Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98789.t1 | AXE71852.1 | 98 | 451 | 9 | 0 | 1 | 451 | 93 | 543 | 1.90E-273 | 951 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98789.t1 | Q9SFU3 | 75.7 | 441 | 104 | 1 | 1 | 441 | 86 | 523 | 3.6e-212 | 738.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98789.t1 | A0A344X2G7 | 98.0 | 451 | 9 | 0 | 1 | 451 | 93 | 543 | 1.4e-273 | 951.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056697 | MS.gene98789 | 0.803203 | 3.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 123 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACCACGTTGGGATTAT+TGG | 0.135113 | 3.4:-78645367 | MS.gene98789:CDS |
| CCAACTGTTTCAGGATTTAA+TGG | 0.159057 | 3.4:+78646320 | None:intergenic |
| GTTCTATATTCTCCCCAATT+TGG | 0.189329 | 3.4:+78646342 | None:intergenic |
| AATTTATCTGGTGTAGTTAA+TGG | 0.192467 | 3.4:+78644526 | None:intergenic |
| ACTATGCTACCAACTGTTTC+AGG | 0.207307 | 3.4:+78646311 | None:intergenic |
| TTCAGAACAATGCCAGTTTC+AGG | 0.221017 | 3.4:-78645599 | MS.gene98789:CDS |
| TGTACCTCCTCTGGCTTAAC+TGG | 0.252345 | 3.4:+78644203 | None:intergenic |
| AAACTCATGCATTATGGATT+TGG | 0.267207 | 3.4:-78644298 | MS.gene98789:CDS |
| TTTGCAGGAGAATTCCAAAT+TGG | 0.267563 | 3.4:-78646356 | None:intergenic |
| CAAATGGTTGGAAAAGGATT+TGG | 0.284128 | 3.4:-78644926 | MS.gene98789:CDS |
| TCAACCACGTTGGGATTATT+GGG | 0.287498 | 3.4:-78645366 | MS.gene98789:CDS |
| TCATCCTGATCTTATTCTAT+TGG | 0.289686 | 3.4:-78645486 | MS.gene98789:CDS |
| AGAATGAAACTCATGCATTA+TGG | 0.316248 | 3.4:-78644304 | MS.gene98789:CDS |
| TGATATTGATATAGTGTGTT+AGG | 0.341924 | 3.4:+78645665 | None:intergenic |
| ATTCCCTTCTATTACCATTA+CGG | 0.348130 | 3.4:+78645221 | None:intergenic |
| TCTGGTGTAGTTAATGGTTC+AGG | 0.348384 | 3.4:+78644532 | None:intergenic |
| TTCCCTTCTATTACCATTAC+GGG | 0.355427 | 3.4:+78645222 | None:intergenic |
| GAAGATTTACTATATAAATA+TGG | 0.358061 | 3.4:-78644793 | MS.gene98789:CDS |
| TAACTCTTGGGGCCTGAAAC+TGG | 0.358748 | 3.4:+78645587 | None:intergenic |
| GGACTTCACAACTATACTTC+TGG | 0.360812 | 3.4:-78646206 | MS.gene98789:CDS |
| CAGTTGGTGACGGTGGTAAT+CGG | 0.364627 | 3.4:-78644597 | MS.gene98789:CDS |
| AAGCCTCTCATAAATTTATC+TGG | 0.365817 | 3.4:+78644514 | None:intergenic |
| TTAACTGGTGGACACGTATC+AGG | 0.367650 | 3.4:+78644218 | None:intergenic |
| CAACAGAATTTACCTGTTGC+TGG | 0.368423 | 3.4:+78644466 | None:intergenic |
| AATGGTTCAGGACAGTTTCC+TGG | 0.369240 | 3.4:+78644544 | None:intergenic |
| GTGATGAAATTTACATTGTT+AGG | 0.371981 | 3.4:-78644244 | MS.gene98789:CDS |
| GTCCCCGTAATGGTAATAGA+AGG | 0.374867 | 3.4:-78645225 | MS.gene98789:CDS |
| GGTGTTGACATTGTCTTTAA+CGG | 0.387443 | 3.4:-78644772 | MS.gene98789:CDS |
| ATTCTGCTAGGGTAACTCTT+GGG | 0.401449 | 3.4:+78645575 | None:intergenic |
| GAATTTACCTGTTGCTGGAC+TGG | 0.401975 | 3.4:+78644471 | None:intergenic |
| TTGCAGGAGAATTCCAAATT+GGG | 0.404952 | 3.4:-78646355 | None:intergenic |
| AGGATTTGGCTTCTCTTGAC+AGG | 0.407338 | 3.4:-78644912 | MS.gene98789:CDS |
| TTATATTATTCTTTCAATGC+TGG | 0.411394 | 3.4:-78645105 | MS.gene98789:CDS |
| GCTAACATGTATCTTACTAA+TGG | 0.431678 | 3.4:-78645446 | MS.gene98789:CDS |
| GTTGGTAGCATAGTTCGATA+TGG | 0.432609 | 3.4:-78646302 | MS.gene98789:CDS |
| ATAGTTCGATATGGAAGGTT+TGG | 0.435648 | 3.4:-78646293 | MS.gene98789:CDS |
