AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98497

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98497.t1 MTR_2g045490 99.432 352 2 0 1 352 1 352 0.0 725
MS.gene98497.t1 MTR_2g045490 99.430 351 2 0 1 351 1 351 0.0 723
MS.gene98497.t1 MTR_2g045490 99.145 351 3 0 1 351 1 351 0.0 722
MS.gene98497.t1 MTR_7g024460 84.726 347 52 1 6 351 14 360 0.0 617
MS.gene98497.t1 MTR_2g045490 99.628 269 1 0 84 352 2 270 0.0 556
MS.gene98497.t1 MTR_2g045490 99.627 268 1 0 84 351 2 269 0.0 554
MS.gene98497.t1 MTR_2g045490 99.597 248 1 0 104 351 1 248 0.0 512
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98497.t1 AT3G06483 77.557 352 74 2 1 351 1 348 0.0 568

Find 75 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAACAAAGGTTACCTTTA+TGG 0.120523 2.1:+45372719 None:intergenic
CGTCTATATGCTCGGTATTT+TGG 0.198289 2.1:-45372462 MS.gene98497:CDS
ATCAGCAACTATTATTCTTA+TGG 0.199738 2.1:+45372758 None:intergenic
AAATCTTGATTAATAATCTT+TGG 0.200792 2.1:+45373384 None:intergenic
TTAAGATACATGATGGATTT+TGG 0.201092 2.1:-45375046 MS.gene98497:CDS
TACTTCTTCTATCAAGCTTT+TGG 0.235373 2.1:+45375105 None:intergenic
GCAGAAATTAACAAATTCTT+TGG 0.245504 2.1:+45375010 None:intergenic
TCCAGCTCACTTGCATCTTA+TGG 0.267701 2.1:-45372853 MS.gene98497:CDS
ATCTTTCGCAGACCACTTCT+TGG 0.293648 2.1:+45372594 None:intergenic
ATAATCTCTATGGAAAATTA+TGG 0.310911 2.1:-45372426 MS.gene98497:CDS
TCAGCAACTATTATTCTTAT+GGG 0.330890 2.1:+45372759 None:intergenic
ACGACATGAGGAGGAGGATT+TGG 0.339129 2.1:+45373160 None:intergenic
AATCTTGATTAATAATCTTT+GGG 0.339663 2.1:+45373385 None:intergenic
TCTATATGCTCTCGTCAATA+TGG 0.352011 2.1:-45373073 MS.gene98497:CDS
CGATCTTCAAATAATCTCTA+TGG 0.354928 2.1:-45372436 MS.gene98497:CDS
CGAGCATATAGACGACTAAT+AGG 0.357508 2.1:+45372471 None:intergenic
TTCTGCACAGTTTCTTCATA+AGG 0.369524 2.1:-45374993 MS.gene98497:CDS
ATCGGAATCCGAATGCTTAT+AGG 0.370497 2.1:-45373318 MS.gene98497:intron
TTTGATTGTAGGTTAGAGAT+TGG 0.407781 2.1:-45373566 MS.gene98497:intron
TTGGATGAGCATGCCGATCT+TGG 0.411149 2.1:-45372537 MS.gene98497:CDS
GCCCCTGACGTACATATATA+CGG 0.411708 2.1:-45373046 MS.gene98497:CDS
AATAGTTGCTGATGGATTAG+AGG 0.424802 2.1:-45372748 MS.gene98497:CDS
GATAGAAGAAGTACACAAAT+GGG 0.426839 2.1:-45375095 MS.gene98497:CDS
TGGGGTTGTTTCAAACAAAC+TGG 0.432934 2.1:-45375076 MS.gene98497:CDS
ACAATGGCTGGATATGGATA+TGG 0.434648 2.1:-45372498 MS.gene98497:CDS
ATTAACAAATTCTTTGGAGT+TGG 0.435504 2.1:+45375016 None:intergenic
AATGGCTTTCTTTGCAGCCA+TGG 0.449337 2.1:+45375138 None:intergenic
ATTAGAGGATGTTACCATAA+AGG 0.451488 2.1:-45372733 MS.gene98497:intron
TGATAGAAGAAGTACACAAA+TGG 0.452397 2.1:-45375096 MS.gene98497:CDS
AATGTGACAATGGCTGGATA+TGG 0.453217 2.1:-45372504 MS.gene98497:CDS
AGCTCTTCTAGCAATTCTAA+TGG 0.455069 2.1:+45374964 None:intergenic
GCATCTTATGGTATTTGAGT+TGG 0.457285 2.1:-45372841 MS.gene98497:CDS
