AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98906.t1 MTR_6g043850 87.737 685 61 4 1 683 1 664 0.0 1085
MS.gene98906.t1 MTR_4g053720 41.329 346 188 5 19 352 13 355 1.05e-81 263
MS.gene98906.t1 MTR_7g107280 34.321 405 236 7 31 422 33 420 7.49e-60 207
MS.gene98906.t1 MTR_8g089370 35.736 333 197 7 31 351 38 365 3.30e-51 182
MS.gene98906.t1 MTR_7g018630 32.308 325 199 8 36 351 63 375 1.41e-50 182
MS.gene98906.t1 MTR_6g033595 31.220 410 257 11 31 419 49 454 5.30e-41 156
MS.gene98906.t1 MTR_8g102038 33.455 275 122 6 19 281 13 238 2.35e-39 145
MS.gene98906.t1 MTR_1g072550 27.174 368 243 10 17 367 22 381 1.61e-37 144
MS.gene98906.t1 MTR_1g032040 27.249 389 242 10 4 367 9 381 1.81e-37 144
MS.gene98906.t1 MTR_1g032380 27.249 389 242 10 4 367 9 381 1.81e-37 144
MS.gene98906.t1 MTR_3g063230 27.666 347 210 8 32 351 54 386 1.98e-35 139
MS.gene98906.t1 MTR_1g019170 32.000 300 178 10 60 352 55 335 3.44e-34 135
MS.gene98906.t1 MTR_3g029990 32.107 299 177 10 60 351 55 334 4.50e-34 138
MS.gene98906.t1 MTR_3g029990 32.107 299 177 10 60 351 55 334 5.77e-34 138
MS.gene98906.t1 MTR_7g088530 30.030 333 210 7 31 351 47 368 9.51e-34 134
MS.gene98906.t1 MTR_3g105530 29.620 395 251 10 36 414 42 425 6.82e-33 132
MS.gene98906.t1 MTR_1g098960 31.333 300 180 10 60 352 57 337 2.17e-32 130
MS.gene98906.t1 MTR_3g030020 31.769 277 164 9 82 352 35 292 1.03e-30 124
MS.gene98906.t1 MTR_3g063230 26.687 326 216 8 32 351 54 362 1.73e-30 124
MS.gene98906.t1 MTR_2g067960 29.016 386 249 11 55 419 38 419 3.73e-30 124
MS.gene98906.t1 MTR_7g117270 24.668 377 254 8 36 397 92 453 1.65e-26 114
MS.gene98906.t1 MTR_0153s0070 30.640 297 184 8 32 312 45 335 2.70e-24 105
MS.gene98906.t1 MTR_3g074730 28.270 237 160 4 114 343 142 375 2.28e-23 103
MS.gene98906.t1 MTR_3g448960 26.629 353 207 13 4 352 8 312 1.20e-22 102
MS.gene98906.t1 MTR_0153s0070 29.368 269 172 6 36 290 19 283 1.85e-21 97.4
MS.gene98906.t1 MTR_3g083350 26.471 340 223 7 31 350 57 389 5.43e-19 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98906.t1 AT1G71850 53.747 387 163 5 27 406 28 405 9.98e-141 420
MS.gene98906.t1 AT4G24320 36.592 358 202 7 21 361 16 365 8.88e-69 230
MS.gene98906.t1 AT5G48040 35.890 365 223 6 31 389 40 399 4.59e-60 207
MS.gene98906.t1 AT3G58520 34.718 337 203 5 31 353 36 369 9.77e-59 204
MS.gene98906.t1 AT3G58520 33.631 336 196 6 31 353 36 357 1.91e-54 192
MS.gene98906.t1 AT2G39120 35.241 332 194 9 32 351 33 355 4.50e-50 179
MS.gene98906.t1 AT3G63090 28.451 355 246 5 4 351 12 365 2.60e-37 144
MS.gene98906.t1 AT4G33495 31.579 380 233 11 8 363 18 394 1.18e-36 142
MS.gene98906.t1 AT1G06440 30.000 390 234 12 4 372 17 388 2.01e-35 139
MS.gene98906.t1 AT2G31290 29.846 325 212 7 32 352 30 342 1.92e-34 136
MS.gene98906.t1 AT2G31290 29.846 325 212 7 32 352 30 342 1.92e-34 136
MS.gene98906.t1 AT5G45790 31.268 339 196 12 32 351 70 390 7.54e-32 129
MS.gene98906.t1 AT5G45790 32.509 283 160 9 84 351 39 305 8.48e-32 127
MS.gene98906.t1 AT4G01037 26.989 352 239 8 36 373 84 431 5.24e-30 125
MS.gene98906.t1 AT5G21970 28.440 327 219 8 32 348 57 378 2.34e-29 122
MS.gene98906.t1 AT5G21970 28.440 327 219 8 32 348 57 378 2.34e-29 122
MS.gene98906.t1 AT1G79120 26.866 335 225 5 32 350 64 394 3.43e-27 115
MS.gene98906.t1 AT1G79120 26.866 335 225 5 32 350 64 394 3.43e-27 115
MS.gene98906.t1 AT4G08940 32.331 266 167 7 83 343 121 378 6.62e-26 110
MS.gene98906.t1 AT5G62990 26.012 346 222 9 30 352 59 393 1.10e-20 96.3

Find 216 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTGGGAGTGGGTGGTGG+TGG 0.162573 6.2:+38676314 None:intergenic
GGGTGCGGAGGTGGAGGTGG+TGG 0.214476 6.2:+38676298 None:intergenic
GTCTGTTATTCCGGAGTTTC+CGG 0.227380 6.2:-38675839 MS.gene98906:CDS
TCGTGTTTGGAGAAGAAATA+TGG 0.261317 6.2:-38675742 MS.gene98906:CDS
GAAGTTTAAGAGGGTGATTT+TGG 0.266511 6.2:-38675446 MS.gene98906:CDS
AGTGGGTGGTGGTGGGGCGG+AGG 0.272329 6.2:+38676322 None:intergenic
GTGGAGGTGGTGGGAGTGGG+TGG 0.275328 6.2:+38676308 None:intergenic
GGAGGTGGAGGTGGTGGGAG+TGG 0.283046 6.2:+38676304 None:intergenic
GAGGTGGTGGGAGTGGGTGG+TGG 0.285957 6.2:+38676311 None:intergenic
AATCGGATAAGTGGGTTGTT+GGG 0.298405 6.2:-38675558 MS.gene98906:CDS
GATGGAGATTGGGAGGGATT+TGG 0.305399 6.2:+38676161 None:intergenic
CACGTTTCTTCCCCTTCTAT+TGG 0.321349 6.2:+38675000 None:intergenic
AATCAAGTTCTAACAATAGA+AGG 0.324884 6.2:-38674856 MS.gene98906:CDS
TGTCGATAATAATGCTGTTT+TGG 0.335006 6.2:-38675797 MS.gene98906:CDS
AATCGAATTCTAACAATAGA+AGG 0.340326 6.2:-38674583 MS.gene98906:CDS
AATCGAATTCTAACAATAGA+AGG 0.340326 6.2:-38674622 MS.gene98906:CDS
AATCGAATTCTAACAATAGA+AGG 0.340326 6.2:-38674661 MS.gene98906:CDS
AATCGAATTCTAACAATAGA+AGG 0.340326 6.2:-38674739 MS.gene98906:CDS
GGTGGGAGTGGGTGGTGGTG+GGG 0.341311 6.2:+38676316 None:intergenic
TGGTGGGAGTGGGTGGTGGT+GGG 0.342163 6.2:+38676315 None:intergenic
AAACAAATTCTTCCGATAGA+AGG 0.355101 6.2:-38674973 MS.gene98906:CDS
TTATGTTAAGTCTGTTATTC+CGG 0.356135 6.2:-38675848 MS.gene98906:CDS
AATCAAATTCTGCCAATAGA+AGG 0.358097 6.2:-38674700 MS.gene98906:CDS
GTAAAAGCTCTGCCAATAGA+AGG 0.358342 6.2:-38675054 MS.gene98906:CDS
TTAAGAAAGATGTTGCTGTT+AGG 0.358930 6.2:-38675960 MS.gene98906:CDS
AGAGGGTGCGGAGGTGGAGG+TGG 0.359922 6.2:+38676295 None:intergenic
TAAGAAAGATGTTGCTGTTA+GGG 0.362751 6.2:-38675959 MS.gene98906:CDS
AAAGTTTCTTCCCCTTCTAT+TGG 0.366964 6.2:+38674805 None:intergenic
AAAGTTTCTTCCCCTTCTAT+TGG 0.366964 6.2:+38674883 None:intergenic
AAAGTTTCTTCCCCTTCTAT+TGG 0.366964 6.2:+38674922 None:intergenic
ATAATCCGGCAATGGAGTTT+AGG 0.368923 6.2:-38675333 MS.gene98906:CDS
AAAGTTTCTTCCCCTTCTAT+TGG 0.370567 6.2:+38674688 None:intergenic
GGGAGTGGGTGGTGGTGGGG+CGG 0.372166 6.2:+38676319 None:intergenic
TGGGGCGGAAAGGGAGGTTA+AGG 0.374836 6.2:+38676121 None:intergenic
AAATGCGGATGAAAAGTTCT+TGG 0.377325 6.2:-38675998 MS.gene98906:CDS
TGGATAAGAAGTATGAGAAA+TGG 0.379568 6.2:-38675654 MS.gene98906:CDS
AATCGAATTCTACCAATAGA+AGG 0.381321 6.2:-38674817 MS.gene98906:CDS
GAAAGGGAGGTTAAGGGATT+GGG 0.387593 6.2:+38676128 None:intergenic
CATTCATCTCCCACGTTGAC+CGG 0.392084 6.2:+38674438 None:intergenic
GAGGTGGAGGTGGTGGGAGT+GGG 0.394061 6.2:+38676305 None:intergenic
CGCGTTCGACGGCGTGGTCG+AGG 0.397055 6.2:+38676238 None:intergenic
GATCGAATTCTACCAATAGA+AGG 0.403859 6.2:-38674934 MS.gene98906:CDS
CGGAGAAGAGGGTGCGGAGG+TGG 0.406569 6.2:+38676289 None:intergenic
GAATCGGATAAGTGGGTTGT+TGG 0.407335 6.2:-38675559 MS.gene98906:CDS
GTTGTTTCTTCCCCTTCTAT+TGG 0.410824 6.2:+38675042 None:intergenic
CGAGGCCGCGGTCGCGAACA+AGG 0.411095 6.2:+38676256 None:intergenic
AATCGAATTCTAACAATAGA+AGG 0.411754 6.2:-38674778 MS.gene98906:CDS
AAATGAATTCTGCCAATAGA+AGG 0.411910 6.2:-38675012 MS.gene98906:CDS
CTCCTCCTAAACTCCATTGC+CGG 0.415835 6.2:+38675328 None:intergenic
ATTGTTTGATGATGGAGATT+GGG 0.417990 6.2:+38676151 None:intergenic
AGAACACGCGATATCGTGTT+TGG 0.418799 6.2:-38675755 MS.gene98906:CDS
GAAAGGGCAAGGGAAGGAAT+TGG 0.420284 6.2:-38675710 MS.gene98906:CDS
GTGGGTGGTGGTGGGGCGGA+GGG 0.422135 6.2:+38676323 None:intergenic
TCATTTGATGAATACTGTTA+AGG 0.422626 6.2:-38675299 MS.gene98906:CDS
AATCGAACTCTACCAATAGA+AGG 0.423872 6.2:-38674895 MS.gene98906:CDS
GGATAAGAAGTATGAGAAAT+GGG 0.425814 6.2:-38675653 MS.gene98906:CDS
TTTGAAAGAGGATGAAAGTA+AGG 0.426018 6.2:-38675221 MS.gene98906:CDS
GGATTGGGATTGTTTGATGA+TGG 0.426430 6.2:+38676143 None:intergenic
AAAGGGCAAGGGAAGGAATT+GGG 0.426713 6.2:-38675709 MS.gene98906:CDS
TGAATTCGATGGGGCGGAAA+GGG 0.427442 6.2:+38676112 None:intergenic
GGTGCGGAGGTGGAGGTGGT+GGG 0.428806 6.2:+38676299 None:intergenic
CAAGAAAGATAAGGATGAGA+AGG 0.431026 6.2:-38675269 MS.gene98906:CDS
GATGGTTTGAAATGGGATCT+TGG 0.432347 6.2:-38675883 MS.gene98906:CDS
ATTCCTTTGAGTGTTGTTGA+TGG 0.432681 6.2:-38675901 MS.gene98906:CDS
TGATGAGGGAGAGGAGGGTG+AGG 0.433593 6.2:+38676196 None:intergenic
GGAGATTGGGAGGGATTTGG+TGG 0.438033 6.2:+38676164 None:intergenic
GATTGTTTGATGATGGAGAT+TGG 0.439828 6.2:+38676150 None:intergenic
AGAAGAGGGTGCGGAGGTGG+AGG 0.441218 6.2:+38676292 None:intergenic
GTGTTGTTGATGGTTTGAAA+TGG 0.443307 6.2:-38675891 MS.gene98906:CDS
TTTATGTGTCGAGTAAGAAT+AGG 0.445007 6.2:-38675408 MS.gene98906:CDS
GAATCGCGGGGAGGAGGAAG+AGG 0.449170 6.2:-38675176 MS.gene98906:CDS
GGAAAGGGAGGTTAAGGGAT+TGG 0.450941 6.2:+38676127 None:intergenic
GGTGGGGCGGAGGGAGAAGA+TGG 0.452125 6.2:+38676332 None:intergenic
TTTGCTTGTTGAGGATAATC+CGG 0.452154 6.2:-38675347 MS.gene98906:CDS
TAGAAGGGGAAGAAACTTAG+AGG 0.456526 6.2:-38674840 MS.gene98906:CDS
GTTTAGCGTCGAAGTTTAAG+AGG 0.459064 6.2:-38675456 MS.gene98906:CDS
GTGGTAAAATTCTTCGAAAA+CGG 0.459088 6.2:+38676074 None:intergenic
GAGTAAGAATAGGATGTATA+CGG 0.459698 6.2:-38675398 MS.gene98906:CDS
TGTTGTTGATGGTTTGAAAT+GGG 0.460077 6.2:-38675890 MS.gene98906:CDS
TTGATGATTGGTGAGTGGTT+GGG 0.461311 6.2:-38675478 MS.gene98906:CDS
CACCTCCGCACCCTCTTCTC+CGG 0.464374 6.2:-38676288 MS.gene98906:CDS
AACTCTGTCGAAATGAAGTT+AGG 0.464569 6.2:-38674515 MS.gene98906:CDS
TTTGAGAGATGGGTATAAGA+GGG 0.467739 6.2:-38675371 MS.gene98906:CDS
AACAAATTCTTCCGATAGAA+GGG 0.467975 6.2:-38674972 MS.gene98906:CDS
AAAGAGGATGAAAGTAAGGT+AGG 0.469880 6.2:-38675217 MS.gene98906:CDS
CGTGTTTGGAGAAGAAATAT+GGG 0.472256 6.2:-38675741 MS.gene98906:CDS
GAGTGGTTCGAGTGAGGAAT+CGG 0.473827 6.2:-38675575 MS.gene98906:CDS
ATCGGATAAGTGGGTTGTTG+GGG 0.474757 6.2:-38675557 MS.gene98906:CDS
AAACCCGTCGAAAATTGAAC+TGG 0.483691 6.2:+38675682 None:intergenic
TTTGATGATTGGTGAGTGGT+TGG 0.484252 6.2:-38675479 MS.gene98906:CDS
TAAGAGGGGTTTGCTTGTTG+AGG 0.484504 6.2:-38675356 MS.gene98906:CDS
AAGAAAGATAAGGATGAGAA+GGG 0.486207 6.2:-38675268 MS.gene98906:CDS
AAAAGAGGGTAATTTGAAAG+AGG 0.486421 6.2:-38675233 MS.gene98906:CDS
TGACGAGAATCGCGGGGAGG+AGG 0.489375 6.2:-38675182 MS.gene98906:CDS
CGACGGCGTGGTCGAGGCCG+CGG 0.489816 6.2:+38676244 None:intergenic
GATTCTCGCAGAGAGAGATC+AGG 0.490479 6.2:-38674473 MS.gene98906:CDS
AAGAGCGTGACGAGAATCGC+GGG 0.494065 6.2:-38675189 MS.gene98906:CDS
ATCAAATTCTGCCAATAGAA+GGG 0.495003 6.2:-38674699 MS.gene98906:CDS
GGTGGGTTCGTTGTTGATGA+GGG 0.498036 6.2:+38676182 None:intergenic
TAGAAGGAGAAGAAGCTTTG+AGG 0.498432 6.2:-38674762 MS.gene98906:CDS
CGCGGGGAGGAGGAAGAGGA+AGG 0.500739 6.2:-38675172 MS.gene98906:CDS
GGAAGATAGCAAGAAAGATA+AGG 0.502237 6.2:-38675278 MS.gene98906:CDS
GAAGAGGAGGAGTCGGCGAC+GGG 0.503989 6.2:-38675082 MS.gene98906:CDS
AGGGAGAGGAGGGTGAGGAG+AGG 0.505140 6.2:+38676201 None:intergenic
CGTTGTTGATGAGGGAGAGG+AGG 0.506803 6.2:+38676190 None:intergenic
CGAGTGAGGAATCGGATAAG+TGG 0.507309 6.2:-38675567 MS.gene98906:CDS
TGAAGGAGTGGAATGGTTTG+AGG 0.508297 6.2:-38675630 MS.gene98906:CDS
TTGAGAGATGGGTATAAGAG+GGG 0.509306 6.2:-38675370 MS.gene98906:CDS
TAGAAGGGGAAGAAGCTTTG+AGG 0.510359 6.2:-38674606 MS.gene98906:CDS
TAGAAGGGGAAGAAGCTTTG+AGG 0.510359 6.2:-38674645 MS.gene98906:CDS
GGGGATAAAGCGAAAGGGCA+AGG 0.511217 6.2:-38675721 MS.gene98906:CDS
TGGTGGGTTCGTTGTTGATG+AGG 0.511733 6.2:+38676181 None:intergenic
ACAGACTTAACATAATCATC+AGG 0.512102 6.2:+38675856 None:intergenic
TAGAAGGGGAAGAAACTTTG+AGG 0.516856 6.2:-38674957 MS.gene98906:CDS
ATCGAATTCTAACAATAGAA+GGG 0.519577 6.2:-38674582 MS.gene98906:CDS
ATCGAATTCTAACAATAGAA+GGG 0.519577 6.2:-38674621 MS.gene98906:CDS
ATCGAATTCTAACAATAGAA+GGG 0.519577 6.2:-38674660 MS.gene98906:CDS
ATCGAATTCTAACAATAGAA+GGG 0.519577 6.2:-38674738 MS.gene98906:CDS
ATCAAGTTCTAACAATAGAA+GGG 0.519987 6.2:-38674855 MS.gene98906:CDS
GAGATTGGGAGGGATTTGGT+GGG 0.522073 6.2:+38676165 None:intergenic
GGGGCGGAAAGGGAGGTTAA+GGG 0.525011 6.2:+38676122 None:intergenic
GGGATAAAGCGAAAGGGCAA+GGG 0.525194 6.2:-38675720 MS.gene98906:CDS
GATCAGGTGGGAAGGTTACC+CGG 0.525348 6.2:-38674457 MS.gene98906:CDS
TAGAAGGGGAAGAAACTTTG+AGG 0.525449 6.2:-38674684 MS.gene98906:CDS
TAGAAGGGGAAGAAACTTTG+AGG 0.525449 6.2:-38674801 MS.gene98906:CDS
TAGAAGGGGAAGAAACTTTG+AGG 0.525449 6.2:-38674879 MS.gene98906:CDS
TAGAAGGGGAAGAAACTTTG+AGG 0.525449 6.2:-38674918 MS.gene98906:CDS
GTTGTTGATGAGGGAGAGGA+GGG 0.527359 6.2:+38676191 None:intergenic
ATCGAATTCTACCAATAGAA+GGG 0.527663 6.2:-38674816 MS.gene98906:CDS
ATGAGAAATGGGTGAAGGAG+TGG 0.528928 6.2:-38675642 MS.gene98906:CDS
GTTCGTTGTTGATGAGGGAG+AGG 0.529539 6.2:+38676187 None:intergenic
ATGAATTCGATGGGGCGGAA+AGG 0.530377 6.2:+38676111 None:intergenic
ATCGAACTCTACCAATAGAA+GGG 0.532212 6.2:-38674894 MS.gene98906:CDS
GGTGAATGTGCCGGAGAAGA+GGG 0.533171 6.2:+38676278 None:intergenic
ATCGAATTCTACCAATAGAA+GGG 0.534483 6.2:-38674933 MS.gene98906:CDS
TAAAAGCTCTGCCAATAGAA+GGG 0.534898 6.2:-38675053 MS.gene98906:CDS
AAAGTTTCTTCCCCTTCTAT+CGG 0.537790 6.2:+38674961 None:intergenic
TCACCATCTTTATATTCACC+TGG 0.540850 6.2:+38674386 None:intergenic
CCAACAACACGAAAATGATC+CGG 0.547637 6.2:+38675820 None:intergenic
GGATGAAAGTAAGGTAGGAG+AGG 0.549198 6.2:-38675212 MS.gene98906:CDS
TTTGATGATGGAGATTGGGA+GGG 0.552213 6.2:+38676155 None:intergenic
ATTCATCTCCCACGTTGACC+GGG 0.552295 6.2:+38674439 None:intergenic
GCGAACAAGGGTGAATGTGC+CGG 0.553078 6.2:+38676269 None:intergenic
GGGTGAATGTGCCGGAGAAG+AGG 0.554608 6.2:+38676277 None:intergenic
AATGAATTCTGCCAATAGAA+GGG 0.554675 6.2:-38675011 MS.gene98906:CDS
CGAAAATGATCCGGAAACTC+CGG 0.556080 6.2:+38675829 None:intergenic
TAAAATTCTTCGAAAACGGA+AGG 0.556905 6.2:+38676078 None:intergenic
TTCACCCTTGTTCGCGACCG+CGG 0.561540 6.2:-38676261 MS.gene98906:CDS
AAACCAGGTGAATATAAAGA+TGG 0.562243 6.2:-38674389 MS.gene98906:CDS
AGAAGGGGAAGAAACTTTGA+GGG 0.563967 6.2:-38674956 MS.gene98906:CDS
AATTGTTGATGATTGCGAAA+GGG 0.566481 6.2:-38675930 MS.gene98906:CDS
ATCGAATTCTGTCAACAGAA+GGG 0.566585 6.2:-38674543 MS.gene98906:CDS
AAATTCACACCATTCTCATA+CGG 0.568606 6.2:+38675598 None:intergenic
AGATCCTCTAAAAGCAGAGA+GGG 0.568723 6.2:-38674344 MS.gene98906:CDS
TGAAGAGGAGGAGTCGGCGA+CGG 0.569515 6.2:-38675083 MS.gene98906:CDS
GGAAGAGGAAGGGAGTTGTG+AGG 0.570046 6.2:-38675161 MS.gene98906:CDS
GCGGGGAGGAGGAAGAGGAA+GGG 0.572376 6.2:-38675171 MS.gene98906:CDS
AATCGAATTCTGTCAACAGA+AGG 0.576857 6.2:-38674544 MS.gene98906:CDS
TAGAAGGGGAAGAAATTTCG+AGG 0.578130 6.2:-38674567 MS.gene98906:CDS
GAAGTATGAGAAATGGGTGA+AGG 0.579452 6.2:-38675647 MS.gene98906:CDS
TGATGATGAAGAGGAGGAGT+CGG 0.580808 6.2:-38675089 MS.gene98906:CDS
TAGAAGGGGAAGAAACTTCG+AGG 0.586377 6.2:-38674723 MS.gene98906:CDS
CTCGACACATAAAATATCCC+CGG 0.586519 6.2:+38675418 None:intergenic
ATTCGATGGGGCGGAAAGGG+AGG 0.587855 6.2:+38676115 None:intergenic
AAACCATCAACAACACTCAA+AGG 0.589221 6.2:+38675898 None:intergenic
ATCCGGCAATGGAGTTTAGG+AGG 0.589630 6.2:-38675330 MS.gene98906:CDS
AAATTGTTGATGATTGCGAA+AGG 0.592734 6.2:-38675931 MS.gene98906:CDS
ATGAATTCTGCCAATAGAAG+GGG 0.595624 6.2:-38675010 MS.gene98906:CDS
TCAAATTCTGCCAATAGAAG+GGG 0.598063 6.2:-38674698 MS.gene98906:CDS
TCTCGCAGAGAGAGATCAGG+TGG 0.599165 6.2:-38674470 MS.gene98906:CDS
CAGAGAGAGATCAGGTGGGA+AGG 0.600425 6.2:-38674465 MS.gene98906:CDS
ATGTGCCGGAGAAGAGGGTG+CGG 0.603026 6.2:+38676283 None:intergenic
TATGTGAGTCCGTATGAGAA+TGG 0.603754 6.2:-38675607 MS.gene98906:CDS
AATATGGGGATAAAGCGAAA+GGG 0.607037 6.2:-38675726 MS.gene98906:CDS
TCGAATTCTGTCAACAGAAG+GGG 0.607331 6.2:-38674542 MS.gene98906:CDS
GAGTGAGGAATCGGATAAGT+GGG 0.609253 6.2:-38675566 MS.gene98906:CDS
AAATATGGGGATAAAGCGAA+AGG 0.609949 6.2:-38675727 MS.gene98906:CDS
TTCGGATGAATTCGATGGGG+CGG 0.610074 6.2:+38676106 None:intergenic
TTAGAGGATCTTGATCGTTG+CGG 0.611588 6.2:+38674356 None:intergenic
CGGCAATGGAGTTTAGGAGG+AGG 0.612766 6.2:-38675327 MS.gene98906:CDS
TGCCGGAGAAGAGGGTGCGG+AGG 0.613886 6.2:+38676286 None:intergenic
TAAAGCGAAAGGGCAAGGGA+AGG 0.614170 6.2:-38675716 MS.gene98906:CDS
GAGGCTCAAAAGTGCAACCA+TGG 0.615575 6.2:+38676052 None:intergenic
TTTAGCGTCGAAGTTTAAGA+GGG 0.615887 6.2:-38675455 MS.gene98906:CDS
TGTTGAGGATAATCCGGCAA+TGG 0.617461 6.2:-38675341 MS.gene98906:CDS
TCGAATTCTAACAATAGAAG+GGG 0.619808 6.2:-38674581 MS.gene98906:CDS
TCGAATTCTAACAATAGAAG+GGG 0.619808 6.2:-38674620 MS.gene98906:CDS
TCGAATTCTAACAATAGAAG+GGG 0.619808 6.2:-38674659 MS.gene98906:CDS
TCGAATTCTAACAATAGAAG+GGG 0.619808 6.2:-38674737 MS.gene98906:CDS
TCGAATTCTACCAATAGAAG+GGG 0.619808 6.2:-38674815 MS.gene98906:CDS
TCAAGTTCTAACAATAGAAG+GGG 0.620219 6.2:-38674854 MS.gene98906:CDS
GGAAGGTTACCCGGTCAACG+TGG 0.620578 6.2:-38674448 MS.gene98906:CDS
GTTTGATGATGGAGATTGGG+AGG 0.622619 6.2:+38676154 None:intergenic
GAGGCCGCGGTCGCGAACAA+GGG 0.626507 6.2:+38676257 None:intergenic
TCGAATTCTACCAATAGAAG+GGG 0.626629 6.2:-38674932 MS.gene98906:CDS
TCGAACTCTACCAATAGAAG+GGG 0.626653 6.2:-38674893 MS.gene98906:CDS
GAAGAGCGTGACGAGAATCG+CGG 0.629170 6.2:-38675190 MS.gene98906:CDS
ACAAATTCTTCCGATAGAAG+GGG 0.632359 6.2:-38674971 MS.gene98906:CDS
GAATTTGAGTGGTTCGAGTG+AGG 0.634544 6.2:-38675581 MS.gene98906:CDS
AAAAGCTCTGCCAATAGAAG+GGG 0.636013 6.2:-38675052 MS.gene98906:CDS
GAGAATGGTGTGAATTTGAG+TGG 0.638610 6.2:-38675592 MS.gene98906:CDS
AAAATTCTTCGAAAACGGAA+GGG 0.639591 6.2:+38676079 None:intergenic
AAATGGGTGAAGGAGTGGAA+TGG 0.654103 6.2:-38675637 MS.gene98906:CDS
CAATAGAAGGGGAAGAAACG+TGG 0.658165 6.2:-38674999 MS.gene98906:CDS
GATATATCTTCACTAAACAA+CGG 0.662590 6.2:+38674301 None:intergenic
CTCGCAGAGAGAGATCAGGT+GGG 0.670453 6.2:-38674469 MS.gene98906:CDS
TCTCTGCGAGAATCACTCGA+AGG 0.673183 6.2:+38674482 None:intergenic
AGAGCGTGACGAGAATCGCG+GGG 0.680075 6.2:-38675188 MS.gene98906:CDS
TTTGCTGTGAGTTTAACATG+AGG 0.680538 6.2:+38676033 None:intergenic
AAAAGCTATTGACCTAAATG+CGG 0.685704 6.2:-38676013 MS.gene98906:CDS
GAAGGTTACCCGGTCAACGT+GGG 0.688774 6.2:-38674447 MS.gene98906:CDS
AAGATCCTCTAAAAGCAGAG+AGG 0.691624 6.2:-38674345 MS.gene98906:CDS
GTGTTTGGAGAAGAAATATG+GGG 0.692639 6.2:-38675740 MS.gene98906:CDS
GCGTGACGAGAATCGCGGGG+AGG 0.698453 6.2:-38675185 MS.gene98906:CDS
GCTCAAAAGTGCAACCATGG+TGG 0.699518 6.2:+38676055 None:intergenic
GATCCTCTAAAAGCAGAGAG+GGG 0.704496 6.2:-38674343 MS.gene98906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGATAATGTTTTGATGAT+TGG - chr6.2:38675165-38675184 MS.gene98906:CDS 20.0%
! AATCGAATTCTAACAATAGA+AGG - chr6.2:38675877-38675896 MS.gene98906:CDS 25.0%
! ATCGAATTCTAACAATAGAA+GGG - chr6.2:38675878-38675897 MS.gene98906:CDS 25.0%
! TCATTTGATGAATACTGTTA+AGG - chr6.2:38675356-38675375 MS.gene98906:CDS 25.0%
! TTATGTTAAGTCTGTTATTC+CGG - chr6.2:38674807-38674826 MS.gene98906:CDS 25.0%
!! AATCAAGTTCTAACAATAGA+AGG - chr6.2:38675799-38675818 MS.gene98906:CDS 25.0%
!! ATCAAGTTCTAACAATAGAA+GGG - chr6.2:38675800-38675819 MS.gene98906:CDS 25.0%
AAAAGAGGGTAATTTGAAAG+AGG - chr6.2:38675422-38675441 MS.gene98906:CDS 30.0%
AAAAGCTATTGACCTAAATG+CGG - chr6.2:38674642-38674661 MS.gene98906:CDS 30.0%
AAAATTCTTCGAAAACGGAA+GGG + chr6.2:38674579-38674598 None:intergenic 30.0%
AAACAAATTCTTCCGATAGA+AGG - chr6.2:38675682-38675701 MS.gene98906:CDS 30.0%
AAACCAGGTGAATATAAAGA+TGG - chr6.2:38676266-38676285 MS.gene98906:CDS 30.0%
AAATGAATTCTGCCAATAGA+AGG - chr6.2:38675643-38675662 MS.gene98906:CDS 30.0%
AAATTCACACCATTCTCATA+CGG + chr6.2:38675060-38675079 None:intergenic 30.0%
AACAAATTCTTCCGATAGAA+GGG - chr6.2:38675683-38675702 MS.gene98906:CDS 30.0%
AAGAAAGATAAGGATGAGAA+GGG - chr6.2:38675387-38675406 MS.gene98906:CDS 30.0%
AATCAAATTCTGCCAATAGA+AGG - chr6.2:38675955-38675974 MS.gene98906:CDS 30.0%
AATCGAATTCTACCAATAGA+AGG - chr6.2:38675838-38675857 MS.gene98906:CDS 30.0%
