Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99436.t1 | XP_013454888.1 | 90.9 | 198 | 14 | 1 | 1 | 198 | 1 | 194 | 4.20E-71 | 277.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99436.t1 | Q8LDV3 | 73.0 | 37 | 10 | 0 | 69 | 105 | 65 | 101 | 4.3e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99436.t1 | A0A072UHP4 | 90.9 | 198 | 14 | 1 | 1 | 198 | 1 | 194 | 3.0e-71 | 277.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05883 | MS.gene99436 | 0.808474 | 3.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99436.t1 | MTR_4g017880 | 91.919 | 198 | 12 | 1 | 1 | 198 | 1 | 194 | 4.98e-116 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99436.t1 | AT4G13200 | 73.750 | 80 | 19 | 1 | 69 | 148 | 65 | 142 | 7.81e-35 | 122 |
Find 50 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATGTTGGAAAAGGTTT+TGG | 0.267900 | 4.2:-83805117 | None:intergenic |
| AAAACAAGTACAGGAATTTC+AGG | 0.306473 | 4.2:+83807082 | MS.gene99436:CDS |
| AGTGGGCTCAATGTATATTT+CGG | 0.360139 | 4.2:-83808123 | None:intergenic |
| GTAGACTGTACGGAAGTAAC+TGG | 0.423294 | 4.2:-83808092 | None:intergenic |
| GAAGCGAAGGTTGTTGGAGA+TGG | 0.430525 | 4.2:-83805083 | None:intergenic |
| AGATGGTGAAGGGGAGAGAC+TGG | 0.433088 | 4.2:-83805066 | None:intergenic |
| CTAGGAGAAGCGAAGGTTGT+TGG | 0.443557 | 4.2:-83805089 | None:intergenic |
| AACTTTCCAGCTGCAACAAA+AGG | 0.444492 | 4.2:+83805171 | MS.gene99436:CDS |
| GCTGGAAAGTTGAATGCATA+TGG | 0.471661 | 4.2:-83805159 | None:intergenic |
| GTGGTGGATACATCTACTTC+AGG | 0.473097 | 4.2:+83808047 | MS.gene99436:CDS |
| AGAAGAAGGAACGAGGATGT+TGG | 0.477615 | 4.2:-83805129 | None:intergenic |
| CAACAACCTTCGCTTCTCCT+AGG | 0.487374 | 4.2:+83805090 | MS.gene99436:CDS |
| AAGTTGAATGCATATGGGTT+TGG | 0.500968 | 4.2:-83805153 | None:intergenic |
| TATCACTTATGAACTTAATG+TGG | 0.501100 | 4.2:-83808159 | None:intergenic |
| AGGAACGAGGATGTTGGAAA+AGG | 0.507028 | 4.2:-83805123 | None:intergenic |
| TCTTATACAGGAAGAAGTGT+TGG | 0.510600 | 4.2:+83807929 | MS.gene99436:intron |
| AGAGGCACAACCGCGGGGAC+TGG | 0.510821 | 4.2:+83807995 | MS.gene99436:CDS |
| AGCTACAGAGGCACAACCGC+GGG | 0.512026 | 4.2:+83807989 | MS.gene99436:CDS |
| ACAATACCTTCTTCCCTGGT+GGG | 0.513213 | 4.2:+83805222 | MS.gene99436:CDS |
| AACAATACCTTCTTCCCTGG+TGG | 0.526584 | 4.2:+83805221 | MS.gene99436:CDS |
| ATCACTTATGAACTTAATGT+GGG | 0.538123 | 4.2:-83808158 | None:intergenic |
| CTGGAAAGTTGAATGCATAT+GGG | 0.538772 | 4.2:-83805158 | None:intergenic |
| AAGGTTGTTGGAGATGGTGA+AGG | 0.541919 | 4.2:-83805077 | None:intergenic |
| GGTGAGCTCTTGAGTACAGT+TGG | 0.546113 | 4.2:+83807038 | MS.gene99436:CDS |
| ATAAAATAGTTTACCAGAGG+GGG | 0.550373 | 4.2:-83805246 | None:intergenic |
| GAGCGCATTGAGTCGACACT+TGG | 0.551517 | 4.2:+83807017 | MS.gene99436:CDS |
| GTGGGATCCTCCCCTTCAGT+GGG | 0.555642 | 4.2:-83808140 | None:intergenic |
| AGGTTGTTGGAGATGGTGAA+GGG | 0.556621 | 4.2:-83805076 | None:intergenic |
| TGTGGGATCCTCCCCTTCAG+TGG | 0.562869 | 4.2:-83808141 | None:intergenic |
| AATAAAATAGTTTACCAGAG+GGG | 0.576394 | 4.2:-83805247 | None:intergenic |
| TGTAACAATACCTTCTTCCC+TGG | 0.577863 | 4.2:+83805218 | MS.gene99436:CDS |
| ATATACATTGAGCCCACTGA+AGG | 0.585974 | 4.2:+83808128 | MS.gene99436:CDS |
| TTCTGTAGAAGCTGTAGACT+CGG | 0.589146 | 4.2:-83808021 | None:intergenic |
