Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99418.t1 | XP_024640456.1 | 88.9 | 1310 | 125 | 3 | 3 | 1294 | 1 | 1307 | 0.00E+00 | 2338.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99418.t1 | Q7G9P4 | 59.2 | 1300 | 475 | 12 | 16 | 1294 | 3 | 1267 | 0.0e+00 | 1527.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99418.t1 | A0A396I152 | 88.9 | 1310 | 125 | 3 | 3 | 1294 | 1 | 1307 | 0.0e+00 | 2338.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene99418 | MS.gene31092 | PPI |
MS.gene99418 | MS.gene45551 | PPI |
MS.gene99418 | MS.gene78384 | PPI |
MS.gene052054 | MS.gene99418 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99418.t1 | MTR_5g087390 | 88.181 | 1303 | 119 | 3 | 3 | 1288 | 1 | 1285 | 0.0 | 2369 |
MS.gene99418.t1 | MTR_5g087410 | 76.970 | 1307 | 273 | 9 | 3 | 1288 | 1 | 1300 | 0.0 | 2006 |
MS.gene99418.t1 | MTR_5g087410 | 76.301 | 1249 | 268 | 9 | 3 | 1230 | 1 | 1242 | 0.0 | 1892 |
MS.gene99418.t1 | MTR_2g098030 | 30.636 | 1384 | 773 | 40 | 3 | 1291 | 1 | 1292 | 1.59e-157 | 509 |
MS.gene99418.t1 | MTR_2g098030 | 30.713 | 1374 | 766 | 39 | 12 | 1291 | 15 | 1296 | 2.20e-157 | 509 |
MS.gene99418.t1 | MTR_2g098030 | 30.132 | 1291 | 717 | 38 | 95 | 1291 | 3 | 1202 | 4.92e-149 | 484 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99418.t1 | AT2G27150 | 59.274 | 1294 | 471 | 11 | 16 | 1288 | 3 | 1261 | 0.0 | 1545 |
MS.gene99418.t1 | AT2G27150 | 59.274 | 1294 | 471 | 11 | 16 | 1288 | 3 | 1261 | 0.0 | 1545 |
MS.gene99418.t1 | AT1G04580 | 57.948 | 1296 | 483 | 13 | 16 | 1288 | 6 | 1262 | 0.0 | 1517 |
MS.gene99418.t1 | AT3G43600 | 58.520 | 1297 | 463 | 15 | 15 | 1288 | 2 | 1246 | 0.0 | 1515 |
MS.gene99418.t1 | AT5G20960 | 57.318 | 1305 | 505 | 16 | 10 | 1288 | 15 | 1293 | 0.0 | 1464 |
MS.gene99418.t1 | AT5G20960 | 57.318 | 1305 | 505 | 16 | 10 | 1288 | 15 | 1293 | 0.0 | 1464 |
MS.gene99418.t1 | AT2G27150 | 58.312 | 1197 | 443 | 11 | 16 | 1191 | 3 | 1164 | 0.0 | 1388 |
MS.gene99418.t1 | AT2G27150 | 57.712 | 1180 | 443 | 11 | 130 | 1288 | 1 | 1145 | 0.0 | 1384 |
MS.gene99418.t1 | AT2G27150 | 57.712 | 1180 | 443 | 11 | 130 | 1288 | 1 | 1145 | 0.0 | 1384 |
MS.gene99418.t1 | AT2G27150 | 56.510 | 1083 | 415 | 11 | 130 | 1191 | 1 | 1048 | 0.0 | 1226 |
MS.gene99418.t1 | AT4G34890 | 30.909 | 1375 | 767 | 39 | 11 | 1291 | 12 | 1297 | 9.73e-158 | 509 |
MS.gene99418.t1 | AT4G34900 | 30.925 | 1384 | 759 | 38 | 9 | 1291 | 2 | 1289 | 5.66e-157 | 507 |
MS.gene99418.t1 | AT4G34900 | 30.354 | 1298 | 708 | 37 | 95 | 1291 | 3 | 1205 | 5.29e-148 | 481 |
MS.gene99418.t1 | AT4G34900 | 29.701 | 1239 | 692 | 35 | 9 | 1163 | 2 | 1145 | 6.36e-125 | 416 |
MS.gene99418.t1 | AT1G02590 | 66.000 | 50 | 17 | 0 | 1175 | 1224 | 26 | 75 | 1.45e-17 | 79.3 |
Find 284 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTGGGGTTGAACTCTTTC+TGG | 0.120155 | 5.1:-68892473 | MS.gene99418:CDS |
GATAACATTAGAGGAATTTC+TGG | 0.182722 | 5.1:-68891851 | MS.gene99418:CDS |
ATTGGAGCAAAGACAATATT+TGG | 0.188110 | 5.1:-68890780 | MS.gene99418:CDS |
GGAATGTGTGTTTCACTCTT+TGG | 0.220249 | 5.1:-68892669 | MS.gene99418:CDS |
GTCAACCAAAGGATCATATT+TGG | 0.226270 | 5.1:+68892857 | None:intergenic |
GATATATCACCAACGTGTTT+TGG | 0.248339 | 5.1:+68890458 | None:intergenic |