TCGCCGTATATATGTACGTC+AGG 0.457500 2.1:+45373043 None:intergenic
GGCATTGTAGATTTCGGATG+AGG 0.457844 2.1:-45372628 MS.gene98497:intron
TAGATTTCGGATGAGGGAGG+TGG 0.462557 2.1:-45372621 MS.gene98497:CDS
ACTATTATTCTTATGGGAGG+TGG 0.487057 2.1:+45372765 None:intergenic
ACTCACGGAAAAGTAAAATC+AGG 0.492192 2.1:+45373019 None:intergenic
GGCGATAATGTGACAATGGC+TGG 0.493309 2.1:-45372510 MS.gene98497:CDS
ACCATAAGATGCAAGTGAGC+TGG 0.502479 2.1:+45372852 None:intergenic
TATGGGAGGTGGATCATTGT+CGG 0.504518 2.1:+45372776 None:intergenic
TGAACACCTAAGGCCATTGT+AGG 0.507319 2.1:+45373429 None:intergenic
GGAACTAACCTATAAGCATT+CGG 0.507924 2.1:+45373310 None:intergenic
GTGGTACCTACAATGGCCTT+AGG 0.513887 2.1:-45373435 MS.gene98497:CDS
TTTCAACTGCTGAACACCTA+AGG 0.517968 2.1:+45373419 None:intergenic
AAGGGTACCTTCAAAACAGC+AGG 0.520162 2.1:+45374902 None:intergenic
GAAGAGCTGTTGAACTTGAA+AGG 0.525309 2.1:-45374949 MS.gene98497:CDS
GCATTCCTTGCTACCTCCAC+CGG 0.529975 2.1:+45373112 None:intergenic
CTATTAGTCGTCTATATGCT+CGG 0.538691 2.1:-45372470 MS.gene98497:CDS
GTAGGTTAGAGATTGGTACT+TGG 0.540755 2.1:-45373559 MS.gene98497:intron
TATAGAGCGTGCATCGTCAA+CGG 0.545656 2.1:+45373090 None:intergenic
TACAAGAATGTCTCCGGTGG+AGG 0.553472 2.1:-45373125 MS.gene98497:CDS
TATACATACAAGAATGTCTC+CGG 0.557684 2.1:-45373131 MS.gene98497:CDS
GAGCATGCCGATCTTGGAGT+TGG 0.560266 2.1:-45372531 MS.gene98497:CDS
ATTATCGCCAACTCCAAGAT+CGG 0.563220 2.1:+45372524 None:intergenic
TAGTACTGCTAGAAATCCAT+TGG 0.565118 2.1:-45372556 MS.gene98497:CDS
ATAAGAATAATAGTTGCTGA+TGG 0.570973 2.1:-45372756 MS.gene98497:CDS
GCATTGTAGATTTCGGATGA+GGG 0.576459 2.1:-45372627 MS.gene98497:intron
TGTGAGTTTAAGATACATGA+TGG 0.580924 2.1:-45375053 MS.gene98497:CDS
AGATCGGCATGCTCATCCAA+TGG 0.584157 2.1:+45372540 None:intergenic
TGTCTCCGGTGGAGGTAGCA+AGG 0.587639 2.1:-45373117 MS.gene98497:CDS
CGCCGTATATATGTACGTCA+GGG 0.587762 2.1:+45373044 None:intergenic
GCAACTATTATTCTTATGGG+AGG 0.606741 2.1:+45372762 None:intergenic
CAACAATGTGGTACCTACAA+TGG 0.612377 2.1:-45373442 MS.gene98497:CDS
AATCCTCCTCCTCATGTCGT+AGG 0.616981 2.1:-45373157 MS.gene98497:CDS
TTGTAGATTTCGGATGAGGG+AGG 0.626371 2.1:-45372624 MS.gene98497:intron
TAACCTACGACATGAGGAGG+AGG 0.635529 2.1:+45373154 None:intergenic
TGTATATAACCTACGACATG+AGG 0.637267 2.1:+45373148 None:intergenic
GGAGGTGGAATACCAAGAAG+TGG 0.641112 2.1:-45372606 MS.gene98497:CDS
CAGAAAAGGATCTAATATCG+CGG 0.669135 2.1:+45373529 None:intergenic
ACATACAAGAATGTCTCCGG+TGG 0.674423 2.1:-45373128 MS.gene98497:CDS
ATATAACCTACGACATGAGG+AGG 0.678302 2.1:+45373151 None:intergenic
GCCGTATATATGTACGTCAG+GGG 0.698307 2.1:+45373045 None:intergenic
ATAGAAGAAGTACACAAATG+GGG 0.700759 2.1:-45375094 MS.gene98497:CDS
AGTTGGCGATAATGTGACAA+TGG 0.719596 2.1:-45372514 MS.gene98497:CDS
AAAAGTGAGACACAACAATG+TGG 0.724994 2.1:-45373454 MS.gene98497:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTTGATTAATAATCTT+TGG + chr2.1:45374174-45374193 None:intergenic 15.0%
!! AATCTTGATTAATAATCTTT+GGG + chr2.1:45374173-45374192 None:intergenic 15.0%
!!! AATAGATATGTTTTTACAAT+AGG - chr2.1:45374674-45374693 MS.gene98497:intron 15.0%
!!! ATTAATAAAAAAGTGGTTTT+GGG - chr2.1:45373182-45373201 MS.gene98497:CDS 15.0%
!!! TATTAATAAAAAAGTGGTTT+TGG - chr2.1:45373181-45373200 MS.gene98497:CDS 15.0%
!!! TTCTAGTTTATTAATATTTG+TGG - chr2.1:45373247-45373266 MS.gene98497:intron 15.0%
!! AACATAAACAAATGAATTCA+TGG + chr2.1:45374578-45374597 None:intergenic 20.0%
!! ATAATCTCTATGGAAAATTA+TGG - chr2.1:45375129-45375148 MS.gene98497:CDS 20.0%
!! ATAATGTAGATTATTGCTTT+AGG - chr2.1:45373223-45373242 MS.gene98497:intron 20.0%
!! TTAAATTCAGTGATTCATTA+TGG - chr2.1:45373584-45373603 MS.gene98497:intron 20.0%
!!! ATTTGTTTATGTTTTATGCT+AGG - chr2.1:45374585-45374604 MS.gene98497:intron 20.0%
!!! TCATACACAGTTTTAAATAA+AGG + chr2.1:45373850-45373869 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG - chr2.1:45372958-45372977 MS.gene98497:intron 20.0%
!!! TTAATAAAAAAGTGGTTTTG+GGG - chr2.1:45373183-45373202 MS.gene98497:CDS 20.0%
!!! TTTGTTAATTAGTGTTTTTG+AGG - chr2.1:45372831-45372850 MS.gene98497:CDS 20.0%
!!! TTTTGTTTGTTTTAGTGTTT+TGG - chr2.1:45373116-45373135 MS.gene98497:CDS 20.0%
! AATCAAAAATAATAGTCCTC+CGG - chr2.1:45373529-45373548 MS.gene98497:CDS 25.0%
! AATGAAAAACACGCATAATA+AGG + chr2.1:45374338-45374357 None:intergenic 25.0%
! AGAGTTGAAACTATATTATC+CGG - chr2.1:45373495-45373514 MS.gene98497:CDS 25.0%
! ATAAGAATAATAGTTGCTGA+TGG - chr2.1:45374799-45374818 MS.gene98497:intron 25.0%
! ATCAGCAACTATTATTCTTA+TGG + chr2.1:45374800-45374819 None:intergenic 25.0%
! CAAAAACATGAATGATGAAA+AGG - chr2.1:45374053-45374072 MS.gene98497:intron 25.0%
! GCAGAAATTAACAAATTCTT+TGG + chr2.1:45372548-45372567 None:intergenic 25.0%
! TCAGCAACTATTATTCTTAT+GGG + chr2.1:45374799-45374818 None:intergenic 25.0%
! TGTTAAACCATATTTGCAAT+TGG - chr2.1:45373285-45373304 MS.gene98497:intron 25.0%
! TTTCCACAAAACAATCAAAA+GGG + chr2.1:45372674-45372693 None:intergenic 25.0%
!! AGCAGGAAATTTCAATTTTT+CGG + chr2.1:45373563-45373582 None:intergenic 25.0%
!! AGTAAAAAGTATGTAACTCA+CGG + chr2.1:45374554-45374573 None:intergenic 25.0%
!! GTTTATGTTGAAATGAGTTT+TGG - chr2.1:45372772-45372791 MS.gene98497:CDS 25.0%
!! GTTTTGTGGAAAGAAATAAT+GGG - chr2.1:45372682-45372701 MS.gene98497:intron 25.0%
!! TGTTTTGTGGAAAGAAATAA+TGG - chr2.1:45372681-45372700 MS.gene98497:intron 25.0%
!!! ATTAACAAATTCTTTGGAGT+TGG + chr2.1:45372542-45372561 None:intergenic 25.0%
!!! GACTATTATTTTTGATTGGT+TGG + chr2.1:45373526-45373545 None:intergenic 25.0%
!!! TAACATTCAAGTTTTGATGT+TGG + chr2.1:45373415-45373434 None:intergenic 25.0%
!!! TGCTACATTTTTTTGATTGT+AGG - chr2.1:45373978-45373997 MS.gene98497:intron 25.0%
!!! TTAAGATACATGATGGATTT+TGG - chr2.1:45372509-45372528 MS.gene98497:CDS 25.0%
!!! TTGTTTTAGTGTTTTGGTTT+TGG - chr2.1:45373122-45373141 MS.gene98497:CDS 25.0%
!!! TTTCATTTTTGTTGGATTCA+GGG - chr2.1:45374351-45374370 MS.gene98497:intron 25.0%
!!! TTTTCATTTTTGTTGGATTC+AGG - chr2.1:45374350-45374369 MS.gene98497:intron 25.0%
!!! TTTTTCGTTTTAAATCTGTG+TGG - chr2.1:45374294-45374313 MS.gene98497:intron 25.0%
AAACACGCATAATAAGGTAA+CGG + chr2.1:45374332-45374351 None:intergenic 30.0%
ATTAGAGGATGTTACCATAA+AGG - chr2.1:45374822-45374841 MS.gene98497:intron 30.0%
CGATCTTCAAATAATCTCTA+TGG - chr2.1:45375119-45375138 MS.gene98497:CDS 30.0%
CTAATTGGCATTGTAGATTT+CGG - chr2.1:45374921-45374940 MS.gene98497:CDS 30.0%
CTTTCCACAAAACAATCAAA+AGG + chr2.1:45372675-45372694 None:intergenic 30.0%
GAATCACTGAATTTAATAGC+AGG + chr2.1:45373580-45373599 None:intergenic 30.0%
GCAGAAAATTAAAACAGTCA+AGG + chr2.1:45374269-45374288 None:intergenic 30.0%
GTTAACAAAGGTTACCTTTA+TGG + chr2.1:45374839-45374858 None:intergenic 30.0%
TATACATACAAGAATGTCTC+CGG - chr2.1:45374424-45374443 MS.gene98497:intron 30.0%
TATGTCGCTAAAATACCATA+TGG + chr2.1:45373905-45373924 None:intergenic 30.0%
TCTCAAATTATTAGTGGTGT+CGG - chr2.1:45372964-45372983 MS.gene98497:intron 30.0%
TGATTCTTTGTTAAAGCAGT+TGG - chr2.1:45374897-45374916 MS.gene98497:intron 30.0%
TGCATCATAAAGGTTAACAA+AGG + chr2.1:45374851-45374870 None:intergenic 30.0%
TGTTAACCTTTATGATGCAT+CGG - chr2.1:45374852-45374871 MS.gene98497:intron 30.0%
TTGACATGTAAAAACGATCT+AGG + chr2.1:45374215-45374234 None:intergenic 30.0%
TTTGATTGTAGGTTAGAGAT+TGG - chr2.1:45373989-45374008 MS.gene98497:intron 30.0%
! AAATGAGAGCTTTATGATCA+CGG - chr2.1:45373665-45373684 MS.gene98497:intron 30.0%
! ATAGAAGAAGTACACAAATG+GGG - chr2.1:45372461-45372480 MS.gene98497:CDS 30.0%
! ATCATAAAGCTCTCATTTTC+AGG + chr2.1:45373663-45373682 None:intergenic 30.0%
! CGTTTTTACATGTCAAGAAT+CGG - chr2.1:45374219-45374238 MS.gene98497:intron 30.0%
! GATAGAAGAAGTACACAAAT+GGG - chr2.1:45372460-45372479 MS.gene98497:CDS 30.0%
! GGTTTTTGTGATAAATCACA+AGG + chr2.1:45372635-45372654 None:intergenic 30.0%
! TACTTCTTCTATCAAGCTTT+TGG + chr2.1:45372453-45372472 None:intergenic 30.0%
! TGATAGAAGAAGTACACAAA+TGG - chr2.1:45372459-45372478 MS.gene98497:CDS 30.0%
! TGTGAGTTTAAGATACATGA+TGG - chr2.1:45372502-45372521 MS.gene98497:CDS 30.0%
! TTTATGTTTTATGCTAGGAG+TGG - chr2.1:45374590-45374609 MS.gene98497:intron 30.0%
!! ATTGTTGTGTCTCACTTTTA+TGG + chr2.1:45374100-45374119 None:intergenic 30.0%
!! CAATTTTTCGGAACAAAAAC+CGG + chr2.1:45373551-45373570 None:intergenic 30.0%
!! CATGTTTTTGATCTCAGAAA+AGG + chr2.1:45374043-45374062 None:intergenic 30.0%
!! TGCGTGTTTTTCATTTTTGT+TGG - chr2.1:45374343-45374362 MS.gene98497:intron 30.0%
!!! ATATGGTATTTTAGCGACAT+AGG - chr2.1:45373904-45373923 MS.gene98497:intron 30.0%
!!! GGAGGACTATTATTTTTGAT+TGG + chr2.1:45373530-45373549 None:intergenic 30.0%
