intron 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG + chr4.1:89485125-89485144 None:intergenic 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG - chr4.1:89481858-89481877 MS.gene98120:intron 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG - chr4.1:89481571-89481590 MS.gene98120:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG + chr4.1:89484212-89484231 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG - chr4.1:89484209-89484228 MS.gene98120:intron 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG - chr4.1:89485146-89485165 MS.gene98120:CDS 60.0%
TGAGCTTGCGACTCCGACAC+CGG + chr4.1:89485144-89485163 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG - chr4.1:89485145-89485164 MS.gene98120:CDS 60.0%
ACGGCTGACAAGAGGAGCCC+AGG + chr4.1:89484204-89484223 None:intergenic 65.0%
GCGGTCCTGTCTTGTCCTCG+TGG - chr4.1:89481877-89481896 MS.gene98120:intron 65.0%
GCTTGCGACTCCGACACCGG+TGG + chr4.1:89485141-89485160 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 89481471 89485361 89481471 ID=MS.gene98120
chr4.1 mRNA 89481471 89485361 89481471 ID=MS.gene98120.t1;Parent=MS.gene98120
chr4.1 exon 89485289 89485361 89485289 ID=MS.gene98120.t1.exon1;Parent=MS.gene98120.t1
chr4.1 CDS 89485289 89485361 89485289 ID=cds.MS.gene98120.t1;Parent=MS.gene98120.t1
chr4.1 exon 89484834 89485198 89484834 ID=MS.gene98120.t1.exon2;Parent=MS.gene98120.t1
chr4.1 CDS 89484834 89485198 89484834 ID=cds.MS.gene98120.t1;Parent=MS.gene98120.t1
chr4.1 exon 89482718 89483243 89482718 ID=MS.gene98120.t1.exon3;Parent=MS.gene98120.t1
chr4.1 CDS 89482718 89483243 89482718 ID=cds.MS.gene98120.t1;Parent=MS.gene98120.t1
chr4.1 exon 89482434 89482636 89482434 ID=MS.gene98120.t1.exon4;Parent=MS.gene98120.t1
chr4.1 CDS 89482434 89482636 89482434 ID=cds.MS.gene98120.t1;Parent=MS.gene98120.t1
chr4.1 exon 89481471 89481716 89481471 ID=MS.gene98120.t1.exon5;Parent=MS.gene98120.t1
chr4.1 CDS 89481471 89481716 89481471 ID=cds.MS.gene98120.t1;Parent=MS.gene98120.t1
Gene Sequence