| CATTGAGCCCACTGAAGGGG+AGG | 0.593326 | 4.2:+83808133 | MS.gene99436:CDS |
| CATATGGGTTTGGAAGAAGA+AGG | 0.597786 | 4.2:-83805143 | None:intergenic |
| GGTTGTTGGAGATGGTGAAG+GGG | 0.598990 | 4.2:-83805075 | None:intergenic |
| GGATGCATCAGTAGACTGTA+CGG | 0.608134 | 4.2:-83808102 | None:intergenic |
| TATACATTGAGCCCACTGAA+GGG | 0.616249 | 4.2:+83808129 | MS.gene99436:CDS |
| GGAGAACCTAGGAGAAGCGA+AGG | 0.618276 | 4.2:-83805096 | None:intergenic |
| TACAGCTTCTACAGAAGTCG+TGG | 0.624697 | 4.2:+83808028 | MS.gene99436:CDS |
| ATACATTGAGCCCACTGAAG+GGG | 0.634389 | 4.2:+83808130 | MS.gene99436:CDS |
| CTGTACGGAAGTAACTGGAT+CGG | 0.637727 | 4.2:-83808087 | None:intergenic |
| AGCTTCTACAGAAGTCGTGG+TGG | 0.651039 | 4.2:+83808031 | MS.gene99436:CDS |
| AGCAGCGCGTGAAGCTACAG+AGG | 0.653253 | 4.2:+83807977 | MS.gene99436:CDS |
| ATTGTTACAGCGAAGTCCAG+TGG | 0.665812 | 4.2:-83805204 | None:intergenic |
| GTTTGGAAGAAGAAGGAACG+AGG | 0.668466 | 4.2:-83805136 | None:intergenic |
| TAAAATAGTTTACCAGAGGG+GGG | 0.670309 | 4.2:-83805245 | None:intergenic |
| AAGCTACAGAGGCACAACCG+CGG | 0.698235 | 4.2:+83807988 | MS.gene99436:CDS |
| GACTCGGAAACCAGTCCCCG+CGG | 0.698498 | 4.2:-83808005 | None:intergenic |
| GCTACAGAGGCACAACCGCG+GGG | 0.709325 | 4.2:+83807990 | MS.gene99436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTATAATTTGTTTT+GGG | + | chr4.2:83805409-83805428 | MS.gene99436:intron | 10.0% |
| !!! | TTTTTTTCTATAATTTGTTT+TGG | + | chr4.2:83805408-83805427 | MS.gene99436:intron | 10.0% |
| !! | TTGTTAAACAAAAAATTAAG+AGG | + | chr4.2:83806474-83806493 | MS.gene99436:intron | 15.0% |
| !! | TTTCTCTTAAAATTTAATAG+CGG | + | chr4.2:83806642-83806661 | MS.gene99436:intron | 15.0% |
| !!! | AAAAAAAAAGTTCCAAATTT+TGG | + | chr4.2:83807547-83807566 | MS.gene99436:intron | 15.0% |
| !!! | AGGATATATAGTTTTTTTAA+AGG | - | chr4.2:83806865-83806884 | None:intergenic | 15.0% |
| !!! | GGATATATAGTTTTTTTAAA+GGG | - | chr4.2:83806864-83806883 | None:intergenic | 15.0% |
| !!! | TCTTTGTTTTAAAAAAAAGA+GGG | - | chr4.2:83806610-83806629 | None:intergenic | 15.0% |
| !!! | TTTTTCTATAATTTGTTTTG+GGG | + | chr4.2:83805410-83805429 | MS.gene99436:intron | 15.0% |
| !! | AAAATTAAGAGGATAACAAA+AGG | + | chr4.2:83806485-83806504 | MS.gene99436:intron | 20.0% |
| !! | AAATAAAATAGTTTACCAGA+GGG | - | chr4.2:83805251-83805270 | None:intergenic | 20.0% |
| !! | AGTAAACAACAATATTGTTT+AGG | - | chr4.2:83807210-83807229 | None:intergenic | 20.0% |
| !! | ATCAAAGCAATAAATTTAGT+CGG | - | chr4.2:83805936-83805955 | None:intergenic | 20.0% |
| !! | CGAAATTATAATTCTTATAC+AGG | + | chr4.2:83807917-83807936 | MS.gene99436:intron | 20.0% |
| !! | TAAATTATGTACCATTAGAT+TGG | - | chr4.2:83807844-83807863 | None:intergenic | 20.0% |
| !! | TACAAAAAGTTATGAAATAG+CGG | - | chr4.2:83806252-83806271 | None:intergenic | 20.0% |
| !! | TTTAATGTAATCATATGTGA+CGG | + | chr4.2:83805690-83805709 | MS.gene99436:intron | 20.0% |
| !!! | AAAATGTTGTTACTTGTATT+GGG | + | chr4.2:83807504-83807523 | MS.gene99436:intron | 20.0% |
| !!! | CAGTTTTAATCTTAATCAAA+GGG | - | chr4.2:83805913-83805932 | None:intergenic | 20.0% |
| !!! | GAATGGTATGTTTTAATTTT+AGG | + | chr4.2:83805472-83805491 | MS.gene99436:intron | 20.0% |
