AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98404

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98404.t1 MTR_2g046030 94.885 391 17 1 1 391 1 388 0.0 759
MS.gene98404.t1 MTR_2g045980 94.118 391 20 1 1 391 1 388 0.0 749
MS.gene98404.t1 MTR_3g018740 68.622 392 118 2 1 391 1 388 0.0 523
MS.gene98404.t1 MTR_3g101010 67.775 391 120 2 1 389 1 387 2.83e-179 504
MS.gene98404.t1 MTR_8g027395 64.858 387 130 3 3 389 15 395 1.19e-174 493
MS.gene98404.t1 MTR_4g045707 64.083 387 133 3 4 389 5 386 2.71e-171 484
MS.gene98404.t1 MTR_3g048000 61.240 387 127 4 6 391 28 392 1.26e-162 462
MS.gene98404.t1 MTR_8g027420 61.757 387 131 3 3 389 4 373 5.02e-161 457
MS.gene98404.t1 MTR_3g101030 59.250 400 137 6 10 389 34 427 1.09e-157 451
MS.gene98404.t1 MTR_8g461160 60.305 393 146 3 5 391 6 394 1.18e-157 449
MS.gene98404.t1 MTR_4g088535 60.309 388 130 4 1 386 1 366 3.03e-154 440
MS.gene98404.t1 MTR_4g088525 61.202 366 136 2 24 389 8 367 1.29e-152 436
MS.gene98404.t1 MTR_3g101130 58.163 392 149 5 4 389 5 387 1.76e-151 433
MS.gene98404.t1 MTR_3g101180 57.711 402 153 6 1 389 1 398 5.55e-151 432
MS.gene98404.t1 MTR_7g050810 57.215 395 157 4 3 390 14 403 3.69e-148 426
MS.gene98404.t1 MTR_7g050750 56.709 395 159 4 3 390 6 395 2.28e-147 423
MS.gene98404.t1 MTR_7g451890 55.102 392 166 3 5 390 14 401 6.68e-145 417
MS.gene98404.t1 MTR_7g047780 55.949 395 162 4 3 390 12 401 4.61e-144 415
MS.gene98404.t1 MTR_3g101050 59.432 387 130 8 8 389 32 396 8.52e-143 412
MS.gene98404.t1 MTR_2g046410 74.545 275 25 2 117 391 120 349 1.91e-140 404
MS.gene98404.t1 MTR_3g015620 56.378 392 137 5 5 390 16 379 1.07e-135 393
MS.gene98404.t1 MTR_3g102920 56.250 384 122 8 12 389 65 408 1.22e-125 369
MS.gene98404.t1 MTR_3g101190 50.133 375 122 4 15 389 1 310 3.97e-117 343
MS.gene98404.t1 MTR_3g101200 49.235 392 164 7 3 389 29 390 3.17e-114 338
MS.gene98404.t1 MTR_3g100995 61.004 259 94 3 133 390 11 263 5.96e-110 323
MS.gene98404.t1 MTR_3g018747 63.774 265 76 4 129 391 9 255 5.54e-109 320
MS.gene98404.t1 MTR_3g100010 52.532 316 98 3 28 310 40 336 2.82e-101 304
MS.gene98404.t1 MTR_7g050830 49.216 319 125 4 5 301 16 319 1.01e-96 291
MS.gene98404.t1 MTR_3g111160 66.216 222 69 3 170 389 1 218 4.09e-91 273
MS.gene98404.t1 MTR_3g015760 58.271 266 101 4 128 390 22 280 1.53e-90 274
MS.gene98404.t1 MTR_3g100520 60.181 221 73 3 170 389 1 207 1.01e-85 259
MS.gene98404.t1 MTR_3g099970 61.000 200 57 3 129 328 20 198 6.05e-75 231
MS.gene98404.t1 MTR_3g114310 38.191 398 221 13 6 388 20 407 1.72e-74 238
MS.gene98404.t1 MTR_3g101110 51.440 243 82 5 129 365 68 280 2.14e-70 223
