Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99015.t1 | RHN55279.1 | 97.4 | 536 | 14 | 0 | 1 | 536 | 57 | 592 | 4.4e-310 | 1072.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99015.t1 | Q3HRQ2 | 43.9 | 538 | 254 | 12 | 1 | 535 | 29 | 521 | 1.5e-119 | 431.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99015.t1 | G7K9S3 | 97.4 | 536 | 14 | 0 | 1 | 536 | 1 | 536 | 3.2e-310 | 1072.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052142 | MS.gene99015 | 0.801028 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99015.t1 | MTR_5g038410 | 97.388 | 536 | 14 | 0 | 1 | 536 | 1 | 536 | 0.0 | 1083 |
| MS.gene99015.t1 | MTR_7g114530 | 52.865 | 541 | 215 | 9 | 1 | 535 | 63 | 569 | 0.0 | 563 |
| MS.gene99015.t1 | MTR_3g113210 | 50.649 | 539 | 231 | 11 | 1 | 535 | 47 | 554 | 0.0 | 521 |
| MS.gene99015.t1 | MTR_1g023570 | 49.628 | 538 | 229 | 12 | 1 | 535 | 44 | 542 | 0.0 | 521 |
| MS.gene99015.t1 | MTR_6g004960 | 48.889 | 540 | 236 | 12 | 1 | 535 | 11 | 515 | 0.0 | 519 |
| MS.gene99015.t1 | MTR_3g075520 | 44.732 | 541 | 258 | 12 | 1 | 534 | 1 | 507 | 1.11e-151 | 444 |
| MS.gene99015.t1 | MTR_4g019520 | 44.424 | 538 | 248 | 13 | 1 | 535 | 42 | 531 | 3.23e-139 | 413 |
| MS.gene99015.t1 | MTR_8g102900 | 40.809 | 544 | 278 | 13 | 1 | 536 | 126 | 633 | 7.42e-133 | 400 |
| MS.gene99015.t1 | MTR_6g088300 | 39.416 | 548 | 288 | 12 | 1 | 536 | 70 | 585 | 6.00e-125 | 378 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99015.t1 | AT1G14430 | 55.904 | 542 | 200 | 9 | 1 | 535 | 55 | 564 | 0.0 | 574 |
| MS.gene99015.t1 | AT3G57620 | 52.700 | 537 | 215 | 8 | 1 | 536 | 49 | 547 | 0.0 | 569 |
| MS.gene99015.t1 | AT1G19900 | 48.803 | 543 | 232 | 13 | 1 | 536 | 45 | 548 | 9.83e-176 | 507 |
| MS.gene99015.t1 | AT1G75620 | 47.955 | 538 | 239 | 14 | 1 | 536 | 49 | 547 | 3.47e-168 | 488 |
| MS.gene99015.t1 | AT3G53950 | 44.259 | 540 | 252 | 12 | 1 | 535 | 48 | 543 | 6.15e-152 | 446 |
| MS.gene99015.t1 | AT5G19580 | 39.591 | 538 | 287 | 11 | 1 | 535 | 91 | 593 | 4.03e-135 | 405 |
| MS.gene99015.t1 | AT1G67290 | 40.260 | 539 | 284 | 12 | 1 | 535 | 110 | 614 | 6.33e-130 | 392 |
Find 178 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGCAAGGTCAAAATTT+TGG | 0.150199 | 5.4:+27668327 | MS.gene99015:CDS |
| ATGAACGGAATAGGGTAATA+AGG | 0.251533 | 5.4:+27667503 | MS.gene99015:CDS |
| TGAAGCCACCGGTTTGGATT+AGG | 0.260701 | 5.4:-27667144 | None:intergenic |
| CACATCGGCTTTATGACTTT+CGG | 0.263062 | 5.4:+27668028 | MS.gene99015:CDS |
| GCGTCGGTTTGTAGGGTTAA+AGG | 0.265253 | 5.4:-27667085 | None:intergenic |
| GGATTATCTTCGGCCGGATT+TGG | 0.268751 | 5.4:+27668092 | MS.gene99015:CDS |
| GATTGCGAATTCGGTTTATA+AGG | 0.271239 | 5.4:+27668386 | MS.gene99015:CDS |
| ATCTTCGACCGAACCGATTT+CGG | 0.273748 | 5.4:+27666944 | MS.gene99015:CDS |
| ACCGGGAAAGATTGCGAATT+CGG | 0.287671 | 5.4:+27668377 | MS.gene99015:CDS |
| ATCTGCGGCGGCGCGTTTCC+CGG | 0.288348 | 5.4:+27667646 | MS.gene99015:CDS |
| ACATCGGCTTTATGACTTTC+GGG | 0.308740 | 5.4:+27668029 | MS.gene99015:CDS |
| ACCGAATTCGCAATCTTTCC+CGG | 0.312214 | 5.4:-27668378 | None:intergenic |
| GAATTCCTAGTGTTGCTACT+TGG | 0.319731 | 5.4:+27668481 | MS.gene99015:CDS |
| TGTTTGATTATGAACGGAAT+AGG | 0.322017 | 5.4:+27667494 | MS.gene99015:CDS |
| TTCTCTTCACGAGGTATAAT+AGG | 0.331925 | 5.4:-27667532 | None:intergenic |
| TTTGGTTTCGGGAGCTCATT+AGG | 0.343756 | 5.4:+27668354 | MS.gene99015:CDS |
| CGTGGAACCGGAGTGGGTTA+TGG | 0.343769 | 5.4:+27667744 | MS.gene99015:CDS |
| TACAAAACCGGATACAAAAC+CGG | 0.346911 | 5.4:-27667880 | None:intergenic |
| AACAACTCAAATCTCATAAA+CGG | 0.347117 | 5.4:-27667922 | None:intergenic |
| GAAGCCACCGGTTTGGATTA+GGG | 0.353772 | 5.4:-27667143 | None:intergenic |
| TCTCTTAATGTGGCCCCACC+TGG | 0.359119 | 5.4:+27668429 | MS.gene99015:CDS |
| AGGCGTGAATGTTCGGAGTT+TGG | 0.361080 | 5.4:-27667179 | None:intergenic |
| CGACGCGTCGTTTAATCTCT+TGG | 0.371176 | 5.4:-27667344 | None:intergenic |
| GGCGAATGGTACGGCGGGTT+GGG | 0.371606 | 5.4:+27667843 | MS.gene99015:CDS |
| TTCGGTGTCGTTTATGTTGA+GGG | 0.372755 | 5.4:+27668182 | MS.gene99015:CDS |
| CGTCGTTGAAGCCACCGGTT+TGG | 0.377107 | 5.4:-27667150 | None:intergenic |
| GTTTGATTATGAACGGAATA+GGG | 0.380008 | 5.4:+27667495 | MS.gene99015:CDS |
| ATGTTGCCGTTGAATTTAAC+GGG | 0.384297 | 5.4:+27667586 | MS.gene99015:CDS |
