AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99264


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99264.t1 MTR_5g044930 93.284 670 36 4 1 667 1 664 0.0 1240
MS.gene99264.t1 MTR_5g045620 93.263 668 36 3 1 667 1 660 0.0 1237
MS.gene99264.t1 MTR_4g081540 34.524 336 208 6 338 665 454 785 1.21e-60 217
MS.gene99264.t1 MTR_1g066900 25.574 653 403 17 85 665 60 701 3.84e-44 169
MS.gene99264.t1 MTR_4g099200 21.966 651 411 17 80 666 69 686 2.36e-34 139
MS.gene99264.t1 MTR_5g459290 92.982 57 4 0 175 231 26 82 4.99e-31 116
MS.gene99264.t1 MTR_3g037490 21.922 593 366 16 1 571 24 541 2.90e-18 89.4
MS.gene99264.t1 MTR_3g037490 22.564 390 250 8 229 618 129 466 3.20e-11 67.0
MS.gene99264.t1 MTR_1g048080 24.928 345 221 8 249 562 469 806 2.24e-16 84.0
MS.gene99264.t1 MTR_1g068960 23.417 521 316 14 97 592 59 521 5.27e-16 82.4
MS.gene99264.t1 MTR_1g068960 25.000 344 239 11 239 578 253 581 2.49e-12 70.5
MS.gene99264.t1 MTR_2g049740 23.379 586 356 18 16 559 18 552 1.48e-15 81.3
MS.gene99264.t1 MTR_4g068360 23.837 344 242 10 220 559 250 577 5.46e-15 79.0
MS.gene99264.t1 MTR_4g068360 22.928 567 392 16 57 616 29 557 7.21e-14 75.5
MS.gene99264.t1 MTR_1g050495 23.092 524 328 16 112 590 24 517 1.93e-14 77.0
MS.gene99264.t1 MTR_6g079590 22.715 383 262 12 218 590 233 591 2.82e-14 76.6
MS.gene99264.t1 MTR_6g022260 22.539 386 261 10 207 578 147 508 3.08e-14 76.3
MS.gene99264.t1 MTR_3g054110 21.366 454 301 9 232 644 116 554 3.69e-14 76.3
MS.gene99264.t1 MTR_6g078160 24.028 283 199 5 297 576 234 503 4.49e-14 75.9
MS.gene99264.t1 MTR_6g079920 20.779 462 318 9 211 639 107 553 5.07e-14 75.9
MS.gene99264.t1 MTR_3g034990 22.311 502 323 18 107 567 30 505 1.52e-13 74.3
MS.gene99264.t1 MTR_7g103600 25.045 551 359 19 43 575 9 523 1.55e-13 74.7
MS.gene99264.t1 MTR_7g091410 21.359 412 289 8 220 622 288 673 5.19e-13 72.8
MS.gene99264.t1 MTR_6g079830 20.563 462 319 9 211 639 107 553 6.09e-13 72.4
MS.gene99264.t1 MTR_4g133740 24.688 320 223 7 242 557 200 505 7.05e-13 72.4
MS.gene99264.t1 MTR_5g095130 23.113 212 158 4 379 589 593 800 9.90e-13 72.0
MS.gene99264.t1 MTR_7g091410 21.359 412 289 8 220 622 149 534 1.06e-12 71.6
MS.gene99264.t1 MTR_5g045490 26.749 243 168 4 373 614 320 553 1.22e-12 71.6
MS.gene99264.t1 MTR_2g037740 24.016 254 187 4 337 590 130 377 1.38e-12 71.6
MS.gene99264.t1 MTR_7g091410 22.542 417 278 12 220 622 84 469 1.71e-12 70.9
MS.gene99264.t1 MTR_7g011500 24.424 217 150 3 420 633 202 407 1.83e-12 71.2
MS.gene99264.t1 MTR_7g011500 20.727 275 202 4 333 607 223 481 2.04e-11 67.8
MS.gene99264.t1 MTR_7g091410 22.542 417 278 12 220 622 43 428 2.20e-12 70.5
MS.gene99264.t1 MTR_2g035630 22.509 271 199 4 297 567 236 495 2.24e-12 70.5
MS.gene99264.t1 MTR_4g091600 26.606 218 116 5 402 578 213 427 2.46e-12 70.9
MS.gene99264.t1 MTR_4g091600 22.845 464 305 15 87 540 236 656 5.70e-12 69.7
MS.gene99264.t1 MTR_6g078190 22.590 332 240 7 253 576 92 414 3.07e-12 70.1
MS.gene99264.t1 MTR_1g045880 24.333 300 205 8 271 564 229 512 3.13e-12 70.1
MS.gene99264.t1 MTR_7g076550 25.234 214 150 4 370 578 172 380 3.22e-12 70.1
MS.gene99264.t1 MTR_0014s0250 21.513 423 243 11 218 567 89 495 3.65e-12 69.7
MS.gene99264.t1 MTR_1g108270 21.846 325 243 5 239 562 172 486 3.82e-12 69.7
MS.gene99264.t1 MTR_5g090210 23.174 397 243 10 186 578 384 722 4.93e-12 69.7
MS.gene99264.t1 MTR_4g108060 22.543 346 245 8 222 560 165 494 6.01e-12 69.3
MS.gene99264.t1 MTR_5g077930 23.179 302 215 8 279 577 212 499 6.77e-12 69.3
MS.gene99264.t1 MTR_6g079380 22.457 521 325 16 67 561 22 489 7.17e-12 68.9
MS.gene99264.t1 MTR_3g061000 24.268 239 169 5 337 572 281 510 8.43e-12 68.6
MS.gene99264.t1 MTR_3g061000 22.951 244 170 4 391 629 157 387 1.68e-11 67.4
MS.gene99264.t1 MTR_1g031720 22.928 362 257 8 219 575 309 653 9.54e-12 68.9
MS.gene99264.t1 MTR_6g079250 22.261 283 204 6 297 576 80 349 9.92e-12 67.8
MS.gene99264.t1 MTR_6g079250 21.176 340 219 7 218 556 73 364 3.54e-11 65.9
MS.gene99264.t1 MTR_3g053350 23.986 296 212 6 326 619 196 480 1.04e-11 68.6
MS.gene99264.t1 MTR_7g017570 23.466 277 168 6 411 645 251 525 1.05e-11 68.9
MS.gene99264.t1 MTR_8g105170 25.728 206 151 2 374 578 242 446 1.10e-11 68.9
MS.gene99264.t1 MTR_6g065540 25.175 286 192 9 297 576 248 517 1.20e-11 68.2
MS.gene99264.t1 MTR_7g073260 24.340 341 217 12 293 610 145 467 2.11e-11 67.4
MS.gene99264.t1 MTR_4g108060 22.543 346 245 8 222 560 31 360 2.35e-11 67.0
MS.gene99264.t1 MTR_4g074390 22.319 345 245 8 223 560 166 494 2.60e-11 67.0
MS.gene99264.t1 MTR_8g103480 21.958 337 233 4 239 564 129 446 3.78e-11 66.6
MS.gene99264.t1 MTR_2g026645 22.500 320 230 7 242 557 166 471 4.28e-11 66.6
MS.gene99264.t1 MTR_2g103520 24.335 263 167 7 379 629 211 453 5.01e-11 66.6
MS.gene99264.t1 MTR_6g078210 25.581 172 127 1 390 561 334 504 6.51e-11 65.9
MS.gene99264.t1 MTR_8g054410 22.776 281 207 3 297 577 215 485 8.27e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99264.t1 AT1G69290 62.058 651 221 8 25 666 24 657 0.0 810