| !!! | GTCTTTGTTTTAAAAAAAAG+AGG | - | chr4.2:83806611-83806630 | None:intergenic | 20.0% |
| !!! | TAAATTTTGGAAAAACCAAA+TGG | - | chr4.2:83806082-83806101 | None:intergenic | 20.0% |
| !!! | TATCCTTAGATTTTTGTATT+AGG | + | chr4.2:83806879-83806898 | MS.gene99436:intron | 20.0% |
| !!! | TTTTGCTTTACTTTAAAGTT+TGG | + | chr4.2:83805562-83805581 | MS.gene99436:intron | 20.0% |
| ! | AACTTGAACAAAAAAGTAAC+AGG | + | chr4.2:83806435-83806454 | MS.gene99436:intron | 25.0% |
| ! | AATAAAATAGTTTACCAGAG+GGG | - | chr4.2:83805250-83805269 | None:intergenic | 25.0% |
| ! | ATACTAATAATAGCTGGTAT+AGG | + | chr4.2:83807452-83807471 | MS.gene99436:intron | 25.0% |
| ! | ATCAGTTATGTATTCCAAAA+TGG | + | chr4.2:83807602-83807621 | MS.gene99436:intron | 25.0% |
| ! | ATTCAATCTGTTATCTCATA+TGG | + | chr4.2:83807167-83807186 | MS.gene99436:intron | 25.0% |
| ! | CATGTATGTAATTACAAGTT+TGG | - | chr4.2:83806142-83806161 | None:intergenic | 25.0% |
| ! | CCACAAAAACAACAAAAATA+TGG | + | chr4.2:83806305-83806324 | MS.gene99436:intron | 25.0% |
| ! | CTCAAAAGGTTATATAAAGA+TGG | + | chr4.2:83805834-83805853 | MS.gene99436:intron | 25.0% |
| ! | GAAATAAAATAGTTTACCAG+AGG | - | chr4.2:83805252-83805271 | None:intergenic | 25.0% |
| ! | GTAAACATAGTAGTTAATAG+CGG | + | chr4.2:83806165-83806184 | MS.gene99436:intron | 25.0% |
| ! | GTACCTAATACAAAAATCTA+AGG | - | chr4.2:83806885-83806904 | None:intergenic | 25.0% |
| ! | TAGGATGAATAATTGAATTC+CGG | + | chr4.2:83805491-83805510 | MS.gene99436:intron | 25.0% |
| ! | TCTTCATAACTACCAAAATT+TGG | - | chr4.2:83807562-83807581 | None:intergenic | 25.0% |
| ! | TTCAATCTGTTATCTCATAT+GGG | + | chr4.2:83807168-83807187 | MS.gene99436:intron | 25.0% |
| ! | TTGCTGCAAAACATATTATT+GGG | + | chr4.2:83807664-83807683 | MS.gene99436:intron | 25.0% |
| ! | TTTGCTGCAAAACATATTAT+TGG | + | chr4.2:83807663-83807682 | MS.gene99436:intron | 25.0% |
| !! | AAATGTTGTTACTTGTATTG+GGG | + | chr4.2:83807505-83807524 | MS.gene99436:intron | 25.0% |
| !! | AATTTAAAATGACCGCTTAT+GGG | + | chr4.2:83807858-83807877 | MS.gene99436:intron | 25.0% |
| !! | ATTATTTCACATTTGCTGAA+TGG | + | chr4.2:83805455-83805474 | MS.gene99436:intron | 25.0% |
| !! | ATTGACTCAGAAATTCAAAT+TGG | - | chr4.2:83807642-83807661 | None:intergenic | 25.0% |
| !! | ATTTATTGCTTTGATAACCA+AGG | + | chr4.2:83805941-83805960 | MS.gene99436:intron | 25.0% |
| !! | GAAAATGTTGTTACTTGTAT+TGG | + | chr4.2:83807503-83807522 | MS.gene99436:intron | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | + | chr4.2:83806349-83806368 | MS.gene99436:intron | 25.0% |
| !! | TAATTTAAAATGACCGCTTA+TGG | + | chr4.2:83807857-83807876 | MS.gene99436:intron | 25.0% |
| !! | TATCAGTCATCACTAAATTT+TGG | - | chr4.2:83806095-83806114 | None:intergenic | 25.0% |
| !! | TGTTTACTGACTATATTCAT+TGG | + | chr4.2:83807222-83807241 | MS.gene99436:intron | 25.0% |
| !!! | CCATATTTTTGTTGTTTTTG+TGG | - | chr4.2:83806308-83806327 | None:intergenic | 25.0% |
| !!! | CTTTAAAGTTTGGTTTTTTC+CGG | + | chr4.2:83805572-83805591 | MS.gene99436:intron | 25.0% |
| !!! | GCAGTTTTAATCTTAATCAA+AGG | - | chr4.2:83805914-83805933 | None:intergenic | 25.0% |
| !!! | TACTTTTCATTTAGCTCAAA+AGG | + | chr4.2:83805820-83805839 | MS.gene99436:intron | 25.0% |
| AAAACAAGTACAGGAATTTC+AGG | + | chr4.2:83807082-83807101 | MS.gene99436:CDS | 30.0% | |
| AGATTCATAATGATTGAGAG+AGG | + | chr4.2:83805774-83805793 | MS.gene99436:intron | 30.0% | |
| ATAAAATAGTTTACCAGAGG+GGG | - | chr4.2:83805249-83805268 | None:intergenic | 30.0% | |
| ATAAATTCCCAATAAGTTGC+CGG | - | chr4.2:83805513-83805532 | None:intergenic | 30.0% | |
| ATGTTACAATAATGCTACCT+TGG | - | chr4.2:83805961-83805980 | None:intergenic | 30.0% | |
| CATCAAAATCAACAAGAGAA+AGG | - | chr4.2:83805274-83805293 | None:intergenic | 30.0% | |
| CATGATTCATGCATATCAAA+TGG | + | chr4.2:83807713-83807732 | MS.gene99436:intron | 30.0% | |
| CTCAGAAATTCAAATTGGAT+TGG | - | chr4.2:83807637-83807656 | None:intergenic | 30.0% | |
| CTCTCAATCATTATGAATCT+AGG | - | chr4.2:83805774-83805793 | None:intergenic | 30.0% | |
| GCAAAACAAATCCTTAAGAA+TGG | - | chr4.2:83806120-83806139 | None:intergenic | 30.0% | |
| GTATTCCAAAATGGTACATT+TGG | + | chr4.2:83807611-83807630 | MS.gene99436:intron | 30.0% | |
| TACAAACTATCTTCAAGTAG+AGG | + | chr4.2:83807288-83807307 | MS.gene99436:intron | 30.0% | |
| TCGTAAATATGTGGTTTACA+CGG | + | chr4.2:83806827-83806846 | MS.gene99436:intron | 30.0% | |
| TGAAACTGTAGTCTATAGTT+GGG | + | chr4.2:83807397-83807416 | MS.gene99436:intron | 30.0% | |
| TGAACAACAAAAACAAGTAC+AGG | + | chr4.2:83807073-83807092 | MS.gene99436:CDS | 30.0% | |
| TGACTGATAATCCATTCTTA+AGG | + | chr4.2:83806106-83806125 | MS.gene99436:intron | 30.0% | |
| TTGAAACTGTAGTCTATAGT+TGG | + | chr4.2:83807396-83807415 | MS.gene99436:intron | 30.0% | |
| TTGAAGTATGTGAATCATGT+AGG | + | chr4.2:83806921-83806940 | MS.gene99436:intron | 30.0% | |
| ! | AATGTTGTTACTTGTATTGG+GGG | + | chr4.2:83807506-83807525 | MS.gene99436:intron | 30.0% |
| ! | TGGGCCATAAAAGTATATAT+CGG | + | chr4.2:83807683-83807702 | MS.gene99436:intron | 30.0% |
| ! | TTCAGGTAAGGATTTTCAAT+TGG | + | chr4.2:83807099-83807118 | MS.gene99436:intron | 30.0% |
| !! | TGCACCGATATATACTTTTA+TGG | - | chr4.2:83807690-83807709 | None:intergenic | 30.0% |
| !!! | AGTCTGGTTTTTAAACCATT+TGG | + | chr4.2:83806064-83806083 | MS.gene99436:intron | 30.0% |
| !!! | TGCTTTTTCCTTTGCTTTTT+TGG | - | chr4.2:83807961-83807980 | None:intergenic | 30.0% |
| AAGTTGAATGCATATGGGTT+TGG | - | chr4.2:83805156-83805175 | None:intergenic | 35.0% | |
| ATCTAACATAGTCCCATAAG+CGG | - | chr4.2:83807873-83807892 | None:intergenic | 35.0% | |
| ATTGAATTCCGGCAACTTAT+TGG | + | chr4.2:83805502-83805521 | MS.gene99436:intron | 35.0% | |
| ATTGTGTTGTGCTGGATTTA+TGG | + | chr4.2:83807123-83807142 | MS.gene99436:intron | 35.0% | |
| CTACTATGCTCGTAAATATG+TGG | + | chr4.2:83806818-83806837 | MS.gene99436:intron | 35.0% | |
| CTGGAAAGTTGAATGCATAT+GGG | - | chr4.2:83805161-83805180 | None:intergenic | 35.0% | |
| GACACAAAAATGACACTTGT+CGG | - | chr4.2:83807785-83807804 | None:intergenic | 35.0% | |
| GGAGAATATTCTAACAGACT+TGG | + | chr4.2:83805855-83805874 | MS.gene99436:intron | 35.0% | |
| GTGTCTGTATACCAATCTAA+TGG | + | chr4.2:83807830-83807849 | MS.gene99436:intron | 35.0% | |
| GTTGGACGTTAATGTTCAAT+CGG | + | chr4.2:83807427-83807446 | MS.gene99436:intron | 35.0% | |
| GTTTAAAAACCAGACTGAAC+TGG | - | chr4.2:83806060-83806079 | None:intergenic | 35.0% | |
| TAAAATAGTTTACCAGAGGG+GGG | - | chr4.2:83805248-83805267 | None:intergenic | 35.0% | |