| GTATCCGACCGAGTTGAGTT+TGG | 0.385529 | 5.4:+27668056 | MS.gene99015:CDS |
| CAATCACACGTGTTGTTATG+AGG | 0.393893 | 5.4:-27667205 | None:intergenic |
| TCGGATTCGTGTTTCGTTGG+TGG | 0.399431 | 5.4:+27668221 | MS.gene99015:CDS |
| TATGTTGCCGTTGAATTTAA+CGG | 0.399671 | 5.4:+27667585 | MS.gene99015:CDS |
| GTTGTAACGGCAACGGTTGT+TGG | 0.399842 | 5.4:-27666987 | None:intergenic |
| CATAAACGGGTTATCTGAAC+CGG | 0.400646 | 5.4:-27667908 | None:intergenic |
| GGGAGGTGAAGGAAGTTAAT+CGG | 0.401345 | 5.4:+27668202 | MS.gene99015:CDS |
| CTCATAACAACACGTGTGAT+TGG | 0.405663 | 5.4:+27667206 | MS.gene99015:CDS |
| TTGGATTAGGGTTCCGGTAG+GGG | 0.406261 | 5.4:-27667131 | None:intergenic |
| CGGCGAATGGTACGGCGGGT+TGG | 0.407931 | 5.4:+27667842 | MS.gene99015:CDS |
| ACCGGTTTGGATTAGGGTTC+CGG | 0.414578 | 5.4:-27667137 | None:intergenic |
| TCCGGTGCTGTCTCCCCTAC+CGG | 0.421141 | 5.4:+27667118 | MS.gene99015:CDS |
| ACTCAACTCGGTCGGATACT+TGG | 0.422355 | 5.4:-27668052 | None:intergenic |
| GAGGACAAGGCGTGAATGTT+CGG | 0.425225 | 5.4:-27667186 | None:intergenic |
| GATGTTGGAGGGACCGAAAT+CGG | 0.427515 | 5.4:-27666957 | None:intergenic |
| GTTTATAAGGCTATGGTTCG+TGG | 0.437167 | 5.4:+27668399 | MS.gene99015:CDS |
| GGCCGCAATGTGTCCAAATC+CGG | 0.439575 | 5.4:-27668105 | None:intergenic |
| TAGTAGTTGTGGGAGGTTGA+AGG | 0.440502 | 5.4:+27667714 | MS.gene99015:CDS |
| AATTCCTAGTGTTGCTACTT+GGG | 0.441705 | 5.4:+27668482 | MS.gene99015:CDS |
| TAGAAGCTTCTAGTAGTTGT+GGG | 0.442569 | 5.4:+27667704 | MS.gene99015:CDS |
| GTTGTTGGAGAGGGAGATGT+TGG | 0.443662 | 5.4:-27666972 | None:intergenic |
| TGAACGGAATAGGGTAATAA+GGG | 0.449583 | 5.4:+27667504 | MS.gene99015:CDS |
| GAGTTTGGATGCGTATTATC+CGG | 0.452450 | 5.4:+27668071 | MS.gene99015:CDS |
| ACAACTCAAATCTCATAAAC+GGG | 0.458281 | 5.4:-27667921 | None:intergenic |
| TTTGGATTAGGGTTCCGGTA+GGG | 0.458622 | 5.4:-27667132 | None:intergenic |
| GAAGGTTAGTGACGTGGAAC+CGG | 0.461696 | 5.4:+27667732 | MS.gene99015:CDS |
| AACACCAAGCGTCGGTTTGT+AGG | 0.462992 | 5.4:-27667093 | None:intergenic |
| GAACCGGGTTTGTACAAAAC+CGG | 0.466485 | 5.4:-27667892 | None:intergenic |
| GTAAAGATTATTCTCTTCAC+CGG | 0.467935 | 5.4:-27667410 | None:intergenic |
| CGTATTATCCGGATTATCTT+CGG | 0.468087 | 5.4:+27668082 | MS.gene99015:CDS |
| GTTGGAGAGGGAGATGTTGG+AGG | 0.480205 | 5.4:-27666969 | None:intergenic |
| GCCCGTGATTGTTGCGGTGG+AGG | 0.483184 | 5.4:+27668125 | MS.gene99015:CDS |
| CTAGAAGCTTCTAGTAGTTG+TGG | 0.485523 | 5.4:+27667703 | MS.gene99015:CDS |
| AGAATCTTTCTTCAAGTCGT+TGG | 0.486286 | 5.4:+27667242 | MS.gene99015:CDS |
| AAGAGAAATTATCCAAGTAC+TGG | 0.487044 | 5.4:+27667553 | MS.gene99015:CDS |
| TTTCATTACTTGCATGTGCA+TGG | 0.488438 | 5.4:-27666906 | None:intergenic |
| AAATCCGGCCGAAGATAATC+CGG | 0.490067 | 5.4:-27668090 | None:intergenic |
| TCCGGTAGGGGAGACAGCAC+CGG | 0.490844 | 5.4:-27667119 | None:intergenic |
| TCATAACAACACGTGTGATT+GGG | 0.490943 | 5.4:+27667207 | MS.gene99015:CDS |
| GACGCGTCGTTTAATCTCTT+GGG | 0.491758 | 5.4:-27667343 | None:intergenic |
| TAACCCTACAAACCGACGCT+TGG | 0.494194 | 5.4:+27667089 | MS.gene99015:CDS |
| ACACCAAGCGTCGGTTTGTA+GGG | 0.494396 | 5.4:-27667092 | None:intergenic |
| CCCACTAATATCCTGCCATC+TGG | 0.494870 | 5.4:-27667994 | None:intergenic |
| ACCTCCACCGCAACAATCAC+GGG | 0.498467 | 5.4:-27668126 | None:intergenic |
| CTCTTAATGTGGCCCCACCT+GGG | 0.498554 | 5.4:+27668430 | MS.gene99015:CDS |
| ACGACAATGATTCTACCGTT+TGG | 0.499172 | 5.4:-27667286 | None:intergenic |
| GGTTAAAGGACGGAGGGTGT+TGG | 0.499844 | 5.4:-27667071 | None:intergenic |
| TAAAGGACGGAGGGTGTTGG+TGG | 0.500447 | 5.4:-27667068 | None:intergenic |
| CTATTCTGTTTGATTATGAA+CGG | 0.501281 | 5.4:+27667488 | MS.gene99015:CDS |
| AAATGGGACGGAGTTTATTG+AGG | 0.502346 | 5.4:+27667612 | MS.gene99015:CDS |
| ATAACAGAAGAACCAGTACT+TGG | 0.505676 | 5.4:-27667565 | None:intergenic |
| TCGGTAAAAGATGCAAGAAC+GGG | 0.505729 | 5.4:-27667432 | None:intergenic |
| CAAACCGGTGGCTTCAACGA+CGG | 0.506529 | 5.4:+27667151 | MS.gene99015:CDS |
| TTTCGGGAGCTCATTAGGAC+CGG | 0.507324 | 5.4:+27668359 | MS.gene99015:CDS |
| GAACGGTGCGGCGAATGGTA+CGG | 0.507497 | 5.4:+27667834 | MS.gene99015:CDS |
| GGTAGAATCATTGTCGTTGG+TGG | 0.509315 | 5.4:+27667292 | MS.gene99015:CDS |
| ACCGGAACCCTAATCCAAAC+CGG | 0.511048 | 5.4:+27667136 | MS.gene99015:CDS |
| GTCGGTAAAAGTAACATATC+CGG | 0.511143 | 5.4:-27667793 | None:intergenic |
| AGAAGTTACCGCGTTGGAGG+AGG | 0.519931 | 5.4:+27668296 | MS.gene99015:CDS |
| TTTCGGTGTCGTTTATGTTG+AGG | 0.521318 | 5.4:+27668181 | MS.gene99015:CDS |
| GTGGGGCCACATTAAGAGAT+GGG | 0.524217 | 5.4:-27668425 | None:intergenic |
| TTTAGAAGTTACCGCGTTGG+AGG | 0.524323 | 5.4:+27668293 | MS.gene99015:CDS |
| GCCGGTGCCACGTGTCATGC+CGG | 0.525440 | 5.4:+27667774 | MS.gene99015:CDS |
| TAATCGGATTCGTGTTTCGT+TGG | 0.532143 | 5.4:+27668218 | MS.gene99015:CDS |
| GAATTCGGTTTATAAGGCTA+TGG | 0.534805 | 5.4:+27668392 | MS.gene99015:CDS |
| GTGGGTTATGGAGGTTATGC+CGG | 0.535502 | 5.4:+27667756 | MS.gene99015:CDS |
| TTTATAAGGCTATGGTTCGT+GGG | 0.535758 | 5.4:+27668400 | MS.gene99015:CDS |
| TTGGGAAAATGCAGCGAACC+CGG | 0.535916 | 5.4:+27667861 | MS.gene99015:CDS |
| AACCTCCACCGCAACAATCA+CGG | 0.537413 | 5.4:-27668127 | None:intergenic |
| GTTTGGATTAGGGTTCCGGT+AGG | 0.538142 | 5.4:-27667133 | None:intergenic |
| CTCACGCGAGATTCAAATCC+CGG | 0.538452 | 5.4:+27667391 | MS.gene99015:CDS |
| ACCGACGCTTGGTGTTCCTC+CGG | 0.538926 | 5.4:+27667100 | MS.gene99015:CDS |
| GTTTATGTTGAGGGAGGTGA+AGG | 0.546451 | 5.4:+27668191 | MS.gene99015:CDS |
| TCCGGCATGACACGTGGCAC+CGG | 0.552469 | 5.4:-27667775 | None:intergenic |
| GGTGGTGATGTCGTAGAGGA+TGG | 0.556855 | 5.4:-27667050 | None:intergenic |
| CTGTGTTGTTGCCAGATGGC+AGG | 0.558882 | 5.4:+27667983 | MS.gene99015:CDS |
| TGGAGGGACCGAAATCGGTT+CGG | 0.562922 | 5.4:-27666952 | None:intergenic |
| GGCCGGATTTGGACACATTG+CGG | 0.566436 | 5.4:+27668103 | MS.gene99015:CDS |
| AGTTTGAGAGCCATGTCGTG+AGG | 0.566612 | 5.4:-27667010 | None:intergenic |
| GTCGGTAAAAGATGCAAGAA+CGG | 0.568658 | 5.4:-27667433 | None:intergenic |
| AAAGCATATAATACCCAGGT+GGG | 0.569057 | 5.4:-27668443 | None:intergenic |
| CCATGTCGTGAGGGTTGTAA+CGG | 0.569335 | 5.4:-27667000 | None:intergenic |
| GTAACCGTCGTTGAAGCCAC+CGG | 0.572383 | 5.4:-27667155 | None:intergenic |
| CGGTGCGGCGAATGGTACGG+CGG | 0.573857 | 5.4:+27667837 | MS.gene99015:CDS |
| GCCAGATGGCAGGATATTAG+TGG | 0.574210 | 5.4:+27667993 | MS.gene99015:CDS |
| GGTGCGGCGAATGGTACGGC+GGG | 0.579689 | 5.4:+27667838 | MS.gene99015:CDS |
| TTCGGGAGCTCATTAGGACC+GGG | 0.579951 | 5.4:+27668360 | MS.gene99015:CDS |
| CTAGCATAATCAAACGCGCC+GGG | 0.580181 | 5.4:-27667664 | None:intergenic |
| ACTCGTTCGCGATGAATCAA+CGG | 0.580581 | 5.4:+27668262 | MS.gene99015:CDS |
| TCAGCTGTGTTGTTGCCAGA+TGG | 0.582035 | 5.4:+27667979 | MS.gene99015:CDS |
| TTGGAGAGGGAGATGTTGGA+GGG | 0.582218 | 5.4:-27666968 | None:intergenic |
| CACGTGTTGTTATGAGGACA+AGG | 0.582442 | 5.4:-27667199 | None:intergenic |
| CCGTTACAACCCTCACGACA+TGG | 0.584623 | 5.4:+27667000 | MS.gene99015:CDS |
| TAGTGACGTGGAACCGGAGT+GGG | 0.585014 | 5.4:+27667738 | MS.gene99015:CDS |
| CGAAAGTCATAAAGCCGATG+TGG | 0.585381 | 5.4:-27668027 | None:intergenic |
| ACGGCAACGGTTGTTGGAGA+GGG | 0.586247 | 5.4:-27666981 | None:intergenic |
| AACGGCAACGGTTGTTGGAG+AGG | 0.586360 | 5.4:-27666982 | None:intergenic |
| TACATCCTTGGTGTACTCGC+TGG | 0.588172 | 5.4:-27667949 | None:intergenic |
| GGTGGGGCCACATTAAGAGA+TGG | 0.589155 | 5.4:-27668426 | None:intergenic |
| AACGGTAGAATCATTGTCGT+TGG | 0.591020 | 5.4:+27667289 | MS.gene99015:CDS |
| ACAAAACCGGATACAAAACC+GGG | 0.602410 | 5.4:-27667879 | None:intergenic |
| GCTGATGAATGATACATCCT+TGG | 0.605224 | 5.4:-27667961 | None:intergenic |
| TCGAATCAGATTCTACCAAA+CGG | 0.605478 | 5.4:+27667271 | MS.gene99015:CDS |
| GTTTGAGAGCCATGTCGTGA+GGG | 0.606458 | 5.4:-27667009 | None:intergenic |
| TAAAGATTATTCTCTTCACC+GGG | 0.608057 | 5.4:-27667409 | None:intergenic |
| AAAATAATCACATTCCCCGT+CGG | 0.611548 | 5.4:-27667811 | None:intergenic |
| CCAGATGGCAGGATATTAGT+GGG | 0.612291 | 5.4:+27667994 | MS.gene99015:CDS |
| ATGGCAGGATATTAGTGGGT+GGG | 0.616322 | 5.4:+27667998 | MS.gene99015:CDS |
| GCGGCCCGTGATTGTTGCGG+TGG | 0.618565 | 5.4:+27668122 | MS.gene99015:CDS |
| TTGTAGGGTTAAAGGACGGA+GGG | 0.626942 | 5.4:-27667077 | None:intergenic |
| TAATTTCTCTTCTCTTCACG+AGG | 0.627182 | 5.4:-27667541 | None:intergenic |
| AACATATCCGGCATGACACG+TGG | 0.628719 | 5.4:-27667781 | None:intergenic |
| TGGGGCCACATTAAGAGATG+GGG | 0.629427 | 5.4:-27668424 | None:intergenic |
| TGAACCCAAGTAGCAACACT+AGG | 0.630118 | 5.4:-27668486 | None:intergenic |
| TTATCCGGATTATCTTCGGC+CGG | 0.632081 | 5.4:+27668086 | MS.gene99015:CDS |
| GGGGCCACATTAAGAGATGG+GGG | 0.634982 | 5.4:-27668423 | None:intergenic |
| GGAACCGGAGTGGGTTATGG+AGG | 0.636417 | 5.4:+27667747 | MS.gene99015:CDS |
| ATTGCGGCCCGTGATTGTTG+CGG | 0.636678 | 5.4:+27668119 | MS.gene99015:CDS |
| ACTAGCATAATCAAACGCGC+CGG | 0.640238 | 5.4:-27667665 | None:intergenic |
| ATAAACGGGTTATCTGAACC+GGG | 0.642464 | 5.4:-27667907 | None:intergenic |
| CGTGAGGGTTGTAACGGCAA+CGG | 0.643632 | 5.4:-27666994 | None:intergenic |
| GGTAGGGGAGACAGCACCGG+AGG | 0.648729 | 5.4:-27667116 | None:intergenic |
| GGTGTCGTTTATGTTGAGGG+AGG | 0.650463 | 5.4:+27668185 | MS.gene99015:CDS |
| GAAAGTCATAAAGCCGATGT+GGG | 0.650701 | 5.4:-27668026 | None:intergenic |
| ACCGGAGGAACACCAAGCGT+CGG | 0.652487 | 5.4:-27667101 | None:intergenic |
| GATGGCAGGATATTAGTGGG+TGG | 0.653321 | 5.4:+27667997 | MS.gene99015:CDS |
| ATAACCTCCATAACCCACTC+CGG | 0.655023 | 5.4:-27667751 | None:intergenic |
| GCATCCAAACTCAACTCGGT+CGG | 0.656619 | 5.4:-27668060 | None:intergenic |
| GAGGTTGTGAATTCTATGCA+AGG | 0.658114 | 5.4:+27668315 | MS.gene99015:CDS |
| AAGCTTCTAGTAGTTGTGGG+AGG | 0.659013 | 5.4:+27667707 | MS.gene99015:CDS |
| TTTGTAGGGTTAAAGGACGG+AGG | 0.667619 | 5.4:-27667078 | None:intergenic |
| CGGTTTGTAGGGTTAAAGGA+CGG | 0.668642 | 5.4:-27667081 | None:intergenic |
| TGTTGGTGGTGATGTCGTAG+AGG | 0.669463 | 5.4:-27667054 | None:intergenic |
| ATACGCATCCAAACTCAACT+CGG | 0.671359 | 5.4:-27668064 | None:intergenic |
| GAGGTTGAAGGTTAGTGACG+TGG | 0.684584 | 5.4:+27667726 | MS.gene99015:CDS |
| GTTGAGATTATGATCTGCGG+CGG | 0.685800 | 5.4:+27667634 | MS.gene99015:CDS |
| TTAGTGACGTGGAACCGGAG+TGG | 0.687761 | 5.4:+27667737 | MS.gene99015:CDS |
| TGTTGCCGTTGAATTTAACG+GGG | 0.701387 | 5.4:+27667587 | MS.gene99015:CDS |
| GTCGTAGAGGATGGAATGAG+CGG | 0.703707 | 5.4:-27667041 | None:intergenic |
| GAGGTTGAGATTATGATCTG+CGG | 0.705733 | 5.4:+27667631 | MS.gene99015:CDS |
| GGAACCCTAATCCAAACCGG+TGG | 0.715921 | 5.4:+27667139 | MS.gene99015:CDS |
| TGGGTGGGAGTAACCCACAT+CGG | 0.717587 | 5.4:+27668013 | MS.gene99015:CDS |
| AAGCATATAATACCCAGGTG+GGG | 0.721642 | 5.4:-27668442 | None:intergenic |
| AATCAAACAGAATAGAACGA+CGG | 0.729553 | 5.4:-27667480 | None:intergenic |
| AAAAGCATATAATACCCAGG+TGG | 0.730356 | 5.4:-27668444 | None:intergenic |
| AACGAGTGAGTAGTAAACGA+CGG | 0.739070 | 5.4:-27668246 | None:intergenic |
| AAGATGAAAAGATTCCCCGT+CGG | 0.739432 | 5.4:-27667451 | None:intergenic |
| TAGCACCAGCGAGTACACCA+AGG | 0.745866 | 5.4:+27667944 | MS.gene99015:CDS |
| CAACACTAGGAATTCCAGCG+TGG | 0.773908 | 5.4:-27668473 | None:intergenic |
| ATTCACAACCTCCTCCAACG+CGG | 0.779926 | 5.4:-27668304 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACAACTCAAATCTCATAAA+CGG | - | chr5.4:27667925-27667944 | None:intergenic | 25.0% |
| ! | CTATTCTGTTTGATTATGAA+CGG | + | chr5.4:27667488-27667507 | MS.gene99015:CDS | 25.0% |
| ! | TGATTATGCTAGTAAAAAGA+AGG | + | chr5.4:27667675-27667694 | MS.gene99015:CDS | 25.0% |
| AAGAGAAATTATCCAAGTAC+TGG | + | chr5.4:27667553-27667572 | MS.gene99015:CDS | 30.0% | |
| AATCAAACAGAATAGAACGA+CGG | - | chr5.4:27667483-27667502 | None:intergenic | 30.0% | |
| ACAACTCAAATCTCATAAAC+GGG | - | chr5.4:27667924-27667943 | None:intergenic | 30.0% | |
| GTAAAGATTATTCTCTTCAC+CGG | - | chr5.4:27667413-27667432 | None:intergenic | 30.0% | |
| GTTTGATTATGAACGGAATA+GGG | + | chr5.4:27667495-27667514 | MS.gene99015:CDS | 30.0% | |
| TAAAGATTATTCTCTTCACC+GGG | - | chr5.4:27667412-27667431 | None:intergenic | 30.0% | |
| TATGTTGCCGTTGAATTTAA+CGG | + | chr5.4:27667585-27667604 | MS.gene99015:CDS | 30.0% | |
| TGAATTTAACGGGGAAAAAT+GGG | + | chr5.4:27667596-27667615 | MS.gene99015:CDS | 30.0% | |
| TGTTTGATTATGAACGGAAT+AGG | + | chr5.4:27667494-27667513 | MS.gene99015:CDS | 30.0% | |
| TTGAATTTAACGGGGAAAAA+TGG | + | chr5.4:27667595-27667614 | MS.gene99015:CDS | 30.0% | |
| ! | ACAAAAAGCATATAATACCC+AGG | - | chr5.4:27668450-27668469 | None:intergenic | 30.0% |
| ! | TCTATGCAAGGTCAAAATTT+TGG | + | chr5.4:27668327-27668346 | MS.gene99015:CDS | 30.0% |
| ! | TTTTTCCCCGTTAAATTCAA+CGG | - | chr5.4:27667595-27667614 | None:intergenic | 30.0% |