MS.gene99264.t1 AT1G68980 58.374 615 236 5 56 663 14 615 0.0 723
MS.gene99264.t1 AT1G03100 35.988 339 204 7 336 666 460 793 2.29e-65 230
MS.gene99264.t1 AT3G09650 29.213 356 232 4 329 665 408 762 4.67e-43 166
MS.gene99264.t1 AT4G17616 24.809 262 163 5 379 640 416 643 1.13e-21 100
MS.gene99264.t1 AT1G62720 25.876 371 242 11 220 583 137 481 4.56e-17 85.1
MS.gene99264.t1 AT5G04810 23.499 383 234 8 249 625 545 874 6.68e-17 85.5
MS.gene99264.t1 AT3G54980 24.697 413 262 9 220 597 266 664 1.02e-16 84.7
MS.gene99264.t1 AT3G54980 22.727 374 262 12 212 577 433 787 7.33e-11 66.2
MS.gene99264.t1 AT3G54980 24.697 413 262 9 220 597 266 664 1.02e-16 84.7
MS.gene99264.t1 AT3G54980 22.727 374 262 12 212 577 433 787 7.33e-11 66.2
MS.gene99264.t1 AT5G64320 22.797 522 316 19 139 615 215 694 1.27e-16 84.3
MS.gene99264.t1 AT5G64320 22.437 517 356 15 67 574 214 694 4.41e-11 66.6
MS.gene99264.t1 AT1G64583 25.648 347 216 9 245 558 128 465 5.52e-15 78.6
MS.gene99264.t1 AT1G64583 25.648 347 216 9 245 558 103 440 8.92e-15 77.8
MS.gene99264.t1 AT5G39710 23.077 364 258 11 220 578 203 549 1.02e-14 78.2
MS.gene99264.t1 AT3G53700 23.210 405 275 12 220 615 187 564 1.05e-14 78.2
MS.gene99264.t1 AT1G64100 25.114 219 156 2 414 632 438 648 4.71e-14 76.3
MS.gene99264.t1 AT1G64100 21.446 401 272 11 247 629 165 540 2.53e-11 67.4
MS.gene99264.t1 AT1G64100 25.366 205 145 2 414 618 438 634 5.96e-14 75.9
MS.gene99264.t1 AT1G64100 21.446 401 272 11 247 629 165 540 2.13e-11 67.8
MS.gene99264.t1 AT1G64100 25.366 205 145 2 414 618 438 634 5.96e-14 75.9
MS.gene99264.t1 AT1G64100 21.446 401 272 11 247 629 165 540 2.13e-11 67.8
MS.gene99264.t1 AT4G11690 22.865 363 222 7 257 578 162 507 8.48e-14 75.1
MS.gene99264.t1 AT1G19520 22.050 322 233 8 239 556 400 707 1.14e-13 75.1
MS.gene99264.t1 AT1G62670 22.757 457 281 13 127 576 172 563 1.80e-13 74.3
MS.gene99264.t1 AT1G62670 22.757 457 281 13 127 576 172 563 1.80e-13 74.3
MS.gene99264.t1 AT1G12620 27.586 203 140 3 390 590 369 566 2.88e-13 73.6
MS.gene99264.t1 AT1G12620 23.662 355 253 9 232 582 116 456 9.79e-13 71.6
MS.gene99264.t1 AT3G07290 23.203 487 337 15 88 567 248 704 3.12e-13 73.6
MS.gene99264.t1 AT5G28460 21.206 514 355 15 86 580 201 683 3.43e-13 73.6
MS.gene99264.t1 AT5G38730 26.222 225 157 4 379 603 209 424 3.69e-13 73.2
MS.gene99264.t1 AT5G28370 21.206 514 355 15 86 580 201 683 4.12e-13 73.2
MS.gene99264.t1 AT1G05670 20.984 386 274 8 220 578 279 660 5.99e-13 72.8
MS.gene99264.t1 AT1G05670 20.984 386 274 8 220 578 279 660 5.99e-13 72.8
MS.gene99264.t1 AT1G05670 20.984 386 274 8 220 578 279 660 5.99e-13 72.8
MS.gene99264.t1 AT3G61520 21.012 514 356 15 86 580 201 683 9.09e-13 72.0
MS.gene99264.t1 AT5G61990 22.430 428 251 10 241 598 470 886 9.25e-13 72.4
MS.gene99264.t1 AT4G19440 23.784 370 242 7 239 576 359 720 1.25e-12 71.6
MS.gene99264.t1 AT4G19440 23.784 370 242 7 239 576 359 720 1.25e-12 71.6
MS.gene99264.t1 AT4G19440 23.784 370 242 7 239 576 359 720 1.25e-12 71.6
MS.gene99264.t1 AT4G19440 23.784 370 242 7 239 576 359 720 1.25e-12 71.6
MS.gene99264.t1 AT5G50280 24.231 260 188 3 362 620 333 584 1.38e-12 71.6
MS.gene99264.t1 AT1G63080 25.000 204 146 2 378 578 210 409 1.52e-12 71.2
MS.gene99264.t1 AT1G63080 25.000 204 146 2 378 578 210 409 1.52e-12 71.2
MS.gene99264.t1 AT1G63080 25.000 204 146 2 378 578 210 409 1.52e-12 71.2
MS.gene99264.t1 AT1G22960 25.062 403 263 15 198 583 310 690 1.75e-12 71.2
MS.gene99264.t1 AT1G22960 25.062 403 263 15 198 583 310 690 1.75e-12 71.2
MS.gene99264.t1 AT5G61400 23.318 223 164 2 359 578 185 403 1.82e-12 70.9
MS.gene99264.t1 AT2G41720 21.237 372 267 6 255 622 317 666 2.32e-12 70.9
MS.gene99264.t1 AT1G62680 25.128 195 136 3 382 570 132 322 2.42e-12 70.5
MS.gene99264.t1 AT1G62680 25.128 195 136 3 382 570 132 322 2.42e-12 70.5
MS.gene99264.t1 AT5G27270 23.834 386 239 12 239 594 651 1011 2.61e-12 70.9
MS.gene99264.t1 AT4G16390 24.281 313 219 8 249 557 201 499 2.62e-12 70.5
MS.gene99264.t1 AT2G41720 21.237 372 267 6 255 622 317 666 3.22e-12 70.5
MS.gene99264.t1 AT1G79080 27.273 165 119 1 389 552 227 391 3.83e-12 69.7
MS.gene99264.t1 AT2G41720 21.237 372 267 6 255 622 185 534 4.02e-12 70.1
MS.gene99264.t1 AT1G12300 22.938 388 273 10 246 629 146 511 4.28e-12 69.7
MS.gene99264.t1 AT1G12300 26.633 199 139 3 390 586 385 578 1.01e-11 68.6
MS.gene99264.t1 AT1G63330 26.087 230 161 4 359 584 272 496 5.74e-12 69.3
MS.gene99264.t1 AT1G63330 26.087 230 161 4 359 584 272 496 5.74e-12 69.3
MS.gene99264.t1 AT1G63330 26.087 230 161 4 359 584 272 496 5.74e-12 69.3
MS.gene99264.t1 AT1G63230 25.000 200 149 1 379 578 47 245 5.97e-12 67.8
MS.gene99264.t1 AT3G06920 21.801 211 162 2 379 589 558 765 5.98e-12 69.7
MS.gene99264.t1 AT3G06920 21.801 211 162 2 379 589 572 779 6.02e-12 69.7
MS.gene99264.t1 AT3G06920 21.801 211 162 2 379 589 572 779 6.02e-12 69.7