AATGAATTCTGCCAATAGAA+GGG - chr6.2:38675644-38675663 MS.gene98906:CDS 30.0%
ACAGACTTAACATAATCATC+AGG + chr6.2:38674802-38674821 None:intergenic 30.0%
ATCAAATTCTGCCAATAGAA+GGG - chr6.2:38675956-38675975 MS.gene98906:CDS 30.0%
ATCGAATTCTACCAATAGAA+GGG - chr6.2:38675722-38675741 MS.gene98906:CDS 30.0%
GAGTAAGAATAGGATGTATA+CGG - chr6.2:38675257-38675276 MS.gene98906:CDS 30.0%
GGAAAAACAAGTTCAAAAGA+GGG - chr6.2:38675408-38675427 MS.gene98906:CDS 30.0%
GTGGTAAAATTCTTCGAAAA+CGG + chr6.2:38674584-38674603 None:intergenic 30.0%
TAAAATTCTTCGAAAACGGA+AGG + chr6.2:38674580-38674599 None:intergenic 30.0%
TCGAATTCTAACAATAGAAG+GGG - chr6.2:38675879-38675898 MS.gene98906:CDS 30.0%
TCTAAAAGAATGCAAAAACC+AGG - chr6.2:38676251-38676270 MS.gene98906:CDS 30.0%
TTTATGTGTCGAGTAAGAAT+AGG - chr6.2:38675247-38675266 MS.gene98906:CDS 30.0%
TTTGAAAGAGGATGAAAGTA+AGG - chr6.2:38675434-38675453 MS.gene98906:CDS 30.0%
! GCATGAGATTTTGAATCTTT+TGG - chr6.2:38675125-38675144 MS.gene98906:CDS 30.0%
! GGATAAGAAGTATGAGAAAT+GGG - chr6.2:38675002-38675021 MS.gene98906:CDS 30.0%
! TAAGAAAGATGTTGCTGTTA+GGG - chr6.2:38674696-38674715 MS.gene98906:CDS 30.0%
! TATTTTCGGATGAATTCGAT+GGG + chr6.2:38674556-38674575 None:intergenic 30.0%
! TCAAGTTCTAACAATAGAAG+GGG - chr6.2:38675801-38675820 MS.gene98906:CDS 30.0%
! TGGATAAGAAGTATGAGAAA+TGG - chr6.2:38675001-38675020 MS.gene98906:CDS 30.0%
! TTAAGAAAGATGTTGCTGTT+AGG - chr6.2:38674695-38674714 MS.gene98906:CDS 30.0%
! TTTTCCAGTTCAATTTTCGA+CGG - chr6.2:38674969-38674988 MS.gene98906:CDS 30.0%
!! AAATTGTTGATGATTGCGAA+AGG - chr6.2:38674724-38674743 MS.gene98906:CDS 30.0%
!! AATTGTTGATGATTGCGAAA+GGG - chr6.2:38674725-38674744 MS.gene98906:CDS 30.0%
!! ATTGTTTGATGATGGAGATT+GGG + chr6.2:38674507-38674526 None:intergenic 30.0%
!! TGTCGATAATAATGCTGTTT+TGG - chr6.2:38674858-38674877 MS.gene98906:CDS 30.0%
!! TGTTGTTGATGGTTTGAAAT+GGG - chr6.2:38674765-38674784 MS.gene98906:CDS 30.0%
!!! TAATAATGCTGTTTTGGAAC+TGG - chr6.2:38674864-38674883 MS.gene98906:CDS 30.0%
AAACCATCAACAACACTCAA+AGG + chr6.2:38674760-38674779 None:intergenic 35.0%
AAAGAGGATGAAAGTAAGGT+AGG - chr6.2:38675438-38675457 MS.gene98906:CDS 35.0%
AAAGTTTCTTCCCCTTCTAT+CGG + chr6.2:38675697-38675716 None:intergenic 35.0%
AAAGTTTCTTCCCCTTCTAT+TGG + chr6.2:38675697-38675716 None:intergenic 35.0%
AAATATGGGGATAAAGCGAA+AGG - chr6.2:38674928-38674947 MS.gene98906:CDS 35.0%
AAATGCGGATGAAAAGTTCT+TGG - chr6.2:38674657-38674676 MS.gene98906:CDS 35.0%
AACTCTGTCGAAATGAAGTT+AGG - chr6.2:38676140-38676159 MS.gene98906:CDS 35.0%
AATATGGGGATAAAGCGAAA+GGG - chr6.2:38674929-38674948 MS.gene98906:CDS 35.0%
AATCGAACTCTACCAATAGA+AGG - chr6.2:38675760-38675779 MS.gene98906:CDS 35.0%
AATCGAATTCTGTCAACAGA+AGG - chr6.2:38676111-38676130 MS.gene98906:CDS 35.0%
ACAAATTCTTCCGATAGAAG+GGG - chr6.2:38675684-38675703 MS.gene98906:CDS 35.0%
ATCGAACTCTACCAATAGAA+GGG - chr6.2:38675761-38675780 MS.gene98906:CDS 35.0%
ATCGAATTCTGTCAACAGAA+GGG - chr6.2:38676112-38676131 MS.gene98906:CDS 35.0%
ATGAATTCTGCCAATAGAAG+GGG - chr6.2:38675645-38675664 MS.gene98906:CDS 35.0%
CAAGAAAGATAAGGATGAGA+AGG - chr6.2:38675386-38675405 MS.gene98906:CDS 35.0%
CGTGTTTGGAGAAGAAATAT+GGG - chr6.2:38674914-38674933 MS.gene98906:CDS 35.0%
GATCGAATTCTACCAATAGA+AGG - chr6.2:38675721-38675740 MS.gene98906:CDS 35.0%
GGAAGATAGCAAGAAAGATA+AGG - chr6.2:38675377-38675396 MS.gene98906:CDS 35.0%
GGGAAAAACAAGTTCAAAAG+AGG - chr6.2:38675407-38675426 MS.gene98906:CDS 35.0%
GTGTTTGGAGAAGAAATATG+GGG - chr6.2:38674915-38674934 MS.gene98906:CDS 35.0%
TAAAAGCTCTGCCAATAGAA+GGG - chr6.2:38675602-38675621 MS.gene98906:CDS 35.0%
TCAAATTCTGCCAATAGAAG+GGG - chr6.2:38675957-38675976 MS.gene98906:CDS 35.0%
TCACCATCTTTATATTCACC+TGG + chr6.2:38676272-38676291 None:intergenic 35.0%
TCGAATTCTACCAATAGAAG+GGG - chr6.2:38675723-38675742 MS.gene98906:CDS 35.0%
TCGTGTTTGGAGAAGAAATA+TGG - chr6.2:38674913-38674932 MS.gene98906:CDS 35.0%
TTTGAGAGATGGGTATAAGA+GGG - chr6.2:38675284-38675303 MS.gene98906:CDS 35.0%
! AGAACTTTTCATCCGCATTT+AGG + chr6.2:38674657-38674676 None:intergenic 35.0%
! ATTCCTTTGAGTGTTGTTGA+TGG - chr6.2:38674754-38674773 MS.gene98906:CDS 35.0%
! ATTTTCGGATGAATTCGATG+GGG + chr6.2:38674555-38674574 None:intergenic 35.0%
! GAAGTTTAAGAGGGTGATTT+TGG - chr6.2:38675209-38675228 MS.gene98906:CDS 35.0%
! GTATTTTCGGATGAATTCGA+TGG + chr6.2:38674557-38674576 None:intergenic 35.0%
! TCTTTTGGTGAGTAAGAAGA+CGG - chr6.2:38675140-38675159 MS.gene98906:CDS 35.0%
! TTCGAAGAATTTTACCACCA+TGG - chr6.2:38674586-38674605 MS.gene98906:CDS 35.0%
! TTTAGCGTCGAAGTTTAAGA+GGG - chr6.2:38675200-38675219 MS.gene98906:CDS 35.0%
! TTTCCAGTTCAATTTTCGAC+GGG - chr6.2:38674970-38674989 MS.gene98906:CDS 35.0%
! TTTGCTGTGAGTTTAACATG+AGG + chr6.2:38674625-38674644 None:intergenic 35.0%
! TTTGCTTGTTGAGGATAATC+CGG - chr6.2:38675308-38675327 MS.gene98906:CDS 35.0%