AAAGGAGCTTCATAACTTAT+TGG | 0.262425 | 5.1:-68892298 | MS.gene99418:CDS |
CTCAACCCTGCTGTGGATTT+AGG | 0.264694 | 5.1:-68886734 | MS.gene99418:CDS |
GAATATGAAACAGACCTTAA+TGG | 0.268609 | 5.1:-68886235 | MS.gene99418:CDS |
GATCAATCAGGGATTGAAAT+TGG | 0.273893 | 5.1:-68892132 | MS.gene99418:CDS |
TGCATTAGAGCTTGAGATAT+TGG | 0.276407 | 5.1:-68888372 | MS.gene99418:CDS |
AAGCATTAAAATTCCAAGTT+TGG | 0.276510 | 5.1:-68891794 | MS.gene99418:CDS |
AGCCCTGAATTGCGGCTAAA+TGG | 0.280420 | 5.1:-68890852 | MS.gene99418:CDS |
AGTACACTTTCCAAACTTAA+TGG | 0.287661 | 5.1:+68891820 | None:intergenic |
GGAAAGACCACCATTAAGTT+TGG | 0.289701 | 5.1:-68891830 | MS.gene99418:CDS |
ATTACTCGAACATTACTTTC+AGG | 0.295763 | 5.1:+68890079 | None:intergenic |
TGATGTTGATATGGAGGATT+TGG | 0.299273 | 5.1:-68892490 | MS.gene99418:CDS |
AATCGTCAAGAGCCACCTTC+TGG | 0.300801 | 5.1:-68892618 | MS.gene99418:CDS |
GAATGTGTGTTTCACTCTTT+GGG | 0.305217 | 5.1:-68892668 | MS.gene99418:CDS |
CCGATTCATGAAAGGTTTGC+AGG | 0.307070 | 5.1:-68892726 | MS.gene99418:CDS |
ACTCCAACTTTATTGTCATC+TGG | 0.307981 | 5.1:-68891286 | MS.gene99418:CDS |
GATATCAGTTTGAAGAAATC+TGG | 0.313531 | 5.1:+68886778 | None:intergenic |
AGTATACCTTGCCTTCAATA+TGG | 0.315312 | 5.1:-68888051 | MS.gene99418:CDS |
TTGAATTGGGTCAGGGTCTC+TGG | 0.316224 | 5.1:-68887841 | MS.gene99418:CDS |
GTCTCAATACTATTTCTATA+TGG | 0.316640 | 5.1:-68890212 | MS.gene99418:CDS |
AATGCTCCATGTAAGCAATT+TGG | 0.318094 | 5.1:+68890921 | None:intergenic |
GCACAGGCCCACCAGTTTAA+AGG | 0.321460 | 5.1:-68892316 | MS.gene99418:CDS |
TTTGTCGCTGCACTGGTTAT+AGG | 0.322219 | 5.1:-68892545 | MS.gene99418:CDS |
AATCCATTTAGCCGCAATTC+AGG | 0.330297 | 5.1:+68890849 | None:intergenic |
GATGCTTGTAGGCTGTCTTT+TGG | 0.335416 | 5.1:-68891616 | MS.gene99418:CDS |
TTCCTTGTTGAGGTGTCTCC+AGG | 0.336485 | 5.1:-68891664 | MS.gene99418:CDS |
GATGTTGATATGGAGGATTT+GGG | 0.337632 | 5.1:-68892489 | MS.gene99418:CDS |
GCAATCTCTTCTGCAAATAA+AGG | 0.340830 | 5.1:+68890750 | None:intergenic |
TCGATGATGTACCTCAATTA+TGG | 0.343681 | 5.1:-68887007 | MS.gene99418:CDS |
AACATTGTATGTTATCTTCA+TGG | 0.344392 | 5.1:+68888421 | None:intergenic |
TCATTCTATGATCATTGTTA+TGG | 0.348730 | 5.1:-68888085 | MS.gene99418:CDS |
ATGGGAGACACTTATTCTTC+AGG | 0.357039 | 5.1:-68887576 | MS.gene99418:intron |
GCATCTTCAACAGATAAAAT+AGG | 0.358083 | 5.1:+68890524 | None:intergenic |
CCTGGCTCCATTGGCGTCAC+TGG | 0.359969 | 5.1:+68892263 | None:intergenic |
AGCCAGTGTAGGTGGCAATT+TGG | 0.360862 | 5.1:-68891971 | MS.gene99418:CDS |
AAGTTGCCTCTGGGTTTATT+CGG | 0.362138 | 5.1:-68891999 | MS.gene99418:CDS |
TTCTTGATCCATACCCTTTG+AGG | 0.363208 | 5.1:+68886099 | None:intergenic |
TTGACGATTAGTCTTCTTCT+CGG | 0.369340 | 5.1:+68892632 | None:intergenic |
ACCAAAACTGAAAATGAGTA+TGG | 0.369575 | 5.1:-68893752 | None:intergenic |
TACTTTGTCCAAGAGACTTC+CGG | 0.373679 | 5.1:+68887763 | None:intergenic |
AATTTCCAAATATGATCCTT+TGG | 0.373997 | 5.1:-68892862 | MS.gene99418:CDS |
GTTATGAAGCTCCTTTAAAC+TGG | 0.374171 | 5.1:+68892305 | None:intergenic |
GAGGGCCCCTGGGGAAGTGC+AGG | 0.375620 | 5.1:-68888212 | MS.gene99418:CDS |
AACAGCTTACCGTTCAAGTT+TGG | 0.375902 | 5.1:-68891455 | MS.gene99418:CDS |
TAGTCAGAAACTTGCAGATA+TGG | 0.378413 | 5.1:-68890594 | MS.gene99418:CDS |