MS.gene99264.t1 AT1G12700 21.351 459 273 13 245 633 145 585 6.75e-12 68.9
MS.gene99264.t1 AT1G12700 21.351 459 273 13 245 633 161 601 7.08e-12 68.9
MS.gene99264.t1 AT1G12700 21.351 459 273 13 245 633 161 601 7.08e-12 68.9
MS.gene99264.t1 AT1G52620 22.553 470 273 15 219 649 167 584 8.11e-12 68.9
MS.gene99264.t1 AT5G27270 23.514 387 239 12 239 594 446 806 9.47e-12 68.9
MS.gene99264.t1 AT5G27270 23.514 387 239 12 239 594 446 806 9.47e-12 68.9
MS.gene99264.t1 AT1G62930 22.149 456 285 13 127 576 171 562 9.81e-12 68.6
MS.gene99264.t1 AT2G16880 23.416 363 237 10 211 558 264 600 9.88e-12 68.9
MS.gene99264.t1 AT1G63130 26.437 174 123 2 411 584 399 567 9.90e-12 68.6
MS.gene99264.t1 AT1G63130 26.437 174 123 2 411 584 399 567 9.90e-12 68.6
MS.gene99264.t1 AT2G39230 21.972 355 264 7 225 578 452 794 1.03e-11 68.9
MS.gene99264.t1 AT3G16710 31.148 183 120 4 379 558 123 302 1.19e-11 68.2
MS.gene99264.t1 AT3G16710 31.148 183 120 4 379 558 123 302 1.27e-11 67.8
MS.gene99264.t1 AT1G12775 22.535 355 257 8 232 582 132 472 1.30e-11 68.2
MS.gene99264.t1 AT1G12775 22.604 407 259 12 220 590 156 542 5.38e-11 66.2
MS.gene99264.t1 AT5G41170 27.219 169 122 1 392 560 126 293 2.07e-11 67.4
MS.gene99264.t1 AT1G62910 22.737 453 274 14 139 584 186 569 2.30e-11 67.4
MS.gene99264.t1 AT1G62910 21.944 360 265 8 220 577 151 496 2.68e-11 67.4
MS.gene99264.t1 AT5G41170 27.219 169 122 1 392 560 26 193 2.47e-11 66.6
MS.gene99264.t1 AT5G41170 27.219 169 122 1 392 560 126 293 2.56e-11 67.0
MS.gene99264.t1 AT1G62590 26.437 174 123 2 411 584 403 571 2.98e-11 67.0
MS.gene99264.t1 AT1G62590 26.437 174 123 2 411 584 403 571 2.98e-11 67.0
MS.gene99264.t1 AT5G65560 23.744 219 123 5 411 629 326 500 2.99e-11 67.4
MS.gene99264.t1 AT5G65560 23.744 219 123 5 411 629 326 500 2.99e-11 67.4
MS.gene99264.t1 AT5G65560 23.744 219 123 5 411 629 326 500 2.99e-11 67.4
MS.gene99264.t1 AT2G15630 20.699 372 276 9 220 590 188 541 4.04e-11 66.6
MS.gene99264.t1 AT2G17140 22.392 393 256 16 218 578 248 623 4.28e-11 67.0
MS.gene99264.t1 AT2G17140 22.392 393 256 16 218 578 248 623 4.28e-11 67.0
MS.gene99264.t1 AT1G63150 23.276 232 163 3 379 609 229 446 5.57e-11 66.2
MS.gene99264.t1 AT1G63150 23.276 232 163 3 379 609 229 446 5.57e-11 66.2
MS.gene99264.t1 AT2G31400 22.647 340 243 8 223 559 272 594 6.19e-11 66.2
MS.gene99264.t1 AT4G11690 22.222 234 148 3 379 578 247 480 6.26e-11 65.9
MS.gene99264.t1 AT2G31400 22.714 339 244 7 223 559 272 594 7.18e-11 66.2
MS.gene99264.t1 AT5G14770 23.529 476 281 22 220 647 49 489 7.57e-11 66.2
MS.gene99264.t1 AT5G14770 23.529 476 281 22 220 647 49 489 7.57e-11 66.2
MS.gene99264.t1 AT5G14770 23.529 476 281 22 220 647 49 489 7.57e-11 66.2
MS.gene99264.t1 AT5G14770 23.529 476 281 22 220 647 49 489 7.57e-11 66.2
MS.gene99264.t1 AT5G14770 23.529 476 281 22 220 647 49 489 7.57e-11 66.2
MS.gene99264.t1 AT5G12100 22.747 466 310 13 139 575 282 726 9.22e-11 65.9

Find 142 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTATTTATATGCACTTAA+AGG 0.150295 5.4:+34609534 MS.gene99264:CDS
GAGAAGTGATAAGGGATTTA+TGG 0.159682 5.4:-34608972 None:intergenic
CTGAAGTTGGCAGATGATTT+TGG 0.170808 5.4:-34608894 None:intergenic
TCTTTGTAAGGGAAATATTA+AGG 0.203880 5.4:+34609776 MS.gene99264:CDS
TTGGGAGGCTCTGTGGGTCT+TGG 0.217011 5.4:+34609945 MS.gene99264:CDS
TGTCGGGAAGAGAGGATAAA+TGG 0.232000 5.4:-34609080 None:intergenic
TGGGAGGCTCTGTGGGTCTT+GGG 0.253162 5.4:+34609946 MS.gene99264:CDS
AGGGAATTAGTGAGGGGTTT+GGG 0.279615 5.4:-34609051 None:intergenic
GTTGATGAGTCTATAGGTTT+TGG 0.302382 5.4:+34609852 MS.gene99264:CDS
AAGCCTGATGTGTTTAGTTT+TGG 0.305298 5.4:+34609504 MS.gene99264:CDS
TAGTAAGTTGTTGAGGTGTA+AGG 0.319051 5.4:-34608933 None:intergenic
CCGAAACATATCCGTTAATC+AGG 0.334305 5.4:-34610403 None:intergenic
GAGATGATCACGAGGAAGTT+TGG 0.343457 5.4:+34609712 MS.gene99264:CDS
GGTCATTCGGCTCAAATTGC+AGG 0.350988 5.4:-34610367 None:intergenic
AAGGGAATTAGTGAGGGGTT+TGG 0.361527 5.4:-34609052 None:intergenic
TGAAAATATTTGTTGATAAG+TGG 0.364460 5.4:+34610600 MS.gene99264:CDS
GAGAATGATCTTGTTCTATA+TGG 0.365489 5.4:-34608775 None:intergenic
GGAATGCATCAACCAGATTC+TGG 0.365582 5.4:-34610511 None:intergenic
CTTTGTAAGGGAAATATTAA+GGG 0.366157 5.4:+34609777 MS.gene99264:CDS
AGCTCAAAGTCGCCAGGTTA+AGG 0.368501 5.4:+34610657 MS.gene99264:CDS
CTTATTTATATGCACTTAAA+GGG 0.372712 5.4:+34609535 MS.gene99264:CDS
GATCAAATTTGACCAGAATC+TGG 0.372731 5.4:+34610499 MS.gene99264:CDS
AACATCCATGATGATGATAA+TGG 0.375196 5.4:+34608865 MS.gene99264:CDS
GACTATAATGACAGGTTTGA+TGG 0.384239 5.4:+34610187 MS.gene99264:CDS
CATCAGTTTGAGAAGTGATA+AGG 0.386250 5.4:-34608981 None:intergenic
TTTGATTACTGGCTATGTTA+AGG 0.389744 5.4:+34609638 MS.gene99264:CDS
GTATTGAATTCAAGGAGGTT+GGG 0.392060 5.4:-34609156 None:intergenic
GACAAGTATGTCTGGTCATT+CGG 0.398593 5.4:-34610380 None:intergenic
CCTGATTAACGGATATGTTT+CGG 0.401301 5.4:+34610403 MS.gene99264:CDS
GTTTGGGTGGGAAGGAATGA+TGG 0.406216 5.4:-34609035 None:intergenic