!! GATTGTTTGATGATGGAGAT+TGG + chr6.2:38674508-38674527 None:intergenic 35.0%
!! GTGTTGTTGATGGTTTGAAA+TGG - chr6.2:38674764-38674783 MS.gene98906:CDS 35.0%
!! TTTTGAGAGATGGGTATAAG+AGG - chr6.2:38675283-38675302 MS.gene98906:CDS 35.0%
!!! ATACGGTTGTTTTGAGAGAT+GGG - chr6.2:38675274-38675293 MS.gene98906:CDS 35.0%
!!! ATGTTTTGATGATTGGTGAG+TGG - chr6.2:38675172-38675191 MS.gene98906:CDS 35.0%
!!! TATACGGTTGTTTTGAGAGA+TGG - chr6.2:38675273-38675292 MS.gene98906:CDS 35.0%
AAAAGCTCTGCCAATAGAAG+GGG - chr6.2:38675603-38675622 MS.gene98906:CDS 40.0%
AAACCCGTCGAAAATTGAAC+TGG + chr6.2:38674976-38674995 None:intergenic 40.0%
AGAAGGGGAAGAAACTTTGA+GGG - chr6.2:38675699-38675718 MS.gene98906:CDS 40.0%
ATAATCCGGCAATGGAGTTT+AGG - chr6.2:38675322-38675341 MS.gene98906:CDS 40.0%
CCAACAACACGAAAATGATC+CGG + chr6.2:38674838-38674857 None:intergenic 40.0%
CTCGACACATAAAATATCCC+CGG + chr6.2:38675240-38675259 None:intergenic 40.0%
GAAGTATGAGAAATGGGTGA+AGG - chr6.2:38675008-38675027 MS.gene98906:CDS 40.0%
GAGAATGGTGTGAATTTGAG+TGG - chr6.2:38675063-38675082 MS.gene98906:CDS 40.0%
GGATTGGGATTGTTTGATGA+TGG + chr6.2:38674515-38674534 None:intergenic 40.0%
GTAAAAGCTCTGCCAATAGA+AGG - chr6.2:38675601-38675620 MS.gene98906:CDS 40.0%
TAGAAGGAGAAGAAGCTTTG+AGG - chr6.2:38675893-38675912 MS.gene98906:CDS 40.0%
TAGAAGGGGAAGAAACTTAG+AGG - chr6.2:38675815-38675834 MS.gene98906:CDS 40.0%
TAGAAGGGGAAGAAACTTTG+AGG - chr6.2:38675698-38675717 MS.gene98906:CDS 40.0%
TAGAAGGGGAAGAAATTTCG+AGG - chr6.2:38676088-38676107 MS.gene98906:CDS 40.0%
TATGTGAGTCCGTATGAGAA+TGG - chr6.2:38675048-38675067 MS.gene98906:CDS 40.0%
TCGAACTCTACCAATAGAAG+GGG - chr6.2:38675762-38675781 MS.gene98906:CDS 40.0%
TCGAATTCTGTCAACAGAAG+GGG - chr6.2:38676113-38676132 MS.gene98906:CDS 40.0%
TTAGAGGATCTTGATCGTTG+CGG + chr6.2:38676302-38676321 None:intergenic 40.0%
TTGAGAGATGGGTATAAGAG+GGG - chr6.2:38675285-38675304 MS.gene98906:CDS 40.0%
! AAGATCCTCTAAAAGCAGAG+AGG - chr6.2:38676310-38676329 MS.gene98906:CDS 40.0%
! AGATCCTCTAAAAGCAGAGA+GGG - chr6.2:38676311-38676330 MS.gene98906:CDS 40.0%
! CGATGATGATGATGATGAAG+AGG - chr6.2:38675557-38675576 MS.gene98906:CDS 40.0%
! GATGGTTTGAAATGGGATCT+TGG - chr6.2:38674772-38674791 MS.gene98906:CDS 40.0%
! GTTTAGCGTCGAAGTTTAAG+AGG - chr6.2:38675199-38675218 MS.gene98906:CDS 40.0%
! TGATGATGATGATGAAGAGG+AGG - chr6.2:38675560-38675579 MS.gene98906:CDS 40.0%
! TTGATGATTGGTGAGTGGTT+GGG - chr6.2:38675177-38675196 MS.gene98906:CDS 40.0%
! TTTGATGATTGGTGAGTGGT+TGG - chr6.2:38675176-38675195 MS.gene98906:CDS 40.0%
!! AATCGGATAAGTGGGTTGTT+GGG - chr6.2:38675097-38675116 MS.gene98906:CDS 40.0%
!! GTTGTTTCTTCCCCTTCTAT+TGG + chr6.2:38675616-38675635 None:intergenic 40.0%
!! TTTGATGATGGAGATTGGGA+GGG + chr6.2:38674503-38674522 None:intergenic 40.0%
!!! ATTTTCGACGGGTTTTGAGA+TGG - chr6.2:38674981-38675000 MS.gene98906:CDS 40.0%
!!! CGAAAACGGAAGGGTATTTT+CGG + chr6.2:38674570-38674589 None:intergenic 40.0%
!!! CTGTTTTGGAACTGGTTTGT+TGG - chr6.2:38674872-38674891 MS.gene98906:CDS 40.0%
AAAGGGCAAGGGAAGGAATT+GGG - chr6.2:38674946-38674965 MS.gene98906:CDS 45.0%
AAATGGGTGAAGGAGTGGAA+TGG - chr6.2:38675018-38675037 MS.gene98906:CDS 45.0%
AGAACACGCGATATCGTGTT+TGG - chr6.2:38674900-38674919 MS.gene98906:CDS 45.0%
ATGAGAAATGGGTGAAGGAG+TGG - chr6.2:38675013-38675032 MS.gene98906:CDS 45.0%
CAATAGAAGGGGAAGAAACG+TGG - chr6.2:38675656-38675675 MS.gene98906:CDS 45.0%
CACGTTTCTTCCCCTTCTAT+TGG + chr6.2:38675658-38675677 None:intergenic 45.0%
CGAAAATGATCCGGAAACTC+CGG + chr6.2:38674829-38674848 None:intergenic 45.0%
GAAAGGGAGGTTAAGGGATT+GGG + chr6.2:38674530-38674549 None:intergenic 45.0%
GAATTTGAGTGGTTCGAGTG+AGG - chr6.2:38675074-38675093 MS.gene98906:CDS 45.0%
GAGTGAGGAATCGGATAAGT+GGG - chr6.2:38675089-38675108 MS.gene98906:CDS 45.0%
GGATGAAAGTAAGGTAGGAG+AGG - chr6.2:38675443-38675462 MS.gene98906:CDS 45.0%
GTCTGTTATTCCGGAGTTTC+CGG - chr6.2:38674816-38674835 MS.gene98906:CDS 45.0%
TAGAAGGGGAAGAAACTTCG+AGG - chr6.2:38675932-38675951 MS.gene98906:CDS 45.0%
TAGAAGGGGAAGAAGCTTTG+AGG - chr6.2:38676010-38676029 MS.gene98906:CDS 45.0%
TGAAGGAGTGGAATGGTTTG+AGG - chr6.2:38675025-38675044 MS.gene98906:CDS 45.0%
TGTTGAGGATAATCCGGCAA+TGG - chr6.2:38675314-38675333 MS.gene98906:CDS 45.0%
! CCGGATCATTTTCGTGTTGT+TGG - chr6.2:38674835-38674854 MS.gene98906:CDS 45.0%
! GAGATTCTTTTCGCGTTCGA+CGG + chr6.2:38674431-38674450 None:intergenic 45.0%
! GATCCTCTAAAAGCAGAGAG+GGG - chr6.2:38676312-38676331 MS.gene98906:CDS 45.0%
! TAAGAGGGGTTTGCTTGTTG+AGG - chr6.2:38675299-38675318 MS.gene98906:CDS 45.0%
! TGATGATGAAGAGGAGGAGT+CGG - chr6.2:38675566-38675585 MS.gene98906:CDS 45.0%
!! ATCGGATAAGTGGGTTGTTG+GGG - chr6.2:38675098-38675117 MS.gene98906:CDS 45.0%
!! GAATCGGATAAGTGGGTTGT+TGG - chr6.2:38675096-38675115 MS.gene98906:CDS 45.0%