AAAACTGTGTATGATGCTCT+TGG - chr2.1:45373856-45373875 MS.gene98497:intron 35.0%
AAAAGTGAGACACAACAATG+TGG - chr2.1:45374101-45374120 MS.gene98497:intron 35.0%
AAAGAACCGATGCATCATAA+AGG + chr2.1:45374861-45374880 None:intergenic 35.0%
AACCAAGCCAATTGCAAATA+TGG + chr2.1:45373295-45373314 None:intergenic 35.0%
AACCATATTTGCAATTGGCT+TGG - chr2.1:45373290-45373309 MS.gene98497:intron 35.0%
ACTATTATTCTTATGGGAGG+TGG + chr2.1:45374793-45374812 None:intergenic 35.0%
ACTCACGGAAAAGTAAAATC+AGG + chr2.1:45374539-45374558 None:intergenic 35.0%
AGCTCTTCTAGCAATTCTAA+TGG + chr2.1:45372594-45372613 None:intergenic 35.0%
CAATATCGAGAATCATGATG+TGG + chr2.1:45373722-45373741 None:intergenic 35.0%
CAATCTATGAAGCACAGATA+CGG + chr2.1:45373013-45373032 None:intergenic 35.0%
CAGAAAAGGATCTAATATCG+CGG + chr2.1:45374029-45374048 None:intergenic 35.0%
CATCATGATTCTCGATATTG+TGG - chr2.1:45373722-45373741 MS.gene98497:intron 35.0%
CTATTAGTCGTCTATATGCT+CGG - chr2.1:45375085-45375104 MS.gene98497:CDS 35.0%
GACAGATACTGTAACTCATT+GGG - chr2.1:45373608-45373627 MS.gene98497:intron 35.0%
GCAACTATTATTCTTATGGG+AGG + chr2.1:45374796-45374815 None:intergenic 35.0%
GCATCTTATGGTATTTGAGT+TGG - chr2.1:45374714-45374733 MS.gene98497:intron 35.0%
GGAACTAACCTATAAGCATT+CGG + chr2.1:45374248-45374267 None:intergenic 35.0%
GTAATTATACGTGTCAGTGT+CGG + chr2.1:45372927-45372946 None:intergenic 35.0%
TAGTACTGCTAGAAATCCAT+TGG - chr2.1:45374999-45375018 MS.gene98497:CDS 35.0%
TATGATGTGCCTAATTTCAC+AGG - chr2.1:45373818-45373837 MS.gene98497:intron 35.0%
TCAGCAGTTGAAAAAAGATG+TGG - chr2.1:45374146-45374165 MS.gene98497:intron 35.0%
TCTATATGCTCTCGTCAATA+TGG - chr2.1:45374482-45374501 MS.gene98497:intron 35.0%
TGACAGATACTGTAACTCAT+TGG - chr2.1:45373607-45373626 MS.gene98497:intron 35.0%
TGGAAAATCACAGTCAAATG+CGG - chr2.1:45373742-45373761 MS.gene98497:intron 35.0%
TGTATATAACCTACGACATG+AGG + chr2.1:45374410-45374429 None:intergenic 35.0%
TTATTGCAAGCTATGAAGCA+CGG - chr2.1:45372855-45372874 MS.gene98497:CDS 35.0%
TTCTGCACAGTTTCTTCATA+AGG - chr2.1:45372562-45372581 MS.gene98497:CDS 35.0%
! GTTAAAGCAGTTGGTCTAAT+TGG - chr2.1:45374906-45374925 MS.gene98497:intron 35.0%
!! AATAGTTGCTGATGGATTAG+AGG - chr2.1:45374807-45374826 MS.gene98497:intron 35.0%
!! AGGTTTTAACATGTGCCATA+TGG - chr2.1:45373887-45373906 MS.gene98497:intron 35.0%
!! GCTTTTGGAGAATGTTTCAA+TGG + chr2.1:45372438-45372457 None:intergenic 35.0%
!! GTACCCTTTTGATTGTTTTG+TGG - chr2.1:45372668-45372687 MS.gene98497:intron 35.0%
!! TCAAGTTTTGATGTTGGTGA+AGG + chr2.1:45373409-45373428 None:intergenic 35.0%
!! TTTTGATTGGTTGGTTGTTC+CGG + chr2.1:45373517-45373536 None:intergenic 35.0%
!!! ACAAAAACCTGCTGTTTTGA+AGG - chr2.1:45372646-45372665 MS.gene98497:intron 35.0%
AATGTGACAATGGCTGGATA+TGG - chr2.1:45375051-45375070 MS.gene98497:CDS 40.0%
ACAATGGCTGGATATGGATA+TGG - chr2.1:45375057-45375076 MS.gene98497:CDS 40.0%