MS.gene98404.t1 MTR_3g111150 57.062 177 52 2 7 183 1 153 9.74e-61 194
MS.gene98404.t1 MTR_3g102870 63.462 156 53 1 192 347 1 152 4.44e-60 192
MS.gene98404.t1 MTR_3g101020 52.381 189 59 3 203 390 1 159 7.08e-58 186
MS.gene98404.t1 MTR_3g101150 58.385 161 57 3 235 389 1 157 7.28e-54 176
MS.gene98404.t1 MTR_3g100990 63.910 133 48 0 1 133 1 133 3.48e-47 168
MS.gene98404.t1 MTR_4g093550 57.471 87 37 0 2 88 3 89 8.53e-26 100
MS.gene98404.t1 MTR_6g046890 62.025 79 20 2 23 91 17 95 3.00e-19 84.0
MS.gene98404.t1 MTR_3g101140 55.224 67 27 1 326 389 48 114 1.98e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98404.t1 AT1G47710 50.254 394 187 5 1 389 1 390 1.08e-134 391
MS.gene98404.t1 AT1G47710 50.254 394 187 5 1 389 28 417 9.45e-134 389
MS.gene98404.t1 AT3G45220 45.477 398 199 6 1 388 1 390 1.95e-114 339
MS.gene98404.t1 AT2G26390 44.888 401 193 9 1 388 1 386 5.20e-110 328
MS.gene98404.t1 AT2G25240 45.340 397 193 9 1 388 1 382 5.68e-110 328
MS.gene98404.t1 AT1G62170 40.650 369 186 5 27 388 89 431 1.17e-91 282
MS.gene98404.t1 AT2G35580 39.899 396 205 9 1 388 1 371 1.79e-88 272
MS.gene98404.t1 AT2G14540 40.967 393 199 8 3 388 31 397 2.27e-88 273
MS.gene98404.t1 AT1G64030 40.201 398 201 10 1 388 1 371 7.08e-86 266
MS.gene98404.t1 AT1G62170 37.313 402 186 6 27 388 89 464 1.31e-84 265
MS.gene98404.t1 AT1G64010 45.909 220 93 4 170 388 1 195 3.27e-60 194
MS.gene98404.t1 AT1G64010 44.878 205 87 4 185 388 2 181 2.86e-53 175
MS.gene98404.t1 AT1G63280 48.305 118 57 2 126 241 5 120 1.43e-29 111
MS.gene98404.t1 AT1G62160 38.916 203 92 5 192 388 42 218 1.88e-29 114
MS.gene98404.t1 AT1G51330 51.402 107 49 3 132 235 34 140 2.78e-22 94.0

Find 78 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAAGAAGTTCTTTAATA+AGG 0.302330 2.4:-44946701 None:intergenic
CGATAAGGCTGAGCACAATT+TGG 0.307568 2.4:-44946040 None:intergenic
CTCAGTCAAGGTTCCTTTCA+TGG 0.308297 2.4:+44946848 MS.gene98404:CDS
CCAAGATTCAATGTTTCATT+CGG 0.314871 2.4:+44947101 MS.gene98404:CDS
ACGGGAACAATCCTCTTTAT+CGG 0.322808 2.4:+44947386 MS.gene98404:CDS
TTCGTGTAGTAATTCATATT+TGG 0.330067 2.4:-44947024 None:intergenic
TTTGGTTAGTGATTGATTCT+TGG 0.347320 2.4:-44945938 None:intergenic
GGCGAAGGAGTTGAGATGAT+TGG 0.358690 2.4:-44946123 None:intergenic
GAAATATGTGAGAAACAAAA+AGG 0.360406 2.4:-44947220 None:intergenic
AGTAATGCATTGTACTTCAT+AGG 0.362177 2.4:+44946759 MS.gene98404:CDS
CAAGATTCAATGTTTCATTC+GGG 0.368803 2.4:+44947102 MS.gene98404:CDS
AAAATGGTGGATTCTCTTGC+GGG 0.387201 2.4:+44947191 MS.gene98404:CDS
ATCACGTACTATTTGTTTGA+AGG 0.408161 2.4:-44946252 None:intergenic