!! GTTTGATGATGGAGATTGGG+AGG + chr6.2:38674504-38674523 None:intergenic 45.0%
!! TAACCCCTCTCTGCTTTTAG+AGG + chr6.2:38676318-38676337 None:intergenic 45.0%
ATCCGGCAATGGAGTTTAGG+AGG - chr6.2:38675325-38675344 MS.gene98906:CDS 50.0%
ATGAATTCGATGGGGCGGAA+AGG + chr6.2:38674547-38674566 None:intergenic 50.0%
ATTCATCTCCCACGTTGACC+GGG + chr6.2:38676219-38676238 None:intergenic 50.0%
CATTCATCTCCCACGTTGAC+CGG + chr6.2:38676220-38676239 None:intergenic 50.0%
CGAGTGAGGAATCGGATAAG+TGG - chr6.2:38675088-38675107 MS.gene98906:CDS 50.0%
CTCCTCCTAAACTCCATTGC+CGG + chr6.2:38675330-38675349 None:intergenic 50.0%
GAAAGGGCAAGGGAAGGAAT+TGG - chr6.2:38674945-38674964 MS.gene98906:CDS 50.0%
GAGTGGTTCGAGTGAGGAAT+CGG - chr6.2:38675080-38675099 MS.gene98906:CDS 50.0%
GATGGAGATTGGGAGGGATT+TGG + chr6.2:38674497-38674516 None:intergenic 50.0%
GATTCTCGCAGAGAGAGATC+AGG - chr6.2:38676182-38676201 MS.gene98906:CDS 50.0%
GGAAAGGGAGGTTAAGGGAT+TGG + chr6.2:38674531-38674550 None:intergenic 50.0%
GGGATAAAGCGAAAGGGCAA+GGG - chr6.2:38674935-38674954 MS.gene98906:CDS 50.0%
TAAAGCGAAAGGGCAAGGGA+AGG - chr6.2:38674939-38674958 MS.gene98906:CDS 50.0%
TCTCTGCGAGAATCACTCGA+AGG + chr6.2:38676176-38676195 None:intergenic 50.0%
TGAATTCGATGGGGCGGAAA+GGG + chr6.2:38674546-38674565 None:intergenic 50.0%
TTCGGATGAATTCGATGGGG+CGG + chr6.2:38674552-38674571 None:intergenic 50.0%
! GAGATTGGGAGGGATTTGGT+GGG + chr6.2:38674493-38674512 None:intergenic 50.0%
! GAGGCTCAAAAGTGCAACCA+TGG + chr6.2:38674606-38674625 None:intergenic 50.0%
! GCTCAAAAGTGCAACCATGG+TGG + chr6.2:38674603-38674622 None:intergenic 50.0%
! GGTGGGTTCGTTGTTGATGA+GGG + chr6.2:38674476-38674495 None:intergenic 50.0%
! GTTCGTTGTTGATGAGGGAG+AGG + chr6.2:38674471-38674490 None:intergenic 50.0%
! GTTGTTGATGAGGGAGAGGA+GGG + chr6.2:38674467-38674486 None:intergenic 50.0%
!! TGGTGGGTTCGTTGTTGATG+AGG + chr6.2:38674477-38674496 None:intergenic 50.0%
!!! AGGGTGATTTTGGAGCATCC+GGG - chr6.2:38675219-38675238 MS.gene98906:CDS 50.0%
!!! GAGGGTGATTTTGGAGCATC+CGG - chr6.2:38675218-38675237 MS.gene98906:CDS 50.0%
CAGAGAGAGATCAGGTGGGA+AGG - chr6.2:38676190-38676209 MS.gene98906:CDS 55.0%
CGGCAATGGAGTTTAGGAGG+AGG - chr6.2:38675328-38675347 MS.gene98906:CDS 55.0%
CTCGCAGAGAGAGATCAGGT+GGG - chr6.2:38676186-38676205 MS.gene98906:CDS 55.0%
GAAGGTTACCCGGTCAACGT+GGG - chr6.2:38676208-38676227 MS.gene98906:CDS 55.0%
GATCAGGTGGGAAGGTTACC+CGG - chr6.2:38676198-38676217 MS.gene98906:CDS 55.0%
GCGAACAAGGGTGAATGTGC+CGG + chr6.2:38674389-38674408 None:intergenic 55.0%
GGAAGAGGAAGGGAGTTGTG+AGG - chr6.2:38675494-38675513 MS.gene98906:CDS 55.0%
GGAGATTGGGAGGGATTTGG+TGG + chr6.2:38674494-38674513 None:intergenic 55.0%
GGGGATAAAGCGAAAGGGCA+AGG - chr6.2:38674934-38674953 MS.gene98906:CDS 55.0%
GGTGAATGTGCCGGAGAAGA+GGG + chr6.2:38674380-38674399 None:intergenic 55.0%
TCTCGCAGAGAGAGATCAGG+TGG - chr6.2:38676185-38676204 MS.gene98906:CDS 55.0%
! AAGAGCGTGACGAGAATCGC+GGG - chr6.2:38675466-38675485 MS.gene98906:CDS 55.0%
! CGTTGTTGATGAGGGAGAGG+AGG + chr6.2:38674468-38674487 None:intergenic 55.0%
! GAAGAGCGTGACGAGAATCG+CGG - chr6.2:38675465-38675484 MS.gene98906:CDS 55.0%
!!! GGGTGATTTTGGAGCATCCG+GGG - chr6.2:38675220-38675239 MS.gene98906:CDS 55.0%
AGAGCGTGACGAGAATCGCG+GGG - chr6.2:38675467-38675486 MS.gene98906:CDS 60.0%
ATGTGCCGGAGAAGAGGGTG+CGG + chr6.2:38674375-38674394 None:intergenic 60.0%
ATTCGATGGGGCGGAAAGGG+AGG + chr6.2:38674543-38674562 None:intergenic 60.0%
GGAAGGTTACCCGGTCAACG+TGG - chr6.2:38676207-38676226 MS.gene98906:CDS 60.0%
GGGGCGGAAAGGGAGGTTAA+GGG + chr6.2:38674536-38674555 None:intergenic 60.0%
GGGTGAATGTGCCGGAGAAG+AGG + chr6.2:38674381-38674400 None:intergenic 60.0%
TGAAGAGGAGGAGTCGGCGA+CGG - chr6.2:38675572-38675591 MS.gene98906:CDS 60.0%
TGATGAGGGAGAGGAGGGTG+AGG + chr6.2:38674462-38674481 None:intergenic 60.0%
TGGGGCGGAAAGGGAGGTTA+AGG + chr6.2:38674537-38674556 None:intergenic 60.0%
TTCACCCTTGTTCGCGACCG+CGG - chr6.2:38674394-38674413 MS.gene98906:CDS 60.0%
! TCTTTTCGCGTTCGACGGCG+TGG + chr6.2:38674426-38674445 None:intergenic 60.0%
AGGGAGAGGAGGGTGAGGAG+AGG + chr6.2:38674457-38674476 None:intergenic 65.0%
CACCTCCGCACCCTCTTCTC+CGG - chr6.2:38674367-38674386 MS.gene98906:CDS 65.0%
GAAGAGGAGGAGTCGGCGAC+GGG - chr6.2:38675573-38675592 MS.gene98906:CDS 65.0%
GAATCGCGGGGAGGAGGAAG+AGG - chr6.2:38675479-38675498 MS.gene98906:CDS 65.0%
GCGGGGAGGAGGAAGAGGAA+GGG - chr6.2:38675484-38675503 MS.gene98906:CDS 65.0%
TGACGAGAATCGCGGGGAGG+AGG - chr6.2:38675473-38675492 MS.gene98906:CDS 65.0%
! AGAAGAGGGTGCGGAGGTGG+AGG + chr6.2:38674366-38674385 None:intergenic 65.0%
! TGGTGGGAGTGGGTGGTGGT+GGG + chr6.2:38674343-38674362 None:intergenic 65.0%
!! GAGGTGGAGGTGGTGGGAGT+GGG + chr6.2:38674353-38674372 None:intergenic 65.0%