| TAAAGTTGAACAACAACAGC+AGG | - | chr4.2:83807258-83807277 | None:intergenic | 35.0% | |
| TCGGCTATACTAATAATAGC+TGG | + | chr4.2:83807446-83807465 | MS.gene99436:intron | 35.0% | |
| TGCAAAACACAAAACGCAAA+AGG | - | chr4.2:83806511-83806530 | None:intergenic | 35.0% | |
| TGTACAAACAGAAACAGAGA+GGG | + | chr4.2:83806378-83806397 | MS.gene99436:intron | 35.0% | |
| TTGAATTCCGGCAACTTATT+GGG | + | chr4.2:83805503-83805522 | MS.gene99436:intron | 35.0% | |
| TTGTACAAACAGAAACAGAG+AGG | + | chr4.2:83806377-83806396 | MS.gene99436:intron | 35.0% | |
| ! | AAGTACAGGAATTTCAGGTA+AGG | + | chr4.2:83807087-83807106 | MS.gene99436:intron | 35.0% |
| ! | AGAGAGAAGCTGAACTTTTT+AGG | + | chr4.2:83806561-83806580 | MS.gene99436:intron | 35.0% |
| ! | AGTGGGCTCAATGTATATTT+CGG | - | chr4.2:83808126-83808145 | None:intergenic | 35.0% |
| ! | ATGTTGTTACTTGTATTGGG+GGG | + | chr4.2:83807507-83807526 | MS.gene99436:intron | 35.0% |
| ! | ATTGGCCAAATGTACCATTT+TGG | - | chr4.2:83807619-83807638 | None:intergenic | 35.0% |
| ! | TATCCCGCTATAGCATTTTT+GGG | - | chr4.2:83806213-83806232 | None:intergenic | 35.0% |
| ! | TCTTATACAGGAAGAAGTGT+TGG | + | chr4.2:83807929-83807948 | MS.gene99436:intron | 35.0% |
| !! | GTTCTGGATGCATTTTTCTT+AGG | + | chr4.2:83806969-83806988 | MS.gene99436:CDS | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr4.2:83806172-83806191 | MS.gene99436:intron | 35.0% |
| !!! | CGGTGTTTTTAAAACGAAAC+CGG | + | chr4.2:83805592-83805611 | MS.gene99436:intron | 35.0% |
| !!! | CGGTTTCGTTTTAAAAACAC+CGG | - | chr4.2:83805594-83805613 | None:intergenic | 35.0% |
| !!! | CTATAATTTGTTTTGGGGTG+TGG | + | chr4.2:83805415-83805434 | MS.gene99436:intron | 35.0% |
| AAACACATACTCCTCGGATT+AGG | - | chr4.2:83805751-83805770 | None:intergenic | 40.0% | |
| AACGAAACCGGAAATCAAAC+CGG | + | chr4.2:83805604-83805623 | MS.gene99436:intron | 40.0% | |
| AACTTTCCAGCTGCAACAAA+AGG | + | chr4.2:83805171-83805190 | MS.gene99436:CDS | 40.0% | |
| ACGAGCATAGTAGTCAATAG+CGG | - | chr4.2:83806811-83806830 | None:intergenic | 40.0% | |
| ATATACATTGAGCCCACTGA+AGG | + | chr4.2:83808128-83808147 | MS.gene99436:CDS | 40.0% | |
| CATATGGGTTTGGAAGAAGA+AGG | - | chr4.2:83805146-83805165 | None:intergenic | 40.0% | |
| GACCAATTTGCCAATTGGTT+TGG | - | chr4.2:83806019-83806038 | None:intergenic | 40.0% | |
| GCTGGAAAGTTGAATGCATA+TGG | - | chr4.2:83805162-83805181 | None:intergenic | 40.0% | |
| TAAAAACCAGACTGAACTGG+TGG | - | chr4.2:83806057-83806076 | None:intergenic | 40.0% | |
| TAGCAGCAGCAAAAATGTTC+TGG | + | chr4.2:83806953-83806972 | MS.gene99436:CDS | 40.0% | |
| TAGTCTATAGTTGGGCACTT+GGG | + | chr4.2:83807405-83807424 | MS.gene99436:intron | 40.0% | |
| TATACATTGAGCCCACTGAA+GGG | + | chr4.2:83808129-83808148 | MS.gene99436:CDS | 40.0% | |
| TATGTGAATCATGTAGGCGA+TGG | + | chr4.2:83806927-83806946 | MS.gene99436:intron | 40.0% | |
| TCTAGGAAACACATACTCCT+CGG | - | chr4.2:83805757-83805776 | None:intergenic | 40.0% | |
| TCTTCAAGTAGAGGCTATAG+TGG | + | chr4.2:83807297-83807316 | MS.gene99436:intron | 40.0% | |
| TGTAACAATACCTTCTTCCC+TGG | + | chr4.2:83805218-83805237 | MS.gene99436:CDS | 40.0% | |
| TTCTGTAGAAGCTGTAGACT+CGG | - | chr4.2:83808024-83808043 | None:intergenic | 40.0% | |
| ! | AAAACTCCTTTTGTTGCAGC+TGG | - | chr4.2:83805180-83805199 | None:intergenic | 40.0% |