AGCAGTCATGGTAATAGTTG+CGG - chr2.1:45373696-45373715 MS.gene98497:intron 40.0%
AGTTGGCGATAATGTGACAA+TGG - chr2.1:45375041-45375060 MS.gene98497:CDS 40.0%
ATATAACCTACGACATGAGG+AGG + chr2.1:45374407-45374426 None:intergenic 40.0%
ATCGGAATCCGAATGCTTAT+AGG - chr2.1:45374237-45374256 MS.gene98497:intron 40.0%
ATTATCGCCAACTCCAAGAT+CGG + chr2.1:45375034-45375053 None:intergenic 40.0%
CAACAATGTGGTACCTACAA+TGG - chr2.1:45374113-45374132 MS.gene98497:intron 40.0%
CGAGCATATAGACGACTAAT+AGG + chr2.1:45375087-45375106 None:intergenic 40.0%
CTGAAATGTGCTCGTGATTT+AGG + chr2.1:45373776-45373795 None:intergenic 40.0%
GAAGAGCTGTTGAACTTGAA+AGG - chr2.1:45372606-45372625 MS.gene98497:CDS 40.0%
GCATTGTAGATTTCGGATGA+GGG - chr2.1:45374928-45374947 MS.gene98497:CDS 40.0%
GTAGGTTAGAGATTGGTACT+TGG - chr2.1:45373996-45374015 MS.gene98497:intron 40.0%
TGTGTATGATGCTCTTGGAT+TGG - chr2.1:45373861-45373880 MS.gene98497:intron 40.0%
TTTCAACTGCTGAACACCTA+AGG + chr2.1:45374139-45374158 None:intergenic 40.0%
! ACGGCTTTATATAGCAGTCA+TGG - chr2.1:45373684-45373703 MS.gene98497:intron 40.0%
! CGTCTATATGCTCGGTATTT+TGG - chr2.1:45375093-45375112 MS.gene98497:CDS 40.0%
! TGGGGTTGTTTCAAACAAAC+TGG - chr2.1:45372479-45372498 MS.gene98497:CDS 40.0%
! TTTTAGCGACATAGGCAGAA+TGG - chr2.1:45373912-45373931 MS.gene98497:intron 40.0%
!! CTATATGCTCGGTATTTTGG+TGG - chr2.1:45375096-45375115 MS.gene98497:CDS 40.0%
!! TTTTTCGGAACAAAAACCGG+AGG + chr2.1:45373548-45373567 None:intergenic 40.0%
ACATACAAGAATGTCTCCGG+TGG - chr2.1:45374427-45374446 MS.gene98497:intron 45.0%
ACCATAAGATGCAAGTGAGC+TGG + chr2.1:45374706-45374725 None:intergenic 45.0%
ATCTTTCGCAGACCACTTCT+TGG + chr2.1:45374964-45374983 None:intergenic 45.0%
CGCCGTATATATGTACGTCA+GGG + chr2.1:45374514-45374533 None:intergenic 45.0%
GCCCCTGACGTACATATATA+CGG - chr2.1:45374509-45374528 MS.gene98497:intron 45.0%
GCCGTATATATGTACGTCAG+GGG + chr2.1:45374513-45374532 None:intergenic 45.0%
GGAACTCGTGATCTTAAAGC+AGG + chr2.1:45373642-45373661 None:intergenic 45.0%
GGCATTGTAGATTTCGGATG+AGG - chr2.1:45374927-45374946 MS.gene98497:CDS 45.0%
TATAGAGCGTGCATCGTCAA+CGG + chr2.1:45374468-45374487 None:intergenic 45.0%
TATGAAGCACGGACACTACT+CGG - chr2.1:45372866-45372885 MS.gene98497:intron 45.0%
TATGGGAGGTGGATCATTGT+CGG + chr2.1:45374782-45374801 None:intergenic 45.0%
TCCAGCTCACTTGCATCTTA+TGG - chr2.1:45374702-45374721 MS.gene98497:intron 45.0%
TCGCCGTATATATGTACGTC+AGG + chr2.1:45374515-45374534 None:intergenic 45.0%
TGAACACCTAAGGCCATTGT+AGG + chr2.1:45374129-45374148 None:intergenic 45.0%
TTGTAGATTTCGGATGAGGG+AGG - chr2.1:45374931-45374950 MS.gene98497:CDS 45.0%
!! AAGGGTACCTTCAAAACAGC+AGG + chr2.1:45372656-45372675 None:intergenic 45.0%
!!! TTTTAATATTAATAAAAAAG+TGG - chr2.1:45373175-45373194 MS.gene98497:CDS 5.0%
AATCCTCCTCCTCATGTCGT+AGG - chr2.1:45374398-45374417 MS.gene98497:intron 50.0%