AAAGTTGTTGTGAATAATAC+TGG | 0.383435 | 5.1:-68892237 | MS.gene99418:CDS |
CTGCCAATGACAAACCATTA+AGG | 0.383797 | 5.1:+68886221 | None:intergenic |
GCAGCTCCCGATTTAATGAT+TGG | 0.384823 | 5.1:+68891217 | None:intergenic |
CATTACCCGCTTCAAGGACT+TGG | 0.386955 | 5.1:+68891260 | None:intergenic |
TGGAAAGCCAATCATTAAAT+CGG | 0.388993 | 5.1:-68891224 | MS.gene99418:CDS |
AAGATCAGAAAGGATCAATC+AGG | 0.390812 | 5.1:-68892144 | MS.gene99418:CDS |
GAGGCTGAAAAGGCTATTGC+AGG | 0.393419 | 5.1:-68892573 | MS.gene99418:CDS |
AGAAATTATGTCGCCCTGTC+AGG | 0.393516 | 5.1:-68888493 | MS.gene99418:CDS |
GGCCCTCATTGCAGATCTAC+TGG | 0.394323 | 5.1:+68888228 | None:intergenic |
GGGTCTGTTGTTGTTGAAGT+TGG | 0.396561 | 5.1:-68887869 | MS.gene99418:CDS |
AGGAAAGCAGCATTTAAGTA+TGG | 0.398894 | 5.1:+68891682 | None:intergenic |
AACTGAAGCAAAGTAGTTGA+TGG | 0.398984 | 5.1:+68893646 | None:intergenic |
ATTTGAATGGATAACATTAG+AGG | 0.402968 | 5.1:-68891860 | MS.gene99418:CDS |
TTAATGATTGGCTTTCCAAC+GGG | 0.404794 | 5.1:+68891229 | None:intergenic |
TCGAAAGACAGATATGATAA+TGG | 0.409902 | 5.1:-68888459 | MS.gene99418:CDS |
CAGATACGGGCTCTATCAAA+TGG | 0.411027 | 5.1:-68887595 | MS.gene99418:CDS |
CAGGCTTAGCTGCAATATCT+TGG | 0.411620 | 5.1:-68887654 | MS.gene99418:CDS |
GAAGTCTCTTGGACAAAGTA+AGG | 0.418571 | 5.1:-68887760 | MS.gene99418:CDS |
TGGAGAAATTGAATTGGGTC+AGG | 0.420837 | 5.1:-68887849 | MS.gene99418:CDS |
TACTTCAATAGCTTTAGATA+TGG | 0.423254 | 5.1:+68892098 | None:intergenic |
TTGTTGGTTGCAGGTGGTTG+TGG | 0.423686 | 5.1:-68892900 | MS.gene99418:intron |
GTGTCTCCAGGTGAAAATTC+TGG | 0.425787 | 5.1:-68891652 | MS.gene99418:CDS |
TGAAGTTGGAGAAATTGAAT+TGG | 0.425877 | 5.1:-68887855 | MS.gene99418:CDS |
AGACCTTAATGGTTTGTCAT+TGG | 0.428835 | 5.1:-68886224 | MS.gene99418:CDS |
GAAATTTAACATTCTTGTGC+TGG | 0.433011 | 5.1:+68892397 | None:intergenic |
TTTGAACATTAAACTGTTGA+GGG | 0.433694 | 5.1:+68886158 | None:intergenic |
CACGTAGAAGTTGGTTTCTC+CGG | 0.436049 | 5.1:+68891384 | None:intergenic |
CTCCAACTTTATTGTCATCT+GGG | 0.439075 | 5.1:-68891285 | MS.gene99418:CDS |
GAAGTTGGAGAAATTGAATT+GGG | 0.439710 | 5.1:-68887854 | MS.gene99418:CDS |
TCACCACCAAATTGCTTACA+TGG | 0.441078 | 5.1:-68890927 | MS.gene99418:CDS |
ACTTCTTGCTGTGGACTCAA+TGG | 0.442199 | 5.1:-68891905 | MS.gene99418:CDS |
GTAATGCAATTGTCTTCGTC+TGG | 0.443011 | 5.1:+68890166 | None:intergenic |
TACCGTTTCTGAGGCTGAAA+AGG | 0.443300 | 5.1:-68892583 | MS.gene99418:CDS |
TTCATCTTTAGGTACAATAG+TGG | 0.443890 | 5.1:+68891486 | None:intergenic |
ATGAGTAAACTCAGGGCATT+GGG | 0.446021 | 5.1:+68890129 | None:intergenic |
ATCGTCAAGAGCCACCTTCT+GGG | 0.447316 | 5.1:-68892617 | MS.gene99418:CDS |
TGAAGATAACATACAATGTT+GGG | 0.449813 | 5.1:-68888418 | MS.gene99418:CDS |
CAGAGGCAACTTTACTCATA+TGG | 0.450721 | 5.1:+68892010 | None:intergenic |
AATGTTGGGTTCAAGAATGA+TGG | 0.452588 | 5.1:-68888404 | MS.gene99418:CDS |
TAGACGTTCGCCGACACATC+TGG | 0.453483 | 5.1:+68890728 | None:intergenic |
AATGCAAAATCCTTCACAAA+AGG | 0.455224 | 5.1:+68891343 | None:intergenic |
CACGTTGGTGATATATCAAA+AGG | 0.455635 | 5.1:-68890452 | MS.gene99418:CDS |
CTCCATTGGCGTCACTGGCA+TGG | 0.457476 | 5.1:+68892268 | None:intergenic |
GATATTCATTACCCGCTTCA+AGG | 0.457937 | 5.1:+68891254 | None:intergenic |