| ! | AAAAGGAGTTTTCAGACCAC+TGG | + | chr4.2:83805188-83805207 | MS.gene99436:CDS | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | - | chr4.2:83806212-83806231 | None:intergenic | 40.0% |
| ! | ATCTCATATGGGTTTGCTTC+AGG | + | chr4.2:83807179-83807198 | MS.gene99436:intron | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | - | chr4.2:83806214-83806233 | None:intergenic | 40.0% |
| ! | GAGGATGTTGGAAAAGGTTT+TGG | - | chr4.2:83805120-83805139 | None:intergenic | 40.0% |
| ! | TCTCATATGGGTTTGCTTCA+GGG | + | chr4.2:83807180-83807199 | MS.gene99436:intron | 40.0% |
| ! | TTCTAACAGACTTGGTCACT+TGG | + | chr4.2:83805863-83805882 | MS.gene99436:intron | 40.0% |
| ! | TTTTGTGGACAACATAGCCA+TGG | - | chr4.2:83806293-83806312 | None:intergenic | 40.0% |
| !! | GCTTGAATCTGAAGTGTTGA+TGG | - | chr4.2:83807751-83807770 | None:intergenic | 40.0% |
| !!! | AATTTGTTTTGGGGTGTGGT+GGG | + | chr4.2:83805419-83805438 | MS.gene99436:intron | 40.0% |
| !!! | GAAAAGGTTTTGGAGAACCT+AGG | - | chr4.2:83805110-83805129 | None:intergenic | 40.0% |
| !!! | TAATTTGTTTTGGGGTGTGG+TGG | + | chr4.2:83805418-83805437 | MS.gene99436:intron | 40.0% |
| AACAATACCTTCTTCCCTGG+TGG | + | chr4.2:83805221-83805240 | MS.gene99436:CDS | 45.0% | |
| AAGGTTGTTGGAGATGGTGA+AGG | - | chr4.2:83805080-83805099 | None:intergenic | 45.0% | |
| ACAATACCTTCTTCCCTGGT+GGG | + | chr4.2:83805222-83805241 | MS.gene99436:CDS | 45.0% | |
| ACCAGACTGTGTTACAAGCA+CGG | + | chr4.2:83805993-83806012 | MS.gene99436:intron | 45.0% | |
| AGAAGAAGGAACGAGGATGT+TGG | - | chr4.2:83805132-83805151 | None:intergenic | 45.0% | |
| AGAGAGGGCAGAATGAAGTT+TGG | + | chr4.2:83806393-83806412 | MS.gene99436:intron | 45.0% | |
| AGGAACGAGGATGTTGGAAA+AGG | - | chr4.2:83805126-83805145 | None:intergenic | 45.0% | |
| AGGTTGTTGGAGATGGTGAA+GGG | - | chr4.2:83805079-83805098 | None:intergenic | 45.0% | |
| ATACATTGAGCCCACTGAAG+GGG | + | chr4.2:83808130-83808149 | MS.gene99436:CDS | 45.0% | |
| ATTGTTACAGCGAAGTCCAG+TGG | - | chr4.2:83805207-83805226 | None:intergenic | 45.0% | |
| CAATTGGCATTGTGTTGTGC+TGG | + | chr4.2:83807115-83807134 | MS.gene99436:intron | 45.0% | |
| CGACCCCAAAAATGCTATAG+CGG | + | chr4.2:83806206-83806225 | MS.gene99436:intron | 45.0% | |
| CTGTACGGAAGTAACTGGAT+CGG | - | chr4.2:83808090-83808109 | None:intergenic | 45.0% | |
| GAACGGACCAATTTGCCAAT+TGG | - | chr4.2:83806024-83806043 | None:intergenic | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | + | chr4.2:83806207-83806226 | MS.gene99436:intron | 45.0% | |
| GATTAGGCATGTTCTGGTGT+CGG | - | chr4.2:83805735-83805754 | None:intergenic | 45.0% | |
| GGACAGAGCCAAAAAAGCAA+AGG | + | chr4.2:83807950-83807969 | MS.gene99436:CDS | 45.0% | |
| GGATGCATCAGTAGACTGTA+CGG | - | chr4.2:83808105-83808124 | None:intergenic | 45.0% | |
| GGCCAAACCAATTGGCAAAT+TGG | + | chr4.2:83806014-83806033 | MS.gene99436:intron | 45.0% | |
| GGGGGGTTGTCAAATTATCT+AGG | + | chr4.2:83807524-83807543 | MS.gene99436:intron | 45.0% | |
| GTAGACTGTACGGAAGTAAC+TGG | - | chr4.2:83808095-83808114 | None:intergenic | 45.0% | |
| GTAGTCTATAGTTGGGCACT+TGG | + | chr4.2:83807404-83807423 | MS.gene99436:intron | 45.0% | |
| GTTTGGAAGAAGAAGGAACG+AGG | - | chr4.2:83805139-83805158 | None:intergenic | 45.0% | |