AGAGAACTGCAGGGTTGCTT+TGG 0.408506 5.4:+34609353 MS.gene99264:CDS
ATCAGTTTGAGAAGTGATAA+GGG 0.409925 5.4:-34608980 None:intergenic
AGTTAAGGAATATCTTTGTA+AGG 0.413231 5.4:+34609764 MS.gene99264:CDS
CTCTGTTTAGGGACATGAGA+GGG 0.414645 5.4:+34610132 MS.gene99264:CDS
GCAAGTTGTGGAGAAATCTA+AGG 0.414876 5.4:+34610574 MS.gene99264:CDS
TGTATTGAATTCAAGGAGGT+TGG 0.416292 5.4:-34609157 None:intergenic
GAGATACAAGCAAGCGTTCA+TGG 0.416295 5.4:+34610622 MS.gene99264:CDS
TGTTTCTATCAAAGCATCAT+AGG 0.418085 5.4:-34610075 None:intergenic
ATTGAGAATGTCGGGAAGAG+AGG 0.418936 5.4:-34609088 None:intergenic
GTGACGGAGATTAGTAGTTC+AGG 0.428125 5.4:+34610032 MS.gene99264:CDS
ACATACTTGTCCCTGATTAA+CGG 0.428702 5.4:+34610392 MS.gene99264:CDS
TGGTCAAATTTGATCCCCTT+CGG 0.433100 5.4:-34610491 None:intergenic
GTCGGGAAGAGAGGATAAAT+GGG 0.433885 5.4:-34609079 None:intergenic
ATCAAAGTTGATGAGTCTAT+AGG 0.435660 5.4:+34609846 MS.gene99264:CDS
TATGGATTGTATTGAATTCA+AGG 0.437146 5.4:-34609164 None:intergenic
AGTGGAAATTTGAATAAAGA+AGG 0.437453 5.4:-34608832 None:intergenic
AACTGCGGAGGCTACTCTAT+TGG 0.438932 5.4:+34610010 MS.gene99264:CDS
TTAGGGACATGAGAGGGGCT+AGG 0.439845 5.4:+34610138 MS.gene99264:CDS
GGCTGGTGATTTAGTTTCTG+TGG 0.441704 5.4:+34609659 MS.gene99264:CDS
GGGAGGCTCTGTGGGTCTTG+GGG 0.442259 5.4:+34609947 MS.gene99264:CDS
GTTAATGCATGTGTTAGTAT+TGG 0.447705 5.4:+34609879 MS.gene99264:CDS
AGAGGATAAATGGGTGAGAA+GGG 0.452351 5.4:-34609070 None:intergenic
TCTTGCATCTTCTAGCCTCC+CGG 0.455695 5.4:-34610321 None:intergenic
ACACCGCCCCACAAATGAAA+AGG 0.455909 5.4:-34609273 None:intergenic
GAATTAGTGAGGGGTTTGGG+TGG 0.457507 5.4:-34609048 None:intergenic
ATTCAAACTACTAAGAATAG+TGG 0.457881 5.4:-34609685 None:intergenic
AGAGTAAAGAGATGGAGTTT+CGG 0.462642 5.4:-34608800 None:intergenic
TTGAAGTGGGTACTCATGAT+TGG 0.463951 5.4:+34610270 MS.gene99264:CDS
AGTAAGTTGTTGAGGTGTAA+GGG 0.464153 5.4:-34608932 None:intergenic
GAACCATCGACCTGAGTTGA+TGG 0.464968 5.4:+34610211 MS.gene99264:CDS
GAGGTTAAGCGAAAGTTAGC+AGG 0.465516 5.4:+34610461 MS.gene99264:CDS
TTTCTTAGATGAGGTGGTTG+AGG 0.470772 5.4:+34610238 MS.gene99264:CDS
AATGTGTTGGGAGGCTCTGT+GGG 0.473277 5.4:+34609939 MS.gene99264:CDS
CTGAAAGTCTTGACCGGACA+TGG 0.473408 5.4:-34610099 None:intergenic
ACTGATGCTGACAGAGTTGT+TGG 0.473786 5.4:+34609459 MS.gene99264:CDS
TAGGGACATGAGAGGGGCTA+GGG 0.473959 5.4:+34610139 MS.gene99264:CDS
CTTCTCAAACTGATGAAGCT+TGG 0.474009 5.4:+34608989 MS.gene99264:CDS
ATCAGGCTTAACACCGAGCT+TGG 0.475678 5.4:-34609490 None:intergenic
AGTGAGGGGTTTGGGTGGGA+AGG 0.478855 5.4:-34609043 None:intergenic
GGTTGCTTTGGATGACAAGC+TGG 0.481650 5.4:+34609365 MS.gene99264:CDS
TATTGAATTCAAGGAGGTTG+GGG 0.481755 5.4:-34609155 None:intergenic
TTGCAGTAAGCTTTCAAGAT+CGG 0.484880 5.4:-34609978 None:intergenic
ATTACTGGCTATGTTAAGGC+TGG 0.488447 5.4:+34609642 MS.gene99264:CDS
GAGAGGATAAATGGGTGAGA+AGG 0.488851 5.4:-34609071 None:intergenic
TCATAGAAAGAAGGAGGGTA+TGG 0.489969 5.4:-34609182 None:intergenic
AATCCAAAACTAAACACATC+AGG 0.490880 5.4:-34609507 None:intergenic
GGAAGGAATGATGGGTAGTG+AGG 0.491407 5.4:-34609026 None:intergenic
CTAGGGTTCTTGATTTGAAA+GGG 0.500129 5.4:+34610156 MS.gene99264:CDS
GTTCTCCATTATCATCATCA+TGG 0.506725 5.4:-34608870 None:intergenic
GTAAAGAGATGGAGTTTCGG+AGG 0.513254 5.4:-34608797 None:intergenic
AACTCTGTCAGCATCAGTTA+CGG 0.514036 5.4:-34609454 None:intergenic
AATTAGTGAGGGGTTTGGGT+GGG 0.514397 5.4:-34609047 None:intergenic
TAATCAGGGACAAGTATGTC+TGG 0.515514 5.4:-34610388 None:intergenic
GTTAGCAGGGGATGGGCCGA+AGG 0.520097 5.4:+34610475 MS.gene99264:CDS
AAGCGAAAGTTAGCAGGGGA+TGG 0.520299 5.4:+34610467 MS.gene99264:CDS
GGCAGCTTTCTTAGATGAGG+TGG 0.521040 5.4:+34610232 MS.gene99264:CDS
AGTGATTGTGGTGCTGAAGT+TGG 0.525709 5.4:-34608907 None:intergenic
CACCGCCCCACAAATGAAAA+GGG 0.527747 5.4:-34609272 None:intergenic
TTTGGGTGGGAAGGAATGAT+GGG 0.531763 5.4:-34609034 None:intergenic
TAGTAGTTCAGGTCTAAAGT+TGG 0.534004 5.4:+34610043 MS.gene99264:CDS
CTCCCTTGACCATAGCATAC+AGG 0.534135 5.4:-34610532 None:intergenic
CTTGATGAGATGAATGTGTT+GGG 0.535158 5.4:+34609927 MS.gene99264:CDS
GTTAAGGAATATCTTTGTAA+GGG 0.536300 5.4:+34609765 MS.gene99264:CDS
CACTGACTGAAAGTCTTGAC+CGG 0.539986 5.4:-34610105 None:intergenic
TTGATAGAAACATCCATGTC+CGG 0.542115 5.4:+34610086 MS.gene99264:CDS
TGTAATGATGTTGTGGAATG+AGG 0.543482 5.4:+34610442 MS.gene99264:CDS
TGGCGGATTTCATAGAAAGA+AGG 0.547449 5.4:-34609191 None:intergenic
AATGAAAAGGGATAAAGAAA+CGG 0.553013 5.4:-34609260 None:intergenic
GCTAGGGTTCTTGATTTGAA+AGG 0.554236 5.4:+34610155 MS.gene99264:CDS
CGGATTTCATAGAAAGAAGG+AGG 0.561755 5.4:-34609188 None:intergenic
GAATGTGTTGGGAGGCTCTG+TGG 0.562839 5.4:+34609938 MS.gene99264:CDS
AGCGAAAGTTAGCAGGGGAT+GGG 0.562936 5.4:+34610468 MS.gene99264:CDS
TTAGCAGGGGATGGGCCGAA+GGG 0.566169 5.4:+34610476 MS.gene99264:CDS
TCTTGATGAGATGAATGTGT+TGG 0.566910 5.4:+34609926 MS.gene99264:CDS