| AACGTGGTTGATATGTTTCA+TGG | 0.437111 | 3.4:+78645378 | None:intergenic |
| TATTTATTTATTCAGGTACA+TGG | 0.440064 | 3.4:-78645265 | MS.gene98789:intron |
| GATTCTGCTAGGGTAACTCT+TGG | 0.450391 | 3.4:+78645574 | None:intergenic |
| AGTTGGTGACGGTGGTAATC+GGG | 0.450621 | 3.4:-78644596 | MS.gene98789:CDS |
| TCACCAACTGTGATATAAAC+AGG | 0.450798 | 3.4:+78644610 | None:intergenic |
| CCTGATCTTATTCTATTGGT+TGG | 0.452498 | 3.4:-78645482 | MS.gene98789:CDS |
| CGCGAAAGCAGCTTCGGTCA+TGG | 0.456698 | 3.4:-78644415 | MS.gene98789:CDS |
| AACCGCAATCAAGACTTGTA+TGG | 0.458850 | 3.4:-78644275 | MS.gene98789:CDS |
| TCGCGAAAAGCACTATAATC+AGG | 0.460017 | 3.4:+78644433 | None:intergenic |
| TCAATACAAATGGTTGGAAA+AGG | 0.467825 | 3.4:-78644932 | MS.gene98789:CDS |
| ATAGAGAAGCGGAGTGTATG+AGG | 0.471491 | 3.4:-78644825 | MS.gene98789:CDS |
| TACATATCATACGACAAATC+AGG | 0.480296 | 3.4:-78645054 | MS.gene98789:intron |
| GATTTCTAGTGTCCCCGTAA+TGG | 0.483412 | 3.4:-78645235 | MS.gene98789:CDS |
| ATGTATCTTACTAATGGTAC+TGG | 0.488834 | 3.4:-78645440 | MS.gene98789:CDS |
| GCGAAAGCAGCTTCGGTCAT+GGG | 0.495435 | 3.4:-78644414 | MS.gene98789:CDS |
| TTGCAGGGGATCAATACAAA+TGG | 0.501518 | 3.4:-78644942 | MS.gene98789:intron |
| CGGTGGTAATCGGGAAAAGA+TGG | 0.501818 | 3.4:-78644587 | MS.gene98789:CDS |
| CCAACCACCGCGATTCTGCT+AGG | 0.502397 | 3.4:+78645563 | None:intergenic |
| TGAAACATATCAACCACGTT+GGG | 0.509239 | 3.4:-78645375 | MS.gene98789:CDS |
| TACACGGTTTGATCTCTCAT+AGG | 0.516734 | 3.4:+78644660 | None:intergenic |
| CCTAGCAGAATCGCGGTGGT+TGG | 0.516976 | 3.4:-78645563 | MS.gene98789:CDS |
| CAGCAACAGGTAAATTCTGT+TGG | 0.517767 | 3.4:-78644465 | MS.gene98789:CDS |
| TGATTTGTCGTATGATATGT+AGG | 0.519583 | 3.4:+78645056 | None:intergenic |
| ATCGCGGTGGTTGGAGACTT+AGG | 0.520583 | 3.4:-78645554 | MS.gene98789:CDS |
| AGCAACAGGTAAATTCTGTT+GGG | 0.525098 | 3.4:-78644464 | MS.gene98789:CDS |
| CAAGACTTGTATGGGACCGC+TGG | 0.527642 | 3.4:-78644266 | MS.gene98789:CDS |
| TCACTCATTGCTGACAAAGA+AGG | 0.529974 | 3.4:+78645632 | None:intergenic |
| TAGTTGTGAAGTCCTTCAAA+AGG | 0.534388 | 3.4:+78646215 | None:intergenic |
| CAGGGAAGTAACTCCGTGGC+TGG | 0.534766 | 3.4:-78644893 | MS.gene98789:CDS |
| CCAACCAATAGAATAAGATC+AGG | 0.548082 | 3.4:+78645482 | None:intergenic |
| GTTTATATCACAGTTGGTGA+CGG | 0.553418 | 3.4:-78644607 | MS.gene98789:CDS |
| TATTATTCTTTCAATGCTGG+AGG | 0.555597 | 3.4:-78645102 | MS.gene98789:CDS |
| CATTTCCGTCGGAAGAGAGT+GGG | 0.556408 | 3.4:-78645140 | MS.gene98789:CDS |
| ACCTCCTCTGGCTTAACTGG+TGG | 0.558777 | 3.4:+78644206 | None:intergenic |
| CAACCACCGCGATTCTGCTA+GGG | 0.562235 | 3.4:+78645564 | None:intergenic |
| GTAGCATAGTTCGATATGGA+AGG | 0.562459 | 3.4:-78646298 | MS.gene98789:CDS |
| ATACATCATGTTCGTATCAC+AGG | 0.563183 | 3.4:-78646179 | MS.gene98789:intron |
| TCAATGAATGGTCAAGCTGT+TGG | 0.563511 | 3.4:-78646266 | MS.gene98789:CDS |
| ACCGCAATCAAGACTTGTAT+GGG | 0.564499 | 3.4:-78644274 | MS.gene98789:CDS |
| TTCTGCTAGGGTAACTCTTG+GGG | 0.564752 | 3.4:+78645576 | None:intergenic |
| CATATGATTGACAGTGGATG+TGG | 0.567960 | 3.4:+78645517 | None:intergenic |
| TGCAGGAGAATTCCAAATTG+GGG | 0.570640 | 3.4:-78646354 | None:intergenic |
| GGTTGATATGTTTCATGGAT+GGG | 0.571689 | 3.4:+78645383 | None:intergenic |
| AAGCACTATAATCAGGCTGT+TGG | 0.574180 | 3.4:+78644440 | None:intergenic |
| TGGTTGATATGTTTCATGGA+TGG | 0.574734 | 3.4:+78645382 | None:intergenic |
| GCATTTCCGTCGGAAGAGAG+TGG | 0.574813 | 3.4:-78645141 | MS.gene98789:CDS |
| CCATTAAATCCTGAAACAGT+TGG | 0.578013 | 3.4:-78646320 | MS.gene98789:CDS |
| CACGTTGGGATTATTGGGGA+AGG | 0.579789 | 3.4:-78645361 | MS.gene98789:intron |
| ATTACTCATGCAGATGAACC+AGG | 0.587346 | 3.4:-78644562 | MS.gene98789:CDS |
| GGTCCTGTTTATATCACAGT+TGG | 0.588794 | 3.4:-78644613 | MS.gene98789:CDS |
| CAAGTCACATTATAGAGAAG+CGG | 0.590594 | 3.4:-78644836 | MS.gene98789:CDS |
| ACGGGGACACTAGAAATCAA+TGG | 0.590984 | 3.4:+78645240 | None:intergenic |
| TGTGATATAAACAGGACCGC+AGG | 0.599420 | 3.4:+78644618 | None:intergenic |
| TGCCACGTAGCTACCAGCCA+CGG | 0.601862 | 3.4:+78644880 | None:intergenic |
| AGGTTTGGAAGATCAATGAA+TGG | 0.603059 | 3.4:-78646278 | MS.gene98789:CDS |
| AGGGGATCAATACAAATGGT+TGG | 0.605512 | 3.4:-78644938 | MS.gene98789:CDS |
| CCAATGTGTAGTTATATACA+CGG | 0.612057 | 3.4:+78644644 | None:intergenic |
| TTCTCGATTTGCATTTCCGT+CGG | 0.613715 | 3.4:-78645151 | MS.gene98789:CDS |
| TAGCTACGTGGCATGCACCT+TGG | 0.617237 | 3.4:-78644870 | MS.gene98789:CDS |
| TCCCCGTAATGGTAATAGAA+GGG | 0.617941 | 3.4:-78645224 | MS.gene98789:CDS |
| GTGATATAAACAGGACCGCA+GGG | 0.618037 | 3.4:+78644619 | None:intergenic |
| GGATTTGGCTTCTCTTGACA+GGG | 0.619928 | 3.4:-78644911 | MS.gene98789:CDS |
| ACACCAGATAAATTTATGAG+AGG | 0.624521 | 3.4:-78644517 | MS.gene98789:CDS |
| TCCCATACAAGTCTTGATTG+CGG | 0.630219 | 3.4:+78644273 | None:intergenic |
| CAACCACGTTGGGATTATTG+GGG | 0.631636 | 3.4:-78645365 | MS.gene98789:CDS |
| GATGACCCACTCTCTTCCGA+CGG | 0.633166 | 3.4:+78645135 | None:intergenic |
| TAGAGAAGCGGAGTGTATGA+GGG | 0.635021 | 3.4:-78644824 | MS.gene98789:CDS |
| ATGAAACATATCAACCACGT+TGG | 0.640282 | 3.4:-78645376 | MS.gene98789:CDS |
| GGAGTGTATGAGGGTCGAGA+TGG | 0.640358 | 3.4:-78644815 | MS.gene98789:CDS |
| TATATCACAGTTGGTGACGG+TGG | 0.644765 | 3.4:-78644604 | MS.gene98789:CDS |
| CCGTGTATATAACTACACAT+TGG | 0.657117 | 3.4:-78644644 | MS.gene98789:CDS |
| TCCCTTCTATTACCATTACG+GGG | 0.657757 | 3.4:+78645223 | None:intergenic |
| CTCCGTGGCTGGTAGCTACG+TGG | 0.661238 | 3.4:-78644882 | MS.gene98789:CDS |
| GATATAGCTGACTATACACA+AGG | 0.671588 | 3.4:+78646237 | None:intergenic |
| AATGTAAATTTCATCACCAG+CGG | 0.671664 | 3.4:+78644250 | None:intergenic |
| TCCACCAGTTAAGCCAGAGG+AGG | 0.683049 | 3.4:-78644207 | MS.gene98789:CDS |
| TTACCCTAGCAGAATCGCGG+TGG | 0.701240 | 3.4:-78645567 | MS.gene98789:CDS |
| GAGTTACCCTAGCAGAATCG+CGG | 0.703295 | 3.4:-78645570 | MS.gene98789:CDS |
| GCTGATCATATGATTGACAG+TGG | 0.709409 | 3.4:+78645511 | None:intergenic |
| CTTCGGTCATGGGATCCTAG+AGG | 0.710224 | 3.4:-78644404 | MS.gene98789:intron |
| GTGTCCACCAGTTAAGCCAG+AGG | 0.713355 | 3.4:-78644210 | MS.gene98789:CDS |
| GACTTGTAAGTGCTGTACCA+AGG | 0.729494 | 3.4:+78644853 | None:intergenic |
| CTTCCCCAATAATCCCAACG+TGG | 0.733997 | 3.4:+78645362 | None:intergenic |
| AACTACACATTGGATCCCTG+CGG | 0.737988 | 3.4:-78644634 | MS.gene98789:CDS |
| ACACTATATCAATATCAATG+CGG | 0.747009 | 3.4:-78645659 | MS.gene98789:CDS |
| ATATAGCTGACTATACACAA+GGG | 0.747493 | 3.4:+78646238 | None:intergenic |
| TTGACAGGGAAGTAACTCCG+TGG | 0.756383 | 3.4:-78644897 | MS.gene98789:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGATTTACTATATAAATA+TGG | - | chr3.4:78645749-78645768 | MS.gene98789:intron | 15.0% |
| !! | TCTTGATTATTTATTTATTC+AGG | - | chr3.4:78645270-78645289 | MS.gene98789:intron | 15.0% |
| !! | ATACTAAAAGTGAATCAATA+AGG | + | chr3.4:78645565-78645584 | None:intergenic | 20.0% |
| !! | TATTTATTTATTCAGGTACA+TGG | - | chr3.4:78645277-78645296 | MS.gene98789:intron | 20.0% |
| !! | TTATATTATTCTTTCAATGC+TGG | - | chr3.4:78645437-78645456 | MS.gene98789:CDS | 20.0% |
| !!! | CTAATTTTTAATGAATGTTC+AGG | + | chr3.4:78644686-78644705 | None:intergenic | 20.0% |
| ! | AATTTATCTGGTGTAGTTAA+TGG | + | chr3.4:78646019-78646038 | None:intergenic | 25.0% |
| ! | ACACTATATCAATATCAATG+CGG | - | chr3.4:78644883-78644902 | MS.gene98789:CDS | 25.0% |
| ! | ATAACCTATAGCTACTAATT+TGG | + | chr3.4:78644430-78644449 | None:intergenic | 25.0% |
| ! | CTTACTTATATCTTACTAAG+TGG | - | chr3.4:78646192-78646211 | MS.gene98789:CDS | 25.0% |
| ! | GTGATGAAATTTACATTGTT+AGG | - | chr3.4:78646298-78646317 | MS.gene98789:CDS | 25.0% |
| ! | TGATATTGATATAGTGTGTT+AGG | + | chr3.4:78644880-78644899 | None:intergenic | 25.0% |
| ! | TTTCACATTAGATAACTACA+TGG | - | chr3.4:78644660-78644679 | MS.gene98789:CDS | 25.0% |
| !! | GGAATACATTTTATAATGCT+CGG | - | chr3.4:78645461-78645480 | MS.gene98789:CDS | 25.0% |
| !! | TTAGTTCTTCAAAAATAACC+AGG | + | chr3.4:78644821-78644840 | None:intergenic | 25.0% |
| !!! | TAATTTGACTTGAGATTTCT+TGG | - | chr3.4:78645223-78645242 | MS.gene98789:CDS | 25.0% |
| AAACTCATGCATTATGGATT+TGG | - | chr3.4:78646244-78646263 | MS.gene98789:CDS | 30.0% | |
| AAGCCTCTCATAAATTTATC+TGG | + | chr3.4:78646031-78646050 | None:intergenic | 30.0% | |
| AATGTAAATTTCATCACCAG+CGG | + | chr3.4:78646295-78646314 | None:intergenic | 30.0% | |
| ACACCAGATAAATTTATGAG+AGG | - | chr3.4:78646025-78646044 | MS.gene98789:intron | 30.0% | |
| ACACTTCAGAGATTTAGTTA+TGG | - | chr3.4:78644618-78644637 | MS.gene98789:CDS | 30.0% | |
| AGAATGAAACTCATGCATTA+TGG | - | chr3.4:78646238-78646257 | MS.gene98789:CDS | 30.0% | |
| ATAATTGTGTAGACTAGAGA+AGG | + | chr3.4:78646172-78646191 | None:intergenic | 30.0% | |
| ATATAGCTGACTATACACAA+GGG | + | chr3.4:78644307-78644326 | None:intergenic | 30.0% | |
| ATCCCCTGCAATAAAAAAAA+GGG | + | chr3.4:78645591-78645610 | None:intergenic | 30.0% | |
| ATGTATCTTACTAATGGTAC+TGG | - | chr3.4:78645102-78645121 | MS.gene98789:CDS | 30.0% | |
| ATTCCCTTCTATTACCATTA+CGG | + | chr3.4:78645324-78645343 | None:intergenic | 30.0% | |
| CACTTCAGAGATTTAGTTAT+GGG | - | chr3.4:78644619-78644638 | MS.gene98789:CDS | 30.0% | |
| CCAATGTGTAGTTATATACA+CGG | + | chr3.4:78645901-78645920 | None:intergenic | 30.0% | |
| GCTAACATGTATCTTACTAA+TGG | - | chr3.4:78645096-78645115 | MS.gene98789:CDS | 30.0% | |
| TACATATCATACGACAAATC+AGG | - | chr3.4:78645488-78645507 | MS.gene98789:CDS | 30.0% | |
| TATTATTCTTTCAATGCTGG+AGG | - | chr3.4:78645440-78645459 | MS.gene98789:CDS | 30.0% | |
| TCAATACAAATGGTTGGAAA+AGG | - | chr3.4:78645610-78645629 | MS.gene98789:CDS | 30.0% | |
| TCATCCTGATCTTATTCTAT+TGG | - | chr3.4:78645056-78645075 | MS.gene98789:CDS | 30.0% | |
| TTCTTACGAGAAAATTGAAC+AGG | - | chr3.4:78645853-78645872 | MS.gene98789:intron | 30.0% | |
| ! | GACACAACTCAAATTTTAAG+AGG | - | chr3.4:78644705-78644724 | MS.gene98789:intron | 30.0% |
| ! | TGATTTGTCGTATGATATGT+AGG | + | chr3.4:78645489-78645508 | None:intergenic | 30.0% |
| ! | TTAACACTTTGACTTAGTAC+AGG | - | chr3.4:78644390-78644409 | MS.gene98789:intron | 30.0% |
| !! | CAACTCAAATTTTAAGAGGA+AGG | - | chr3.4:78644709-78644728 | MS.gene98789:intron | 30.0% |
| !!! | ATCCCTTTTTTTTATTGCAG+GGG | - | chr3.4:78645586-78645605 | MS.gene98789:CDS | 30.0% |
| !!! | CATCCCTTTTTTTTATTGCA+GGG | - | chr3.4:78645585-78645604 | MS.gene98789:CDS | 30.0% |
| !!! | TCATCCCTTTTTTTTATTGC+AGG | - | chr3.4:78645584-78645603 | MS.gene98789:CDS | 30.0% |
| AGCAACAGGTAAATTCTGTT+GGG | - | chr3.4:78646078-78646097 | MS.gene98789:intron | 35.0% | |
| AGGTTTGGAAGATCAATGAA+TGG | - | chr3.4:78644264-78644283 | MS.gene98789:CDS | 35.0% | |
| ATACATCATGTTCGTATCAC+AGG | - | chr3.4:78644363-78644382 | MS.gene98789:intron | 35.0% | |
| ATAGTTCGATATGGAAGGTT+TGG | - | chr3.4:78644249-78644268 | MS.gene98789:CDS | 35.0% | |
| ATGAAACATATCAACCACGT+TGG | - | chr3.4:78645166-78645185 | MS.gene98789:CDS | 35.0% | |
| ATGGCCAAATTAGTAGCTAT+AGG | - | chr3.4:78644423-78644442 | MS.gene98789:CDS | 35.0% | |
| CAAATGGTTGGAAAAGGATT+TGG | - | chr3.4:78645616-78645635 | MS.gene98789:CDS | 35.0% | |
| CAAGTCACATTATAGAGAAG+CGG | - | chr3.4:78645706-78645725 | MS.gene98789:intron | 35.0% | |
| CCAACCAATAGAATAAGATC+AGG | + | chr3.4:78645063-78645082 | None:intergenic | 35.0% | |
| CCAACTGTTTCAGGATTTAA+TGG | + | chr3.4:78644225-78644244 | None:intergenic | 35.0% | |
| CCATTAAATCCTGAAACAGT+TGG | - | chr3.4:78644222-78644241 | MS.gene98789:CDS | 35.0% | |
| CCGTGTATATAACTACACAT+TGG | - | chr3.4:78645898-78645917 | MS.gene98789:intron | 35.0% | |
| CCTGATCTTATTCTATTGGT+TGG | - | chr3.4:78645060-78645079 | MS.gene98789:CDS | 35.0% | |
| GAGAAGGAAATATTACCTCT+AGG | + | chr3.4:78646156-78646175 | None:intergenic | 35.0% | |
| GAGGAAGGAAAGATTTGAAA+AGG | - | chr3.4:78644724-78644743 | MS.gene98789:intron | 35.0% | |
| GATATAGCTGACTATACACA+AGG | + | chr3.4:78644308-78644327 | None:intergenic | 35.0% | |
| GATCCCCTGCAATAAAAAAA+AGG | + | chr3.4:78645592-78645611 | None:intergenic | 35.0% | |
| GTTCTATATTCTCCCCAATT+TGG | + | chr3.4:78644203-78644222 | None:intergenic | 35.0% | |
| TAGTACAGGTACTAGTCATA+TGG | - | chr3.4:78644404-78644423 | MS.gene98789:intron | 35.0% | |
| TAGTTGTGAAGTCCTTCAAA+AGG | + | chr3.4:78644330-78644349 | None:intergenic | 35.0% | |
| TCACCAACTGTGATATAAAC+AGG | + | chr3.4:78645935-78645954 | None:intergenic | 35.0% | |
| TGAAACATATCAACCACGTT+GGG | - | chr3.4:78645167-78645186 | MS.gene98789:CDS | 35.0% | |
| TGTCTGTGTCAATATGTGTT+TGG | - | chr3.4:78644584-78644603 | MS.gene98789:CDS | 35.0% | |
| TTATGTACACCGATACTTCA+GGG | - | chr3.4:78644446-78644465 | MS.gene98789:CDS | 35.0% | |
| TTCCCTTCTATTACCATTAC+GGG | + | chr3.4:78645323-78645342 | None:intergenic | 35.0% | |
| ! | AACGTGGTTGATATGTTTCA+TGG | + | chr3.4:78645167-78645186 | None:intergenic | 35.0% |
| ! | AGTCAGCTATATCCTTTTGA+AGG | - | chr3.4:78644315-78644334 | MS.gene98789:intron | 35.0% |
| ! | CTTGGTTCATCATTTTCTTC+TGG | - | chr3.4:78645517-78645536 | MS.gene98789:CDS | 35.0% |
| ! | GGTTGATATGTTTCATGGAT+GGG | + | chr3.4:78645162-78645181 | None:intergenic | 35.0% |
| ! | TGAGTTGACTTAGAATGACT+AGG | + | chr3.4:78644781-78644800 | None:intergenic | 35.0% |
| ! | TGGACTGGAAGAAAAATTGA+AGG | + | chr3.4:78646059-78646078 | None:intergenic | 35.0% |
| ! | TGGTTGATATGTTTCATGGA+TGG | + | chr3.4:78645163-78645182 | None:intergenic | 35.0% |
| !! | GGTGTTGACATTGTCTTTAA+CGG | - | chr3.4:78645770-78645789 | MS.gene98789:intron | 35.0% |
| !! | GTTTATATCACAGTTGGTGA+CGG | - | chr3.4:78645935-78645954 | MS.gene98789:intron | 35.0% |
| !! | TGGTAGAGTAATTAACTTGC+AGG | - | chr3.4:78646212-78646231 | MS.gene98789:CDS | 35.0% |
| AACCGCAATCAAGACTTGTA+TGG | - | chr3.4:78646267-78646286 | MS.gene98789:CDS | 40.0% | |
| AAGCACTATAATCAGGCTGT+TGG | + | chr3.4:78646105-78646124 | None:intergenic | 40.0% | |
| AAGTCAAGCTTACATATGCC+TGG | - | chr3.4:78644800-78644819 | MS.gene98789:CDS | 40.0% | |
| ACCGCAATCAAGACTTGTAT+GGG | - | chr3.4:78646268-78646287 | MS.gene98789:CDS | 40.0% | |
| ACTATGCTACCAACTGTTTC+AGG | + | chr3.4:78644234-78644253 | None:intergenic | 40.0% | |
| AGGGGATCAATACAAATGGT+TGG | - | chr3.4:78645604-78645623 | MS.gene98789:CDS | 40.0% | |
| ATCAACCACGTTGGGATTAT+TGG | - | chr3.4:78645175-78645194 | MS.gene98789:CDS | 40.0% | |
| ATTACTCATGCAGATGAACC+AGG | - | chr3.4:78645980-78645999 | MS.gene98789:intron | 40.0% | |
| ATTCTGCTAGGGTAACTCTT+GGG | + | chr3.4:78644970-78644989 | None:intergenic | 40.0% | |
| CAACAGAATTTACCTGTTGC+TGG | + | chr3.4:78646079-78646098 | None:intergenic | 40.0% | |
| CAGCAACAGGTAAATTCTGT+TGG | - | chr3.4:78646077-78646096 | MS.gene98789:intron | 40.0% | |
| CATATGATTGACAGTGGATG+TGG | + | chr3.4:78645028-78645047 | None:intergenic | 40.0% | |
| CGACAAATCAGGTTAACTCT+TGG | - | chr3.4:78645499-78645518 | MS.gene98789:CDS | 40.0% | |
| GCTGATCATATGATTGACAG+TGG | + | chr3.4:78645034-78645053 | None:intergenic | 40.0% | |
| GGACTTCACAACTATACTTC+TGG | - | chr3.4:78644336-78644355 | MS.gene98789:intron | 40.0% | |
| GGTCCTGTTTATATCACAGT+TGG | - | chr3.4:78645929-78645948 | MS.gene98789:intron | 40.0% | |
| GTAGCATAGTTCGATATGGA+AGG | - | chr3.4:78644244-78644263 | MS.gene98789:CDS | 40.0% | |
| GTTATGTACACCGATACTTC+AGG | - | chr3.4:78644445-78644464 | MS.gene98789:CDS | 40.0% | |
| TACACGGTTTGATCTCTCAT+AGG | + | chr3.4:78645885-78645904 | None:intergenic | 40.0% | |
| TCAACCACGTTGGGATTATT+GGG | - | chr3.4:78645176-78645195 | MS.gene98789:CDS | 40.0% | |
| TCAATGAATGGTCAAGCTGT+TGG | - | chr3.4:78644276-78644295 | MS.gene98789:CDS | 40.0% | |
| TCACTCATTGCTGACAAAGA+AGG | + | chr3.4:78644913-78644932 | None:intergenic | 40.0% | |
| TCCCATACAAGTCTTGATTG+CGG | + | chr3.4:78646272-78646291 | None:intergenic | 40.0% | |
| TCCCCGTAATGGTAATAGAA+GGG | - | chr3.4:78645318-78645337 | MS.gene98789:intron | 40.0% | |
| TCCCTTCTATTACCATTACG+GGG | + | chr3.4:78645322-78645341 | None:intergenic | 40.0% | |
| TCTGGTGTAGTTAATGGTTC+AGG | + | chr3.4:78646013-78646032 | None:intergenic | 40.0% | |
| TTCAGAACAATGCCAGTTTC+AGG | - | chr3.4:78644943-78644962 | MS.gene98789:intron | 40.0% | |
| TTGCAGGGGATCAATACAAA+TGG | - | chr3.4:78645600-78645619 | MS.gene98789:CDS | 40.0% | |
| ! | CATGTTTTATGTACCTCCTC+TGG | + | chr3.4:78646351-78646370 | None:intergenic | 40.0% |
| ! | TTCTCGATTTGCATTTCCGT+CGG | - | chr3.4:78645391-78645410 | MS.gene98789:CDS | 40.0% |
| !! | GTTGGTAGCATAGTTCGATA+TGG | - | chr3.4:78644240-78644259 | MS.gene98789:CDS | 40.0% |
| !! | TCGCGAAAAGCACTATAATC+AGG | + | chr3.4:78646112-78646131 | None:intergenic | 40.0% |
| AACACCAAGGACTGACATGT+TGG | + | chr3.4:78644488-78644507 | None:intergenic | 45.0% | |