| TACAGCTTCTACAGAAGTCG+TGG | + | chr4.2:83808028-83808047 | MS.gene99436:CDS | 45.0% | |
| TTGAATCCACCAGTTCAGTC+TGG | + | chr4.2:83806048-83806067 | MS.gene99436:intron | 45.0% | |
| !! | GCTAGAGCATTGTAGCGTTT+AGG | + | chr4.2:83807321-83807340 | MS.gene99436:intron | 45.0% |
| !! | GTGGTGGATACATCTACTTC+AGG | + | chr4.2:83808047-83808066 | MS.gene99436:CDS | 45.0% |
| !! | TAGCTCACCGGTTTGATTTC+CGG | - | chr4.2:83805614-83805633 | None:intergenic | 45.0% |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | - | chr4.2:83806208-83806227 | None:intergenic | 45.0% |
| AACATAGCCATGGCAGCATC+AGG | - | chr4.2:83806283-83806302 | None:intergenic | 50.0% | |
| AACCGGTGAGCTATGAAGCA+CGG | + | chr4.2:83805621-83805640 | MS.gene99436:intron | 50.0% | |
| ACAAGCACGGCCAAACCAAT+TGG | + | chr4.2:83806006-83806025 | MS.gene99436:intron | 50.0% | |
| ACCAGAACATGCCTAATCCG+AGG | + | chr4.2:83805737-83805756 | MS.gene99436:intron | 50.0% | |
| AGCTTCTACAGAAGTCGTGG+TGG | + | chr4.2:83808031-83808050 | MS.gene99436:CDS | 50.0% | |
| CAACAACCTTCGCTTCTCCT+AGG | + | chr4.2:83805090-83805109 | MS.gene99436:CDS | 50.0% | |
| CTAGGAGAAGCGAAGGTTGT+TGG | - | chr4.2:83805092-83805111 | None:intergenic | 50.0% | |
| CTATAGTTGGGCACTTGGGT+TGG | + | chr4.2:83807409-83807428 | MS.gene99436:intron | 50.0% | |
| GAAGCGAAGGTTGTTGGAGA+TGG | - | chr4.2:83805086-83805105 | None:intergenic | 50.0% | |
| GGTGAGCTCTTGAGTACAGT+TGG | + | chr4.2:83807038-83807057 | MS.gene99436:CDS | 50.0% | |
| GGTTGTTGGAGATGGTGAAG+GGG | - | chr4.2:83805078-83805097 | None:intergenic | 50.0% | |
| GTGAGATAGCGCTGCTATAG+CGG | - | chr4.2:83806712-83806731 | None:intergenic | 50.0% | |
| TATCTCACACCGCAACGCTA+TGG | + | chr4.2:83806724-83806743 | MS.gene99436:intron | 50.0% | |
| TTGGCAAATTGGTCCGTTCC+TGG | + | chr4.2:83806025-83806044 | MS.gene99436:intron | 50.0% | |
| ! | TCCTCGGATTAGGCATGTTC+TGG | - | chr4.2:83805741-83805760 | None:intergenic | 50.0% |
| !! | CTGAACTGGTGGATTCAACC+AGG | - | chr4.2:83806046-83806065 | None:intergenic | 50.0% |
| !! | CTGGTGGATTCAACCAGGAA+CGG | - | chr4.2:83806041-83806060 | None:intergenic | 50.0% |
| ACCAGAACCTGATGCTGCCA+TGG | + | chr4.2:83806273-83806292 | MS.gene99436:intron | 55.0% | |
| AGATGGTGAAGGGGAGAGAC+TGG | - | chr4.2:83805069-83805088 | None:intergenic | 55.0% | |
| CGCAACAAGCCATAGCGTTG+CGG | - | chr4.2:83806736-83806755 | None:intergenic | 55.0% | |
| GAGCGCATTGAGTCGACACT+TGG | + | chr4.2:83807017-83807036 | MS.gene99436:CDS | 55.0% | |
| GAGCTATGAAGCACGGACAC+TGG | + | chr4.2:83805628-83805647 | MS.gene99436:intron | 55.0% | |
| GCCGTGCTTGTAACACAGTC+TGG | - | chr4.2:83805997-83806016 | None:intergenic | 55.0% | |
| GGAGAACCTAGGAGAAGCGA+AGG | - | chr4.2:83805099-83805118 | None:intergenic | 55.0% | |
| GGTCAATAGCGCCGCTATAG+CGG | - | chr4.2:83806790-83806809 | None:intergenic | 55.0% | |
| GTCCGTGCTTCATAGCTCAC+CGG | - | chr4.2:83805626-83805645 | None:intergenic | 55.0% | |
| ! | AACGCTGCGTAGCGGTTTTG+CGG | - | chr4.2:83806686-83806705 | None:intergenic | 55.0% |
| ! | AAGCTACAGAGGCACAACCG+CGG | + | chr4.2:83807988-83808007 | MS.gene99436:CDS | 55.0% |
| !!! | TGTTTTGGGGTGTGGTGGGT+GGG | + | chr4.2:83805423-83805442 | MS.gene99436:intron | 55.0% |
| !!! | TTGTTTTGGGGTGTGGTGGG+TGG | + | chr4.2:83805422-83805441 | MS.gene99436:intron | 55.0% |