CTTCGTCTTCCTTATAGAAA+AGG 0.412080 2.4:+44946918 MS.gene98404:CDS
TGAAGGAAGGTTGAAGAGAA+AGG 0.413542 2.4:-44946235 None:intergenic
AACCACTCCTAACTCCTTCA+AGG 0.438432 2.4:-44947141 None:intergenic
AGTGATACCTTGAAGGAGTT+AGG 0.458142 2.4:+44947134 MS.gene98404:CDS
TGTCGAGGGAAACCTTTGTT+TGG 0.459015 2.4:-44945956 None:intergenic
GAAGGAAGGTTGAAGAGAAA+GGG 0.460189 2.4:-44946234 None:intergenic
GTGCTCAGCCTTATCGCTGC+TGG 0.467549 2.4:+44946047 MS.gene98404:CDS
CCGAATGAAACATTGAATCT+TGG 0.470101 2.4:-44947101 None:intergenic
GATGATTGGAGGATTTGAAC+CGG 0.477099 2.4:-44946109 None:intergenic
TGAGCACTTGTCCGATAAAG+AGG 0.478855 2.4:-44947397 None:intergenic
TTGTTTCAACAAGAGATGTC+TGG 0.480983 2.4:-44945982 None:intergenic
TTCTCTAATTAGAAACAAGA+AGG 0.481714 2.4:-44947357 None:intergenic
ATCTTCTTGCTTACCATGAA+AGG 0.484270 2.4:-44946861 None:intergenic
CTTCAGAACCAGCAGCGATA+AGG 0.486899 2.4:-44946055 None:intergenic
CGTACTATTTGTTTGAAGGA+AGG 0.504228 2.4:-44946248 None:intergenic
AAGGACGTTGCTCATGGTGG+TGG 0.504851 2.4:+44946170 MS.gene98404:CDS
AGCACAATTTGGAGTGATAG+TGG 0.506107 2.4:-44946029 None:intergenic
TGAAACTAGTGATACCTTGA+AGG 0.507113 2.4:+44947127 MS.gene98404:CDS
TGGTTAACTTCAAAGTTTAG+TGG 0.507541 2.4:-44947332 None:intergenic
AGCAGTAGCTGCAGCAACTT+CGG 0.517350 2.4:-44947276 None:intergenic
ATGCTGGCTGATCTATCAAC+TGG 0.520082 2.4:-44946729 None:intergenic
TCTAATTAGAGAAGATTTGA+CGG 0.520817 2.4:+44947367 MS.gene98404:CDS
CTAATTAGAGAAGATTTGAC+GGG 0.523712 2.4:+44947368 MS.gene98404:CDS
GTCATCTTCTCAACTAAAGC+TGG 0.525480 2.4:-44946999 None:intergenic
CTTATCGCTGCTGGTTCTGA+AGG 0.525511 2.4:+44946056 MS.gene98404:CDS
AACAACTAGTCAACTTCCTC+CGG 0.529390 2.4:+44946090 MS.gene98404:CDS
GAAGGAGTTGAGATGATTGG+AGG 0.529448 2.4:-44946120 None:intergenic
TACTGCTGCAAGGTTGAGCA+AGG 0.529910 2.4:+44947292 MS.gene98404:CDS
TTCATCAGAGTAAATGAAGA+AGG 0.535238 2.4:+44947251 MS.gene98404:CDS
TAGGACGGAATGGAGATAAG+AGG 0.535652 2.4:-44946144 None:intergenic
CTACTCAAGGACGTTGCTCA+TGG 0.538812 2.4:+44946164 MS.gene98404:CDS
CGCTTAGATCACTCATCAAG+AGG 0.541825 2.4:-44947422 None:intergenic
TTGACTAGTTGTTGTTGTGT+AGG 0.548661 2.4:-44946080 None:intergenic
GTTAGAAAATCAAGTGAAGC+CGG 0.559637 2.4:-44946290 None:intergenic
AGAGATGTCTGGCGATGTCG+AGG 0.560158 2.4:-44945971 None:intergenic
CGTCCTTGAGTAGGACGGAA+TGG 0.566952 2.4:-44946154 None:intergenic
CAATTGAAACAAGTGAAAGT+AGG 0.570247 2.4:+44947065 MS.gene98404:CDS
CAGTTTATTGAAGCATATGA+CGG 0.572175 2.4:+44946885 MS.gene98404:CDS
TCTCTAATTAGAAACAAGAA+GGG 0.572834 2.4:-44947356 None:intergenic
GTCAAACCTCCAGGAACGAA+TGG 0.572853 2.4:-44947167 None:intergenic
TGACTGAGGTTCCATTCAGA+AGG 0.578502 2.4:-44946833 None:intergenic
TGCATTACTAAAGATGATGC+TGG 0.584716 2.4:-44946745 None:intergenic
TCTCCATTCCGTCCTACTCA+AGG 0.586314 2.4:+44946151 MS.gene98404:CDS
TTGCTGCAGCTACTGCTGCA+AGG 0.592904 2.4:+44947282 MS.gene98404:CDS
TACCTTGAAGGAGTTAGGAG+TGG 0.601782 2.4:+44947139 MS.gene98404:CDS
CATCGACAAAAGAGAGGCGA+GGG 0.604715 2.4:-44946193 None:intergenic
CATTGTACTTCATAGGAGCA+TGG 0.605002 2.4:+44946766 MS.gene98404:CDS
CTCAAGGACGTTGCTCATGG+TGG 0.626502 2.4:+44946167 MS.gene98404:CDS
CATGAGCAACGTCCTTGAGT+AGG 0.628321 2.4:-44946163 None:intergenic
GGAATGGAGATAAGAGGCGA+AGG 0.632838 2.4:-44946138 None:intergenic
ATCAATCACTAACCAAACAA+AGG 0.635395 2.4:+44945944 MS.gene98404:CDS
TAATTAGAAACAAGAAGGGG+TGG 0.635445 2.4:-44947352 None:intergenic
TCTGAATGGAACCTCAGTCA+AGG 0.641904 2.4:+44946836 MS.gene98404:CDS
CTCTAATTAGAAACAAGAAG+GGG 0.642276 2.4:-44947355 None:intergenic
AGCAACGTCCTTGAGTAGGA+CGG 0.642446 2.4:-44946159 None:intergenic
GAGATGTCTGGCGATGTCGA+GGG 0.645815 2.4:-44945970 None:intergenic
GATTGGAGGATTTGAACCGG+AGG 0.649916 2.4:-44946106 None:intergenic
ATTAAAGAACTTCTTCCTCG+AGG 0.654402 2.4:+44946705 MS.gene98404:CDS
TTAACTTCAAAGTTTAGTGG+CGG 0.668795 2.4:-44947329 None:intergenic
CCATCGACAAAAGAGAGGCG+AGG 0.669374 2.4:-44946194 None:intergenic
GATCTATCAACTGGTCCTCG+AGG 0.670786 2.4:-44946720 None:intergenic
ACTGCTGCAAGGTTGAGCAA+GGG 0.682779 2.4:+44947293 MS.gene98404:CDS
ATACACCATCGACAAAAGAG+AGG 0.689392 2.4:-44946199 None:intergenic
TGATAGTTACAAAGCAACGC+CGG 0.690968 2.4:+44946271 MS.gene98404:CDS
CATGAAAGGAACCTTGACTG+AGG 0.722354 2.4:-44946847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTTACTTAATTGTA+GGG + chr2.4:44946407-44946426 MS.gene98404:intron 15.0%
!! AAAAAAAGTGAATTTATGGT+CGG + chr2.4:44946662-44946681 MS.gene98404:CDS 20.0%
!! AAATATGTTGCTAAATTAGT+CGG - chr2.4:44946592-44946611 None:intergenic 20.0%
!! TGACAAAAAAAGTGAATTTA+TGG + chr2.4:44946658-44946677 MS.gene98404:CDS 20.0%
!!! GATTTGATTTACTTAATTGT+AGG + chr2.4:44946406-44946425 MS.gene98404:intron 20.0%
! AGTAAATCAAATCACATAGA+AGG - chr2.4:44946399-44946418 None:intergenic 25.0%
! GAAATATGTGAGAAACAAAA+AGG - chr2.4:44947223-44947242 None:intergenic 25.0%
! TCTAATTAGAGAAGATTTGA+CGG + chr2.4:44947367-44947386 MS.gene98404:CDS 25.0%
! TCTCTAATTAGAAACAAGAA+GGG - chr2.4:44947359-44947378 None:intergenic 25.0%
! TGTTAATCAATGAAATAACC+TGG + chr2.4:44946354-44946373 MS.gene98404:intron 25.0%
! TTCGTGTAGTAATTCATATT+TGG - chr2.4:44947027-44947046 None:intergenic 25.0%
! TTCTCTAATTAGAAACAAGA+AGG - chr2.4:44947360-44947379 None:intergenic 25.0%
!! AAAATCACAGTTTTCTGTTT+TGG - chr2.4:44946811-44946830 None:intergenic 25.0%
!!! TGATGCTCTAAAATCATTTT+AGG - chr2.4:44946508-44946527 None:intergenic 25.0%
!!! TGTATTTGATGTGGTTTTAA+AGG + chr2.4:44946626-44946645 MS.gene98404:intron 25.0%
AATCAATGAAATAACCTGGT+TGG + chr2.4:44946358-44946377 MS.gene98404:intron 30.0%
AGTAATGCATTGTACTTCAT+AGG + chr2.4:44946759-44946778 MS.gene98404:CDS 30.0%
ATCAATCACTAACCAAACAA+AGG + chr2.4:44945944-44945963 MS.gene98404:CDS 30.0%
ATCACGTACTATTTGTTTGA+AGG - chr2.4:44946255-44946274 None:intergenic 30.0%
CAAGATTCAATGTTTCATTC+GGG + chr2.4:44947102-44947121 MS.gene98404:CDS 30.0%
CAATTGAAACAAGTGAAAGT+AGG + chr2.4:44947065-44947084 MS.gene98404:CDS 30.0%
CAGTTTATTGAAGCATATGA+CGG + chr2.4:44946885-44946904 MS.gene98404:CDS 30.0%
CCAAGATTCAATGTTTCATT+CGG + chr2.4:44947101-44947120 MS.gene98404:CDS 30.0%
CTAATTAGAGAAGATTTGAC+GGG + chr2.4:44947368-44947387 MS.gene98404:CDS 30.0%
CTCTAATTAGAAACAAGAAG+GGG - chr2.4:44947358-44947377 None:intergenic 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - chr2.4:44946704-44946723 None:intergenic 30.0%
GCTGATTATTGTATTTGATG+TGG + chr2.4:44946617-44946636 MS.gene98404:intron 30.0%
TGGTTAACTTCAAAGTTTAG+TGG - chr2.4:44947335-44947354 None:intergenic 30.0%
TTAACTTCAAAGTTTAGTGG+CGG - chr2.4:44947332-44947351 None:intergenic 30.0%
TTCATCAGAGTAAATGAAGA+AGG + chr2.4:44947251-44947270 MS.gene98404:CDS 30.0%
! GTATCTTGACCTTTTCTATA+AGG - chr2.4:44946930-44946949 None:intergenic 30.0%
! TTCACTTGATTTTCTAACCA+AGG + chr2.4:44946295-44946314 MS.gene98404:CDS 30.0%
! TTTGGTTAGTGATTGATTCT+TGG - chr2.4:44945941-44945960 None:intergenic 30.0%
ATCTTCTTGCTTACCATGAA+AGG - chr2.4:44946864-44946883 None:intergenic 35.0%
ATTAAAGAACTTCTTCCTCG+AGG + chr2.4:44946705-44946724 MS.gene98404:CDS 35.0%
CCGAATGAAACATTGAATCT+TGG - chr2.4:44947104-44947123 None:intergenic 35.0%
CGTACTATTTGTTTGAAGGA+AGG - chr2.4:44946251-44946270 None:intergenic 35.0%
CTTCGTCTTCCTTATAGAAA+AGG + chr2.4:44946918-44946937 MS.gene98404:CDS 35.0%
GTTAGAAAATCAAGTGAAGC+CGG - chr2.4:44946293-44946312 None:intergenic 35.0%
TAATTAGAAACAAGAAGGGG+TGG - chr2.4:44947355-44947374 None:intergenic 35.0%
TGAAACTAGTGATACCTTGA+AGG + chr2.4:44947127-44947146 MS.gene98404:CDS 35.0%
TGCATTACTAAAGATGATGC+TGG - chr2.4:44946748-44946767 None:intergenic 35.0%
TGCTTGAAAACTGTTAGAAG+AGG - chr2.4:44946568-44946587 None:intergenic 35.0%
TTGTTTCAACAAGAGATGTC+TGG - chr2.4:44945985-44946004 None:intergenic 35.0%