| AACTACACATTGGATCCCTG+CGG | - | chr3.4:78645908-78645927 | MS.gene98789:intron | 45.0% | |
| AATCCTGCAGCAAAGAGAGT+AGG | + | chr3.4:78644853-78644872 | None:intergenic | 45.0% | |
| AATGGTTCAGGACAGTTTCC+TGG | + | chr3.4:78646001-78646020 | None:intergenic | 45.0% | |
| ACACCAAGGACTGACATGTT+GGG | + | chr3.4:78644487-78644506 | None:intergenic | 45.0% | |
| ACGGGGACACTAGAAATCAA+TGG | + | chr3.4:78645305-78645324 | None:intergenic | 45.0% | |
| ATAGAGAAGCGGAGTGTATG+AGG | - | chr3.4:78645717-78645736 | MS.gene98789:intron | 45.0% | |
| CAACCACGTTGGGATTATTG+GGG | - | chr3.4:78645177-78645196 | MS.gene98789:CDS | 45.0% | |
| GAATTTACCTGTTGCTGGAC+TGG | + | chr3.4:78646074-78646093 | None:intergenic | 45.0% | |
| GATTCTGCTAGGGTAACTCT+TGG | + | chr3.4:78644971-78644990 | None:intergenic | 45.0% | |
| GATTTAGTTATGGGCGCGAA+AGG | - | chr3.4:78644628-78644647 | MS.gene98789:CDS | 45.0% | |
| GTCCCCGTAATGGTAATAGA+AGG | - | chr3.4:78645317-78645336 | MS.gene98789:intron | 45.0% | |
| GTGATATAAACAGGACCGCA+GGG | + | chr3.4:78645926-78645945 | None:intergenic | 45.0% | |
| TAGAGAAGCGGAGTGTATGA+GGG | - | chr3.4:78645718-78645737 | MS.gene98789:intron | 45.0% | |
| TGCCTTCAACCCTGAAGTAT+CGG | + | chr3.4:78644458-78644477 | None:intergenic | 45.0% | |
| TGTGATATAAACAGGACCGC+AGG | + | chr3.4:78645927-78645946 | None:intergenic | 45.0% | |
| TTCTGCTAGGGTAACTCTTG+GGG | + | chr3.4:78644969-78644988 | None:intergenic | 45.0% | |
| ! | AGGATTTGGCTTCTCTTGAC+AGG | - | chr3.4:78645630-78645649 | MS.gene98789:CDS | 45.0% |
| ! | GACTTGTAAGTGCTGTACCA+AGG | + | chr3.4:78645692-78645711 | None:intergenic | 45.0% |
| ! | GGATTTGGCTTCTCTTGACA+GGG | - | chr3.4:78645631-78645650 | MS.gene98789:CDS | 45.0% |
| ! | TTAACTGGTGGACACGTATC+AGG | + | chr3.4:78646327-78646346 | None:intergenic | 45.0% |
| ! | TTTTCTTCCAGTCCAGCAAC+AGG | - | chr3.4:78646064-78646083 | MS.gene98789:intron | 45.0% |
| !! | GATTTCTAGTGTCCCCGTAA+TGG | - | chr3.4:78645307-78645326 | MS.gene98789:intron | 45.0% |
| !! | TATATCACAGTTGGTGACGG+TGG | - | chr3.4:78645938-78645957 | MS.gene98789:intron | 45.0% |
| ACTCCTACTCTCTTTGCTGC+AGG | - | chr3.4:78644847-78644866 | MS.gene98789:CDS | 50.0% | |
| CACCGATACTTCAGGGTTGA+AGG | - | chr3.4:78644453-78644472 | MS.gene98789:CDS | 50.0% | |
| CACGTTGGGATTATTGGGGA+AGG | - | chr3.4:78645181-78645200 | MS.gene98789:CDS | 50.0% | |
| CATTTCCGTCGGAAGAGAGT+GGG | - | chr3.4:78645402-78645421 | MS.gene98789:CDS | 50.0% | |
| CGGTGGTAATCGGGAAAAGA+TGG | - | chr3.4:78645955-78645974 | MS.gene98789:intron | 50.0% | |
| CTTCCCCAATAATCCCAACG+TGG | + | chr3.4:78645183-78645202 | None:intergenic | 50.0% | |
| GAGTTACCCTAGCAGAATCG+CGG | - | chr3.4:78644972-78644991 | MS.gene98789:intron | 50.0% | |
| TAACTCTTGGGGCCTGAAAC+TGG | + | chr3.4:78644958-78644977 | None:intergenic | 50.0% | |
| TTGACAGGGAAGTAACTCCG+TGG | - | chr3.4:78645645-78645664 | MS.gene98789:CDS | 50.0% | |
| ! | GCTTTTCGCGAAAGCAGCTT+CGG | - | chr3.4:78646121-78646140 | MS.gene98789:intron | 50.0% |
| ! | TGTACCTCCTCTGGCTTAAC+TGG | + | chr3.4:78646342-78646361 | None:intergenic | 50.0% |
| !! | AGTTGGTGACGGTGGTAATC+GGG | - | chr3.4:78645946-78645965 | MS.gene98789:intron | 50.0% |
| !! | CAGTTGGTGACGGTGGTAAT+CGG | - | chr3.4:78645945-78645964 | MS.gene98789:intron | 50.0% |