| AGCAGCGCGTGAAGCTACAG+AGG | + | chr4.2:83807977-83807996 | MS.gene99436:CDS | 60.0% | |
| CATTGAGCCCACTGAAGGGG+AGG | + | chr4.2:83808133-83808152 | MS.gene99436:CDS | 60.0% | |
| GCCATGGCAGCATCAGGTTC+TGG | - | chr4.2:83806277-83806296 | None:intergenic | 60.0% | |
| GTGGGATCCTCCCCTTCAGT+GGG | - | chr4.2:83808143-83808162 | None:intergenic | 60.0% | |
| TGTGGGATCCTCCCCTTCAG+TGG | - | chr4.2:83808144-83808163 | None:intergenic | 60.0% | |
| ! | ACGCTGCGTAGCGGTTTTGC+GGG | - | chr4.2:83806685-83806704 | None:intergenic | 60.0% |
| ! | AGCTACAGAGGCACAACCGC+GGG | + | chr4.2:83807989-83808008 | MS.gene99436:CDS | 60.0% |
| !! | TGGCTTGTTGCGTAGCGCTC+CGG | + | chr4.2:83806744-83806763 | MS.gene99436:intron | 60.0% |
| GACTCGGAAACCAGTCCCCG+CGG | - | chr4.2:83808008-83808027 | None:intergenic | 65.0% | |
| ! | CTGCGTAGCGGTTTTGCGGG+CGG | - | chr4.2:83806682-83806701 | None:intergenic | 65.0% |
| ! | GCTACAGAGGCACAACCGCG+GGG | + | chr4.2:83807990-83808009 | MS.gene99436:CDS | 65.0% |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr4.2:83806182-83806201 | MS.gene99436:intron | 65.0% |
| ! | TGCGTAGCGGTTTTGCGGGC+GGG | - | chr4.2:83806681-83806700 | None:intergenic | 65.0% |
| AGCGGCGCAACGCTGCGTAG+CGG | - | chr4.2:83806694-83806713 | None:intergenic | 70.0% | |
| TACCAGAGGGGGGCCCACCA+GGG | - | chr4.2:83805238-83805257 | None:intergenic | 70.0% | |
| TTACCAGAGGGGGGCCCACC+AGG | - | chr4.2:83805239-83805258 | None:intergenic | 70.0% | |
| ! | AGAGGCACAACCGCGGGGAC+TGG | + | chr4.2:83807995-83808014 | MS.gene99436:CDS | 70.0% |
| !!! | GCGGTTTTGCGGGCGGGTTG+CGG | - | chr4.2:83806675-83806694 | None:intergenic | 70.0% |
| GCACCGCGCGGCCGCTATAG+CGG | + | chr4.2:83806776-83806795 | MS.gene99436:intron | 75.0% | |
| GCTATAGCGGCCGCGCGGTG+CGG | - | chr4.2:83806777-83806796 | None:intergenic | 75.0% | |
| GGGGGGCCCACCAGGGAAGA+AGG | - | chr4.2:83805231-83805250 | None:intergenic | 75.0% | |
| ! | TTCCCTGGTGGGCCCCCCTC+TGG | + | chr4.2:83805233-83805252 | MS.gene99436:CDS | 75.0% |
| ! | GCGCCGCTATAGCGGCCGCG+CGG | - | chr4.2:83806782-83806801 | None:intergenic | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | - | chr4.2:83806772-83806791 | None:intergenic | 85.0% |
| ! | CGCGCGGTGCGGTGCGGTGC+CGG | - | chr4.2:83806766-83806785 | None:intergenic | 85.0% |
| ! | CGGCACCGCACCGCACCGCG+CGG | + | chr4.2:83806764-83806783 | MS.gene99436:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 83805056 | 83808175 | 83805056 | ID=MS.gene99436 |
| chr4.2 | mRNA | 83805056 | 83808175 | 83805056 | ID=MS.gene99436.t1;Parent=MS.gene99436 |
| chr4.2 | exon | 83805056 | 83805254 | 83805056 | ID=MS.gene99436.t1.exon1;Parent=MS.gene99436.t1 |
| chr4.2 | CDS | 83805056 | 83805254 | 83805056 | ID=cds.MS.gene99436.t1;Parent=MS.gene99436.t1 |
| chr4.2 | exon | 83806943 | 83807103 | 83806943 | ID=MS.gene99436.t1.exon2;Parent=MS.gene99436.t1 |
| chr4.2 | CDS | 83806943 | 83807103 | 83806943 | ID=cds.MS.gene99436.t1;Parent=MS.gene99436.t1 |
| chr4.2 | exon | 83807939 | 83808175 | 83807939 | ID=MS.gene99436.t1.exon3;Parent=MS.gene99436.t1 |
| chr4.2 | CDS | 83807939 | 83808175 | 83807939 | ID=cds.MS.gene99436.t1;Parent=MS.gene99436.t1 |
| Gene Sequence |
| Protein sequence |