! AAACACTTTTGATGCAAAGC+AGG + chr2.4:44946452-44946471 MS.gene98404:intron 35.0%
! TGTGATTTTCACCTTCTGAA+TGG + chr2.4:44946822-44946841 MS.gene98404:CDS 35.0%
! TTGACTAGTTGTTGTTGTGT+AGG - chr2.4:44946083-44946102 None:intergenic 35.0%
! TTTTTGCCAAACGCAAAAGA+TGG + chr2.4:44946972-44946991 MS.gene98404:CDS 35.0%
!! AAAAATGGTGGATTCTCTTG+CGG + chr2.4:44947190-44947209 MS.gene98404:CDS 35.0%
!! GGTGAATAGTCTTATGCTAA+AGG - chr2.4:44946487-44946506 None:intergenic 35.0%
!!! CACAGTTTTCTGTTTTGGAA+AGG - chr2.4:44946806-44946825 None:intergenic 35.0%
AAACTGAGATATGCACACCT+TGG - chr2.4:44946315-44946334 None:intergenic 40.0%
AACAACTAGTCAACTTCCTC+CGG + chr2.4:44946090-44946109 MS.gene98404:CDS 40.0%
ACGGGAACAATCCTCTTTAT+CGG + chr2.4:44947386-44947405 MS.gene98404:CDS 40.0%
AGTGATACCTTGAAGGAGTT+AGG + chr2.4:44947134-44947153 MS.gene98404:CDS 40.0%
ATACACCATCGACAAAAGAG+AGG - chr2.4:44946202-44946221 None:intergenic 40.0%
CATTGTACTTCATAGGAGCA+TGG + chr2.4:44946766-44946785 MS.gene98404:CDS 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - chr2.4:44946237-44946256 None:intergenic 40.0%
GATGATTGGAGGATTTGAAC+CGG - chr2.4:44946112-44946131 None:intergenic 40.0%
GTCATCTTCTCAACTAAAGC+TGG - chr2.4:44947002-44947021 None:intergenic 40.0%
TCCTGGAGGTTTGACAAAAA+TGG + chr2.4:44947175-44947194 MS.gene98404:CDS 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - chr2.4:44946238-44946257 None:intergenic 40.0%
TGATAGTTACAAAGCAACGC+CGG + chr2.4:44946271-44946290 MS.gene98404:CDS 40.0%
TGGAGGTTTGACAAAAATGG+TGG + chr2.4:44947178-44947197 MS.gene98404:CDS 40.0%
TGGTCGGAAAAAGAGACAAT+TGG + chr2.4:44946678-44946697 MS.gene98404:CDS 40.0%
! AGCACAATTTGGAGTGATAG+TGG - chr2.4:44946032-44946051 None:intergenic 40.0%
! CTCTTTTGTCGATGGTGTAT+GGG + chr2.4:44946202-44946221 MS.gene98404:CDS 40.0%
! TCAAATCACATAGAAGGCAC+CGG - chr2.4:44946393-44946412 None:intergenic 40.0%
! TCTCTTTTGTCGATGGTGTA+TGG + chr2.4:44946201-44946220 MS.gene98404:CDS 40.0%
!! AAAATGGTGGATTCTCTTGC+GGG + chr2.4:44947191-44947210 MS.gene98404:CDS 40.0%
!! ACCATTTTTGTCAAACCTCC+AGG - chr2.4:44947179-44947198 None:intergenic 40.0%
AACCACTCCTAACTCCTTCA+AGG - chr2.4:44947144-44947163 None:intergenic 45.0%
CATGAAAGGAACCTTGACTG+AGG - chr2.4:44946850-44946869 None:intergenic 45.0%
CGATAAGGCTGAGCACAATT+TGG - chr2.4:44946043-44946062 None:intergenic 45.0%
CTCAGTCAAGGTTCCTTTCA+TGG + chr2.4:44946848-44946867 MS.gene98404:CDS 45.0%
GAAGGAGTTGAGATGATTGG+AGG - chr2.4:44946123-44946142 None:intergenic 45.0%
TACCTTGAAGGAGTTAGGAG+TGG + chr2.4:44947139-44947158 MS.gene98404:CDS 45.0%