ACGACATGAGGAGGAGGATT+TGG + chr2.1:45374398-45374417 None:intergenic 50.0%
AGATCGGCATGCTCATCCAA+TGG + chr2.1:45375018-45375037 None:intergenic 50.0%
AGGCCTACGCCTGTGAAATT+AGG + chr2.1:45373830-45373849 None:intergenic 50.0%
GGAGGTGGAATACCAAGAAG+TGG - chr2.1:45374949-45374968 MS.gene98497:CDS 50.0%
GGCGATAATGTGACAATGGC+TGG - chr2.1:45375045-45375064 MS.gene98497:CDS 50.0%
GTGCCTAATTTCACAGGCGT+AGG - chr2.1:45373824-45373843 MS.gene98497:intron 50.0%
GTGGTACCTACAATGGCCTT+AGG - chr2.1:45374120-45374139 MS.gene98497:intron 50.0%
TAACCTACGACATGAGGAGG+AGG + chr2.1:45374404-45374423 None:intergenic 50.0%
TACAAGAATGTCTCCGGTGG+AGG - chr2.1:45374430-45374449 MS.gene98497:intron 50.0%
TAGATTTCGGATGAGGGAGG+TGG - chr2.1:45374934-45374953 MS.gene98497:CDS 50.0%
TTGGATGAGCATGCCGATCT+TGG - chr2.1:45375018-45375037 MS.gene98497:CDS 50.0%
!! TGATGCTCTTGGATTGGCGT+AGG - chr2.1:45373867-45373886 MS.gene98497:intron 50.0%
ATACGACACGTGTCCGACAC+TGG + chr2.1:45372904-45372923 None:intergenic 55.0%
GAGCATGCCGATCTTGGAGT+TGG - chr2.1:45375024-45375043 MS.gene98497:CDS 55.0%
GATTAGGCGTGTCCCAGTGT+CGG - chr2.1:45372888-45372907 MS.gene98497:intron 55.0%
GCACGGACACTACTCGGATT+AGG - chr2.1:45372872-45372891 MS.gene98497:intron 55.0%
GCATTCCTTGCTACCTCCAC+CGG + chr2.1:45374446-45374465 None:intergenic 55.0%
TACGACACGTGTCCGACACT+GGG + chr2.1:45372903-45372922 None:intergenic 55.0%
TGTCTCCGGTGGAGGTAGCA+AGG - chr2.1:45374438-45374457 MS.gene98497:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 45372419 45375158 45372419 ID=MS.gene98497
chr2.1 mRNA 45372419 45375158 45372419 ID=MS.gene98497.t1;Parent=MS.gene98497
chr2.1 exon 45374910 45375158 45374910 ID=MS.gene98497.t1.exon1;Parent=MS.gene98497.t1
chr2.1 CDS 45374910 45375158 45374910 ID=cds.MS.gene98497.t1;Parent=MS.gene98497.t1
chr2.1 exon 45373319 45373577 45373319 ID=MS.gene98497.t1.exon2;Parent=MS.gene98497.t1
chr2.1 CDS 45373319 45373577 45373319 ID=cds.MS.gene98497.t1;Parent=MS.gene98497.t1
chr2.1 exon 45373025 45373205 45373025 ID=MS.gene98497.t1.exon3;Parent=MS.gene98497.t1
chr2.1 CDS 45373025 45373205 45373025 ID=cds.MS.gene98497.t1;Parent=MS.gene98497.t1
chr2.1 exon 45372734 45372881 45372734 ID=MS.gene98497.t1.exon4;Parent=MS.gene98497.t1
chr2.1 CDS 45372734 45372881 45372734 ID=cds.MS.gene98497.t1;Parent=MS.gene98497.t1
chr2.1 exon 45372419 45372640 45372419 ID=MS.gene98497.t1.exon5;Parent=MS.gene98497.t1
chr2.1 CDS 45372419 45372640 45372419 ID=cds.MS.gene98497.t1;Parent=MS.gene98497.t1
Gene Sequence

>MS.gene98497