| !! | AATTTTGGTGAGTTTGGTTT+CGG | + | chr5.4:27668342-27668361 | MS.gene99015:CDS | 30.0% |
| !! | ATCGTATGAGAGTTTGTTTT+CGG | + | chr5.4:27668164-27668183 | MS.gene99015:CDS | 30.0% |
| !!! | GGGAATGTGATTATTTTGAA+CGG | + | chr5.4:27667817-27667836 | MS.gene99015:CDS | 30.0% |
| AAAATAATCACATTCCCCGT+CGG | - | chr5.4:27667814-27667833 | None:intergenic | 35.0% | |
| AAAGCATATAATACCCAGGT+GGG | - | chr5.4:27668446-27668465 | None:intergenic | 35.0% | |
| AGAATCTTTCTTCAAGTCGT+TGG | + | chr5.4:27667242-27667261 | MS.gene99015:CDS | 35.0% | |
| ATAACAGAAGAACCAGTACT+TGG | - | chr5.4:27667568-27667587 | None:intergenic | 35.0% | |
| ATGAACGGAATAGGGTAATA+AGG | + | chr5.4:27667503-27667522 | MS.gene99015:CDS | 35.0% | |
| ATGTTGCCGTTGAATTTAAC+GGG | + | chr5.4:27667586-27667605 | MS.gene99015:CDS | 35.0% | |
| CGTATTATCCGGATTATCTT+CGG | + | chr5.4:27668082-27668101 | MS.gene99015:CDS | 35.0% | |
| GAATTCGGTTTATAAGGCTA+TGG | + | chr5.4:27668392-27668411 | MS.gene99015:CDS | 35.0% | |
| GATTGCGAATTCGGTTTATA+AGG | + | chr5.4:27668386-27668405 | MS.gene99015:CDS | 35.0% | |
| GTCGGTAAAAGTAACATATC+CGG | - | chr5.4:27667796-27667815 | None:intergenic | 35.0% | |
| TAATTTCTCTTCTCTTCACG+AGG | - | chr5.4:27667544-27667563 | None:intergenic | 35.0% | |
| TACAAAACCGGATACAAAAC+CGG | - | chr5.4:27667883-27667902 | None:intergenic | 35.0% | |
| TAGAAGCTTCTAGTAGTTGT+GGG | + | chr5.4:27667704-27667723 | MS.gene99015:CDS | 35.0% | |
| TCATAACAACACGTGTGATT+GGG | + | chr5.4:27667207-27667226 | MS.gene99015:CDS | 35.0% | |
| TCGAATCAGATTCTACCAAA+CGG | + | chr5.4:27667271-27667290 | MS.gene99015:CDS | 35.0% | |
| TGAACGGAATAGGGTAATAA+GGG | + | chr5.4:27667504-27667523 | MS.gene99015:CDS | 35.0% | |
| TTCTCTTCACGAGGTATAAT+AGG | - | chr5.4:27667535-27667554 | None:intergenic | 35.0% | |
| TTTATAAGGCTATGGTTCGT+GGG | + | chr5.4:27668400-27668419 | MS.gene99015:CDS | 35.0% | |
| ! | AAAAGCATATAATACCCAGG+TGG | - | chr5.4:27668447-27668466 | None:intergenic | 35.0% |
| ! | AATTCCTAGTGTTGCTACTT+GGG | + | chr5.4:27668482-27668501 | MS.gene99015:CDS | 35.0% |
| !! | ATTTTGGTGAGTTTGGTTTC+GGG | + | chr5.4:27668343-27668362 | MS.gene99015:CDS | 35.0% |
| !! | GGTCAAAATTTTGGTGAGTT+TGG | + | chr5.4:27668336-27668355 | MS.gene99015:CDS | 35.0% |
| !!! | ATATGTTACTTTTACCGACG+GGG | + | chr5.4:27667797-27667816 | MS.gene99015:CDS | 35.0% |
| !!! | GATATGTTACTTTTACCGAC+GGG | + | chr5.4:27667796-27667815 | MS.gene99015:CDS | 35.0% |
| !!! | GGATATGTTACTTTTACCGA+CGG | + | chr5.4:27667795-27667814 | MS.gene99015:CDS | 35.0% |
| !!! | TGTGATTATTTTGAACGGTG+CGG | + | chr5.4:27667822-27667841 | MS.gene99015:CDS | 35.0% |
| AAATGGGACGGAGTTTATTG+AGG | + | chr5.4:27667612-27667631 | MS.gene99015:CDS | 40.0% | |
| AACGAGTGAGTAGTAAACGA+CGG | - | chr5.4:27668249-27668268 | None:intergenic | 40.0% | |
| AACGGTAGAATCATTGTCGT+TGG | + | chr5.4:27667289-27667308 | MS.gene99015:CDS | 40.0% | |
| AAGATGAAAAGATTCCCCGT+CGG | - | chr5.4:27667454-27667473 | None:intergenic | 40.0% | |
| AAGCATATAATACCCAGGTG+GGG | - | chr5.4:27668445-27668464 | None:intergenic | 40.0% | |
| ACAAAACCGGATACAAAACC+GGG | - | chr5.4:27667882-27667901 | None:intergenic | 40.0% | |
| ACGACAATGATTCTACCGTT+TGG | - | chr5.4:27667289-27667308 | None:intergenic | 40.0% | |
| ATACGCATCCAAACTCAACT+CGG | - | chr5.4:27668067-27668086 | None:intergenic | 40.0% | |
| CTAGAAGCTTCTAGTAGTTG+TGG | + | chr5.4:27667703-27667722 | MS.gene99015:CDS | 40.0% | |
| CTCATAACAACACGTGTGAT+TGG | + | chr5.4:27667206-27667225 | MS.gene99015:CDS | 40.0% | |
| GAAAGTCATAAAGCCGATGT+GGG | - | chr5.4:27668029-27668048 | None:intergenic | 40.0% | |
| GAGGTTGAGATTATGATCTG+CGG | + | chr5.4:27667631-27667650 | MS.gene99015:CDS | 40.0% | |
| GAGGTTGTGAATTCTATGCA+AGG | + | chr5.4:27668315-27668334 | MS.gene99015:CDS | 40.0% | |
| GAGTTTGGATGCGTATTATC+CGG | + | chr5.4:27668071-27668090 | MS.gene99015:CDS | 40.0% | |
| GCTGATGAATGATACATCCT+TGG | - | chr5.4:27667964-27667983 | None:intergenic | 40.0% | |
| GTCGGTAAAAGATGCAAGAA+CGG | - | chr5.4:27667436-27667455 | None:intergenic | 40.0% | |
| GTTTATAAGGCTATGGTTCG+TGG | + | chr5.4:27668399-27668418 | MS.gene99015:CDS | 40.0% | |
| TAATCGGATTCGTGTTTCGT+TGG | + | chr5.4:27668218-27668237 | MS.gene99015:CDS | 40.0% | |
| TCGGTAAAAGATGCAAGAAC+GGG | - | chr5.4:27667435-27667454 | None:intergenic | 40.0% | |