TAGGACGGAATGGAGATAAG+AGG - chr2.4:44946147-44946166 None:intergenic 45.0%
TCTGAATGGAACCTCAGTCA+AGG + chr2.4:44946836-44946855 MS.gene98404:CDS 45.0%
TGACTGAGGTTCCATTCAGA+AGG - chr2.4:44946836-44946855 None:intergenic 45.0%
TGAGCACTTGTCCGATAAAG+AGG - chr2.4:44947400-44947419 None:intergenic 45.0%
TGTCGAGGGAAACCTTTGTT+TGG - chr2.4:44945959-44945978 None:intergenic 45.0%
! ACCTGGTTGGTACTATTTGC+CGG + chr2.4:44946371-44946390 MS.gene98404:intron 45.0%
! ATGCTGGCTGATCTATCAAC+TGG - chr2.4:44946732-44946751 None:intergenic 45.0%
! GTTTTACCATTCGTTCCTGG+AGG + chr2.4:44947161-44947180 MS.gene98404:CDS 45.0%
!! GTGGTTTTACCATTCGTTCC+TGG + chr2.4:44947158-44947177 MS.gene98404:CDS 45.0%
ACCGGCAAATAGTACCAACC+AGG - chr2.4:44946375-44946394 None:intergenic 50.0%
ACTGCTGCAAGGTTGAGCAA+GGG + chr2.4:44947293-44947312 MS.gene98404:CDS 50.0%
AGCAACGTCCTTGAGTAGGA+CGG - chr2.4:44946162-44946181 None:intergenic 50.0%
AGCAGTAGCTGCAGCAACTT+CGG - chr2.4:44947279-44947298 None:intergenic 50.0%
CATCGACAAAAGAGAGGCGA+GGG - chr2.4:44946196-44946215 None:intergenic 50.0%
CATGAGCAACGTCCTTGAGT+AGG - chr2.4:44946166-44946185 None:intergenic 50.0%
CTACTCAAGGACGTTGCTCA+TGG + chr2.4:44946164-44946183 MS.gene98404:CDS 50.0%
CTTCAGAACCAGCAGCGATA+AGG - chr2.4:44946058-44946077 None:intergenic 50.0%
GATCTATCAACTGGTCCTCG+AGG - chr2.4:44946723-44946742 None:intergenic 50.0%
GATTGGAGGATTTGAACCGG+AGG - chr2.4:44946109-44946128 None:intergenic 50.0%
GGAATGGAGATAAGAGGCGA+AGG - chr2.4:44946141-44946160 None:intergenic 50.0%
GGCGAAGGAGTTGAGATGAT+TGG - chr2.4:44946126-44946145 None:intergenic 50.0%
GTCAAACCTCCAGGAACGAA+TGG - chr2.4:44947170-44947189 None:intergenic 50.0%
TACTGCTGCAAGGTTGAGCA+AGG + chr2.4:44947292-44947311 MS.gene98404:CDS 50.0%
TCTCCATTCCGTCCTACTCA+AGG + chr2.4:44946151-44946170 MS.gene98404:CDS 50.0%
! GGCAGTCCATCTTTTGCGTT+TGG - chr2.4:44946981-44947000 None:intergenic 50.0%
!! CTTATCGCTGCTGGTTCTGA+AGG + chr2.4:44946056-44946075 MS.gene98404:CDS 50.0%
AAGGACGTTGCTCATGGTGG+TGG + chr2.4:44946170-44946189 MS.gene98404:CDS 55.0%
AGAGATGTCTGGCGATGTCG+AGG - chr2.4:44945974-44945993 None:intergenic 55.0%
CCATCGACAAAAGAGAGGCG+AGG - chr2.4:44946197-44946216 None:intergenic 55.0%
CGTCCTTGAGTAGGACGGAA+TGG - chr2.4:44946157-44946176 None:intergenic 55.0%
CTCAAGGACGTTGCTCATGG+TGG + chr2.4:44946167-44946186 MS.gene98404:CDS 55.0%
GAGATGTCTGGCGATGTCGA+GGG - chr2.4:44945973-44945992 None:intergenic 55.0%
TTGCTGCAGCTACTGCTGCA+AGG + chr2.4:44947282-44947301 MS.gene98404:CDS 55.0%
! CCTCGCCTCTCTTTTGTCGA+TGG + chr2.4:44946194-44946213 MS.gene98404:CDS 55.0%