CGCGGGGAGGAGGAAGAGGA+AGG - chr6.2:38675483-38675502 MS.gene98906:CDS 70.0%
GAGGCCGCGGTCGCGAACAA+GGG + chr6.2:38674401-38674420 None:intergenic 70.0%
GCGTGACGAGAATCGCGGGG+AGG - chr6.2:38675470-38675489 MS.gene98906:CDS 70.0%
GGTGCGGAGGTGGAGGTGGT+GGG + chr6.2:38674359-38674378 None:intergenic 70.0%
GGTGGGGCGGAGGGAGAAGA+TGG + chr6.2:38674326-38674345 None:intergenic 70.0%
! AGAGGGTGCGGAGGTGGAGG+TGG + chr6.2:38674363-38674382 None:intergenic 70.0%
! CGGAGAAGAGGGTGCGGAGG+TGG + chr6.2:38674369-38674388 None:intergenic 70.0%
! GGTGGGAGTGGGTGGTGGTG+GGG + chr6.2:38674342-38674361 None:intergenic 70.0%
! GTGGTGGGAGTGGGTGGTGG+TGG + chr6.2:38674344-38674363 None:intergenic 70.0%
! TGCCGGAGAAGAGGGTGCGG+AGG + chr6.2:38674372-38674391 None:intergenic 70.0%
!! GAGGTGGTGGGAGTGGGTGG+TGG + chr6.2:38674347-38674366 None:intergenic 70.0%
!! GGAGGTGGAGGTGGTGGGAG+TGG + chr6.2:38674354-38674373 None:intergenic 70.0%
!! GTGGAGGTGGTGGGAGTGGG+TGG + chr6.2:38674350-38674369 None:intergenic 70.0%
CGAGGCCGCGGTCGCGAACA+AGG + chr6.2:38674402-38674421 None:intergenic 75.0%
CGCGTTCGACGGCGTGGTCG+AGG + chr6.2:38674420-38674439 None:intergenic 75.0%
GGGTGCGGAGGTGGAGGTGG+TGG + chr6.2:38674360-38674379 None:intergenic 75.0%
!! AGTGGGTGGTGGTGGGGCGG+AGG + chr6.2:38674336-38674355 None:intergenic 75.0%
!! GGGAGTGGGTGGTGGTGGGG+CGG + chr6.2:38674339-38674358 None:intergenic 75.0%
!! GTGGGTGGTGGTGGGGCGGA+GGG + chr6.2:38674335-38674354 None:intergenic 75.0%
! CGACGGCGTGGTCGAGGCCG+CGG + chr6.2:38674414-38674433 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 38674313 38676364 38674313 ID=MS.gene98906
chr6.2 mRNA 38674313 38676364 38674313 ID=MS.gene98906.t1;Parent=MS.gene98906
chr6.2 exon 38674313 38676364 38674313 ID=MS.gene98906.t1.exon1;Parent=MS.gene98906.t1
chr6.2 CDS 38674313 38676364 38674313 ID=cds.MS.gene98906.t1;Parent=MS.gene98906.t1
Gene Sequence

>MS.gene98906

ATGCGCTTCACCATCTTCTCCCTCCGCCCCACCACCACCCACTCCCACCACCTCCACCTCCGCACCCTCTTCTCCGGCACATTCACCCTTGTTCGCGACCGCGGCCTCGACCACGCCGTCGAACGCGAAAAGAATCTCAAACCTCTCCTCACCCTCCTCTCCCTCATCAACAACGAACCCACCAAATCCCTCCCAATCTCCATCATCAAACAATCCCAATCCCTTAACCTCCCTTTCCGCCCCATCGAATTCATCCGAAAATACCCTTCCGTTTTCGAAGAATTTTACCACCATGGTTGCACTTTTGAGCCTCATGTTAAACTCACAGCAAAAGCTATTGACCTAAATGCGGATGAAAAGTTCTTGGTTGCTAGTGATGTTTTTAAGAAAGATGTTGCTGTTAGGGTTTTGAAATTGTTGATGATTGCGAAAGGGAATAAGATTCCTTTGAGTGTTGTTGATGGTTTGAAATGGGATCTTGGTCTTCCTGATGATTATGTTAAGTCTGTTATTCCGGAGTTTCCGGATCATTTTCGTGTTGTTGGTGTCGATAATAATGCTGTTTTGGAACTGGTTTGTTGGAGTAAAGAACACGCGATATCGTGTTTGGAGAAGAAATATGGGGATAAAGCGAAAGGGCAAGGGAAGGAATTGGGTTTTCCAGTTCAATTTTCGACGGGTTTTGAGATGGATAAGAAGTATGAGAAATGGGTGAAGGAGTGGAATGGTTTGAGGTATGTGAGTCCGTATGAGAATGGTGTGAATTTGAGTGGTTCGAGTGAGGAATCGGATAAGTGGGTTGTTGGGGTTTTGCATGAGATTTTGAATCTTTTGGTGAGTAAGAAGACGGAGAAAGATAATGTTTTGATGATTGGTGAGTGGTTGGGTTTAGCGTCGAAGTTTAAGAGGGTGATTTTGGAGCATCCGGGGATATTTTATGTGTCGAGTAAGAATAGGATGTATACGGTTGTTTTGAGAGATGGGTATAAGAGGGGTTTGCTTGTTGAGGATAATCCGGCAATGGAGTTTAGGAGGAGGTATATTCATTTGATGAATACTGTTAAGGAAGATAGCAAGAAAGATAAGGATGAGAAGGGAAAAACAAGTTCAAAAGAGGGTAATTTGAAAGAGGATGAAAGTAAGGTAGGAGAGGAAGAGCGTGACGAGAATCGCGGGGAGGAGGAAGAGGAAGGGAGTTGTGAGGAGTTGTCTGATGATGAAGATGAAGATGTTAGTGAAACTGTCGATGATGATGATGATGAAGAGGAGGAGTCGGCGACGGGTACTCGTAAAAGCTCTGCCAATAGAAGGGGAAGAAACAACTTTGTTGAAATGAATTCTGCCAATAGAAGGGGAAGAAACGTGGCAGAAACAAATTCTTCCGATAGAAGGGGAAGAAACTTTGAGGGATCGAATTCTACCAATAGAAGGGGAAGAAACTTTGAGGAATCGAACTCTACCAATAGAAGGGGAAGAAACTTTGAGGAATCAAGTTCTAACAATAGAAGGGGAAGAAACTTAGAGGAATCGAATTCTACCAATAGAAGGGGAAGAAACTTTGAGGAATCGAATTCTAACAATAGAAGGAGAAGAAGCTTTGAGGAATCGAATTCTAACAATAGAAGGGGAAGAAACTTCGAGGAATCAAATTCTGCCAATAGAAGGGGAAGAAACTTTGAGGAATCGAATTCTAACAATAGAAGGGGAAGAAGCTTTGAGGAATCGAATTCTAACAATAGAAGGGGAAGAAGCTTTGAGGAATCGAATTCTAACAATAGAAGGGGAAGAAATTTCGAGGAATCGAATTCTGTCAACAGAAGGGGAAGAAACTCTGTCGAAATGAAGTTAGGTACTGAAAAACCTTCGAGTGATTCTCGCAGAGAGAGATCAGGTGGGAAGGTTACCCGGTCAACGTGGGAGATGAATGCATCAGAAGTGTCTAAAAGAATGCAAAAACCAGGTGAATATAAAGATGGTGAAAGTTCGCCGCAACGATCAAGATCCTCTAAAAGCAGAGAGGGGTTATTAACTGTTAAGAAAACCGTTGTTTAG
Protein sequence

>MS.gene98906.t1

MRFTIFSLRPTTTHSHHLHLRTLFSGTFTLVRDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPISIIKQSQSLNLPFRPIEFIRKYPSVFEEFYHHGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLLMIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNNAVLELVCWSKEHAISCLEKKYGDKAKGQGKELGFPVQFSTGFEMDKKYEKWVKEWNGLRYVSPYENGVNLSGSSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASKFKRVILEHPGIFYVSSKNRMYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLMNTVKEDSKKDKDEKGKTSSKEGNLKEDESKVGEEERDENRGEEEEEGSCEELSDDEDEDVSETVDDDDDEEEESATGTRKSSANRRGRNNFVEMNSANRRGRNVAETNSSDRRGRNFEGSNSTNRRGRNFEESNSTNRRGRNFEESSSNNRRGRNLEESNSTNRRGRNFEESNSNNRRRRSFEESNSNNRRGRNFEESNSANRRGRNFEESNSNNRRGRSFEESNSNNRRGRSFEESNSNNRRGRNFEESNSVNRRGRNSVEMKLGTEKPSSDSRRERSGGKVTRSTWEMNASEVSKRMQKPGEYKDGESSPQRSRSSKSREGLLTVKKTVV