ATGGCTGCAAAGAAAGCCATTGAAACATTCTCCAAAAGCTTGATAGAAGAAGTACACAAATGGGGTTGTTTCAAACAAACTGGTGTGAGTTTAAGATACATGATGGATTTTGGTTCTAAACCAACTCCAAAGAATTTGTTAATTTCTGCACAGTTTCTTCATAAGGAACTTGCCATTAGAATTGCTAGAAGAGCTGTTGAACTTGAAAGGCTTCCTTGTGATTTATCACAAAAACCTGCTGTTTTGAAGGTACCCTTTTGATTGTTTTGTGGAAAGAAATAATGGGTTGTTGTTAATTTTCTATTTGTGTTGATTTTTATATTTAGTGTAATTATGATTCTTTGATCTTATCTGTTTATGTTGAAATGAGTTTTGGATGTTTCTTGCAAGTTTTAATTATGTGTAGTTTTGTTTTGTTAATTAGTGTTTTTGAGGTTTATTGCAAGCTATGAAGCACGGACACTACTCGGATTAGGCGTGTCCCAGTGTCGGACACGTGTCGTATCCGACACTGACACGTATAATTACGCTGAATTATGTGATTTTCTCAAATTATTAGTGGTGTCGGCGTGTTAGTGTCAGTGTTTGTGTCCGTATCTGTGCTTCATAGATTGCAAGTTTCAATTATTTGTAGTGTTACTTTGTTAATTTTAGTTTTTTTATGTTGCTTGCAAGTTTGAGTTATTTGTAATGTTATTTTTGTTTGTTTTAGTGTTTTGGTTTTGGACGTATCTTGCAATCATTAAATTGATTGAATTTTAATATTAATAAAAAAGTGGTTTTGGGGATTAGCATTAAGAATATATAATGTAGATTATTGCTTTAGGTTTCTAGTTTATTAATATTTGTGGATAATGAACATGTCATGTTAAACCATATTTGCAATTGGCTTGGTTTATAAGCATGTGAACATGTTCTGTTGTGTTTCAATGTGTACAATGTTTATTCTTTTAGAATTGTTTAATTGAACAATTTTTTAAACAGAAACCTTCACCAACATCAAAACTTGAATGTTAACAATGCTAGAATGCATTGCAATTTTTAATTCGAAGAATCAAACTTAATAACGTGTTCTTAGAGTTGAAACTATATTATCCGGAACAACCAACCAATCAAAAATAATAGTCCTCCGGTTTTTGTTCCGAAAAATTGAAATTTCCTGCTATTAAATTCAGTGATTCATTATGGTGACAGATACTGTAACTCATTGGGACTGAGTTCCTGCTTTAAGATCACGAGTTCCTGAAAATGAGAGCTTTATGATCACGGCTTTATATAGCAGTCATGGTAATAGTTGCGGCCACATCATGATTCTCGATATTGTGGAAAATCACAGTCAAATGCGGCATTGTCACCTAAATCACGAGCACATTTCAGTTTTGTCAACATAAAAAACTGTTATGATGTGCCTAATTTCACAGGCGTAGGCCTTTATTTAAAACTGTGTATGATGCTCTTGGATTGGCGTAGGTTTTAACATGTGCCATATGGTATTTTAGCGACATAGGCAGAATGGCTCTTTGTAAAATTGATTTTTTGAAATGTCTATTGAATGTTTGTGCTACATTTTTTTGATTGTAGGTTAGAGATTGGTACTTGGATTCGTTCCGCGATATTAGATCCTTTTCTGAGATCAAAAACATGAATGATGAAAAGGAGTTCACTGAAGTGATCAAAGCCATAAAAGTGAGACACAACAATGTGGTACCTACAATGGCCTTAGGTGTTCAGCAGTTGAAAAAAGATGTGGACCCAAAGATTATTAATCAAGATTTTGTTGAGATTCATCAGTTCCTAGATCGTTTTTACATGTCAAGAATCGGAATCCGAATGCTTATAGGTTAGTTCCTTGACTGTTTTAATTTTCTGCAACATTTTTTCGTTTTAAATCTGTGTGGTCGCACTATACACCGTTACCTTATTATGCGTGTTTTTCATTTTTGTTGGATTCAGGGCAGCATGTTGAGTTGCACAGTCCAAATCCTCCTCCTCATGTCGTAGGTTATATACATACAAGAATGTCTCCGGTGGAGGTAGCAAGGAATGCCGTTGACGATGCACGCTCTATATGCTCTCGTCAATATGGAAGTGCCCCTGACGTACATATATACGGCGATCCTGATTTTACTTTTCCGTGAGTTACATACTTTTTACTTCCATGAATTCATTTGTTTATGTTTTATGCTAGGAGTGGTTATTATCTCATAACAATTTTAAACTGTACTCATGAAGTTATTTTCTGTTCTGTTATTTAAAATAGATATGTTTTTACAATAGGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCTTTGCGTGCTGTCGAAGAGCGTTACATGAATTCCGACAATGATCCACCTCCCATAAGAATAATAGTTGCTGATGGATTAGAGGATGTTACCATAAAGGTAACCTTTGTTAACCTTTATGATGCATCGGTTCTTTTCACTTGCTGTTATCATGATTCTTTGTTAAAGCAGTTGGTCTAATTGGCATTGTAGATTTCGGATGAGGGAGGTGGAATACCAAGAAGTGGTCTGCGAAAGATTTTTACATATCTGTATAGTACTGCTAGAAATCCATTGGATGAGCATGCCGATCTTGGAGTTGGCGATAATGTGACAATGGCTGGATATGGATATGGTCTTCCTATTAGTCGTCTATATGCTCGGTATTTTGGTGGCGATCTTCAAATAATCTCTATGGAAAATTATGGTGAGTAG
Protein sequence

>MS.gene98497.t1

MAAKKAIETFSKSLIEEVHKWGCFKQTGVSLRYMMDFGSKPTPKNLLISAQFLHKELAIRIARRAVELERLPCDLSQKPAVLKVRDWYLDSFRDIRSFSEIKNMNDEKEFTEVIKAIKVRHNNVVPTMALGVQQLKKDVDPKIINQDFVEIHQFLDRFYMSRIGIRMLIGQHVELHSPNPPPHVVGYIHTRMSPVEVARNAVDDARSICSRQYGSAPDVHIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVEERYMNSDNDPPPIRIIVADGLEDVTIKISDEGGGIPRSGLRKIFTYLYSTARNPLDEHADLGVGDNVTMAGYGYGLPISRLYARYFGGDLQIISMENYGE