CGATTTAGATACATCCTGAC+AGG | 0.458766 | 5.1:+68888479 | None:intergenic |
TGACGAAACCGGAAGTCTCT+TGG | 0.459097 | 5.1:-68887771 | MS.gene99418:CDS |
AGGGCATTTCCAAGCGGTCT+AGG | 0.459520 | 5.1:+68891706 | None:intergenic |
AATGATCCCTGCACTTCCCC+AGG | 0.459972 | 5.1:+68888205 | None:intergenic |
CATATGAGTAAAGTTGCCTC+TGG | 0.462187 | 5.1:-68892009 | MS.gene99418:CDS |
AAGAGTGAAACACACATTCC+AGG | 0.462764 | 5.1:+68892672 | None:intergenic |
AGTTTAACAGAATTAGTACT+TGG | 0.464285 | 5.1:-68887976 | MS.gene99418:CDS |
CCTGCAAACCTTTCATGAAT+CGG | 0.469701 | 5.1:+68892726 | None:intergenic |
GCTAACTTACTCCATATTGA+AGG | 0.469977 | 5.1:+68888040 | None:intergenic |
TTATGAGCAAAGAATTGAAA+TGG | 0.471183 | 5.1:-68888005 | MS.gene99418:CDS |
TGTGAAATTCAGGTGAAACT+TGG | 0.471229 | 5.1:-68890235 | MS.gene99418:intron |
TACATCATCGAGTTATTGTT+GGG | 0.472478 | 5.1:+68887019 | None:intergenic |
GGAAAAGCTGAAGGCAGATA+CGG | 0.475756 | 5.1:-68887609 | MS.gene99418:CDS |
TACCGTTCAAGTTTGGCAGC+TGG | 0.475910 | 5.1:-68891448 | MS.gene99418:CDS |
AATGAGTAAACTCAGGGCAT+TGG | 0.477125 | 5.1:+68890128 | None:intergenic |
AGATCTGCAATGAGGGCCCC+TGG | 0.477303 | 5.1:-68888223 | MS.gene99418:CDS |
GGTCCATGATAGATGCTTGT+AGG | 0.479012 | 5.1:-68891627 | MS.gene99418:CDS |
ATCCATTTAGCCGCAATTCA+GGG | 0.480081 | 5.1:+68890850 | None:intergenic |
CTGAGAAACACGGCTGGCAC+AGG | 0.480247 | 5.1:-68892332 | MS.gene99418:CDS |
TGCAGGTGAGGCTGTATTTG+TGG | 0.480256 | 5.1:-68890961 | MS.gene99418:intron |
CATCGTGTGCTTTCCTCAAA+GGG | 0.480446 | 5.1:-68886112 | MS.gene99418:CDS |
GTACATCATCGAGTTATTGT+TGG | 0.480903 | 5.1:+68887018 | None:intergenic |
ACCTGTCCTAAATCCACAGC+AGG | 0.484206 | 5.1:+68886728 | None:intergenic |
TTCCCAGATGACAATAAAGT+TGG | 0.484639 | 5.1:+68891283 | None:intergenic |
GAGTAATTACAAGAAGGGTC+GGG | 0.484682 | 5.1:-68890063 | MS.gene99418:CDS |
GATACCATCCTGCAGATTGA+AGG | 0.485211 | 5.1:-68886295 | MS.gene99418:intron |
ACAATTCAATGTGACGAAAC+CGG | 0.485612 | 5.1:-68887782 | MS.gene99418:CDS |
ACATAATTTAATGCATAGGC+AGG | 0.488749 | 5.1:+68886065 | None:intergenic |
AGTCATGCTGTGAAGCAGTC+AGG | 0.490880 | 5.1:-68887673 | MS.gene99418:CDS |
CCGAGTTTAACACTCTTGAA+TGG | 0.491117 | 5.1:+68893607 | None:intergenic |
CTGGACGAAGGTTAAACAAA+TGG | 0.491295 | 5.1:-68887822 | MS.gene99418:CDS |
TGTTGTGAATAATACTGGTA+TGG | 0.492861 | 5.1:-68892232 | MS.gene99418:CDS |
CGAGCTTCTCCTAGACCGCT+TGG | 0.493398 | 5.1:-68891715 | MS.gene99418:CDS |
ACATTGTATGTTATCTTCAT+GGG | 0.495139 | 5.1:+68888422 | None:intergenic |
ATGAAGATAACATACAATGT+TGG | 0.496764 | 5.1:-68888419 | MS.gene99418:CDS |
GAAGGCAAGGTATACTCAAA+AGG | 0.497702 | 5.1:+68888058 | None:intergenic |
GCATCGTGTGCTTTCCTCAA+AGG | 0.500192 | 5.1:-68886113 | MS.gene99418:CDS |
CGAGTAATTACAAGAAGGGT+CGG | 0.501180 | 5.1:-68890064 | MS.gene99418:CDS |
AAATGCTGCTTTCCTTGTTG+AGG | 0.501446 | 5.1:-68891674 | MS.gene99418:CDS |
GGGAACCTTTGTCGCTGCAC+TGG | 0.502740 | 5.1:-68892552 | MS.gene99418:CDS |
TGAATGGCACACAATTTGAA+TGG | 0.507343 | 5.1:-68891873 | MS.gene99418:CDS |
GATACAGTGAGCTTGATTCA+AGG | 0.507611 | 5.1:-68887725 | MS.gene99418:CDS |
CACCAAATTGCCACCTACAC+TGG | 0.513059 | 5.1:+68891969 | None:intergenic |
TGTGCTTTCCTCAAAGGGTA+TGG | 0.513252 | 5.1:-68886107 | MS.gene99418:CDS |
