Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98747.t1 | XP_003604651.1 | 76.5 | 425 | 33 | 4 | 1 | 359 | 72 | 495 | 9.90E-164 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98747.t1 | G7JN22 | 76.5 | 425 | 33 | 4 | 1 | 359 | 72 | 495 | 7.1e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene98747 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene98747 | 0.808479 | 3.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98747.t1 | MTR_4g015550 | 77.882 | 425 | 27 | 4 | 1 | 359 | 72 | 495 | 0.0 | 619 |
| MS.gene98747.t1 | MTR_4g015550 | 75.385 | 65 | 14 | 1 | 252 | 314 | 448 | 512 | 1.70e-21 | 95.9 |
| MS.gene98747.t1 | MTR_4g015550 | 76.221 | 307 | 18 | 3 | 1 | 253 | 72 | 377 | 2.70e-154 | 439 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98747.t1 | AT5G01260 | 34.277 | 318 | 163 | 8 | 19 | 314 | 84 | 377 | 4.66e-48 | 167 |
| MS.gene98747.t1 | AT5G01260 | 38.525 | 244 | 122 | 4 | 10 | 239 | 75 | 304 | 3.39e-46 | 160 |
| MS.gene98747.t1 | AT5G01260 | 38.397 | 237 | 118 | 4 | 10 | 232 | 75 | 297 | 1.46e-45 | 158 |
Find 74 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCCTAAACTTGGTTTA+TGG | 0.208760 | 4.3:+82947118 | MS.gene98747:CDS |
| GAAAAGAAGGTGATATTATT+TGG | 0.215755 | 4.3:+82947648 | MS.gene98747:CDS |
| TGTTCATAGTTTCCCATGTT+TGG | 0.263305 | 4.3:-82947694 | None:intergenic |
| TTAGATTCTTCTTCCATTGT+TGG | 0.308755 | 4.3:-82949979 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4.3:-82949335 | None:intergenic |
| CGCAAGGCATTACCATGAAT+TGG | 0.309591 | 4.3:-82950009 | None:intergenic |
| CTATACAAGTTGATACTAAA+AGG | 0.314326 | 4.3:+82947626 | MS.gene98747:CDS |
| CTACTAAAAGATTGCGACTT+TGG | 0.316881 | 4.3:+82947072 | MS.gene98747:CDS |
| GGAGAACAGTTTCTAATAGT+TGG | 0.352666 | 4.3:+82947093 | MS.gene98747:CDS |
| AATAATTGTTCTTGAGGATT+GGG | 0.356549 | 4.3:+82947718 | MS.gene98747:CDS |
| GGGTTCCATAAACCAAGTTT+AGG | 0.360824 | 4.3:-82947123 | None:intergenic |
| GCTATGTTTGCCGAAAATAT+AGG | 0.378453 | 4.3:+82947827 | MS.gene98747:CDS |
| AGAACCGGAGGTTCTTCATT+TGG | 0.386077 | 4.3:-82947788 | None:intergenic |
| AACATAGCCATTGGCTTCTC+TGG | 0.387237 | 4.3:-82947812 | None:intergenic |
| GCATGAAGAACAGTTTCATT+TGG | 0.387821 | 4.3:+82949280 | MS.gene98747:CDS |
| CATGGTCTGATGGTCATATA+TGG | 0.388044 | 4.3:+82947166 | MS.gene98747:CDS |
| AGGTGATATTATTTGGCAAC+CGG | 0.392152 | 4.3:+82947655 | MS.gene98747:CDS |
| ACATGAAGAGCAGTTTCATT+TGG | 0.393105 | 4.3:+82949954 | MS.gene98747:CDS |
| GAATAATTGTTCTTGAGGAT+TGG | 0.398780 | 4.3:+82947717 | MS.gene98747:CDS |
| GTCAATGGTAATGCATCTAA+AGG | 0.413839 | 4.3:-82947144 | None:intergenic |
| TCTAACTCAGAGCCAATTCA+TGG | 0.434464 | 4.3:+82949997 | MS.gene98747:CDS |
| GGAGGTCCTGTTCTTGTACC+TGG | 0.437575 | 4.3:+82948007 | MS.gene98747:CDS |
| GTTGGAGATGATCCTAAACT+TGG | 0.469158 | 4.3:+82947111 | MS.gene98747:CDS |
| TTCTGATCCTGAGTTTCAAA+AGG | 0.469360 | 4.3:-82948112 | None:intergenic |
| ATTAAGCCAGGTACAAGAAC+AGG | 0.470486 | 4.3:-82948013 | None:intergenic |
| ATTGGCTTCTCTGGTAGAAC+CGG | 0.470881 | 4.3:-82947803 | None:intergenic |
| TCTTCTTCAACAACTTCACT+TGG | 0.473052 | 4.3:-82948061 | None:intergenic |
| GAACAGAATAATTGTTCTTG+AGG | 0.486338 | 4.3:+82947712 | MS.gene98747:CDS |
| TCAAACTCAGAGCCAATTCA+TGG | 0.486763 | 4.3:+82949323 | MS.gene98747:CDS |
| ATCATGTGTTCAGGATATGC+TGG | 0.508543 | 4.3:+82947589 | MS.gene98747:intron |
| GTACTTGTACTTATCTCTTG+TGG | 0.509169 | 4.3:-82949907 | None:intergenic |
| TCAATGGTAATGCATCTAAA+GGG | 0.510357 | 4.3:-82947143 | None:intergenic |
| TTACCGTTTCGAAGCCCCAC+TGG | 0.512596 | 4.3:-82949367 | None:intergenic |
| TGCCGAAAATATAGGTTCCT+CGG | 0.514374 | 4.3:+82947835 | MS.gene98747:CDS |
| TTGATACTAAAAGGAAAAGA+AGG | 0.516269 | 4.3:+82947635 | MS.gene98747:CDS |
| TTGGCATCAACAATGGAAGA+AGG | 0.534614 | 4.3:+82949299 | MS.gene98747:CDS |
| CATCCAGTGGGGCTTCGAAA+CGG | 0.535005 | 4.3:+82949364 | MS.gene98747:CDS |
| TCAACCAAATGAAGAACCTC+CGG | 0.536881 | 4.3:+82947784 | MS.gene98747:CDS |
| TATTATTTGGCAACCGGGGT+CGG | 0.540226 | 4.3:+82947661 | MS.gene98747:CDS |
| TCAGTCAACGGTATTAAGCC+AGG | 0.540479 | 4.3:-82948025 | None:intergenic |
| TGTTCGCTTTGTTGAACTTG+AGG | 0.544102 | 4.3:-82946920 | None:intergenic |
| CGGATCGAGTAATCCAAACA+TGG | 0.544820 | 4.3:+82947681 | MS.gene98747:CDS |
| AGAACTTCAGAAAATAATAG+AGG | 0.549395 | 4.3:+82947748 | MS.gene98747:CDS |
| GTTTCAAAAGGTTCAACTGA+TGG | 0.554167 | 4.3:-82948100 | None:intergenic |
| AAGAGTGAAGAATCTGAAGA+TGG | 0.555921 | 4.3:+82947911 | MS.gene98747:CDS |
| TGGATTACTCGATCCGACCC+CGG | 0.556713 | 4.3:-82947674 | None:intergenic |
| TGACCATCAGACCATGTCAA+TGG | 0.564403 | 4.3:-82947159 | None:intergenic |
| GTTTCATTTGGCATCAACAA+TGG | 0.568666 | 4.3:+82949292 | MS.gene98747:CDS |
| GGCTTCTCTGGTAGAACCGG+AGG | 0.575456 | 4.3:-82947800 | None:intergenic |
| TCATATATGGACTGTTGAGC+TGG | 0.575955 | 4.3:+82947179 | MS.gene98747:CDS |
| GTTTCATTTGGCACCAACAA+TGG | 0.578517 | 4.3:+82949966 | MS.gene98747:CDS |
| CCAGCTTCTTCTTCAGTCAA+CGG | 0.590556 | 4.3:-82948037 | None:intergenic |
| TGTGTTCAGGATATGCTGGC+TGG | 0.594337 | 4.3:+82947593 | MS.gene98747:intron |
| CCACTGGATGTCATTTCGCA+AGG | 0.596297 | 4.3:-82949351 | None:intergenic |
| TGGCATCAACAATGGAAGAA+GGG | 0.602203 | 4.3:+82949300 | MS.gene98747:CDS |
| TGAAAATGTTCAGTTGAGCA+AGG | 0.604858 | 4.3:+82949861 | MS.gene98747:intron |
| TAGATGCATTACCATTGACA+TGG | 0.613812 | 4.3:+82947148 | MS.gene98747:CDS |
| CCTTGCGAAATGACATCCAG+TGG | 0.615325 | 4.3:+82949351 | MS.gene98747:CDS |
| GGTGATATTATTTGGCAACC+GGG | 0.626598 | 4.3:+82947656 | MS.gene98747:CDS |
| TGAAAATGCTCAGTTAAGCA+AGG | 0.630052 | 4.3:+82949193 | MS.gene98747:intron |
| ACTTCAGAAAATAATAGAGG+AGG | 0.634094 | 4.3:+82947751 | MS.gene98747:CDS |
| TTACCATTGACATGGTCTGA+TGG | 0.637869 | 4.3:+82947156 | MS.gene98747:CDS |
| CTTGCGAAATGACATCCAGT+GGG | 0.638788 | 4.3:+82949352 | MS.gene98747:CDS |
| GGTTCTACCAGAGAAGCCAA+TGG | 0.652910 | 4.3:+82947805 | MS.gene98747:CDS |
| CCGTTGACTGAAGAAGAAGC+TGG | 0.654789 | 4.3:+82948037 | MS.gene98747:CDS |
| GTGATATTATTTGGCAACCG+GGG | 0.662994 | 4.3:+82947657 | MS.gene98747:CDS |
| TTCAACTGATGGCTCTACCA+CGG | 0.664103 | 4.3:-82948089 | None:intergenic |
| GGATCGAGTAATCCAAACAT+GGG | 0.665164 | 4.3:+82947682 | MS.gene98747:CDS |
| ACTTTCTGTGAGATCCTCCG+AGG | 0.674643 | 4.3:-82947852 | None:intergenic |
| CGAAAATATAGGTTCCTCGG+AGG | 0.707768 | 4.3:+82947838 | MS.gene98747:CDS |
| TCAGGATCAGAATATACCAG+AGG | 0.719056 | 4.3:+82948123 | MS.gene98747:CDS |
| TGTTGAAGAAGAAAAGACCG+TGG | 0.738151 | 4.3:+82948072 | MS.gene98747:CDS |
| TTGCGAAATGACATCCAGTG+GGG | 0.750769 | 4.3:+82949353 | MS.gene98747:CDS |
| TTAGTAGCTGAAACTCAACA+CGG | 0.751100 | 4.3:-82947056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAGAAAATTTGTA+TGG | - | chr4.3:82948937-82948956 | None:intergenic | 15.0% |
| !! | ATTAATGATAACAATCAATT+TGG | - | chr4.3:82948403-82948422 | None:intergenic | 15.0% |
| !! | TCTTAATTTCAAAGATTTAA+CGG | - | chr4.3:82947452-82947471 | None:intergenic | 15.0% |
| !! | TTGGAAACAAAATAAAAAAA+AGG | - | chr4.3:82947306-82947325 | None:intergenic | 15.0% |
| !!! | AACACACAAATTAAAATTTT+AGG | - | chr4.3:82947014-82947033 | None:intergenic | 15.0% |
| !!! | ACACACAAATTAAAATTTTA+GGG | - | chr4.3:82947013-82947032 | None:intergenic | 15.0% |
| !!! | TCATTGCTTTAAATAATTAA+TGG | - | chr4.3:82949752-82949771 | None:intergenic | 15.0% |
| !!! | TTGCACATTTTTTTAATATA+TGG | + | chr4.3:82949104-82949123 | MS.gene98747:intron | 15.0% |
| !! | AAGAGTTCTTGTAAATAAAA+CGG | - | chr4.3:82949621-82949640 | None:intergenic | 20.0% |
| !! | CAAATCATTAAGATATTGTT+TGG | + | chr4.3:82947217-82947236 | MS.gene98747:intron | 20.0% |
| !! | CAGCGTTAAAAAATAAAAAA+GGG | + | chr4.3:82947951-82947970 | MS.gene98747:CDS | 20.0% |
| !!! | AAATAAATTGTGTGTTGTTA+TGG | - | chr4.3:82948539-82948558 | None:intergenic | 20.0% |
| !!! | ATATAATTTTAGTGCTTGTT+TGG | - | chr4.3:82948899-82948918 | None:intergenic | 20.0% |
| ! | AAAAAAAGATGTCCAAAATC+TGG | - | chr4.3:82949507-82949526 | None:intergenic | 25.0% |
| ! | AAAAAAGATGTCCAAAATCT+GGG | - | chr4.3:82949506-82949525 | None:intergenic | 25.0% |
| ! | AACAAACAAGTATGTTCTAA+TGG | + | chr4.3:82946939-82946958 | MS.gene98747:intron | 25.0% |
| ! | AATAATTGTTCTTGAGGATT+GGG | + | chr4.3:82947718-82947737 | MS.gene98747:CDS | 25.0% |
| ! | AGAACTTCAGAAAATAATAG+AGG | + | chr4.3:82947748-82947767 | MS.gene98747:CDS | 25.0% |
| ! | AGAGTTCTTGTAAATAAAAC+GGG | - | chr4.3:82949620-82949639 | None:intergenic | 25.0% |
| ! | ATCAGATATATTCTAGTCAA+TGG | - | chr4.3:82949646-82949665 | None:intergenic | 25.0% |
| ! | ATGATGATACAAACAAAACA+AGG | - | chr4.3:82948265-82948284 | None:intergenic | 25.0% |
| ! | GAAAAGAAGGTGATATTATT+TGG | + | chr4.3:82947648-82947667 | MS.gene98747:CDS | 25.0% |
| ! | GATTATATATGTACGAAACA+AGG | - | chr4.3:82948341-82948360 | None:intergenic | 25.0% |
| ! | GCAGCGTTAAAAAATAAAAA+AGG | + | chr4.3:82947950-82947969 | MS.gene98747:CDS | 25.0% |
| ! | TATAAACAACCACTACATAA+CGG | - | chr4.3:82947563-82947582 | None:intergenic | 25.0% |
| ! | TATATAATCAATGCATCTTG+AGG | + | chr4.3:82948352-82948371 | MS.gene98747:intron | 25.0% |
| ! | TTGATACTAAAAGGAAAAGA+AGG | + | chr4.3:82947635-82947654 | MS.gene98747:CDS | 25.0% |
| !! | ATATTTTTCATCATGTGTTC+AGG | + | chr4.3:82947580-82947599 | MS.gene98747:intron | 25.0% |
| !! | CTTTTAGTATCAACTTGTAT+AGG | - | chr4.3:82947628-82947647 | None:intergenic | 25.0% |
| !! | TTTGGTCGAAAACATTTTTA+AGG | + | chr4.3:82947235-82947254 | MS.gene98747:intron | 25.0% |
| !!! | ACATTGGTTTAAATGATTAC+TGG | - | chr4.3:82949078-82949097 | None:intergenic | 25.0% |
| !!! | CTATACAAGTTGATACTAAA+AGG | + | chr4.3:82947626-82947645 | MS.gene98747:CDS | 25.0% |
| !!! | GGTTTTAATAAAAAGGTTTG+CGG | - | chr4.3:82948714-82948733 | None:intergenic | 25.0% |
| !!! | GTTTGTTAAGTTTTTGTAAC+AGG | - | chr4.3:82948744-82948763 | None:intergenic | 25.0% |
| !!! | TATTTTAATCTGAAACAAGC+TGG | + | chr4.3:82948554-82948573 | MS.gene98747:intron | 25.0% |
| !!! | TTTTTATTTTTTAACGCTGC+AGG | - | chr4.3:82947950-82947969 | None:intergenic | 25.0% |
| AAATAAAAAAGGGACGATTG+TGG | + | chr4.3:82947961-82947980 | MS.gene98747:CDS | 30.0% | |
| AAATGTGCAAGTTTACACAT+TGG | - | chr4.3:82949094-82949113 | None:intergenic | 30.0% | |
| ACTTCAGAAAATAATAGAGG+AGG | + | chr4.3:82947751-82947770 | MS.gene98747:CDS | 30.0% | |
| ATGATCCTAAACTTGGTTTA+TGG | + | chr4.3:82947118-82947137 | MS.gene98747:CDS | 30.0% | |
| CACTTAGAGAAGAACTAATT+AGG | + | chr4.3:82948224-82948243 | MS.gene98747:intron | 30.0% | |
| CGGAATCAAACAATTTGAAA+AGG | - | chr4.3:82948173-82948192 | None:intergenic | 30.0% | |
| CTTCTGATGAAAAAACAACA+GGG | + | chr4.3:82949014-82949033 | MS.gene98747:intron | 30.0% | |
| GAACAGAATAATTGTTCTTG+AGG | + | chr4.3:82947712-82947731 | MS.gene98747:CDS | 30.0% | |
| GAATAATTGTTCTTGAGGAT+TGG | + | chr4.3:82947717-82947736 | MS.gene98747:CDS | 30.0% | |
| GAGTTCTTGTAAATAAAACG+GGG | - | chr4.3:82949619-82949638 | None:intergenic | 30.0% | |
| TCAAACAATTTGAAAAGGAG+CGG | - | chr4.3:82948168-82948187 | None:intergenic | 30.0% | |
| TTAGATTCTTCTTCCATTGT+TGG | - | chr4.3:82949982-82950001 | None:intergenic | 30.0% | |
| ! | CGTTTCTTTAAAAGCTCATT+CGG | + | chr4.3:82948191-82948210 | MS.gene98747:intron | 30.0% |
| ! | CTAATTAGTTCTTCTCTAAG+TGG | - | chr4.3:82948226-82948245 | None:intergenic | 30.0% |
| ! | GTTTCTTTAAAAGCTCATTC+GGG | + | chr4.3:82948192-82948211 | MS.gene98747:intron | 30.0% |
| ! | TCAATGGTAATGCATCTAAA+GGG | - | chr4.3:82947146-82947165 | None:intergenic | 30.0% |
| !! | ATTTTAGTGCTTGTTTGGAT+TGG | - | chr4.3:82948894-82948913 | None:intergenic | 30.0% |
| !! | CGAATGAGCTTTTAAAGAAA+CGG | - | chr4.3:82948193-82948212 | None:intergenic | 30.0% |
| !! | TCTGCAGGGTTTTAATAAAA+AGG | - | chr4.3:82948721-82948740 | None:intergenic | 30.0% |
| !!! | GATTGTTTTGATGTCAAATG+TGG | + | chr4.3:82949411-82949430 | MS.gene98747:intron | 30.0% |
| AAAGGTGAAAACAACGTAAC+TGG | - | chr4.3:82947288-82947307 | None:intergenic | 35.0% | |
| AAGAGTGAAGAATCTGAAGA+TGG | + | chr4.3:82947911-82947930 | MS.gene98747:CDS | 35.0% | |
| ACATGAAGAGCAGTTTCATT+TGG | + | chr4.3:82949954-82949973 | MS.gene98747:CDS | 35.0% | |
| AGACACTTAGTAATGCTAGA+TGG | - | chr4.3:82948770-82948789 | None:intergenic | 35.0% | |
| AGCATTACTAAGTGTCTGTT+TGG | + | chr4.3:82948773-82948792 | MS.gene98747:intron | 35.0% | |
| AGGTGATATTATTTGGCAAC+CGG | + | chr4.3:82947655-82947674 | MS.gene98747:CDS | 35.0% | |
| ATTCAACAGCCAAAAGTTCA+TGG | - | chr4.3:82948508-82948527 | None:intergenic | 35.0% | |
| CTACTAAAAGATTGCGACTT+TGG | + | chr4.3:82947072-82947091 | MS.gene98747:CDS | 35.0% | |
| GCATGAAGAACAGTTTCATT+TGG | + | chr4.3:82949280-82949299 | MS.gene98747:CDS | 35.0% | |
| GCTATGTTTGCCGAAAATAT+AGG | + | chr4.3:82947827-82947846 | MS.gene98747:CDS | 35.0% | |
| GCTTCTGATGAAAAAACAAC+AGG | + | chr4.3:82949013-82949032 | MS.gene98747:intron | 35.0% | |
| GGAGAACAGTTTCTAATAGT+TGG | + | chr4.3:82947093-82947112 | MS.gene98747:CDS | 35.0% | |
| GTACTTGTACTTATCTCTTG+TGG | - | chr4.3:82949910-82949929 | None:intergenic | 35.0% | |
| GTTTCAAAAGGTTCAACTGA+TGG | - | chr4.3:82948103-82948122 | None:intergenic | 35.0% | |
| GTTTCATTTGGCATCAACAA+TGG | + | chr4.3:82949292-82949311 | MS.gene98747:CDS | 35.0% | |
| TAGATGCATTACCATTGACA+TGG | + | chr4.3:82947148-82947167 | MS.gene98747:CDS | 35.0% | |
| TCTTCTTCAACAACTTCACT+TGG | - | chr4.3:82948064-82948083 | None:intergenic | 35.0% | |
| TGAAAATGCTCAGTTAAGCA+AGG | + | chr4.3:82949193-82949212 | MS.gene98747:intron | 35.0% | |
| TGAAAATGTTCAGTTGAGCA+AGG | + | chr4.3:82949861-82949880 | MS.gene98747:intron | 35.0% | |
| TGTTCATAGTTTCCCATGTT+TGG | - | chr4.3:82947697-82947716 | None:intergenic | 35.0% | |
| TTAGTAGCTGAAACTCAACA+CGG | - | chr4.3:82947059-82947078 | None:intergenic | 35.0% | |
| TTCTGATCCTGAGTTTCAAA+AGG | - | chr4.3:82948115-82948134 | None:intergenic | 35.0% | |
| TTTAGGGATTTGAGTCCTAA+AGG | - | chr4.3:82946997-82947016 | None:intergenic | 35.0% | |
| ! | CTTAAAACTCTGGTTTCCAT+CGG | - | chr4.3:82947408-82947427 | None:intergenic | 35.0% |
| ! | GAGATGTTACCATGAACTTT+TGG | + | chr4.3:82948496-82948515 | MS.gene98747:intron | 35.0% |
| ! | GTCAATGGTAATGCATCTAA+AGG | - | chr4.3:82947147-82947166 | None:intergenic | 35.0% |
| ! | TTCACTTGTAGGCTTTAGTT+AGG | + | chr4.3:82949038-82949057 | MS.gene98747:intron | 35.0% |
| !! | AAAGTCGATGCTAGTCTTAA+TGG | + | chr4.3:82949806-82949825 | MS.gene98747:intron | 35.0% |
| !! | AGCTTAATCGATTTTGAAGG+AGG | + | chr4.3:82947989-82948008 | MS.gene98747:CDS | 35.0% |
| !! | GGAAGCTTAATCGATTTTGA+AGG | + | chr4.3:82947986-82948005 | MS.gene98747:CDS | 35.0% |
| !!! | AGTTGAACCTTTTGAAACTC+AGG | + | chr4.3:82948105-82948124 | MS.gene98747:CDS | 35.0% |
| !!! | CTCTTTTGGTCTTAAAACTC+TGG | - | chr4.3:82947418-82947437 | None:intergenic | 35.0% |
| AAAAAAGGGACGATTGTGGA+GGG | + | chr4.3:82947965-82947984 | MS.gene98747:CDS | 40.0% | |
| ACTTCCTGTGATATACCGTT+AGG | + | chr4.3:82949682-82949701 | MS.gene98747:intron | 40.0% | |
| AGTCACGATCCTTGATATTG+CGG | + | chr4.3:82948599-82948618 | MS.gene98747:intron | 40.0% | |
| ATCATGTGTTCAGGATATGC+TGG | + | chr4.3:82947589-82947608 | MS.gene98747:intron | 40.0% | |
| ATCTTGAGGCCAAAAGAAAG+GGG | + | chr4.3:82948366-82948385 | MS.gene98747:intron | 40.0% | |
| ATTAAGCCAGGTACAAGAAC+AGG | - | chr4.3:82948016-82948035 | None:intergenic | 40.0% | |
| CATCTTGAGGCCAAAAGAAA+GGG | + | chr4.3:82948365-82948384 | MS.gene98747:intron | 40.0% | |
| CATGGTCTGATGGTCATATA+TGG | + | chr4.3:82947166-82947185 | MS.gene98747:CDS | 40.0% | |
| CGGTGAATTTGACACAATCA+TGG | - | chr4.3:82948871-82948890 | None:intergenic | 40.0% | |
| CTTCCTGTGATATACCGTTA+GGG | + | chr4.3:82949683-82949702 | MS.gene98747:intron | 40.0% | |
| GAGTCTTTGCAACAAGTCTA+GGG | - | chr4.3:82949534-82949553 | None:intergenic | 40.0% | |
| GATGTATGCAACCTCAATTG+TGG | + | chr4.3:82949436-82949455 | MS.gene98747:intron | 40.0% | |
| GGATCGAGTAATCCAAACAT+GGG | + | chr4.3:82947682-82947701 | MS.gene98747:CDS | 40.0% | |
| GGGTTCCATAAACCAAGTTT+AGG | - | chr4.3:82947126-82947145 | None:intergenic | 40.0% | |
| GGTGATATTATTTGGCAACC+GGG | + | chr4.3:82947656-82947675 | MS.gene98747:CDS | 40.0% | |
| GTGATATTATTTGGCAACCG+GGG | + | chr4.3:82947657-82947676 | MS.gene98747:CDS | 40.0% | |
| GTTGGAGATGATCCTAAACT+TGG | + | chr4.3:82947111-82947130 | MS.gene98747:CDS | 40.0% | |
| GTTTCATTTGGCACCAACAA+TGG | + | chr4.3:82949966-82949985 | MS.gene98747:CDS | 40.0% | |
| TAAAAAAGGGACGATTGTGG+AGG | + | chr4.3:82947964-82947983 | MS.gene98747:CDS | 40.0% | |
| TCAAACTCAGAGCCAATTCA+TGG | + | chr4.3:82949323-82949342 | MS.gene98747:CDS | 40.0% | |
| TCAACCAAATGAAGAACCTC+CGG | + | chr4.3:82947784-82947803 | MS.gene98747:CDS | 40.0% | |
| TCAGGATCAGAATATACCAG+AGG | + | chr4.3:82948123-82948142 | MS.gene98747:CDS | 40.0% | |
| TCCAAAATGTTCTCGAAACC+TGG | + | chr4.3:82947321-82947340 | MS.gene98747:intron | 40.0% | |
| TCTAACTCAGAGCCAATTCA+TGG | + | chr4.3:82949997-82950016 | MS.gene98747:CDS | 40.0% | |
| TCTTCTGCATGTCTTCCTTT+AGG | + | chr4.3:82946979-82946998 | MS.gene98747:intron | 40.0% | |
| TGAGTCTTTGCAACAAGTCT+AGG | - | chr4.3:82949535-82949554 | None:intergenic | 40.0% | |
| TGCCGAAAATATAGGTTCCT+CGG | + | chr4.3:82947835-82947854 | MS.gene98747:CDS | 40.0% | |
| TGGCATCAACAATGGAAGAA+GGG | + | chr4.3:82949300-82949319 | MS.gene98747:CDS | 40.0% | |
| TGTTGAAGAAGAAAAGACCG+TGG | + | chr4.3:82948072-82948091 | MS.gene98747:CDS | 40.0% | |
| TTACCATTGACATGGTCTGA+TGG | + | chr4.3:82947156-82947175 | MS.gene98747:CDS | 40.0% | |
| TTGGCATCAACAATGGAAGA+AGG | + | chr4.3:82949299-82949318 | MS.gene98747:CDS | 40.0% | |
| ! | AGTTTTTGTAACAGGTCTGC+AGG | - | chr4.3:82948736-82948755 | None:intergenic | 40.0% |
| ! | CGGTGAAAACAACACTCTTT+TGG | - | chr4.3:82947432-82947451 | None:intergenic | 40.0% |
| ! | CTCCGAGGAACCTATATTTT+CGG | - | chr4.3:82947840-82947859 | None:intergenic | 40.0% |
| ! | GCAATGTTTCCCCTTTCTTT+TGG | - | chr4.3:82948378-82948397 | None:intergenic | 40.0% |
| ! | GTTTTTGTAACAGGTCTGCA+GGG | - | chr4.3:82948735-82948754 | None:intergenic | 40.0% |
| ! | TCATATATGGACTGTTGAGC+TGG | + | chr4.3:82947179-82947198 | MS.gene98747:CDS | 40.0% |
| ! | TGCGATTTTCCGCAATATCA+AGG | - | chr4.3:82948611-82948630 | None:intergenic | 40.0% |
| ! | TGTTCGCTTTGTTGAACTTG+AGG | - | chr4.3:82946923-82946942 | None:intergenic | 40.0% |
| ! | TTAGTGCTTGTTTGGATTGG+CGG | - | chr4.3:82948891-82948910 | None:intergenic | 40.0% |
| ! | TTTTCGGCAAACATAGCCAT+TGG | - | chr4.3:82947824-82947843 | None:intergenic | 40.0% |
| AAATGTTCTCGAAACCTGGC+TGG | + | chr4.3:82947325-82947344 | MS.gene98747:intron | 45.0% | |
| AACAACAGGGCTTCACTTGT+AGG | + | chr4.3:82949027-82949046 | MS.gene98747:intron | 45.0% | |
| AAGCCCTAACGGTATATCAC+AGG | - | chr4.3:82949689-82949708 | None:intergenic | 45.0% | |
| AATCTGGGCAGCAACATCAA+TGG | - | chr4.3:82949491-82949510 | None:intergenic | 45.0% | |
| AGAACCGGAGGTTCTTCATT+TGG | - | chr4.3:82947791-82947810 | None:intergenic | 45.0% | |
| AGTCTTTGCAACCACAACTG+AGG | - | chr4.3:82948658-82948677 | None:intergenic | 45.0% | |
| CCAGCTTCTTCTTCAGTCAA+CGG | - | chr4.3:82948040-82948059 | None:intergenic | 45.0% | |
| CGAAAATATAGGTTCCTCGG+AGG | + | chr4.3:82947838-82947857 | MS.gene98747:CDS | 45.0% | |
| CGGATCGAGTAATCCAAACA+TGG | + | chr4.3:82947681-82947700 | MS.gene98747:CDS | 45.0% | |