GAAGGAATGATGGGTAGTGA+GGG 0.568060 5.4:-34609025 None:intergenic
GCATTGCAAGCAGAAACATC+AGG 0.569511 5.4:-34609399 None:intergenic
TGAAGAGTAGTAAGTTGTTG+AGG 0.569660 5.4:-34608940 None:intergenic
ATTCCTGTATGCTATGGTCA+AGG 0.570553 5.4:+34610529 MS.gene99264:CDS
AGTTACTTGACTATAATGAC+AGG 0.574269 5.4:+34610179 MS.gene99264:CDS
AAGAAAGCTGCCATCAACTC+AGG 0.577664 5.4:-34610221 None:intergenic
TGATGCTGTTATGCAAGTTG+TGG 0.578174 5.4:+34610562 MS.gene99264:CDS
TGATGCATTCCTGTATGCTA+TGG 0.578318 5.4:+34610523 MS.gene99264:CDS
GGATTCAAGATGAAAACAGC+AGG 0.580492 5.4:-34609433 None:intergenic
TGAAGGAAAGAGTAAAGAGA+TGG 0.580741 5.4:-34608808 None:intergenic
TGAGGATCCTCGTATTGAAG+TGG 0.582306 5.4:+34610256 MS.gene99264:CDS
GGTGAGAAGGGAATTAGTGA+GGG 0.582566 5.4:-34609058 None:intergenic
GTTGGAATTATGTCCAAGCT+CGG 0.583093 5.4:+34609477 MS.gene99264:CDS
TCTCTGTTTAGGGACATGAG+AGG 0.585344 5.4:+34610131 MS.gene99264:CDS
GGGTGAGAAGGGAATTAGTG+AGG 0.588700 5.4:-34609059 None:intergenic
TTCCTGTATGCTATGGTCAA+GGG 0.590606 5.4:+34610530 MS.gene99264:CDS
TGGATGTTATTGTTGTTGAG+TGG 0.594265 5.4:-34608850 None:intergenic
GATGGCAGCTTTCTTAGATG+AGG 0.600387 5.4:+34610229 MS.gene99264:CDS
CTGCCATCAACTCAGGTCGA+TGG 0.604479 5.4:-34610214 None:intergenic
TCTGTTTAGGGACATGAGAG+GGG 0.605786 5.4:+34610133 MS.gene99264:CDS
TTCAGGTCTAAAGTTGGACG+TGG 0.606771 5.4:+34610049 MS.gene99264:CDS
AGGTTAAGCGAAAGTTAGCA+GGG 0.608905 5.4:+34610462 MS.gene99264:CDS
ATTTGAATAAAGAAGGCTGA+AGG 0.610863 5.4:-34608825 None:intergenic
GGTGTAAGGGAGAGTGATTG+TGG 0.618100 5.4:-34608919 None:intergenic
CGAAACATATCCGTTAATCA+GGG 0.620823 5.4:-34610402 None:intergenic
TAGCAGGGGATGGGCCGAAG+GGG 0.624535 5.4:+34610477 MS.gene99264:CDS
GAGGATCCTCGTATTGAAGT+GGG 0.632847 5.4:+34610257 MS.gene99264:CDS
GGAGGCTACTCTATTGGTGA+CGG 0.634065 5.4:+34610016 MS.gene99264:CDS
CTGTATGCTATGGTCAAGGG+AGG 0.634721 5.4:+34610533 MS.gene99264:CDS
CAAAGAGAATCGAACTGCGG+AGG 0.652528 5.4:+34609998 MS.gene99264:CDS
GTGAGAAGGGAATTAGTGAG+GGG 0.671747 5.4:-34609057 None:intergenic
GGATTGTATTGAATTCAAGG+AGG 0.680024 5.4:-34609161 None:intergenic
GATGAGATGAATGTGTTGGG+AGG 0.698363 5.4:+34609930 MS.gene99264:CDS
GGATTTCATAGAAAGAAGGA+GGG 0.700556 5.4:-34609187 None:intergenic
GAATGATAGAGATGATCACG+AGG 0.718081 5.4:+34609704 MS.gene99264:CDS
CTGCAAAGAGAATCGAACTG+CGG 0.726664 5.4:+34609995 MS.gene99264:CDS
TGAGTACCCACTTCAATACG+AGG 0.733899 5.4:-34610263 None:intergenic
GGTTAAGCGAAAGTTAGCAG+GGG 0.736858 5.4:+34610463 MS.gene99264:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAACATTTATTGTTTT+TGG - chr5.4:34609613-34609632 None:intergenic 10.0%
!!! TTTTATTCTAATTTGATTAC+TGG + chr5.4:34609627-34609646 MS.gene99264:CDS 15.0%
!! CTTATTTATATGCACTTAAA+GGG + chr5.4:34609535-34609554 MS.gene99264:CDS 20.0%
!!! TGAAAATATTTGTTGATAAG+TGG + chr5.4:34610600-34610619 MS.gene99264:CDS 20.0%
! AATGAAAAGGGATAAAGAAA+CGG - chr5.4:34609263-34609282 None:intergenic 25.0%
! AGTGGAAATTTGAATAAAGA+AGG - chr5.4:34608835-34608854 None:intergenic 25.0%
! AGTTAAGGAATATCTTTGTA+AGG + chr5.4:34609764-34609783 MS.gene99264:CDS 25.0%
! ATTCAAACTACTAAGAATAG+TGG - chr5.4:34609688-34609707 None:intergenic 25.0%
! CTTTGTAAGGGAAATATTAA+GGG + chr5.4:34609777-34609796 MS.gene99264:CDS 25.0%
! GCTTATTTATATGCACTTAA+AGG + chr5.4:34609534-34609553 MS.gene99264:CDS 25.0%
! GTTAAGGAATATCTTTGTAA+GGG + chr5.4:34609765-34609784 MS.gene99264:CDS 25.0%
! TCTTTGTAAGGGAAATATTA+AGG + chr5.4:34609776-34609795 MS.gene99264:CDS 25.0%
!! TATGGATTGTATTGAATTCA+AGG - chr5.4:34609167-34609186 None:intergenic 25.0%
!!! ATTTTGATGTAATGATGTTG+TGG + chr5.4:34610435-34610454 MS.gene99264:CDS 25.0%
!!! CACTTTTTGTTTAGTAGTTA+AGG + chr5.4:34609749-34609768 MS.gene99264:CDS 25.0%
!!! GCTTATTGCTTTTAAGAATT+GGG + chr5.4:34610706-34610725 MS.gene99264:CDS 25.0%
AATCCAAAACTAAACACATC+AGG - chr5.4:34609510-34609529 None:intergenic 30.0%
AGTTACTTGACTATAATGAC+AGG + chr5.4:34610179-34610198 MS.gene99264:CDS 30.0%
ATCAGTTTGAGAAGTGATAA+GGG - chr5.4:34608983-34609002 None:intergenic 30.0%
ATTTGAATAAAGAAGGCTGA+AGG - chr5.4:34608828-34608847 None:intergenic 30.0%
CTCTTCAAAAAGAGGTAAAA+AGG - chr5.4:34609337-34609356 None:intergenic 30.0%
GAAAAAGAATGTCAGAAAGA+TGG + chr5.4:34610679-34610698 MS.gene99264:CDS 30.0%
GAGAATGATCTTGTTCTATA+TGG - chr5.4:34608778-34608797 None:intergenic 30.0%
GTTAATGCATGTGTTAGTAT+TGG + chr5.4:34609879-34609898 MS.gene99264:CDS 30.0%
! AACATCCATGATGATGATAA+TGG + chr5.4:34608865-34608884 MS.gene99264:CDS 30.0%
! ATGCAAGAAGAACTTTTAGA+AGG + chr5.4:34610336-34610355 MS.gene99264:CDS 30.0%
! CTTTATCCCTTTTCATTTGT+GGG + chr5.4:34609266-34609285 MS.gene99264:CDS 30.0%
! TCTTTATCCCTTTTCATTTG+TGG + chr5.4:34609265-34609284 MS.gene99264:CDS 30.0%
! TGTTTCTATCAAAGCATCAT+AGG - chr5.4:34610078-34610097 None:intergenic 30.0%
! TTTATCCCTTTTCATTTGTG+GGG + chr5.4:34609267-34609286 MS.gene99264:CDS 30.0%
! TTTGATTACTGGCTATGTTA+AGG + chr5.4:34609638-34609657 MS.gene99264:CDS 30.0%