AAGACAGATATGATAATGGC+TGG | 0.513909 | 5.1:-68888455 | MS.gene99418:CDS |
GGAAAGCCAATCATTAAATC+GGG | 0.514302 | 5.1:-68891223 | MS.gene99418:CDS |
TTGAGGAAAGCACACGATGC+TGG | 0.515289 | 5.1:+68886116 | None:intergenic |
GTTAAACTCGGTTGTGGTGA+AGG | 0.515849 | 5.1:-68893595 | MS.gene99418:intron |
AGAGTCAGTTGATACGCAAC+TGG | 0.517287 | 5.1:+68887929 | None:intergenic |
ATTTGAACATTAAACTGTTG+AGG | 0.518786 | 5.1:+68886157 | None:intergenic |
ACACTACTTTGTAGCATACA+TGG | 0.519645 | 5.1:-68892801 | MS.gene99418:CDS |
GTGAAATTCAGGTGAAACTT+GGG | 0.524542 | 5.1:-68890234 | MS.gene99418:intron |
CTGACTCTACGACCAACGCC+TGG | 0.528138 | 5.1:-68887914 | MS.gene99418:CDS |
CCCTGCTGTGGATTTAGGAC+AGG | 0.528247 | 5.1:-68886729 | MS.gene99418:intron |
TCAATGGTTCATATAATGAA+TGG | 0.528482 | 5.1:-68891889 | MS.gene99418:CDS |
AGAGTGAAACACACATTCCA+GGG | 0.528965 | 5.1:+68892673 | None:intergenic |
TGCTGCTGATGTTGATATGG+AGG | 0.529902 | 5.1:-68892496 | MS.gene99418:CDS |
TGATAAGTATATTGATCTGA+AGG | 0.530273 | 5.1:-68892184 | MS.gene99418:CDS |
CCAGTGACGCCAATGGAGCC+AGG | 0.530970 | 5.1:-68892263 | MS.gene99418:CDS |
TGTCATTGGCAGACGGCACA+TGG | 0.533905 | 5.1:-68886210 | MS.gene99418:CDS |
ATATCCGTTCACGTAGAAGT+TGG | 0.534717 | 5.1:+68891375 | None:intergenic |
CGATTCATGAAAGGTTTGCA+GGG | 0.535623 | 5.1:-68892725 | MS.gene99418:CDS |
AGGGCCCCTGGGGAAGTGCA+GGG | 0.536468 | 5.1:-68888211 | MS.gene99418:CDS |
CTTGAGATATTGGTCAATGC+TGG | 0.536646 | 5.1:-68888362 | MS.gene99418:CDS |
CTCAAAAGTTACCGTTTCTG+AGG | 0.540572 | 5.1:-68892592 | MS.gene99418:CDS |
AGTAATTACAAGAAGGGTCG+GGG | 0.541016 | 5.1:-68890062 | MS.gene99418:CDS |
TGTTGCAGCCACACTTTCAG+TGG | 0.541099 | 5.1:-68888158 | MS.gene99418:CDS |
AAGAGTGTTAAACTCGGTTG+TGG | 0.542468 | 5.1:-68893601 | MS.gene99418:CDS |
ATGAAGCTCCTTTAAACTGG+TGG | 0.542795 | 5.1:+68892308 | None:intergenic |
AGTGTACTAACCATGTTATG+TGG | 0.543298 | 5.1:+68888311 | None:intergenic |
CCGGCAGTAGTTTCAACTAG+AGG | 0.544069 | 5.1:+68891403 | None:intergenic |
GGGTTTCATGCTTCTCAATG+TGG | 0.544526 | 5.1:-68892705 | MS.gene99418:CDS |
TCTACTATAGCAAGATGCCT+TGG | 0.545821 | 5.1:-68890106 | MS.gene99418:CDS |
GCTGCAATATCTTGGTTGAG+AGG | 0.545853 | 5.1:-68887646 | MS.gene99418:CDS |
GAAAAGCTGAAGGCAGATAC+GGG | 0.548213 | 5.1:-68887608 | MS.gene99418:CDS |
GGAGCTGCGCTACAAGCTAC+AGG | 0.550843 | 5.1:-68891202 | MS.gene99418:intron |
GTAAAGACATTCCTAGTGGT+GGG | 0.551345 | 5.1:-68890809 | MS.gene99418:CDS |
TGTAAGCAATTTGGTGGTGA+AGG | 0.551825 | 5.1:+68890930 | None:intergenic |
TCCTTTGGTTGACAGAGTTG+AGG | 0.551997 | 5.1:-68892847 | MS.gene99418:CDS |
TGTTCGAGTAATTACAAGAA+GGG | 0.552792 | 5.1:-68890068 | MS.gene99418:CDS |
TCCCAGTAGATCTGCAATGA+GGG | 0.553628 | 5.1:-68888230 | MS.gene99418:CDS |
GATCTGCAATGAGGGCCCCT+GGG | 0.553728 | 5.1:-68888222 | MS.gene99418:CDS |
ACGGAGTCTCAACCCTGCTG+TGG | 0.554639 | 5.1:-68886741 | MS.gene99418:CDS |
ATAGTAGAATGAGTAAACTC+AGG | 0.554898 | 5.1:+68890121 | None:intergenic |
CAGCCTACAAGCATCTATCA+TGG | 0.555012 | 5.1:+68891624 | None:intergenic |
CCTAGTGGTGGGGAAAACAT+TGG | 0.555557 | 5.1:-68890798 | MS.gene99418:CDS |
ATACAGTGAGCTTGATTCAA+GGG | 0.557138 | 5.1:-68887724 | MS.gene99418:CDS |
CGGCAGTAGTTTCAACTAGA+GGG | 0.557309 | 5.1:+68891404 | None:intergenic |