| TGTTGCCGTTGAATTTAACG+GGG | + | chr5.4:27667587-27667606 | MS.gene99015:CDS | 40.0% | |
| TTTAACGGGGAAAAATGGGA+CGG | + | chr5.4:27667600-27667619 | MS.gene99015:CDS | 40.0% | |
| ! | CAATCACACGTGTTGTTATG+AGG | - | chr5.4:27667208-27667227 | None:intergenic | 40.0% |
| ! | GAATTCCTAGTGTTGCTACT+TGG | + | chr5.4:27668481-27668500 | MS.gene99015:CDS | 40.0% |
| ! | GTTCTTGCATCTTTTACCGA+CGG | + | chr5.4:27667435-27667454 | MS.gene99015:CDS | 40.0% |
| ! | TTCTTGCATCTTTTACCGAC+GGG | + | chr5.4:27667436-27667455 | MS.gene99015:CDS | 40.0% |
| !! | ACATCGGCTTTATGACTTTC+GGG | + | chr5.4:27668029-27668048 | MS.gene99015:CDS | 40.0% |
| !! | ATAAACGGGTTATCTGAACC+GGG | - | chr5.4:27667910-27667929 | None:intergenic | 40.0% |
| !! | CACATCGGCTTTATGACTTT+CGG | + | chr5.4:27668028-27668047 | MS.gene99015:CDS | 40.0% |
| !! | CATAAACGGGTTATCTGAAC+CGG | - | chr5.4:27667911-27667930 | None:intergenic | 40.0% |
| !! | GTTTTTAGAAGTTACCGCGT+TGG | + | chr5.4:27668290-27668309 | MS.gene99015:CDS | 40.0% |
| !! | TATCCGGTTTTGTACAAACC+CGG | + | chr5.4:27667889-27667908 | MS.gene99015:CDS | 40.0% |
| !! | TTCGGTGTCGTTTATGTTGA+GGG | + | chr5.4:27668182-27668201 | MS.gene99015:CDS | 40.0% |
| !! | TTTCGGTGTCGTTTATGTTG+AGG | + | chr5.4:27668181-27668200 | MS.gene99015:CDS | 40.0% |
| AAATCCGGCCGAAGATAATC+CGG | - | chr5.4:27668093-27668112 | None:intergenic | 45.0% | |
| AAGCTTCTAGTAGTTGTGGG+AGG | + | chr5.4:27667707-27667726 | MS.gene99015:CDS | 45.0% | |
| ACCGAATTCGCAATCTTTCC+CGG | - | chr5.4:27668381-27668400 | None:intergenic | 45.0% | |
| ACCGGGAAAGATTGCGAATT+CGG | + | chr5.4:27668377-27668396 | MS.gene99015:CDS | 45.0% | |
| ACTAGCATAATCAAACGCGC+CGG | - | chr5.4:27667668-27667687 | None:intergenic | 45.0% | |
| ACTCGTTCGCGATGAATCAA+CGG | + | chr5.4:27668262-27668281 | MS.gene99015:CDS | 45.0% | |
| ATAACCTCCATAACCCACTC+CGG | - | chr5.4:27667754-27667773 | None:intergenic | 45.0% | |
| CCAGATGGCAGGATATTAGT+GGG | + | chr5.4:27667994-27668013 | MS.gene99015:CDS | 45.0% | |
| CGAAAGTCATAAAGCCGATG+TGG | - | chr5.4:27668030-27668049 | None:intergenic | 45.0% | |
| CGGTTTGTAGGGTTAAAGGA+CGG | - | chr5.4:27667084-27667103 | None:intergenic | 45.0% | |
| GAACCGGGTTTGTACAAAAC+CGG | - | chr5.4:27667895-27667914 | None:intergenic | 45.0% | |
| GACGCGTCGTTTAATCTCTT+GGG | - | chr5.4:27667346-27667365 | None:intergenic | 45.0% | |
| GGGAGGTGAAGGAAGTTAAT+CGG | + | chr5.4:27668202-27668221 | MS.gene99015:CDS | 45.0% | |
| GGTAGAATCATTGTCGTTGG+TGG | + | chr5.4:27667292-27667311 | MS.gene99015:CDS | 45.0% | |
| GTTGAGATTATGATCTGCGG+CGG | + | chr5.4:27667634-27667653 | MS.gene99015:CDS | 45.0% | |
| GTTTATGTTGAGGGAGGTGA+AGG | + | chr5.4:27668191-27668210 | MS.gene99015:CDS | 45.0% | |
| TAGTAGTTGTGGGAGGTTGA+AGG | + | chr5.4:27667714-27667733 | MS.gene99015:CDS | 45.0% | |
| TGAACCCAAGTAGCAACACT+AGG | - | chr5.4:27668489-27668508 | None:intergenic | 45.0% | |
| TTATCCGGATTATCTTCGGC+CGG | + | chr5.4:27668086-27668105 | MS.gene99015:CDS | 45.0% | |
| TTGTAGGGTTAAAGGACGGA+GGG | - | chr5.4:27667080-27667099 | None:intergenic | 45.0% | |
| TTTAGAAGTTACCGCGTTGG+AGG | + | chr5.4:27668293-27668312 | MS.gene99015:CDS | 45.0% | |
| TTTGTAGGGTTAAAGGACGG+AGG | - | chr5.4:27667081-27667100 | None:intergenic | 45.0% | |
| ! | ATCTTCGACCGAACCGATTT+CGG | + | chr5.4:27666944-27666963 | MS.gene99015:CDS | 45.0% |
| ! | ATGGCAGGATATTAGTGGGT+GGG | + | chr5.4:27667998-27668017 | MS.gene99015:CDS | 45.0% |
| ! | CACGTGTTGTTATGAGGACA+AGG | - | chr5.4:27667202-27667221 | None:intergenic | 45.0% |
| ! | TCTTGCATCTTTTACCGACG+GGG | + | chr5.4:27667437-27667456 | MS.gene99015:CDS | 45.0% |
| ! | TTTGGATTAGGGTTCCGGTA+GGG | - | chr5.4:27667135-27667154 | None:intergenic | 45.0% |
| ! | TTTGGTTTCGGGAGCTCATT+AGG | + | chr5.4:27668354-27668373 | MS.gene99015:CDS | 45.0% |
| !! | ATGCTTTTTGTTGTCCACGC+TGG | + | chr5.4:27668459-27668478 | MS.gene99015:CDS | 45.0% |
| AACATATCCGGCATGACACG+TGG | - | chr5.4:27667784-27667803 | None:intergenic | 50.0% | |
| AACCTCCACCGCAACAATCA+CGG | - | chr5.4:27668130-27668149 | None:intergenic | 50.0% | |
| ACCGGAACCCTAATCCAAAC+CGG | + | chr5.4:27667136-27667155 | MS.gene99015:CDS | 50.0% | |
| ACTCAACTCGGTCGGATACT+TGG | - | chr5.4:27668055-27668074 | None:intergenic | 50.0% | |