!! AAAGTTTTGATGCTTCGTTT+TGG + chr5.4:34609582-34609601 MS.gene99264:CDS 30.0%
!! ATCAAAGTTGATGAGTCTAT+AGG + chr5.4:34609846-34609865 MS.gene99264:CDS 30.0%
!! CGCTTATTGCTTTTAAGAAT+TGG + chr5.4:34610705-34610724 MS.gene99264:CDS 30.0%
!!! GTATTTTTGGATGAGAAAGA+GGG - chr5.4:34609136-34609155 None:intergenic 30.0%
!!! TCTTTTGAGATTGAGAATGT+CGG - chr5.4:34609100-34609119 None:intergenic 30.0%
ACATACTTGTCCCTGATTAA+CGG + chr5.4:34610392-34610411 MS.gene99264:CDS 35.0%
AGAGTAAAGAGATGGAGTTT+CGG - chr5.4:34608803-34608822 None:intergenic 35.0%
AGTAAGTTGTTGAGGTGTAA+GGG - chr5.4:34608935-34608954 None:intergenic 35.0%
ATCTGACAAGTGAAAAAGCA+GGG - chr5.4:34609227-34609246 None:intergenic 35.0%
CATCAGTTTGAGAAGTGATA+AGG - chr5.4:34608984-34609003 None:intergenic 35.0%
CGAAACATATCCGTTAATCA+GGG - chr5.4:34610405-34610424 None:intergenic 35.0%
CTTGATGAGATGAATGTGTT+GGG + chr5.4:34609927-34609946 MS.gene99264:CDS 35.0%
GACTATAATGACAGGTTTGA+TGG + chr5.4:34610187-34610206 MS.gene99264:CDS 35.0%
GAGAAGTGATAAGGGATTTA+TGG - chr5.4:34608975-34608994 None:intergenic 35.0%
GATCAAATTTGACCAGAATC+TGG + chr5.4:34610499-34610518 MS.gene99264:CDS 35.0%
GGATTGTATTGAATTCAAGG+AGG - chr5.4:34609164-34609183 None:intergenic 35.0%
GGATTTCATAGAAAGAAGGA+GGG - chr5.4:34609190-34609209 None:intergenic 35.0%
GTATTGAATTCAAGGAGGTT+GGG - chr5.4:34609159-34609178 None:intergenic 35.0%
GTTCTCCATTATCATCATCA+TGG - chr5.4:34608873-34608892 None:intergenic 35.0%
TAGTAAGTTGTTGAGGTGTA+AGG - chr5.4:34608936-34608955 None:intergenic 35.0%
TATTGAATTCAAGGAGGTTG+GGG - chr5.4:34609158-34609177 None:intergenic 35.0%
TCTTGATGAGATGAATGTGT+TGG + chr5.4:34609926-34609945 MS.gene99264:CDS 35.0%
TGAAGAGTAGTAAGTTGTTG+AGG - chr5.4:34608943-34608962 None:intergenic 35.0%
TGAAGGAAAGAGTAAAGAGA+TGG - chr5.4:34608811-34608830 None:intergenic 35.0%
TGTAATGATGTTGTGGAATG+AGG + chr5.4:34610442-34610461 MS.gene99264:CDS 35.0%
TGTATTGAATTCAAGGAGGT+TGG - chr5.4:34609160-34609179 None:intergenic 35.0%
TTGATAGAAACATCCATGTC+CGG + chr5.4:34610086-34610105 MS.gene99264:CDS 35.0%
TTGCAGTAAGCTTTCAAGAT+CGG - chr5.4:34609981-34610000 None:intergenic 35.0%
! AGTCAGTGTTTTCTCTGTTT+AGG + chr5.4:34610120-34610139 MS.gene99264:CDS 35.0%
! CCTGATTAACGGATATGTTT+CGG + chr5.4:34610403-34610422 MS.gene99264:CDS 35.0%
! CTAGGGTTCTTGATTTGAAA+GGG + chr5.4:34610156-34610175 MS.gene99264:CDS 35.0%
! GACATTCTTTTTCCTTAACC+TGG - chr5.4:34610672-34610691 None:intergenic 35.0%
! GTCAGTGTTTTCTCTGTTTA+GGG + chr5.4:34610121-34610140 MS.gene99264:CDS 35.0%
! TAGTAGTTCAGGTCTAAAGT+TGG + chr5.4:34610043-34610062 MS.gene99264:CDS 35.0%
! TGAAGTTGGCAGATGATTTT+GGG - chr5.4:34608896-34608915 None:intergenic 35.0%
! TGGATGTTATTGTTGTTGAG+TGG - chr5.4:34608853-34608872 None:intergenic 35.0%
!! AAGCCTGATGTGTTTAGTTT+TGG + chr5.4:34609504-34609523 MS.gene99264:CDS 35.0%
!! ATTGCTTTTAAGAATTGGGC+TGG + chr5.4:34610710-34610729 MS.gene99264:CDS 35.0%
!! GTTGATGAGTCTATAGGTTT+TGG + chr5.4:34609852-34609871 MS.gene99264:CDS 35.0%
!! TCTTTTTGAAGAGAACTGCA+GGG + chr5.4:34609344-34609363 MS.gene99264:CDS 35.0%
!!! CTTTTGAGATTGAGAATGTC+GGG - chr5.4:34609099-34609118 None:intergenic 35.0%
!!! GGTATTTTTGGATGAGAAAG+AGG - chr5.4:34609137-34609156 None:intergenic 35.0%
AAAGAGGTAAAAAGGCAGCA+AGG - chr5.4:34609329-34609348 None:intergenic 40.0%
AACTCTGTCAGCATCAGTTA+CGG - chr5.4:34609457-34609476 None:intergenic 40.0%
AGAGGATAAATGGGTGAGAA+GGG - chr5.4:34609073-34609092 None:intergenic 40.0%
AGGTTAAGCGAAAGTTAGCA+GGG + chr5.4:34610462-34610481 MS.gene99264:CDS 40.0%
ATAAAAAGCTCAAAGTCGCC+AGG + chr5.4:34610651-34610670 MS.gene99264:CDS 40.0%
ATTCCTGTATGCTATGGTCA+AGG + chr5.4:34610529-34610548 MS.gene99264:CDS 40.0%
CCGAAACATATCCGTTAATC+AGG - chr5.4:34610406-34610425 None:intergenic 40.0%
CGGATTTCATAGAAAGAAGG+AGG - chr5.4:34609191-34609210 None:intergenic 40.0%
CTGCAGTTCTCTTCAAAAAG+AGG - chr5.4:34609345-34609364 None:intergenic 40.0%
CTTCTCAAACTGATGAAGCT+TGG + chr5.4:34608989-34609008 MS.gene99264:CDS 40.0%
GAATGATAGAGATGATCACG+AGG + chr5.4:34609704-34609723 MS.gene99264:CDS 40.0%
GACAAGTATGTCTGGTCATT+CGG - chr5.4:34610383-34610402 None:intergenic 40.0%
GATCTGACAAGTGAAAAAGC+AGG - chr5.4:34609228-34609247 None:intergenic 40.0%
GCAAGTTGTGGAGAAATCTA+AGG + chr5.4:34610574-34610593 MS.gene99264:CDS 40.0%
GGATTCAAGATGAAAACAGC+AGG - chr5.4:34609436-34609455 None:intergenic 40.0%
GTTGGAATTATGTCCAAGCT+CGG + chr5.4:34609477-34609496 MS.gene99264:CDS 40.0%
TAATCAGGGACAAGTATGTC+TGG - chr5.4:34610391-34610410 None:intergenic 40.0%
TCATAGAAAGAAGGAGGGTA+TGG - chr5.4:34609185-34609204 None:intergenic 40.0%
TCTGACAAGTGAAAAAGCAG+GGG - chr5.4:34609226-34609245 None:intergenic 40.0%
TGATGCATTCCTGTATGCTA+TGG + chr5.4:34610523-34610542 MS.gene99264:CDS 40.0%
TGATGCTGTTATGCAAGTTG+TGG + chr5.4:34610562-34610581 MS.gene99264:CDS 40.0%
TGGTCAAATTTGATCCCCTT+CGG - chr5.4:34610494-34610513 None:intergenic 40.0%