TTTAATGATTGGCTTTCCAA+CGG | 0.558146 | 5.1:+68891228 | None:intergenic |
TGGTGATATATCAAAAGGAA+TGG | 0.559632 | 5.1:-68890447 | MS.gene99418:CDS |
GGCATTGGAAATAGCAAACA+AGG | 0.561122 | 5.1:-68892756 | MS.gene99418:CDS |
TCTCCAGGTGAAAATTCTGG+TGG | 0.561917 | 5.1:-68891649 | MS.gene99418:CDS |
TGTTACAATACTTCTTGCTG+TGG | 0.562158 | 5.1:-68891914 | MS.gene99418:CDS |
TGAAGCTCCTTTAAACTGGT+GGG | 0.564761 | 5.1:+68892309 | None:intergenic |
ATAACAACAAGTGAAGGCAT+TGG | 0.565209 | 5.1:-68892771 | MS.gene99418:CDS |
GATTGCATCCGATTCATGAA+AGG | 0.565763 | 5.1:-68892734 | MS.gene99418:CDS |
AAGCAGCATTTAAGTATGGA+AGG | 0.566041 | 5.1:+68891686 | None:intergenic |
TGAGGGATAGTGTCTATCGT+AGG | 0.567492 | 5.1:+68886175 | None:intergenic |
CTGGAGAAAAGAAGAAAGCA+AGG | 0.568437 | 5.1:-68892454 | MS.gene99418:CDS |
GTCACATTGAATTGTACTGA+GGG | 0.568848 | 5.1:+68887790 | None:intergenic |
GCCCTCATTGCAGATCTACT+GGG | 0.570896 | 5.1:+68888229 | None:intergenic |
TGCGGCACTGCCACATAACA+TGG | 0.571872 | 5.1:-68888321 | MS.gene99418:intron |
TCCTCAACTCTGTCAACCAA+AGG | 0.571934 | 5.1:+68892846 | None:intergenic |
GGGAACCAAGTCCTTGAAGC+GGG | 0.572505 | 5.1:-68891265 | MS.gene99418:CDS |
ATGTTGGGTTCAAGAATGAT+GGG | 0.575275 | 5.1:-68888403 | MS.gene99418:CDS |
AGTAAAGACATTCCTAGTGG+TGG | 0.575771 | 5.1:-68890810 | MS.gene99418:CDS |
CTTACTCCATATTGAAGGCA+AGG | 0.576357 | 5.1:+68888045 | None:intergenic |
GCCTCTCAAGGAAAAGCTGA+AGG | 0.578146 | 5.1:-68887618 | MS.gene99418:CDS |
TTACTGCGGCACCATAATTG+AGG | 0.580122 | 5.1:+68886996 | None:intergenic |
AGATACGGGCTCTATCAAAT+GGG | 0.581564 | 5.1:-68887594 | MS.gene99418:CDS |
ATACTCCTTATCCTTGCCAG+TGG | 0.582025 | 5.1:+68890882 | None:intergenic |
GAGGGATAGTGTCTATCGTA+GGG | 0.582399 | 5.1:+68886176 | None:intergenic |
GAAGACATAATTTAATGCAT+AGG | 0.582506 | 5.1:+68886061 | None:intergenic |
ATGATCCCTGCACTTCCCCA+GGG | 0.583035 | 5.1:+68888206 | None:intergenic |
GAAGAGATTGCCAGATGTGT+CGG | 0.583193 | 5.1:-68890738 | MS.gene99418:CDS |
TATAACCAGTGCAGCGACAA+AGG | 0.583455 | 5.1:+68892547 | None:intergenic |
ATCTACATCCACTGAAAGTG+TGG | 0.585121 | 5.1:+68888150 | None:intergenic |
ATGTTGATATGGAGGATTTG+GGG | 0.587628 | 5.1:-68892488 | MS.gene99418:CDS |
AATGGTTTGTCATTGGCAGA+CGG | 0.588684 | 5.1:-68886217 | MS.gene99418:CDS |
CGGAATACAGCCAGTGTAGG+TGG | 0.588893 | 5.1:-68891979 | MS.gene99418:CDS |
TGAGCTCTCAAAGATCAGAA+AGG | 0.591501 | 5.1:-68892154 | MS.gene99418:CDS |
GTGGAAATAGATCTACTGAC+AGG | 0.592865 | 5.1:-68886806 | MS.gene99418:CDS |
AATGTTCAAATTCTCAACAG+TGG | 0.594277 | 5.1:-68886145 | MS.gene99418:CDS |
CTCCAGGTGAAAATTCTGGT+GGG | 0.596913 | 5.1:-68891648 | MS.gene99418:CDS |
ATATGAGTAAAGTTGCCTCT+GGG | 0.602295 | 5.1:-68892008 | MS.gene99418:CDS |
TAAAGACATTCCTAGTGGTG+GGG | 0.602301 | 5.1:-68890808 | MS.gene99418:CDS |
TGAGAGGTTAAAGCCTCTCA+AGG | 0.602913 | 5.1:-68887630 | MS.gene99418:CDS |
GGTAATGAATATCACCCCGT+TGG | 0.603364 | 5.1:-68891244 | MS.gene99418:CDS |
CCTCTAGTTGAAACTACTGC+CGG | 0.604455 | 5.1:-68891403 | MS.gene99418:CDS |
TTCAATATCGTAATCGACAA+CGG | 0.605573 | 5.1:+68890559 | None:intergenic |
ATATGATAATGGCTGGAGGA+AGG | 0.605624 | 5.1:-68888448 | MS.gene99418:CDS |
GGAGAAATTGAATTGGGTCA+GGG | 0.607162 | 5.1:-68887848 | MS.gene99418:CDS |