| CTAACTCAACCCTACAAAGC+TGG | - | chr4.3:82949714-82949733 | None:intergenic | 45.0% | |
| CTTGCGAAATGACATCCAGT+GGG | + | chr4.3:82949352-82949371 | MS.gene98747:CDS | 45.0% | |
| GAAAGCAGACCGTTATGTAG+TGG | + | chr4.3:82947551-82947570 | MS.gene98747:intron | 45.0% | |
| GCATCTTGAGGCCAAAAGAA+AGG | + | chr4.3:82948364-82948383 | MS.gene98747:intron | 45.0% | |
| TATTATTTGGCAACCGGGGT+CGG | + | chr4.3:82947661-82947680 | MS.gene98747:CDS | 45.0% | |
| TCAGTCAACGGTATTAAGCC+AGG | - | chr4.3:82948028-82948047 | None:intergenic | 45.0% | |
| TGACCATCAGACCATGTCAA+TGG | - | chr4.3:82947162-82947181 | None:intergenic | 45.0% | |
| TGATGTTGCAACCCAGATCA+CGG | + | chr4.3:82948688-82948707 | MS.gene98747:intron | 45.0% | |
| TTGCGAAATGACATCCAGTG+GGG | + | chr4.3:82949353-82949372 | MS.gene98747:CDS | 45.0% | |
| ! | AACAAGGTGATGATGAGCGT+TGG | - | chr4.3:82948325-82948344 | None:intergenic | 45.0% |
| ! | AACTCTGGTTTCCATCGGAA+AGG | - | chr4.3:82947403-82947422 | None:intergenic | 45.0% |
| ! | ACTCTGGTTTCCATCGGAAA+GGG | - | chr4.3:82947402-82947421 | None:intergenic | 45.0% |
| ! | ATGGCGACTCATGGTGATTT+TGG | - | chr4.3:82948852-82948871 | None:intergenic | 45.0% |
| ! | ATTGGCTTCTCTGGTAGAAC+CGG | - | chr4.3:82947806-82947825 | None:intergenic | 45.0% |
| ! | CAGCTTTGTAGGGTTGAGTT+AGG | + | chr4.3:82949712-82949731 | MS.gene98747:intron | 45.0% |
| ! | CGCAAGGCATTACCATGAAT+TGG | - | chr4.3:82949338-82949357 | None:intergenic | 45.0% |
| ! | CTCAATTGTGGTTTGCGTTG+CGG | + | chr4.3:82949448-82949467 | MS.gene98747:intron | 45.0% |
| ! | GCCAGGTTTCGAGAACATTT+TGG | - | chr4.3:82947325-82947344 | None:intergenic | 45.0% |
| ! | GCTGGCAATGTTCTAAGTCA+TGG | + | chr4.3:82948572-82948591 | MS.gene98747:intron | 45.0% |
| ! | TGATGTTGCTGCCCAGATTT+TGG | + | chr4.3:82949492-82949511 | MS.gene98747:intron | 45.0% |
| ! | TGTCTGTTTGGAACCAATCG+CGG | + | chr4.3:82948785-82948804 | MS.gene98747:intron | 45.0% |
| ! | TTCAACTGATGGCTCTACCA+CGG | - | chr4.3:82948092-82948111 | None:intergenic | 45.0% |
| !! | AACATAGCCATTGGCTTCTC+TGG | - | chr4.3:82947815-82947834 | None:intergenic | 45.0% |
| ACTCATCAAGCGGTTACCTC+TGG | - | chr4.3:82948142-82948161 | None:intergenic | 50.0% | |
| ACTTTCTGTGAGATCCTCCG+AGG | - | chr4.3:82947855-82947874 | None:intergenic | 50.0% | |
| ATTACCAGAGCCCTTTCCGA+TGG | + | chr4.3:82947389-82947408 | MS.gene98747:intron | 50.0% | |
| CAAAGCTGGTGAAGCCCTAA+CGG | - | chr4.3:82949700-82949719 | None:intergenic | 50.0% | |
| CCTTGCGAAATGACATCCAG+TGG | + | chr4.3:82949351-82949370 | MS.gene98747:CDS | 50.0% | |
| CGCAACGCAAACCACAATTG+AGG | - | chr4.3:82949450-82949469 | None:intergenic | 50.0% | |
| CGGAAAATCGCAGTCAAGTG+TGG | + | chr4.3:82948619-82948638 | MS.gene98747:intron | 50.0% | |
| CTGGTAATCCAGAGTTCGGT+CGG | - | chr4.3:82947377-82947396 | None:intergenic | 50.0% | |
| GACACAATCATGGCGACTCA+TGG | - | chr4.3:82948861-82948880 | None:intergenic | 50.0% | |
| GATGCATGCAACCTCAGTTG+TGG | + | chr4.3:82948644-82948663 | MS.gene98747:intron | 50.0% | |
| GGTTCTACCAGAGAAGCCAA+TGG | + | chr4.3:82947805-82947824 | MS.gene98747:CDS | 50.0% | |
| TGGTAATCCAGAGTTCGGTC+GGG | - | chr4.3:82947376-82947395 | None:intergenic | 50.0% | |
| TGTGTTCAGGATATGCTGGC+TGG | + | chr4.3:82947593-82947612 | MS.gene98747:intron | 50.0% | |