| AGGCGTGAATGTTCGGAGTT+TGG | - | chr5.4:27667182-27667201 | None:intergenic | 50.0% | |
| AGTTTGAGAGCCATGTCGTG+AGG | - | chr5.4:27667013-27667032 | None:intergenic | 50.0% | |
| ATTCACAACCTCCTCCAACG+CGG | - | chr5.4:27668307-27668326 | None:intergenic | 50.0% | |
| CAACACTAGGAATTCCAGCG+TGG | - | chr5.4:27668476-27668495 | None:intergenic | 50.0% | |
| CCATGTCGTGAGGGTTGTAA+CGG | - | chr5.4:27667003-27667022 | None:intergenic | 50.0% | |
| CCCACTAATATCCTGCCATC+TGG | - | chr5.4:27667997-27668016 | None:intergenic | 50.0% | |
| CGACGCGTCGTTTAATCTCT+TGG | - | chr5.4:27667347-27667366 | None:intergenic | 50.0% | |
| CTAGCATAATCAAACGCGCC+GGG | - | chr5.4:27667667-27667686 | None:intergenic | 50.0% | |
| CTCACGCGAGATTCAAATCC+CGG | + | chr5.4:27667391-27667410 | MS.gene99015:CDS | 50.0% | |
| GAAGGTTAGTGACGTGGAAC+CGG | + | chr5.4:27667732-27667751 | MS.gene99015:CDS | 50.0% | |
| GAGGACAAGGCGTGAATGTT+CGG | - | chr5.4:27667189-27667208 | None:intergenic | 50.0% | |
| GAGGTTGAAGGTTAGTGACG+TGG | + | chr5.4:27667726-27667745 | MS.gene99015:CDS | 50.0% | |
| GATGGCAGGATATTAGTGGG+TGG | + | chr5.4:27667997-27668016 | MS.gene99015:CDS | 50.0% | |
| GATGTTGGAGGGACCGAAAT+CGG | - | chr5.4:27666960-27666979 | None:intergenic | 50.0% | |
| GCATCCAAACTCAACTCGGT+CGG | - | chr5.4:27668063-27668082 | None:intergenic | 50.0% | |
| GCCAGATGGCAGGATATTAG+TGG | + | chr5.4:27667993-27668012 | MS.gene99015:CDS | 50.0% | |
| GGATTATCTTCGGCCGGATT+TGG | + | chr5.4:27668092-27668111 | MS.gene99015:CDS | 50.0% | |
| GTCGTAGAGGATGGAATGAG+CGG | - | chr5.4:27667044-27667063 | None:intergenic | 50.0% | |
| GTGGGGCCACATTAAGAGAT+GGG | - | chr5.4:27668428-27668447 | None:intergenic | 50.0% | |
| GTTGTAACGGCAACGGTTGT+TGG | - | chr5.4:27666990-27667009 | None:intergenic | 50.0% | |
| GTTGTTGGAGAGGGAGATGT+TGG | - | chr5.4:27666975-27666994 | None:intergenic | 50.0% | |
| GTTTGAGAGCCATGTCGTGA+GGG | - | chr5.4:27667012-27667031 | None:intergenic | 50.0% | |
| TAACCCTACAAACCGACGCT+TGG | + | chr5.4:27667089-27667108 | MS.gene99015:CDS | 50.0% | |
| TCGGATTCGTGTTTCGTTGG+TGG | + | chr5.4:27668221-27668240 | MS.gene99015:CDS | 50.0% | |
| TGGGGCCACATTAAGAGATG+GGG | - | chr5.4:27668427-27668446 | None:intergenic | 50.0% | |
| TTGGAGAGGGAGATGTTGGA+GGG | - | chr5.4:27666971-27666990 | None:intergenic | 50.0% | |
| TTGGGAAAATGCAGCGAACC+CGG | + | chr5.4:27667861-27667880 | MS.gene99015:CDS | 50.0% | |
| TTTCGGGAGCTCATTAGGAC+CGG | + | chr5.4:27668359-27668378 | MS.gene99015:CDS | 50.0% | |
| ! | ATTTTGAACGGTGCGGCGAA+TGG | + | chr5.4:27667829-27667848 | MS.gene99015:CDS | 50.0% |
| ! | GTATCCGACCGAGTTGAGTT+TGG | + | chr5.4:27668056-27668075 | MS.gene99015:CDS | 50.0% |
| ! | GTGGGTTATGGAGGTTATGC+CGG | + | chr5.4:27667756-27667775 | MS.gene99015:CDS | 50.0% |
| ! | GTTTGGATTAGGGTTCCGGT+AGG | - | chr5.4:27667136-27667155 | None:intergenic | 50.0% |
| ! | TACATCCTTGGTGTACTCGC+TGG | - | chr5.4:27667952-27667971 | None:intergenic | 50.0% |
| ! | TCAGCTGTGTTGTTGCCAGA+TGG | + | chr5.4:27667979-27667998 | MS.gene99015:CDS | 50.0% |
| ! | TTGGATTAGGGTTCCGGTAG+GGG | - | chr5.4:27667134-27667153 | None:intergenic | 50.0% |
| !! | AACACCAAGCGTCGGTTTGT+AGG | - | chr5.4:27667096-27667115 | None:intergenic | 50.0% |
| !! | ACACCAAGCGTCGGTTTGTA+GGG | - | chr5.4:27667095-27667114 | None:intergenic | 50.0% |
| !! | ACCGGTTTGGATTAGGGTTC+CGG | - | chr5.4:27667140-27667159 | None:intergenic | 50.0% |
| !! | AGCGAACCCGGTTTTGTATC+CGG | + | chr5.4:27667873-27667892 | MS.gene99015:CDS | 50.0% |
| !! | GAAGCCACCGGTTTGGATTA+GGG | - | chr5.4:27667146-27667165 | None:intergenic | 50.0% |
| !! | GCGTCGGTTTGTAGGGTTAA+AGG | - | chr5.4:27667088-27667107 | None:intergenic | 50.0% |
| !! | GGTGTCGTTTATGTTGAGGG+AGG | + | chr5.4:27668185-27668204 | MS.gene99015:CDS | 50.0% |
| !! | TGAAGCCACCGGTTTGGATT+AGG | - | chr5.4:27667147-27667166 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGATGTCGTAG+AGG | - | chr5.4:27667057-27667076 | None:intergenic | 50.0% |
| AACGGCAACGGTTGTTGGAG+AGG | - | chr5.4:27666985-27667004 | None:intergenic | 55.0% | |
| ACCTCCACCGCAACAATCAC+GGG | - | chr5.4:27668129-27668148 | None:intergenic | 55.0% | |
| ACGGCAACGGTTGTTGGAGA+GGG | - | chr5.4:27666984-27667003 | None:intergenic | 55.0% | |