CGTCACATTGAATTGTACTG+AGG | 0.607382 | 5.1:+68887789 | None:intergenic |
TAGTAGAATGAGTAAACTCA+GGG | 0.607660 | 5.1:+68890122 | None:intergenic |
GTTGTGAATAATACTGGTAT+GGG | 0.608344 | 5.1:-68892231 | MS.gene99418:CDS |
AGATCAGAAAGGATCAATCA+GGG | 0.609735 | 5.1:-68892143 | MS.gene99418:CDS |
AACCATGCCAGTGACGCCAA+TGG | 0.611890 | 5.1:-68892270 | MS.gene99418:CDS |
TTCCCAGTAGATCTGCAATG+AGG | 0.611952 | 5.1:-68888231 | MS.gene99418:CDS |
GGTCAATGCTGGTATATATG+TGG | 0.612012 | 5.1:-68888351 | MS.gene99418:CDS |
ATTCGGAATACAGCCAGTGT+AGG | 0.612101 | 5.1:-68891982 | MS.gene99418:CDS |
TGTTCAATAACAACAAGTGA+AGG | 0.612214 | 5.1:-68892777 | MS.gene99418:CDS |
TACAGTGAGCTTGATTCAAG+GGG | 0.613500 | 5.1:-68887723 | MS.gene99418:CDS |
GAAACCAACTTCTACGTGAA+CGG | 0.616275 | 5.1:-68891379 | MS.gene99418:CDS |
AGCCAGCTGCCAAACTTGAA+CGG | 0.616315 | 5.1:+68891446 | None:intergenic |
ATGTTCGAGTAATTACAAGA+AGG | 0.616344 | 5.1:-68890069 | MS.gene99418:CDS |
CAAGCGGTCTAGGAGAAGCT+CGG | 0.616375 | 5.1:+68891716 | None:intergenic |
AAGTATTGTAACAATATCCG+AGG | 0.616761 | 5.1:+68891924 | None:intergenic |
TTCACAGCATGACTCTGATG+TGG | 0.617056 | 5.1:+68887682 | None:intergenic |
GATAAGTATATTGATCTGAA+GGG | 0.620052 | 5.1:-68892183 | MS.gene99418:CDS |
AAGTCTCTTGGACAAAGTAA+GGG | 0.621066 | 5.1:-68887759 | MS.gene99418:CDS |
ACAAAAGAGCAAGTTTCCCT+CGG | 0.621719 | 5.1:-68891941 | MS.gene99418:CDS |
ATCTGCAATGAGGGCCCCTG+GGG | 0.622628 | 5.1:-68888221 | MS.gene99418:CDS |
TAAAACTCAGCCCTGAATTG+CGG | 0.624714 | 5.1:-68890860 | MS.gene99418:CDS |
ATATCATCTATGATTGCGGA+CGG | 0.625796 | 5.1:-68886760 | MS.gene99418:CDS |
ACTGATATCATCTATGATTG+CGG | 0.626310 | 5.1:-68886764 | MS.gene99418:CDS |
CACCTGGAGACACCTCAACA+AGG | 0.629732 | 5.1:+68891662 | None:intergenic |
TATCCTCTGAGAAACACGGC+TGG | 0.630938 | 5.1:-68892338 | MS.gene99418:CDS |
AGCAGCATTTAAGTATGGAA+GGG | 0.632691 | 5.1:+68891687 | None:intergenic |
CCATTCAAGAGTGTTAAACT+CGG | 0.635233 | 5.1:-68893607 | MS.gene99418:CDS |
TTATGGTGCCGCAGTAAGTG+AGG | 0.636346 | 5.1:-68886990 | MS.gene99418:intron |
TTGTGCTGGTGCTCATATCG+AGG | 0.637322 | 5.1:+68892411 | None:intergenic |
AGGCTGAAAAGGCTATTGCA+GGG | 0.638825 | 5.1:-68892572 | MS.gene99418:CDS |
TGTAGGTGGCAATTTGGTGA+TGG | 0.639172 | 5.1:-68891965 | MS.gene99418:CDS |
TGATCCCTGCACTTCCCCAG+GGG | 0.642453 | 5.1:+68888207 | None:intergenic |
GTAATTACAAGAAGGGTCGG+GGG | 0.643064 | 5.1:-68890061 | MS.gene99418:CDS |
GCTCCATGTAAGCAATTTGG+TGG | 0.643256 | 5.1:+68890924 | None:intergenic |
ACACTTTCCAAACTTAATGG+TGG | 0.645084 | 5.1:+68891823 | None:intergenic |
TTCATATCCTCTGAGAAACA+CGG | 0.654169 | 5.1:-68892342 | MS.gene99418:CDS |
AAGCTCGGTAAGTTTCAAAG+TGG | 0.657473 | 5.1:+68891731 | None:intergenic |
TGGGAACCAAGTCCTTGAAG+CGG | 0.657713 | 5.1:-68891266 | MS.gene99418:CDS |
TCTTCAACAGATAAAATAGG+TGG | 0.658425 | 5.1:+68890527 | None:intergenic |
GATTTAGATACATCCTGACA+GGG | 0.659769 | 5.1:+68888480 | None:intergenic |
GTGCCAGCCGTGTTTCTCAG+AGG | 0.661604 | 5.1:+68892335 | None:intergenic |
TCACAAGATTCTATCTGCTG+AGG | 0.661889 | 5.1:-68890414 | MS.gene99418:intron |
TAATGATTGGCTTTCCAACG+GGG | 0.662171 | 5.1:+68891230 | None:intergenic |
TTTCTCTACCCAAAACACGT+TGG | 0.663821 | 5.1:-68890467 | MS.gene99418:CDS |