| ! | AGGGCTTCACCAGCTTTGTA+GGG | + | chr4.3:82949702-82949721 | MS.gene98747:intron | 50.0% |
| ! | CCACTGGATGTCATTTCGCA+AGG | - | chr4.3:82949354-82949373 | None:intergenic | 50.0% |
| ! | CCGTTGACTGAAGAAGAAGC+TGG | + | chr4.3:82948037-82948056 | MS.gene98747:CDS | 50.0% |
| ! | GGCTCTGGTAATCCAGAGTT+CGG | - | chr4.3:82947381-82947400 | None:intergenic | 50.0% |
| ! | TAGGGCTTCACCAGCTTTGT+AGG | + | chr4.3:82949701-82949720 | MS.gene98747:intron | 50.0% |
| AAAGGTTTGCGGCCGTGATC+TGG | - | chr4.3:82948703-82948722 | None:intergenic | 55.0% | |
| AAGGTTTGCGGCCGTGATCT+GGG | - | chr4.3:82948702-82948721 | None:intergenic | 55.0% | |
| CATCCAGTGGGGCTTCGAAA+CGG | + | chr4.3:82949364-82949383 | MS.gene98747:CDS | 55.0% | |
| GGAGGTCCTGTTCTTGTACC+TGG | + | chr4.3:82948007-82948026 | MS.gene98747:CDS | 55.0% | |
| GTTTCCATCGGAAAGGGCTC+TGG | - | chr4.3:82947396-82947415 | None:intergenic | 55.0% | |
| TAATCCAGAGTTCGGTCGGG+AGG | - | chr4.3:82947373-82947392 | None:intergenic | 55.0% | |
| TGGATTACTCGATCCGACCC+CGG | - | chr4.3:82947677-82947696 | None:intergenic | 55.0% | |
| TTACCGTTTCGAAGCCCCAC+TGG | - | chr4.3:82949370-82949389 | None:intergenic | 55.0% | |
| ! | CTGTTTGGAACCAATCGCGG+TGG | + | chr4.3:82948788-82948807 | MS.gene98747:intron | 55.0% |
| AACCTGGCTGGAGCAGTCCT+TGG | + | chr4.3:82947337-82947356 | MS.gene98747:intron | 60.0% | |
| AATCACAGCGCCACCGCGAT+TGG | - | chr4.3:82948801-82948820 | None:intergenic | 60.0% | |
| GGAGCGGCACACTCATCAAG+CGG | - | chr4.3:82948152-82948171 | None:intergenic | 60.0% | |
| GGCTTCTCTGGTAGAACCGG+AGG | - | chr4.3:82947803-82947822 | None:intergenic | 60.0% | |
| TTCACCTCCCGACCGAACTC+TGG | + | chr4.3:82947366-82947385 | MS.gene98747:intron | 60.0% | |
| TTCGGTCGGGAGGTGAAGTC+TGG | - | chr4.3:82947363-82947382 | None:intergenic | 60.0% | |
| CGGGAGGTGAAGTCTGGCCA+AGG | - | chr4.3:82947357-82947376 | None:intergenic | 65.0% | |
| GGCCAAGGACTGCTCCAGCC+AGG | - | chr4.3:82947342-82947361 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 82946899 | 82950018 | 82946899 | ID=MS.gene98747 |
| chr4.3 | mRNA | 82946899 | 82950018 | 82946899 | ID=MS.gene98747.t1;Parent=MS.gene98747 |
| chr4.3 | exon | 82946899 | 82946947 | 82946899 | ID=MS.gene98747.t1.exon1;Parent=MS.gene98747.t1 |
| chr4.3 | CDS | 82946899 | 82946947 | 82946899 | ID=cds.MS.gene98747.t1;Parent=MS.gene98747.t1 |
| chr4.3 | exon | 82947040 | 82947200 | 82947040 | ID=MS.gene98747.t1.exon2;Parent=MS.gene98747.t1 |
| chr4.3 | CDS | 82947040 | 82947200 | 82947040 | ID=cds.MS.gene98747.t1;Parent=MS.gene98747.t1 |
| chr4.3 | exon | 82947602 | 82948144 | 82947602 | ID=MS.gene98747.t1.exon3;Parent=MS.gene98747.t1 |
| chr4.3 | CDS | 82947602 | 82948144 | 82947602 | ID=cds.MS.gene98747.t1;Parent=MS.gene98747.t1 |
| chr4.3 | exon | 82949206 | 82949385 | 82949206 | ID=MS.gene98747.t1.exon4;Parent=MS.gene98747.t1 |
| chr4.3 | CDS | 82949206 | 82949385 | 82949206 | ID=cds.MS.gene98747.t1;Parent=MS.gene98747.t1 |
| chr4.3 | exon | 82949874 | 82950018 | 82949874 | ID=MS.gene98747.t1.exon5;Parent=MS.gene98747.t1 |
| chr4.3 | CDS | 82949874 | 82950018 | 82949874 | ID=cds.MS.gene98747.t1;Parent=MS.gene98747.t1 |
| Gene Sequence |
| Protein sequence |