| AGAAGTTACCGCGTTGGAGG+AGG | + | chr5.4:27668296-27668315 | MS.gene99015:CDS | 55.0% | |
| ATTGCGGCCCGTGATTGTTG+CGG | + | chr5.4:27668119-27668138 | MS.gene99015:CDS | 55.0% | |
| CAAACCGGTGGCTTCAACGA+CGG | + | chr5.4:27667151-27667170 | MS.gene99015:CDS | 55.0% | |
| CCGTTACAACCCTCACGACA+TGG | + | chr5.4:27667000-27667019 | MS.gene99015:CDS | 55.0% | |
| CGTGAGGGTTGTAACGGCAA+CGG | - | chr5.4:27666997-27667016 | None:intergenic | 55.0% | |
| CTCTTAATGTGGCCCCACCT+GGG | + | chr5.4:27668430-27668449 | MS.gene99015:CDS | 55.0% | |
| GGAACCCTAATCCAAACCGG+TGG | + | chr5.4:27667139-27667158 | MS.gene99015:CDS | 55.0% | |
| GGCCGCAATGTGTCCAAATC+CGG | - | chr5.4:27668108-27668127 | None:intergenic | 55.0% | |
| GGCCGGATTTGGACACATTG+CGG | + | chr5.4:27668103-27668122 | MS.gene99015:CDS | 55.0% | |
| GGGGCCACATTAAGAGATGG+GGG | - | chr5.4:27668426-27668445 | None:intergenic | 55.0% | |
| GGTGGGGCCACATTAAGAGA+TGG | - | chr5.4:27668429-27668448 | None:intergenic | 55.0% | |
| GTAACCGTCGTTGAAGCCAC+CGG | - | chr5.4:27667158-27667177 | None:intergenic | 55.0% | |
| GTTGGAGAGGGAGATGTTGG+AGG | - | chr5.4:27666972-27666991 | None:intergenic | 55.0% | |
| TAGCACCAGCGAGTACACCA+AGG | + | chr5.4:27667944-27667963 | MS.gene99015:CDS | 55.0% | |
| TAGTGACGTGGAACCGGAGT+GGG | + | chr5.4:27667738-27667757 | MS.gene99015:CDS | 55.0% | |
| TCTCTTAATGTGGCCCCACC+TGG | + | chr5.4:27668429-27668448 | MS.gene99015:CDS | 55.0% | |
| TGGAGGGACCGAAATCGGTT+CGG | - | chr5.4:27666955-27666974 | None:intergenic | 55.0% | |
| TGGGCCCCCATCTCTTAATG+TGG | + | chr5.4:27668419-27668438 | MS.gene99015:CDS | 55.0% | |
| TGGGTGGGAGTAACCCACAT+CGG | + | chr5.4:27668013-27668032 | MS.gene99015:CDS | 55.0% | |
| TTAGTGACGTGGAACCGGAG+TGG | + | chr5.4:27667737-27667756 | MS.gene99015:CDS | 55.0% | |
| TTCGGGAGCTCATTAGGACC+GGG | + | chr5.4:27668360-27668379 | MS.gene99015:CDS | 55.0% | |
| ! | CTGTGTTGTTGCCAGATGGC+AGG | + | chr5.4:27667983-27668002 | MS.gene99015:CDS | 55.0% |
| ! | GGTGGTGATGTCGTAGAGGA+TGG | - | chr5.4:27667053-27667072 | None:intergenic | 55.0% |
| ! | GGTTAAAGGACGGAGGGTGT+TGG | - | chr5.4:27667074-27667093 | None:intergenic | 55.0% |
| !! | TAAAGGACGGAGGGTGTTGG+TGG | - | chr5.4:27667071-27667090 | None:intergenic | 55.0% |
| ACCGGAGGAACACCAAGCGT+CGG | - | chr5.4:27667104-27667123 | None:intergenic | 60.0% | |
| GAACGGTGCGGCGAATGGTA+CGG | + | chr5.4:27667834-27667853 | MS.gene99015:CDS | 60.0% | |
| ! | CGTCGTTGAAGCCACCGGTT+TGG | - | chr5.4:27667153-27667172 | None:intergenic | 60.0% |
| !! | ACCGACGCTTGGTGTTCCTC+CGG | + | chr5.4:27667100-27667119 | MS.gene99015:CDS | 60.0% |
| !! | CGTGGAACCGGAGTGGGTTA+TGG | + | chr5.4:27667744-27667763 | MS.gene99015:CDS | 60.0% |
| !! | GGAACCGGAGTGGGTTATGG+AGG | + | chr5.4:27667747-27667766 | MS.gene99015:CDS | 60.0% |
| GCCCGTGATTGTTGCGGTGG+AGG | + | chr5.4:27668125-27668144 | MS.gene99015:CDS | 65.0% | |
| TCCGGCATGACACGTGGCAC+CGG | - | chr5.4:27667778-27667797 | None:intergenic | 65.0% | |
| TCCGGTAGGGGAGACAGCAC+CGG | - | chr5.4:27667122-27667141 | None:intergenic | 65.0% | |
| ! | GGCGAATGGTACGGCGGGTT+GGG | + | chr5.4:27667843-27667862 | MS.gene99015:CDS | 65.0% |
| !! | TCCGGTGCTGTCTCCCCTAC+CGG | + | chr5.4:27667118-27667137 | MS.gene99015:CDS | 65.0% |
| ATCTGCGGCGGCGCGTTTCC+CGG | + | chr5.4:27667646-27667665 | MS.gene99015:CDS | 70.0% | |
| CGGCGAATGGTACGGCGGGT+TGG | + | chr5.4:27667842-27667861 | MS.gene99015:CDS | 70.0% | |
| CGGTGCGGCGAATGGTACGG+CGG | + | chr5.4:27667837-27667856 | MS.gene99015:CDS | 70.0% | |
| GCGGCCCGTGATTGTTGCGG+TGG | + | chr5.4:27668122-27668141 | MS.gene99015:CDS | 70.0% | |
| GGTGCGGCGAATGGTACGGC+GGG | + | chr5.4:27667838-27667857 | MS.gene99015:CDS | 70.0% | |
| ! | GGTAGGGGAGACAGCACCGG+AGG | - | chr5.4:27667119-27667138 | None:intergenic | 70.0% |
| !! | GCCGGTGCCACGTGTCATGC+CGG | + | chr5.4:27667774-27667793 | MS.gene99015:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 27666908 | 27668518 | 27666908 | ID=MS.gene99015 |
| chr5.4 | mRNA | 27666908 | 27668518 | 27666908 | ID=MS.gene99015.t1;Parent=MS.gene99015 |
| chr5.4 | exon | 27666908 | 27668518 | 27666908 | ID=MS.gene99015.t1.exon1;Parent=MS.gene99015.t1 |
| chr5.4 | CDS | 27666908 | 27668518 | 27666908 | ID=cds.MS.gene99015.t1;Parent=MS.gene99015.t1 |
| Gene Sequence |
| Protein sequence |