! GTGCTCAGCCTTATCGCTGC+TGG + chr2.4:44946047-44946066 MS.gene98404:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 44945930 44947436 44945930 ID=MS.gene98404
chr2.4 mRNA 44945930 44947436 44945930 ID=MS.gene98404.t1;Parent=MS.gene98404
chr2.4 exon 44945930 44946316 44945930 ID=MS.gene98404.t1.exon1;Parent=MS.gene98404.t1
chr2.4 CDS 44945930 44946316 44945930 ID=cds.MS.gene98404.t1;Parent=MS.gene98404.t1
chr2.4 exon 44946648 44947436 44946648 ID=MS.gene98404.t1.exon2;Parent=MS.gene98404.t1
chr2.4 CDS 44946648 44947436 44946648 ID=cds.MS.gene98404.t1;Parent=MS.gene98404.t1
Gene Sequence

>MS.gene98404

ATGGCTCTCCAAGAATCAATCACTAACCAAACAAAGGTTTCCCTCGACATCGCCAGACATCTCTTGTTGAAACAATCAGACAAGAACGTCGTGTTTTCGCCACTATCACTCCAAATTGTGCTCAGCCTTATCGCTGCTGGTTCTGAAGGTCCTACACAACAACAACTAGTCAACTTCCTCCGGTTCAAATCCTCCAATCATCTCAACTCCTTCGCCTCTTATCTCCATTCCGTCCTACTCAAGGACGTTGCTCATGGTGGTGGCCCTCGCCTCTCTTTTGTCGATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAACAAATAGTACGTGATAGTTACAAAGCAACGCCGGCTTCACTTGATTTTCTAACCAAGGTGTGCATATCTCAGTTTTTTTTTTCTTTTTTCTTTCTGTTAATCAATGAAATAACCTGGTTGGTACTATTTGCCGGTGCCTTCTATGTGATTTGATTTACTTAATTGTAGGGTTACTTTAGTTGCTTCGCGTGCAAACACTTTTGATGCAAAGCAGGATGTATTATCCTTTAGCATAAGACTATTCACCTAAAATGATTTTAGAGCATCAATCAACTTCTATGAAAATAATTGACGAATACAACTTTCCTCTTCTAACAGTTTTCAAGCATCCGACTAATTTAGCAACATATTTGCATAGCTGATTATTGTATTTGATGTGGTTTTAAAGGTTGTTGAAGTGACAAAAAAAGTGAATTTATGGTCGGAAAAAGAGACAATTGGCCTTATTAAAGAACTTCTTCCTCGAGGACCAGTTGATAGATCAGCCAGCATCATCTTTAGTAATGCATTGTACTTCATAGGAGCATGGAATGAGAAATTCGACCTTTCCAAAACAGAAAACTGTGATTTTCACCTTCTGAATGGAACCTCAGTCAAGGTTCCTTTCATGGTAAGCAAGAAGATGCAGTTTATTGAAGCATATGACGGTTCTAAAGTTCTTCGTCTTCCTTATAGAAAAGGTCAAGATACGCGTCAATTCTCTATGTATATTTTTTTGCCAAACGCAAAAGATGGACTGCCAGCTTTAGTTGAGAAGATGACTTCCAAATATGAATTACTACACGAAAAGCTTAGTCTTTATGATCAATTGAAACAAGTGAAAGTAGGTGATTTTAAAATTCCAAGATTCAATGTTTCATTCGGGCTTGAAACTAGTGATACCTTGAAGGAGTTAGGAGTGGTTTTACCATTCGTTCCTGGAGGTTTGACAAAAATGGTGGATTCTCTTGCGGGTCGAAGCCTTTTTGTTTCTCACATATTTCACAAGTCTTTCATCAGAGTAAATGAAGAAGGTACCGAAGTTGCTGCAGCTACTGCTGCAAGGTTGAGCAAGGGTTGTTCATTTTCTCCGCCACTAAACTTTGAAGTTAACCACCCCTTCTTGTTTCTAATTAGAGAAGATTTGACGGGAACAATCCTCTTTATCGGACAAGTGCTCAATCCTCTTGATGAGTGA
Protein sequence

>MS.gene98404.t1

MALQESITNQTKVSLDIARHLLLKQSDKNVVFSPLSLQIVLSLIAAGSEGPTQQQLVNFLRFKSSNHLNSFASYLHSVLLKDVAHGGGPRLSFVDGVWVEQTLSLQPSFKQIVRDSYKATPASLDFLTKVVEVTKKVNLWSEKETIGLIKELLPRGPVDRSASIIFSNALYFIGAWNEKFDLSKTENCDFHLLNGTSVKVPFMVSKKMQFIEAYDGSKVLRLPYRKGQDTRQFSMYIFLPNAKDGLPALVEKMTSKYELLHEKLSLYDQLKQVKVGDFKIPRFNVSFGLETSDTLKELGVVLPFVPGGLTKMVDSLAGRSLFVSHIFHKSFIRVNEEGTEVAAATAARLSKGCSFSPPLNFEVNHPFLFLIREDLTGTILFIGQVLNPLDE