| !! | CGCATGAGTGTTGAACACCA+AGG | + | chr3.4:78644501-78644520 | None:intergenic | 50.0% |
| ATCGCGGTGGTTGGAGACTT+AGG | - | chr3.4:78644988-78645007 | MS.gene98789:intron | 55.0% | |
| CAACCACCGCGATTCTGCTA+GGG | + | chr3.4:78644981-78645000 | None:intergenic | 55.0% | |
| CAAGACTTGTATGGGACCGC+TGG | - | chr3.4:78646276-78646295 | MS.gene98789:CDS | 55.0% | |
| CTTCGGTCATGGGATCCTAG+AGG | - | chr3.4:78646138-78646157 | MS.gene98789:intron | 55.0% | |
| GATGACCCACTCTCTTCCGA+CGG | + | chr3.4:78645410-78645429 | None:intergenic | 55.0% | |
| GCATTTCCGTCGGAAGAGAG+TGG | - | chr3.4:78645401-78645420 | MS.gene98789:CDS | 55.0% | |
| GCGAAAGCAGCTTCGGTCAT+GGG | - | chr3.4:78646128-78646147 | MS.gene98789:intron | 55.0% | |
| GGAGTGTATGAGGGTCGAGA+TGG | - | chr3.4:78645727-78645746 | MS.gene98789:intron | 55.0% | |
| GTGTCCACCAGTTAAGCCAG+AGG | - | chr3.4:78646332-78646351 | MS.gene98789:CDS | 55.0% | |
| TAGCTACGTGGCATGCACCT+TGG | - | chr3.4:78645672-78645691 | MS.gene98789:CDS | 55.0% | |
| TCCACCAGTTAAGCCAGAGG+AGG | - | chr3.4:78646335-78646354 | MS.gene98789:CDS | 55.0% | |
| TTACCCTAGCAGAATCGCGG+TGG | - | chr3.4:78644975-78644994 | MS.gene98789:intron | 55.0% | |
| ! | ACCTCCTCTGGCTTAACTGG+TGG | + | chr3.4:78646339-78646358 | None:intergenic | 55.0% |
| CAGGGAAGTAACTCCGTGGC+TGG | - | chr3.4:78645649-78645668 | MS.gene98789:CDS | 60.0% | |
| CCAACCACCGCGATTCTGCT+AGG | + | chr3.4:78644982-78645001 | None:intergenic | 60.0% | |
| CCTAGCAGAATCGCGGTGGT+TGG | - | chr3.4:78644979-78644998 | MS.gene98789:intron | 60.0% | |
| CGCGAAAGCAGCTTCGGTCA+TGG | - | chr3.4:78646127-78646146 | MS.gene98789:intron | 60.0% | |
| GCGCCCAACATGTCAGTCCT+TGG | - | chr3.4:78644481-78644500 | MS.gene98789:CDS | 60.0% | |
| TGCCACGTAGCTACCAGCCA+CGG | + | chr3.4:78645665-78645684 | None:intergenic | 60.0% | |
| CTCCGTGGCTGGTAGCTACG+TGG | - | chr3.4:78645660-78645679 | MS.gene98789:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78644193 | 78646371 | 78644193 | ID=MS.gene98789 |
| chr3.4 | mRNA | 78644193 | 78646371 | 78644193 | ID=MS.gene98789.t1;Parent=MS.gene98789 |
| chr3.4 | exon | 78646180 | 78646371 | 78646180 | ID=MS.gene98789.t1.exon1;Parent=MS.gene98789.t1 |
| chr3.4 | CDS | 78646180 | 78646371 | 78646180 | ID=cds.MS.gene98789.t1;Parent=MS.gene98789.t1 |
| chr3.4 | exon | 78645362 | 78645695 | 78645362 | ID=MS.gene98789.t1.exon2;Parent=MS.gene98789.t1 |
| chr3.4 | CDS | 78645362 | 78645695 | 78645362 | ID=cds.MS.gene98789.t1;Parent=MS.gene98789.t1 |
| chr3.4 | exon | 78645055 | 78645272 | 78645055 | ID=MS.gene98789.t1.exon3;Parent=MS.gene98789.t1 |
| chr3.4 | CDS | 78645055 | 78645272 | 78645055 | ID=cds.MS.gene98789.t1;Parent=MS.gene98789.t1 |
| chr3.4 | exon | 78644768 | 78644958 | 78644768 | ID=MS.gene98789.t1.exon4;Parent=MS.gene98789.t1 |
| chr3.4 | CDS | 78644768 | 78644958 | 78644768 | ID=cds.MS.gene98789.t1;Parent=MS.gene98789.t1 |
| chr3.4 | exon | 78644405 | 78644689 | 78644405 | ID=MS.gene98789.t1.exon5;Parent=MS.gene98789.t1 |
| chr3.4 | CDS | 78644405 | 78644689 | 78644405 | ID=cds.MS.gene98789.t1;Parent=MS.gene98789.t1 |
| chr3.4 | exon | 78644193 | 78644330 | 78644193 | ID=MS.gene98789.t1.exon6;Parent=MS.gene98789.t1 |
| chr3.4 | CDS | 78644193 | 78644330 | 78644193 | ID=cds.MS.gene98789.t1;Parent=MS.gene98789.t1 |
| Gene Sequence |
| Protein sequence |