ACACATTACCTCACTTACTG+CGG | 0.665205 | 5.1:+68886982 | None:intergenic |
GGGTCAGGGTCTCTGGACGA+AGG | 0.666463 | 5.1:-68887834 | MS.gene99418:CDS |
AGTATTGTAACAATATCCGA+GGG | 0.668326 | 5.1:+68891925 | None:intergenic |
CATTACTTTCAGGAATACCA+AGG | 0.671155 | 5.1:+68890089 | None:intergenic |
CAGTGAGCTTGATTCAAGGG+GGG | 0.676154 | 5.1:-68887721 | MS.gene99418:CDS |
GGATATTACAAAGATAACGA+TGG | 0.680269 | 5.1:-68892210 | MS.gene99418:CDS |
TATATATGTGGATATAAGTG+CGG | 0.683802 | 5.1:-68888339 | MS.gene99418:CDS |
ACAGATATGATAATGGCTGG+AGG | 0.683979 | 5.1:-68888452 | MS.gene99418:CDS |
TCAAGTAAAGACATTCCTAG+TGG | 0.691390 | 5.1:-68890813 | MS.gene99418:CDS |
ACAGTGAGCTTGATTCAAGG+GGG | 0.707458 | 5.1:-68887722 | MS.gene99418:CDS |
CCTGTCCTAAATCCACAGCA+GGG | 0.710740 | 5.1:+68886729 | None:intergenic |
GAGTGAAACACACATTCCAG+GGG | 0.739085 | 5.1:+68892674 | None:intergenic |
TATGGAAGGGCATTTCCAAG+CGG | 0.740649 | 5.1:+68891700 | None:intergenic |
TGTATTCCGAATAAACCCAG+AGG | 0.770513 | 5.1:+68891993 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 68886072 | 68893761 | 68886072 | ID=MS.gene99418 |
chr5.1 | mRNA | 68886072 | 68893761 | 68886072 | ID=MS.gene99418.t1;Parent=MS.gene99418 |
chr5.1 | exon | 68893596 | 68893761 | 68893596 | ID=MS.gene99418.t1.exon1;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68893596 | 68893761 | 68893596 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68891203 | 68892909 | 68891203 | ID=MS.gene99418.t1.exon2;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68891203 | 68892909 | 68891203 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68890719 | 68890978 | 68890719 | ID=MS.gene99418.t1.exon3;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68890719 | 68890978 | 68890719 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68890415 | 68890624 | 68890415 | ID=MS.gene99418.t1.exon4;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68890415 | 68890624 | 68890415 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68890027 | 68890245 | 68890027 | ID=MS.gene99418.t1.exon5;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68890027 | 68890245 | 68890027 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68888322 | 68888543 | 68888322 | ID=MS.gene99418.t1.exon6;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68888322 | 68888543 | 68888322 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68887577 | 68888269 | 68887577 | ID=MS.gene99418.t1.exon7;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68887577 | 68888269 | 68887577 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68886991 | 68887086 | 68886991 | ID=MS.gene99418.t1.exon8;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68886991 | 68887086 | 68886991 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68886730 | 68886828 | 68886730 | ID=MS.gene99418.t1.exon9;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68886730 | 68886828 | 68886730 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
chr5.1 | exon | 68886072 | 68886302 | 68886072 | ID=MS.gene99418.t1.exon10;Parent=MS.gene99418.t1 |
chr5.1 | CDS | 68886072 | 68886302 | 68886072 | ID=cds.MS.gene99418.t1;Parent=MS.gene99418.t1 |
Gene Sequence |
Protein sequence |