TTCCTGTATGCTATGGTCAA+GGG + chr5.4:34610530-34610549 MS.gene99264:CDS 40.0%
TTGAAGTGGGTACTCATGAT+TGG + chr5.4:34610270-34610289 MS.gene99264:CDS 40.0%
TTTCTTAGATGAGGTGGTTG+AGG + chr5.4:34610238-34610257 MS.gene99264:CDS 40.0%
! ATTACTGGCTATGTTAAGGC+TGG + chr5.4:34609642-34609661 MS.gene99264:CDS 40.0%
! CTGAAGTTGGCAGATGATTT+TGG - chr5.4:34608897-34608916 None:intergenic 40.0%
! GAAGTTGGCAGATGATTTTG+GGG - chr5.4:34608895-34608914 None:intergenic 40.0%
! GCTAGGGTTCTTGATTTGAA+AGG + chr5.4:34610155-34610174 MS.gene99264:CDS 40.0%
!! ATCCACGCTTTTTGTAAAGC+CGG + chr5.4:34610302-34610321 MS.gene99264:CDS 40.0%
!! CTCTTTTTGAAGAGAACTGC+AGG + chr5.4:34609343-34609362 MS.gene99264:CDS 40.0%
!! TGGCGGATTTCATAGAAAGA+AGG - chr5.4:34609194-34609213 None:intergenic 40.0%
AAGAAAGCTGCCATCAACTC+AGG - chr5.4:34610224-34610243 None:intergenic 45.0%
AAGGGAATTAGTGAGGGGTT+TGG - chr5.4:34609055-34609074 None:intergenic 45.0%
AATTAGTGAGGGGTTTGGGT+GGG - chr5.4:34609050-34609069 None:intergenic 45.0%
ACTGATGCTGACAGAGTTGT+TGG + chr5.4:34609459-34609478 MS.gene99264:CDS 45.0%
AGGGAATTAGTGAGGGGTTT+GGG - chr5.4:34609054-34609073 None:intergenic 45.0%
ATTGAGAATGTCGGGAAGAG+AGG - chr5.4:34609091-34609110 None:intergenic 45.0%
CTCTGTTTAGGGACATGAGA+GGG + chr5.4:34610132-34610151 MS.gene99264:CDS 45.0%
CTGACAAGTGAAAAAGCAGG+GGG - chr5.4:34609225-34609244 None:intergenic 45.0%
CTGCAAAGAGAATCGAACTG+CGG + chr5.4:34609995-34610014 MS.gene99264:CDS 45.0%
GAGAGGATAAATGGGTGAGA+AGG - chr5.4:34609074-34609093 None:intergenic 45.0%
GAGATACAAGCAAGCGTTCA+TGG + chr5.4:34610622-34610641 MS.gene99264:CDS 45.0%
GAGATGATCACGAGGAAGTT+TGG + chr5.4:34609712-34609731 MS.gene99264:CDS 45.0%
GAGGATCCTCGTATTGAAGT+GGG + chr5.4:34610257-34610276 MS.gene99264:CDS 45.0%
GAGGTTAAGCGAAAGTTAGC+AGG + chr5.4:34610461-34610480 MS.gene99264:CDS 45.0%
GATGAGATGAATGTGTTGGG+AGG + chr5.4:34609930-34609949 MS.gene99264:CDS 45.0%
GATGGCAGCTTTCTTAGATG+AGG + chr5.4:34610229-34610248 MS.gene99264:CDS 45.0%
GCATTGCAAGCAGAAACATC+AGG - chr5.4:34609402-34609421 None:intergenic 45.0%
GGAATGCATCAACCAGATTC+TGG - chr5.4:34610514-34610533 None:intergenic 45.0%
GGTGAGAAGGGAATTAGTGA+GGG - chr5.4:34609061-34609080 None:intergenic 45.0%
GGTTAAGCGAAAGTTAGCAG+GGG + chr5.4:34610463-34610482 MS.gene99264:CDS 45.0%
GTAAAGAGATGGAGTTTCGG+AGG - chr5.4:34608800-34608819 None:intergenic 45.0%
GTCGGGAAGAGAGGATAAAT+GGG - chr5.4:34609082-34609101 None:intergenic 45.0%
GTGAGAAGGGAATTAGTGAG+GGG - chr5.4:34609060-34609079 None:intergenic 45.0%
TCTCTGTTTAGGGACATGAG+AGG + chr5.4:34610131-34610150 MS.gene99264:CDS 45.0%
TCTGTTTAGGGACATGAGAG+GGG + chr5.4:34610133-34610152 MS.gene99264:CDS 45.0%
TGAGGATCCTCGTATTGAAG+TGG + chr5.4:34610256-34610275 MS.gene99264:CDS 45.0%
TGAGTACCCACTTCAATACG+AGG - chr5.4:34610266-34610285 None:intergenic 45.0%
TGTCGGGAAGAGAGGATAAA+TGG - chr5.4:34609083-34609102 None:intergenic 45.0%
TTTGGGTGGGAAGGAATGAT+GGG - chr5.4:34609037-34609056 None:intergenic 45.0%
! AGTGATTGTGGTGCTGAAGT+TGG - chr5.4:34608910-34608929 None:intergenic 45.0%
! ATCCCTTTTCATTTGTGGGG+CGG + chr5.4:34609270-34609289 MS.gene99264:CDS 45.0%
! CACTGACTGAAAGTCTTGAC+CGG - chr5.4:34610108-34610127 None:intergenic 45.0%
! GGCTGGTGATTTAGTTTCTG+TGG + chr5.4:34609659-34609678 MS.gene99264:CDS 45.0%
! GTGACGGAGATTAGTAGTTC+AGG + chr5.4:34610032-34610051 MS.gene99264:CDS 45.0%
! TTCAGGTCTAAAGTTGGACG+TGG + chr5.4:34610049-34610068 MS.gene99264:CDS 45.0%
!! CAAGGAGGTTGGGGTATTTT+TGG - chr5.4:34609149-34609168 None:intergenic 45.0%
!! GAAGGAATGATGGGTAGTGA+GGG - chr5.4:34609028-34609047 None:intergenic 45.0%
!! TCCACGCTTTTTGTAAAGCC+GGG + chr5.4:34610303-34610322 MS.gene99264:CDS 45.0%
AACTGCGGAGGCTACTCTAT+TGG + chr5.4:34610010-34610029 MS.gene99264:CDS 50.0%
AAGCGAAAGTTAGCAGGGGA+TGG + chr5.4:34610467-34610486 MS.gene99264:CDS 50.0%
AATGTGTTGGGAGGCTCTGT+GGG + chr5.4:34609939-34609958 MS.gene99264:CDS 50.0%
ACACCGCCCCACAAATGAAA+AGG - chr5.4:34609276-34609295 None:intergenic 50.0%
AGAGAACTGCAGGGTTGCTT+TGG + chr5.4:34609353-34609372 MS.gene99264:CDS 50.0%
AGCGAAAGTTAGCAGGGGAT+GGG + chr5.4:34610468-34610487 MS.gene99264:CDS 50.0%
AGCTCAAAGTCGCCAGGTTA+AGG + chr5.4:34610657-34610676 MS.gene99264:CDS 50.0%
ATCAGGCTTAACACCGAGCT+TGG - chr5.4:34609493-34609512 None:intergenic 50.0%
CAAAGAGAATCGAACTGCGG+AGG + chr5.4:34609998-34610017 MS.gene99264:CDS 50.0%
CACCGCCCCACAAATGAAAA+GGG - chr5.4:34609275-34609294 None:intergenic 50.0%
CTCCCTTGACCATAGCATAC+AGG - chr5.4:34610535-34610554 None:intergenic 50.0%
CTGAAAGTCTTGACCGGACA+TGG - chr5.4:34610102-34610121 None:intergenic 50.0%
CTGTATGCTATGGTCAAGGG+AGG + chr5.4:34610533-34610552 MS.gene99264:CDS 50.0%
GAATTAGTGAGGGGTTTGGG+TGG - chr5.4:34609051-34609070 None:intergenic 50.0%
GGAGGCTACTCTATTGGTGA+CGG + chr5.4:34610016-34610035 MS.gene99264:CDS 50.0%
GGCAGCTTTCTTAGATGAGG+TGG + chr5.4:34610232-34610251 MS.gene99264:CDS 50.0%
GGGTGAGAAGGGAATTAGTG+AGG - chr5.4:34609062-34609081 None:intergenic 50.0%
GGTCATTCGGCTCAAATTGC+AGG - chr5.4:34610370-34610389 None:intergenic 50.0%
GGTGTAAGGGAGAGTGATTG+TGG - chr5.4:34608922-34608941 None:intergenic 50.0%
GTTTGGGTGGGAAGGAATGA+TGG - chr5.4:34609038-34609057 None:intergenic 50.0%
TCCCGGCTTTACAAAAAGCG+TGG - chr5.4:34610307-34610326 None:intergenic 50.0%
TCTTGCATCTTCTAGCCTCC+CGG - chr5.4:34610324-34610343 None:intergenic 50.0%
! GAACCATCGACCTGAGTTGA+TGG + chr5.4:34610211-34610230 MS.gene99264:CDS 50.0%
! GGTTGCTTTGGATGACAAGC+TGG + chr5.4:34609365-34609384 MS.gene99264:CDS 50.0%
!! ACGCTTTTTGTAAAGCCGGG+AGG + chr5.4:34610306-34610325 MS.gene99264:CDS 50.0%
!! GGAAGGAATGATGGGTAGTG+AGG - chr5.4:34609029-34609048 None:intergenic 50.0%
AAAAGCAGGGGGAGCAGTGT+TGG - chr5.4:34609214-34609233 None:intergenic 55.0%
CTGCCATCAACTCAGGTCGA+TGG - chr5.4:34610217-34610236 None:intergenic 55.0%
GAATGTGTTGGGAGGCTCTG+TGG + chr5.4:34609938-34609957 MS.gene99264:CDS 55.0%
TAGGGACATGAGAGGGGCTA+GGG + chr5.4:34610139-34610158 MS.gene99264:CDS 55.0%
TTAGGGACATGAGAGGGGCT+AGG + chr5.4:34610138-34610157 MS.gene99264:CDS 55.0%
AGTGAGGGGTTTGGGTGGGA+AGG - chr5.4:34609046-34609065 None:intergenic 60.0%
TGGGAGGCTCTGTGGGTCTT+GGG + chr5.4:34609946-34609965 MS.gene99264:CDS 60.0%
TTAGCAGGGGATGGGCCGAA+GGG + chr5.4:34610476-34610495 MS.gene99264:CDS 60.0%
TTGGGAGGCTCTGTGGGTCT+TGG + chr5.4:34609945-34609964 MS.gene99264:CDS 60.0%
GGGAGGCTCTGTGGGTCTTG+GGG + chr5.4:34609947-34609966 MS.gene99264:CDS 65.0%
GTTAGCAGGGGATGGGCCGA+AGG + chr5.4:34610475-34610494 MS.gene99264:CDS 65.0%
TAGCAGGGGATGGGCCGAAG+GGG + chr5.4:34610477-34610496 MS.gene99264:CDS 65.0%
! AGCAGGGGGAGCAGTGTTGG+CGG - chr5.4:34609211-34609230 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 34608742 34610745 34608742 ID=MS.gene99264
chr5.4 mRNA 34608742 34610745 34608742 ID=MS.gene99264.t1;Parent=MS.gene99264
chr5.4 exon 34608742 34610745 34608742 ID=MS.gene99264.t1.exon1;Parent=MS.gene99264.t1
chr5.4 CDS 34608742 34610745 34608742 ID=cds.MS.gene99264.t1;Parent=MS.gene99264.t1
Gene Sequence

>MS.gene99264

ATGGCGAAAAAACTTATGAAGTTGAATGTTGTTCCATATAGAACAAGATCATTCTCCTCCGAAACTCCATCTCTTTACTCTTTCCTTCAGCCTTCTTTATTCAAATTTCCACTCAACAACAATAACATCCATGATGATGATAATGGAGAACCCCAAAATCATCTGCCAACTTCAGCACCACAATCACTCTCCCTTACACCTCAACAACTTACTACTCTTCAAACAACTCTCCATAAATCCCTTATCACTTCTCAAACTGATGAAGCTTGGAAATCTTTCAAAACCCTCACTACCCATCATTCCTTCCCACCCAAACCCCTCACTAATTCCCTTCTCACCCATTTATCCTCTCTTCCCGACATTCTCAATCTCAAAAGAGCTTTCGCATCAACCCTCTTTCTCATCCAAAAATACCCCAACCTCCTTGAATTCAATACAATCCATACCCTCCTTCTTTCTATGAAATCCGCCAACACTGCTCCCCCTGCTTTTTCACTTGTCAGATCAATGTTCAAATACCGTTTCTTTATCCCTTTTCATTTGTGGGGCGGTGTGCTCGTTGATATTGCTAGAAACAATGACAACCTTGCTGCCTTTTTACCTCTTTTTGAAGAGAACTGCAGGGTTGCTTTGGATGACAAGCTGGATTTCATGATACCTGATGTTTCTGCTTGCAATGCTGCTCTTCAAGCCTGCTGTTTTCATCTTGAATCCGTAACTGATGCTGACAGAGTTGTTGGAATTATGTCCAAGCTCGGTGTTAAGCCTGATGTGTTTAGTTTTGGATTTCTTGCTTATTTATATGCACTTAAAGGGTTACAAGATAAGATAGATGAGTTAAAAGTTTTGATGCTTCGTTTTGGTTACTCCAAAAACAATAAATGTTTTTATTCTAATTTGATTACTGGCTATGTTAAGGCTGGTGATTTAGTTTCTGTGGAGTCCACTATTCTTAGTAGTTTGAATGATAGAGATGATCACGAGGAAGTTTGGAATTTCGATAGAGACACTTTTTGTTTAGTAGTTAAGGAATATCTTTGTAAGGGAAATATTAAGGGTTTAGCTAATTTGATTATCGAAGCTCAAAAATTAGAGTCTTCGAATATCAAAGTTGATGAGTCTATAGGTTTTGGTATTGTTAATGCATGTGTTAGTATTGGATTATCAGACAAAGCACACAGTATTCTTGATGAGATGAATGTGTTGGGAGGCTCTGTGGGTCTTGGGGTCTATGTGCCGATCTTGAAAGCTTACTGCAAAGAGAATCGAACTGCGGAGGCTACTCTATTGGTGACGGAGATTAGTAGTTCAGGTCTAAAGTTGGACGTGGAAACCTATGATGCTTTGATAGAAACATCCATGTCCGGTCAAGACTTTCAGTCAGTGTTTTCTCTGTTTAGGGACATGAGAGGGGCTAGGGTTCTTGATTTGAAAGGGAGTTACTTGACTATAATGACAGGTTTGATGGAGAACCATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGAGGATCCTCGTATTGAAGTGGGTACTCATGATTGGAATTCTATAATCCACGCTTTTTGTAAAGCCGGGAGGCTAGAAGATGCAAGAAGAACTTTTAGAAGGATGACATTCCTGCAATTTGAGCCGAATGACCAGACATACTTGTCCCTGATTAACGGATATGTTTCGGCAGAAAAATATTTTGATGTAATGATGTTGTGGAATGAGGTTAAGCGAAAGTTAGCAGGGGATGGGCCGAAGGGGATCAAATTTGACCAGAATCTGGTTGATGCATTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAAATCTAAGGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCGTTCATGGAGACACATAAAAAGCTCAAAGTCGCCAGGTTAAGGAAAAAGAATGTCAGAAAGATGGAAGCGCTTATTGCTTTTAAGAATTGGGCTGGCTTAAATGCATGA

Protein sequence

>MS.gene99264.t1

MAKKLMKLNVVPYRTRSFSSETPSLYSFLQPSLFKFPLNNNNIHDDDNGEPQNHLPTSAPQSLSLTPQQLTTLQTTLHKSLITSQTDEAWKSFKTLTTHHSFPPKPLTNSLLTHLSSLPDILNLKRAFASTLFLIQKYPNLLEFNTIHTLLLSMKSANTAPPAFSLVRSMFKYRFFIPFHLWGGVLVDIARNNDNLAAFLPLFEENCRVALDDKLDFMIPDVSACNAALQACCFHLESVTDADRVVGIMSKLGVKPDVFSFGFLAYLYALKGLQDKIDELKVLMLRFGYSKNNKCFYSNLITGYVKAGDLVSVESTILSSLNDRDDHEEVWNFDRDTFCLVVKEYLCKGNIKGLANLIIEAQKLESSNIKVDESIGFGIVNACVSIGLSDKAHSILDEMNVLGGSVGLGVYVPILKAYCKENRTAEATLLVTEISSSGLKLDVETYDALIETSMSGQDFQSVFSLFRDMRGARVLDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSLINGYVSAEKYFDVMMLWNEVKRKLAGDGPKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSKEMKIFVDKWRYKQAFMETHKKLKVARLRKKNVRKMEALIAFKNWAGLNA