>MS.gene98120

ATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTATGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGGTAAATTCATTATCTTTGTCTGTTTCTTCATTCATTGCATTGAAAGATTAAAATCTACTTGTTAATGTTTTTTTTTTTTTTTTTTATATATATATATAATTGAAAATATGGTGGAAATTAGGGTTAAGTGGTTTGGGCATGTAGAGAAGAATTATAGATTCTGTAGCAAAGAGAGCAGTTCTGATGGAGAATAGTCAAATCACTATTTACAGAGGAAGACCAAGAAAAAGTATAAGAAAAGATAGAAATATGGTTTATGATAGAACATTATAGCATAACTTGATCCATGTAGCCAACTCCATTTGGTGCGATAAAACTTGATTGTTCTTGTTTCTTTCCTAGCTTTGCACGCAGTTCATGATCTGTTTTCCTAGCTTTCCTCTGTTACAATGATACACGATAGACATACATATTGATTGTAAACCAGTACTTAAGAGTGTCTACACTAGGAGAGAAAAGAGGATAACTGACACCTCCGCAAATGTAACAAAATGAGACATAAGAGGAGTTGGTTAGTATTTGGATGAGGTTAATATAGTGAGTAGTGAAATAGGTAGAAACAGAAAAAGTATGTAAGGAAAGAATATGGATCTCTTGAATCAAGGAAAGGTCAATGTGTTTTACTTAACAAAGGGGTGTATGTGCCATTTTAGAACACCAAAGGAAGGTGAGTGCAATATCGCCTTGATATTAAGGCTTTGTCTGGGTGTTTGGAAAGGAAGGGGAAAGGGGTGTAGATCCCCATCTTGTGTGGAGGTTTTTCTTTTTTCATTGGACCAAAACCCTTCAATATGTAGGAAACGTGTTGAAGGAGGATTTTGAGGGTTTTGAATAAATCTATAAATCATTTTCATCTCTTTATAATACTCTCAAATCAAAGAAAATATTAGCAATATGCATGCTCTCATCCTCTCCAAAAGTACTCTTCAAAGTAAGGTGAAAGATGCTCCCCTCCTTTCCCTCCTAACACTCAAACAAAGCCTAGATGATTCAAATCTCAGCCAGTTTGCAGTTAAACTCGTAGTTATAATGTTAACTTTATTTGTTTGTTGCGAGAGCTATGTATATTTCCAATTTGCTTAAGCCTTTATTTCAAATTTTGAACTTACCTAGGATTCAAGGTCTAAGTGTAGGAGAATCAGGAGATATCCCAAATCTCCTTGATTTAATTTAGTTCTAATTTCAGATGTTATTTATTATTTCCTTCCTATCATTCCTTCATGCAAGAAAGAATTTTATTGTGATCCCTCAATTTAAATAGTTGTAAACGGCTAAATTAATTACAAAAAGCATTTTGCCACTTCCTTCCTATGTGTAGCCAACAATTAACTGGCAAAAGACTTAAGTAATGTATAACGTGACAGAAATTGTAAATTTTCTTTTTATTACGAAAATACAATCGCTAAAGAACCATTTACTTTCATCATTTAGCCTAGGAAACTGTTATGGCTTTACTTGTCTTAAGGAATATATCTAAACTTTTACTAATCTTGCTAATGTTCTGTCAATGCAATGTAACGTTTCTATCTCTGTTGAATACCTGACAAATCATAGAGATGATGGGTTCACCCAATGCAATGTTCCTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGGTATGTTTACTACTGATTTCAGAATTGTTTTACTATACCATTCCCGGGAAATGTATGATTGATGCCAAATTTTGTGCACAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGGTAATGTCTTTATGCAATATATTTTAATTAATTTTGAATGATCTGGTTGAAGCAGAGTTTTTGAGAGAAATCTTGTGCATTCTTCGGTAGAAAGAAGCTAAACCTATTCTATACTGTTGTTGAATATTAAGATAAGTACTATTGTATAGCAATTGGTAAAAGTCCAATCCAATAAGACTACTAAAATATGAAGCTTCTGCATCAATAAGAAGAATGTTATTATCTTAAGGGGTTGCTAACACGTGTCTTAAGAGCATATAATGCAAAATATCAATTAAAAAGTACAGCATTATTAACTTCAAATGGTGTATTTTTCGTGAAACATTTATGTGTTTTATTTCTTAACCAATTCTTTTACGGAATTTGTTAGCATTTGCATTATTTCCTTACAAAGTTAGTTCTCTGTGTTTGTTACATAGAAGTGCTCCTAGAAAAAATAAAGCAAATTATGGATGAACTAGTCCTCTTTAAGAATTGTCAAAACAAATGCAAACCATACCTGGCTTTAAATTACTCCCTACCTCATTGTTTTTGAATTAACTGTTAAAACTATTAAGTTACCACAAAGAAAAAAGGTCTCACCAGTTATTAGATAGGAACTATTCGTTTATATACTTTCGTCATGTATAAGACATGGTTTCACAGCAATGTTTTTCGGTCTAATTCTTCTTTATAAATGGTGGAAGTTAACATGTGCAAGATTTATATGAACTGCAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACATGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>MS.gene98120.t1

MTGEEVEGSSSSSSYTVDEALITLGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVMFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV