AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99761

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99761.t1 MTR_2g462000 98.636 440 6 0 14 453 3 442 0.0 910
MS.gene99761.t1 MTR_6g015880 69.082 414 124 1 17 430 1 410 0.0 642
MS.gene99761.t1 MTR_7g015960 66.434 429 137 2 17 445 1 422 0.0 636
MS.gene99761.t1 MTR_2g462010 60.092 436 166 3 19 451 18 448 0.0 585
MS.gene99761.t1 MTR_7g015960 68.312 385 115 2 61 445 35 412 0.0 583
MS.gene99761.t1 MTR_7g015950 59.954 432 161 4 25 449 17 443 0.0 573
MS.gene99761.t1 MTR_6g015875 57.428 451 176 5 1 447 1 439 0.0 559
MS.gene99761.t1 MTR_2g104890 50.714 420 196 4 34 446 27 442 5.77e-173 493
MS.gene99761.t1 MTR_6g015865 57.493 367 141 4 67 429 3 358 8.90e-161 458
MS.gene99761.t1 MTR_3g117690 39.810 422 232 8 33 444 27 436 2.53e-118 353
MS.gene99761.t1 MTR_2g034950 28.875 471 274 22 30 453 197 653 3.81e-35 138
MS.gene99761.t1 MTR_4g121080 28.416 461 269 21 4 418 173 618 1.63e-34 136
MS.gene99761.t1 MTR_5g005590 28.266 421 245 18 43 418 210 618 4.69e-33 132
MS.gene99761.t1 MTR_2g083210 27.273 418 253 18 43 419 226 633 2.17e-29 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99761.t1 AT5G15630 72.932 399 104 2 33 431 18 412 0.0 646
MS.gene99761.t1 AT5G15630 72.895 380 99 2 52 431 1 376 0.0 612
MS.gene99761.t1 AT5G15630 72.877 365 95 2 67 431 3 363 0.0 589
MS.gene99761.t1 AT5G15630 72.877 365 95 2 67 431 3 363 0.0 589
MS.gene99761.t1 AT5G60920 61.305 429 154 4 20 438 15 441 0.0 588
MS.gene99761.t1 AT3G02210 58.161 435 171 4 19 450 22 448 0.0 565
MS.gene99761.t1 AT5G60920 63.384 396 139 3 47 438 1 394 0.0 563
MS.gene99761.t1 AT3G29810 59.615 416 156 4 34 444 27 435 0.0 556
MS.gene99761.t1 AT5G15630 69.725 327 95 2 33 359 18 340 1.76e-180 508
MS.gene99761.t1 AT1G09790 48.792 414 201 6 17 427 7 412 9.69e-142 413
MS.gene99761.t1 AT1G09790 47.765 425 200 7 17 427 7 423 6.65e-139 406
MS.gene99761.t1 AT5G60950 49.171 181 84 2 43 223 30 202 9.11e-58 189
MS.gene99761.t1 AT4G16120 28.673 422 247 19 43 418 217 630 2.73e-39 150
MS.gene99761.t1 AT5G49270 27.729 458 276 20 36 447 210 658 9.22e-39 149
MS.gene99761.t1 AT4G27110 27.740 447 269 18 43 443 219 657 8.13e-34 134
MS.gene99761.t1 AT3G16860 27.948 458 265 24 43 451 210 651 2.11e-32 130
MS.gene99761.t1 AT3G20580 28.070 456 262 21 43 449 229 667 7.37e-32 129

Find 115 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCCATATGATTTCTTTCT+TGG 0.151399 2.1:+34877205 None:intergenic
TCAACTTCAGGCATGGAATT+TGG 0.180595 2.1:-34878140 None:intergenic
CCAAGAAGGGTATACTTTAA+TGG 0.194580 2.1:-34875360 MS.gene99761:CDS
TATTTCCAGCAACCTCTTTC+AGG 0.198489 2.1:+34876000 None:intergenic
CCATTAAAGTATACCCTTCT+TGG 0.215939 2.1:+34875360 None:intergenic
AACACAACAGCTTGGGTTCT+TGG 0.235897 2.1:+34876398 None:intergenic
AAGACAATTACAAGGATTAT+TGG 0.247589 2.1:-34875890 MS.gene99761:CDS
GGTAGCCTTTGAGCAGAATT+TGG 0.247873 2.1:+34875294 None:intergenic
AACTGTCTTGTTAGTCCTTC+CGG 0.267626 2.1:+34876968 None:intergenic
ATTCTACAATGATTTAATAA+TGG 0.323384 2.1:-34875469 MS.gene99761:CDS
GATGACAACCTATGTGATTA+TGG 0.323525 2.1:-34875256 MS.gene99761:CDS
GTGCATTGCAATAATGGTTT+TGG 0.338381 2.1:+34875951 None:intergenic
GGGTAACATTACTGAGATTA+GGG 0.358595 2.1:+34875796 None:intergenic
TAATGGAAGCTGGGGCTAAA+GGG 0.368160 2.1:-34875452 MS.gene99761:CDS
TGGCGTGTGCATTGCAATAA+TGG 0.370402 2.1:+34875945 None:intergenic
CAAGTTGTTGACTTATTACC+TGG 0.372283 2.1:-34877101 MS.gene99761:CDS
GATGACACAGGAATGTTCTA+TGG 0.385600 2.1:-34875498 MS.gene99761:CDS
TGTTGCTTGCGCTCCCATCA+TGG 0.386890 2.1:+34877184 None:intergenic
ATGGACATCAGATGGTTATA+TGG 0.392606 2.1:-34877873 MS.gene99761:intron
ATCCCGGGTTCATAATGTTT+CGG 0.395348 2.1:+34877249 None:intergenic
AGGTGGTGTGCTAACATCTT+GGG 0.396771 2.1:-34877042 MS.gene99761:CDS
TGGGTAACATTACTGAGATT+AGG 0.404033 2.1:+34875795 None:intergenic
TTTGATCCATTGGATCCAAC+TGG 0.408485 2.1:-34877926 MS.gene99761:CDS
GGGCCAAGAAAGAAATCATA+TGG 0.421488 2.1:-34877208 MS.gene99761:CDS
TAGATTGAATTACACACAAT+GGG 0.422713 2.1:-34875835 MS.gene99761:CDS
TGAGCAGAATTTGGCAAGAA+AGG 0.426117 2.1:+34875303 None:intergenic
ATATGCCAATGCACACGAAC+AGG 0.426620 2.1:+34875915 None:intergenic
ATAATGGAAGCTGGGGCTAA+AGG 0.427586 2.1:-34875453 MS.gene99761:CDS
TCTTGGGGACAGGACCCTTC+AGG 0.429022 2.1:-34877026 MS.gene99761:CDS
AACTTACTTATGGCTTCATA+AGG 0.429069 2.1:+34875741 None:intergenic
GGCAAGAAAGGGTATGAATC+AGG 0.435645 2.1:+34875315 None:intergenic
TGTAGAGGCATTTGATCCAT+TGG 0.442199 2.1:-34877936 MS.gene99761:intron
AATGATTTAATAATGGAAGC+TGG 0.446216 2.1:-34875462 MS.gene99761:CDS
ATGAACCCGGGATGGACATT+GGG 0.450430 2.1:-34877239 MS.gene99761:CDS
TCTGTAAGAATAACAGTTGA+AGG 0.452263 2.1:+34876876 None:intergenic
AAGATCCTGAAAGAGGTTGC+TGG 0.460769 2.1:-34876005 MS.gene99761:CDS
AAATTGCTTGGACCGGGAGC+AGG 0.463331 2.1:-34876927 MS.gene99761:CDS
TATGAACCCGGGATGGACAT+TGG 0.467911 2.1:-34877240 MS.gene99761:CDS
GAGCAGAATTTGGCAAGAAA+GGG 0.471958 2.1:+34875304 None:intergenic
GTCCATCCCAATGTCCATCC+CGG 0.473162 2.1:+34877233 None:intergenic
AGAAATCATATGGGCCATGA+TGG 0.480849 2.1:-34877198 MS.gene99761:CDS
ATGATTTAATAATGGAAGCT+GGG 0.480905 2.1:-34875461 MS.gene99761:CDS
ATAAAGAAACACAACAGCTT+GGG 0.481011 2.1:+34876391 None:intergenic
TTTGTCCTGTTCGTGTGCAT+TGG 0.488987 2.1:-34875920 MS.gene99761:CDS
TGCAATCTCGGCATTTCAGA+TGG 0.490026 2.1:-34877003 MS.gene99761:CDS
GGACTTCTCTTGCAACTATG+AGG 0.491344 2.1:+34877125 None:intergenic
TCAGGCATGGAATTTGGTAA+TGG 0.494974 2.1:-34878134 None:intergenic
CATTTACACTCAAGCAAGGA+TGG 0.495829 2.1:-34875389 MS.gene99761:CDS
ATAAGTACATGTCACATTCC+AGG 0.497470 2.1:+34876437 None:intergenic
GATAAAGAAACACAACAGCT+TGG 0.498328 2.1:+34876390 None:intergenic
AGCAGGATATTCATGTGGTC+CGG 0.500729 2.1:-34876910 MS.gene99761:CDS
ACATTCCCAGTTGGATCCAA+TGG 0.502942 2.1:+34877920 None:intergenic
CTGGGAATGTGACAATAAGA+TGG 0.503167 2.1:-34877907 MS.gene99761:CDS
GGACCCTTCAGGTGCAATCT+CGG 0.506260 2.1:-34877015 MS.gene99761:CDS
CAAGACAGTTAAACTACCTC+AGG 0.509450 2.1:-34876955 MS.gene99761:CDS
GTCATCATTACAACACTTGT+TGG 0.509754 2.1:+34875273 None:intergenic
GATGGACATTGGGATGGACA+TGG 0.513013 2.1:-34877229 MS.gene99761:CDS
CAGATGGGTGTAGGACTCTC+CGG 0.515620 2.1:-34876987 MS.gene99761:CDS
ATCTGAGGTGCTTATGAAGA+AGG 0.516290 2.1:-34875421 MS.gene99761:CDS
AAGGTGGTGTGCTAACATCT+TGG 0.517435 2.1:-34877043 MS.gene99761:CDS
ACAACAGCTTGGGTTCTTGG+AGG 0.528958 2.1:+34876401 None:intergenic
CTTATTGTCACATTCCCAGT+TGG 0.532085 2.1:+34877911 None:intergenic
TGTATTCAAAACTATAGACT+TGG 0.537143 2.1:+34875775 None:intergenic
CTCATTCTTATATCTCCAGC+TGG 0.543127 2.1:-34878050 MS.gene99761:intron
GCTTGTCCAACTTGTGCTTG+TGG 0.548007 2.1:-34876342 MS.gene99761:CDS
TCTTGCCAAATTCTGCTCAA+AGG 0.554568 2.1:-34875299 MS.gene99761:CDS
GGTAATAAGTCAACAACTTG+AGG 0.555852 2.1:+34877104 None:intergenic
TACATTTAGAGAGCTGAAGT+TGG 0.560296 2.1:-34878093 MS.gene99761:CDS
TCCATCCCAATGTCCATCCC+GGG 0.564265 2.1:+34877234 None:intergenic
TGCATATTGTAAGATGCTCC+AGG 0.567353 2.1:+34877083 None:intergenic
GAAATCATATGGGCCATGAT+GGG 0.570678 2.1:-34877197 MS.gene99761:CDS
TGTGCTAACATCTTGGGGAC+AGG 0.571959 2.1:-34877036 MS.gene99761:CDS
TACACAAACTGTTGCAAAGG+TGG 0.573020 2.1:-34877059 MS.gene99761:CDS
AAATGATGCCATAATCACAT+AGG 0.574405 2.1:+34875248 None:intergenic
ATGGACATTGGGATGGACAT+GGG 0.576385 2.1:-34877228 MS.gene99761:CDS
ATGCCGAGATTGCACCTGAA+GGG 0.577152 2.1:+34877012 None:intergenic
TTGCTGGAAATAACAAGACT+AGG 0.578763 2.1:-34875989 MS.gene99761:CDS
CCACATGAATATCCTGCTCC+CGG 0.579683 2.1:+34876915 None:intergenic
GTTGAAGGAACTCTCTTAGC+CGG 0.580085 2.1:+34876891 None:intergenic
GGAGCGCAAGCAACAGAACA+AGG 0.580360 2.1:-34877176 MS.gene99761:CDS
GCATATAAAAGACAATTACA+AGG 0.580410 2.1:-34875898 MS.gene99761:CDS
CAATACACAAACTGTTGCAA+AGG 0.581528 2.1:-34877062 MS.gene99761:CDS
TCGGCATTTCAGATGGGTGT+AGG 0.583929 2.1:-34876996 MS.gene99761:CDS
TGATTTAATAATGGAAGCTG+GGG 0.584574 2.1:-34875460 MS.gene99761:CDS
TGACAACCACAAGCACAAGT+TGG 0.585659 2.1:+34876336 None:intergenic
AAAGGGTATGAATCAGGAGG+TGG 0.587392 2.1:+34875321 None:intergenic
ACCCGGGATGGACATTGGGA+TGG 0.588555 2.1:-34877235 MS.gene99761:CDS
TGGGAATGTGACAATAAGAT+GGG 0.590389 2.1:-34877906 MS.gene99761:CDS
ATGGCTTCATAAGGAAGAAG+TGG 0.591100 2.1:+34875750 None:intergenic
AGATTCAAAGATCCTGAAAG+AGG 0.596172 2.1:-34876012 MS.gene99761:CDS
AAGTTGGACAAGCTGTGACT+TGG 0.597255 2.1:+34876352 None:intergenic
AATGCCGAGATTGCACCTGA+AGG 0.597959 2.1:+34877011 None:intergenic
GGCCAAGAAAGAAATCATAT+GGG 0.602816 2.1:-34877207 MS.gene99761:CDS
ATTATGTCATGGACATCAGA+TGG 0.603721 2.1:-34877881 MS.gene99761:CDS
ATTTACACTCAAGCAAGGAT+GGG 0.604012 2.1:-34875388 MS.gene99761:CDS
GTATTCAAAACTATAGACTT+GGG 0.605359 2.1:+34875776 None:intergenic
ATACCGAAACATTATGAACC+CGG 0.606089 2.1:-34877252 MS.gene99761:CDS
GCAATCTCGGCATTTCAGAT+GGG 0.606491 2.1:-34877002 MS.gene99761:CDS
TACCGAAACATTATGAACCC+GGG 0.608883 2.1:-34877251 MS.gene99761:CDS
TTATTCTTACAGATGATCGT+AGG 0.609804 2.1:-34876866 MS.gene99761:CDS
TTGATCCATTGGATCCAACT+GGG 0.610985 2.1:-34877925 MS.gene99761:CDS
GAAACATTATGAACCCGGGA+TGG 0.613102 2.1:-34877247 MS.gene99761:CDS
TAAGATGGGATATTATGTCA+TGG 0.615769 2.1:-34877892 MS.gene99761:CDS
GGTGGTGTGCTAACATCTTG+GGG 0.624710 2.1:-34877041 MS.gene99761:CDS
ATAGATTGAATTACACACAA+TGG 0.625326 2.1:-34875836 MS.gene99761:CDS
AACACATTTACACTCAAGCA+AGG 0.626909 2.1:-34875393 MS.gene99761:CDS
TAAAGGGAATGTGCAATCTG+AGG 0.631122 2.1:-34875436 MS.gene99761:CDS
CCAAGCAATTTAAAATCCTG+AGG 0.636131 2.1:+34876939 None:intergenic
TGGGTGTAGGACTCTCCGGA+AGG 0.662739 2.1:-34876983 MS.gene99761:CDS
AATGCACACGAACAGGACAA+AGG 0.669891 2.1:+34875922 None:intergenic
CCGGGAGCAGGATATTCATG+TGG 0.685860 2.1:-34876915 MS.gene99761:CDS
GCACACGAACAGGACAAAGG+TGG 0.685930 2.1:+34875925 None:intergenic
AAGAAAGGGTATGAATCAGG+AGG 0.687329 2.1:+34875318 None:intergenic
AGATTGAATTACACACAATG+GGG 0.732036 2.1:-34875834 MS.gene99761:CDS
ATTGTGTATGCAGATGACAC+AGG 0.753079 2.1:-34875510 MS.gene99761:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATAATTTTATTCTTT+TGG + chr2.1:34875644-34875663 None:intergenic 10.0%
!! ATTCTACAATGATTTAATAA+TGG - chr2.1:34877892-34877911 MS.gene99761:CDS 15.0%
!! ATATTTGAAGAACTTACTTA+TGG + chr2.1:34877633-34877652 None:intergenic 20.0%
!! TAATAGTACATTTGTATTCA+AGG + chr2.1:34876864-34876883 None:intergenic 20.0%
!! TATTAGATAATACTATTTCC+AGG + chr2.1:34876786-34876805 None:intergenic 20.0%
!! TTAATATTCGCATAATAACA+CGG - chr2.1:34875821-34875840 MS.gene99761:CDS 20.0%
!! TTGCATATATGAAAAAACAT+AGG - chr2.1:34875343-34875362 MS.gene99761:CDS 20.0%
!!! ATTTTATTTTATGCTTGTAG+AGG - chr2.1:34875410-34875429 MS.gene99761:CDS 20.0%
!!! CACAATATAAAAGGTTTTAA+AGG + chr2.1:34877261-34877280 None:intergenic 20.0%
!!! CGAAAAACATATTTTCAAAA+TGG - chr2.1:34875907-34875926 MS.gene99761:CDS 20.0%
!!! CTTTAAAACCTTTTATATTG+TGG - chr2.1:34877259-34877278 MS.gene99761:CDS 20.0%
!!! TTATTATGTGTTACTATATC+AGG + chr2.1:34875774-34875793 None:intergenic 20.0%
! AAGACAATTACAAGGATTAT+TGG - chr2.1:34877471-34877490 MS.gene99761:intron 25.0%
! ACTATTTGCAATATACTCAA+AGG + chr2.1:34876556-34876575 None:intergenic 25.0%
! AGTAACTGAGATTCATTTAA+AGG + chr2.1:34875938-34875957 None:intergenic 25.0%
! ATAGATTGAATTACACACAA+TGG - chr2.1:34877525-34877544 MS.gene99761:intron 25.0%
! CTAGAAAAGGATTTGAATAA+TGG - chr2.1:34875732-34875751 MS.gene99761:intron 25.0%
! CTATTTGCAATATACTCAAA+GGG + chr2.1:34876555-34876574 None:intergenic 25.0%
! GAGTATATTGCAAATAGTTA+TGG - chr2.1:34876558-34876577 MS.gene99761:intron 25.0%
! GCATATAAAAGACAATTACA+AGG - chr2.1:34877463-34877482 MS.gene99761:intron 25.0%
! GTATTCAAAACTATAGACTT+GGG + chr2.1:34877588-34877607 None:intergenic 25.0%
! TAGATTGAATTACACACAAT+GGG - chr2.1:34877526-34877545 MS.gene99761:intron 25.0%
! TGTATTCAAAACTATAGACT+TGG + chr2.1:34877589-34877608 None:intergenic 25.0%
! TTAAAAGTTGGCTAATAATG+TGG + chr2.1:34877095-34877114 None:intergenic 25.0%
!! AATGATTTAATAATGGAAGC+TGG - chr2.1:34877899-34877918 MS.gene99761:CDS 25.0%
!! ATGATTTAATAATGGAAGCT+GGG - chr2.1:34877900-34877919 MS.gene99761:CDS 25.0%
!! GATACTATGATGTCAAATTT+TGG - chr2.1:34876054-34876073 MS.gene99761:intron 25.0%
!!! CATCATTTTTGGAAACATTT+TGG + chr2.1:34875598-34875617 None:intergenic 25.0%
!!! GTTTTTTTAACTTTTGTGCA+TGG - chr2.1:34877824-34877843 MS.gene99761:intron 25.0%
!!! TTATGGCATCATTTTTCATT+TGG - chr2.1:34878122-34878141 MS.gene99761:CDS 25.0%
AAATGATGCCATAATCACAT+AGG + chr2.1:34878116-34878135 None:intergenic 30.0%
AACTTACTTATGGCTTCATA+AGG + chr2.1:34877623-34877642 None:intergenic 30.0%
ACTGCATAGGAAAAAAATAC+AGG + chr2.1:34876902-34876921 None:intergenic 30.0%
AGATTGAATTACACACAATG+GGG - chr2.1:34877527-34877546 MS.gene99761:intron 30.0%
ATAAAGAAACACAACAGCTT+GGG + chr2.1:34876973-34876992 None:intergenic 30.0%
ATGAAACTCTACGCATTATA+GGG + chr2.1:34877793-34877812 None:intergenic 30.0%
ATTTGTCATTATGCAAATGC+AGG - chr2.1:34877324-34877343 MS.gene99761:intron 30.0%
CTACATTTGACCATAATTCT+CGG + chr2.1:34876633-34876652 None:intergenic 30.0%
GAAAAGGATTTGAATAATGG+TGG - chr2.1:34875735-34875754 MS.gene99761:intron 30.0%
GAAATGCAGTCAAATACAAT+TGG - chr2.1:34877154-34877173 MS.gene99761:CDS 30.0%
TAAGATGGGATATTATGTCA+TGG - chr2.1:34875469-34875488 MS.gene99761:CDS 30.0%
TAATGTGGAAGTAGAGATTA+AGG + chr2.1:34877080-34877099 None:intergenic 30.0%
TCCAAAAATGATGAAATCAC+TGG - chr2.1:34875605-34875624 MS.gene99761:intron 30.0%
TCTGTAAGAATAACAGTTGA+AGG + chr2.1:34876488-34876507 None:intergenic 30.0%
TTATTCTTACAGATGATCGT+AGG - chr2.1:34876495-34876514 MS.gene99761:intron 30.0%
TTCGAATAATGTTGCAATTG+CGG + chr2.1:34877285-34877304 None:intergenic 30.0%
TTTAATACTGCCGAGAATTA+TGG - chr2.1:34876620-34876639 MS.gene99761:intron 30.0%
! ACCAGTGATTTCATCATTTT+TGG + chr2.1:34875609-34875628 None:intergenic 30.0%
! CTGATCATGCTATTCTTTTA+AGG - chr2.1:34875532-34875551 MS.gene99761:intron 30.0%
! GTTGTCTTATTAAGATCAGA+CGG + chr2.1:34877716-34877735 None:intergenic 30.0%
! TGATTTAATAATGGAAGCTG+GGG - chr2.1:34877901-34877920 MS.gene99761:CDS 30.0%
!! ATATGTTTTTCGATACTCAC+TGG + chr2.1:34875899-34875918 None:intergenic 30.0%
AACACATTTACACTCAAGCA+AGG - chr2.1:34877968-34877987 MS.gene99761:intron 35.0%
AAGATACCAAGCTTGAAATC+TGG - chr2.1:34877689-34877708 MS.gene99761:intron 35.0%
AATGAATCTCAGTTACTTCG+AGG - chr2.1:34875941-34875960 MS.gene99761:CDS 35.0%
AATTGCGGCCACAATATAAA+AGG + chr2.1:34877270-34877289 None:intergenic 35.0%
AGATTCAAAGATCCTGAAAG+AGG - chr2.1:34877349-34877368 MS.gene99761:intron 35.0%
AGGATCTGCAATTACAATCA+AGG + chr2.1:34876718-34876737 None:intergenic 35.0%
ATAAGTACATGTCACATTCC+AGG + chr2.1:34876927-34876946 None:intergenic 35.0%
ATACCGAAACATTATGAACC+CGG - chr2.1:34876109-34876128 MS.gene99761:intron 35.0%
ATGAATCTCAGTTACTTCGA+GGG - chr2.1:34875942-34875961 MS.gene99761:CDS 35.0%
ATGCAAAGTAATTTACCAGC+TGG + chr2.1:34875329-34875348 None:intergenic 35.0%
ATGGACATCAGATGGTTATA+TGG - chr2.1:34875488-34875507 MS.gene99761:CDS 35.0%
ATTATGTCATGGACATCAGA+TGG - chr2.1:34875480-34875499 MS.gene99761:CDS 35.0%
ATTTACACTCAAGCAAGGAT+GGG - chr2.1:34877973-34877992 MS.gene99761:intron 35.0%
CAATACACAAACTGTTGCAA+AGG - chr2.1:34876299-34876318 MS.gene99761:intron 35.0%
CATGAAACTCTACGCATTAT+AGG + chr2.1:34877794-34877813 None:intergenic 35.0%
CCATTAAAGTATACCCTTCT+TGG + chr2.1:34878004-34878023 None:intergenic 35.0%
GATAAAGAAACACAACAGCT+TGG + chr2.1:34876974-34876993 None:intergenic 35.0%
GATGACAACCTATGTGATTA+TGG - chr2.1:34878105-34878124 MS.gene99761:CDS 35.0%
GGCCAAGAAAGAAATCATAT+GGG - chr2.1:34876154-34876173 MS.gene99761:intron 35.0%
GGGTAACATTACTGAGATTA+GGG + chr2.1:34877568-34877587 None:intergenic 35.0%
GGTAATAAGTCAACAACTTG+AGG + chr2.1:34876260-34876279 None:intergenic 35.0%
GGTTTCTATAACTGCAATTG+CGG + chr2.1:34877240-34877259 None:intergenic 35.0%
GTCATCATTACAACACTTGT+TGG + chr2.1:34878091-34878110 None:intergenic 35.0%
GTGTAACACACATAGATGTT+TGG - chr2.1:34875843-34875862 MS.gene99761:CDS 35.0%
TACATTTAGAGAGCTGAAGT+TGG - chr2.1:34875268-34875287 MS.gene99761:CDS 35.0%
TAGATTCGAGAAGCTAGAAA+AGG - chr2.1:34875719-34875738 MS.gene99761:intron 35.0%
TAGCATGATCAGACAAAGTT+TGG + chr2.1:34875524-34875543 None:intergenic 35.0%
TGGGAATGTGACAATAAGAT+GGG - chr2.1:34875455-34875474 MS.gene99761:CDS 35.0%
TGGGTAACATTACTGAGATT+AGG + chr2.1:34877569-34877588 None:intergenic 35.0%
TTAATCTCCACAATTACACG+TGG - chr2.1:34875966-34875985 MS.gene99761:CDS 35.0%
TTGCTGGAAATAACAAGACT+AGG - chr2.1:34877372-34877391 MS.gene99761:intron 35.0%
! AACCATCAAGGTTTTCGAAA+AGG + chr2.1:34876738-34876757 None:intergenic 35.0%
! ATCCTTTTCGAAAACCTTGA+TGG - chr2.1:34876733-34876752 MS.gene99761:intron 35.0%
! CCAAGAAGGGTATACTTTAA+TGG - chr2.1:34878001-34878020 MS.gene99761:intron 35.0%
! CCAAGCAATTTAAAATCCTG+AGG + chr2.1:34876425-34876444 None:intergenic 35.0%
! CCTCAGGATTTTAAATTGCT+TGG - chr2.1:34876422-34876441 MS.gene99761:CDS 35.0%
! GATTTTAAATTGCTTGGACC+GGG - chr2.1:34876428-34876447 MS.gene99761:CDS 35.0%
! GGATTTTAAATTGCTTGGAC+CGG - chr2.1:34876427-34876446 MS.gene99761:CDS 35.0%
! GTGCATTGCAATAATGGTTT+TGG + chr2.1:34877413-34877432 None:intergenic 35.0%
!! CAAGTTGTTGACTTATTACC+TGG - chr2.1:34876260-34876279 MS.gene99761:intron 35.0%
!! CTATGATGTCAAATTTTGGC+AGG - chr2.1:34876058-34876077 MS.gene99761:intron 35.0%
AATTGCACGCATTCATACAG+TGG + chr2.1:34877749-34877768 None:intergenic 40.0%
ACACGAACTCCTATGGTTAA+GGG + chr2.1:34875871-34875890 None:intergenic 40.0%
AGAAATCATATGGGCCATGA+TGG - chr2.1:34876163-34876182 MS.gene99761:intron 40.0%
ATCCCGGGTTCATAATGTTT+CGG + chr2.1:34876115-34876134 None:intergenic 40.0%
ATGGCTTCATAAGGAAGAAG+TGG + chr2.1:34877614-34877633 None:intergenic 40.0%
ATTGTGTATGCAGATGACAC+AGG - chr2.1:34877851-34877870 MS.gene99761:intron 40.0%
CAAGACAGTTAAACTACCTC+AGG - chr2.1:34876406-34876425 MS.gene99761:CDS 40.0%
CATTTACACTCAAGCAAGGA+TGG - chr2.1:34877972-34877991 MS.gene99761:intron 40.0%
CTATCATCCACGTGTAATTG+TGG + chr2.1:34875976-34875995 None:intergenic 40.0%
CTCATTCTTATATCTCCAGC+TGG - chr2.1:34875311-34875330 MS.gene99761:CDS 40.0%
CTCGACAGCAGTTTAAAAGT+TGG + chr2.1:34877107-34877126 None:intergenic 40.0%
CTCTACGCATTATAGGGATT+TGG + chr2.1:34877787-34877806 None:intergenic 40.0%
CTGGGAATGTGACAATAAGA+TGG - chr2.1:34875454-34875473 MS.gene99761:CDS 40.0%
CTTATTGTCACATTCCCAGT+TGG + chr2.1:34875453-34875472 None:intergenic 40.0%
GAAATCATATGGGCCATGAT+GGG - chr2.1:34876164-34876183 MS.gene99761:intron 40.0%
GAGCAGAATTTGGCAAGAAA+GGG + chr2.1:34878060-34878079 None:intergenic 40.0%
GATGACACAGGAATGTTCTA+TGG - chr2.1:34877863-34877882 MS.gene99761:intron 40.0%
GGCCCATATGATTTCTTTCT+TGG + chr2.1:34876159-34876178 None:intergenic 40.0%
GGGCCAAGAAAGAAATCATA+TGG - chr2.1:34876153-34876172 MS.gene99761:intron 40.0%
TAAAGGGAATGTGCAATCTG+AGG - chr2.1:34877925-34877944 MS.gene99761:CDS 40.0%
TACACAAACTGTTGCAAAGG+TGG - chr2.1:34876302-34876321 MS.gene99761:intron 40.0%
TACCGAAACATTATGAACCC+GGG - chr2.1:34876110-34876129 MS.gene99761:intron 40.0%
TATTTCCAGCAACCTCTTTC+AGG + chr2.1:34877364-34877383 None:intergenic 40.0%
TCTTGCCAAATTCTGCTCAA+AGG - chr2.1:34878062-34878081 MS.gene99761:CDS 40.0%
TGAATCTCAGTTACTTCGAG+GGG - chr2.1:34875943-34875962 MS.gene99761:CDS 40.0%
TGAGCAGAATTTGGCAAGAA+AGG + chr2.1:34878061-34878080 None:intergenic 40.0%
TGCATATTGTAAGATGCTCC+AGG + chr2.1:34876281-34876300 None:intergenic 40.0%
TGTTTGGATCCCTTAACCAT+AGG - chr2.1:34875859-34875878 MS.gene99761:CDS 40.0%
TTGATCCATTGGATCCAACT+GGG - chr2.1:34875436-34875455 MS.gene99761:CDS 40.0%
TTTGATCCATTGGATCCAAC+TGG - chr2.1:34875435-34875454 MS.gene99761:CDS 40.0%
! AACTGTCTTGTTAGTCCTTC+CGG + chr2.1:34876396-34876415 None:intergenic 40.0%
! AAGAAAGGGTATGAATCAGG+AGG + chr2.1:34878046-34878065 None:intergenic 40.0%
! ATCTGAGGTGCTTATGAAGA+AGG - chr2.1:34877940-34877959 MS.gene99761:intron 40.0%
! CAACTTTTAAACTGCTGTCG+AGG - chr2.1:34877105-34877124 MS.gene99761:CDS 40.0%
! TGCAACTTCAATTGCTGTTG+TGG - chr2.1:34877181-34877200 MS.gene99761:CDS 40.0%
!! ACGCTTTAAAGAAACTGTCC+TGG - chr2.1:34876765-34876784 MS.gene99761:intron 40.0%
!! AGCGTTGATTGTAACCATCA+AGG + chr2.1:34876750-34876769 None:intergenic 40.0%
!! TGTAGAGGCATTTGATCCAT+TGG - chr2.1:34875425-34875444 MS.gene99761:CDS 40.0%
!!! TTTTTTCCTATGCAGTGTCC+TGG - chr2.1:34876906-34876925 MS.gene99761:CDS 40.0%
AACACAACAGCTTGGGTTCT+TGG + chr2.1:34876966-34876985 None:intergenic 45.0%
AACCATAGGAGTTCGTGTCA+TGG - chr2.1:34875873-34875892 MS.gene99761:CDS 45.0%
AAGATCCTGAAAGAGGTTGC+TGG - chr2.1:34877356-34877375 MS.gene99761:intron 45.0%
AAGGTGGTGTGCTAACATCT+TGG - chr2.1:34876318-34876337 MS.gene99761:CDS 45.0%
AAGTTGGACAAGCTGTGACT+TGG + chr2.1:34877012-34877031 None:intergenic 45.0%
AATGCACACGAACAGGACAA+AGG + chr2.1:34877442-34877461 None:intergenic 45.0%
ACATTCCCAGTTGGATCCAA+TGG + chr2.1:34875444-34875463 None:intergenic 45.0%
AGCAGGATATTCATGTGGTC+CGG - chr2.1:34876451-34876470 MS.gene99761:intron 45.0%
AGGTGGTGTGCTAACATCTT+GGG - chr2.1:34876319-34876338 MS.gene99761:CDS 45.0%
ATATGCCAATGCACACGAAC+AGG + chr2.1:34877449-34877468 None:intergenic 45.0%
ATGGACATTGGGATGGACAT+GGG - chr2.1:34876133-34876152 MS.gene99761:intron 45.0%
GAAACATTATGAACCCGGGA+TGG - chr2.1:34876114-34876133 MS.gene99761:intron 45.0%
GACACGAACTCCTATGGTTA+AGG + chr2.1:34875872-34875891 None:intergenic 45.0%
GCAATCTCGGCATTTCAGAT+GGG - chr2.1:34876359-34876378 MS.gene99761:CDS 45.0%
GGACTTCTCTTGCAACTATG+AGG + chr2.1:34876239-34876258 None:intergenic 45.0%
GGTAGCCTTTGAGCAGAATT+TGG + chr2.1:34878070-34878089 None:intergenic 45.0%
GTTGAAGGAACTCTCTTAGC+CGG + chr2.1:34876473-34876492 None:intergenic 45.0%
TAATGGAAGCTGGGGCTAAA+GGG - chr2.1:34877909-34877928 MS.gene99761:CDS 45.0%
TCGCATTTGTCTGGATTCTG+CGG + chr2.1:34877217-34877236 None:intergenic 45.0%
TCTGGATTCTGCGGCAATTT+AGG + chr2.1:34877208-34877227 None:intergenic 45.0%
TGACAACCACAAGCACAAGT+TGG + chr2.1:34877028-34877047 None:intergenic 45.0%
TGCAATCTCGGCATTTCAGA+TGG - chr2.1:34876358-34876377 MS.gene99761:CDS 45.0%
TGGCGTGTGCATTGCAATAA+TGG + chr2.1:34877419-34877438 None:intergenic 45.0%
TTCATACAGTGGCACAGATG+TGG + chr2.1:34877738-34877757 None:intergenic 45.0%
TTTGTCCTGTTCGTGTGCAT+TGG - chr2.1:34877441-34877460 MS.gene99761:intron 45.0%
! AAAGGGTATGAATCAGGAGG+TGG + chr2.1:34878043-34878062 None:intergenic 45.0%
! ATAATGGAAGCTGGGGCTAA+AGG - chr2.1:34877908-34877927 MS.gene99761:CDS 45.0%
! GGCAAGAAAGGGTATGAATC+AGG + chr2.1:34878049-34878068 None:intergenic 45.0%
!! AAGGATGGGCTTTTCCAAGA+AGG - chr2.1:34877987-34878006 MS.gene99761:intron 45.0%
!! AGGATGGGCTTTTCCAAGAA+GGG - chr2.1:34877988-34878007 MS.gene99761:intron 45.0%
!! AAAAATAAATAAAATATAGA+CGG + chr2.1:34877662-34877681 None:intergenic 5.0%
AATGCCGAGATTGCACCTGA+AGG + chr2.1:34876353-34876372 None:intergenic 50.0%
ACAACAGCTTGGGTTCTTGG+AGG + chr2.1:34876963-34876982 None:intergenic 50.0%
ATGAACCCGGGATGGACATT+GGG - chr2.1:34876122-34876141 MS.gene99761:intron 50.0%
ATGCCGAGATTGCACCTGAA+GGG + chr2.1:34876352-34876371 None:intergenic 50.0%
CAATTGCGGTCGCATTTGTC+TGG + chr2.1:34877226-34877245 None:intergenic 50.0%
CACAAAGCGACGATCACTAC+AGG - chr2.1:34876832-34876851 MS.gene99761:intron 50.0%
CACATTCCAGGACACTGCAT+AGG + chr2.1:34876915-34876934 None:intergenic 50.0%
CCACATGAATATCCTGCTCC+CGG + chr2.1:34876449-34876468 None:intergenic 50.0%
CTGCAATACGACTGAGACTG+AGG + chr2.1:34876665-34876684 None:intergenic 50.0%
GACGGTCCAGATTTCAAGCT+TGG + chr2.1:34877698-34877717 None:intergenic 50.0%
GATGGACATTGGGATGGACA+TGG - chr2.1:34876132-34876151 MS.gene99761:intron 50.0%
GCTTGTCCAACTTGTGCTTG+TGG - chr2.1:34877019-34877038 MS.gene99761:CDS 50.0%
GGTGGTGTGCTAACATCTTG+GGG - chr2.1:34876320-34876339 MS.gene99761:CDS 50.0%
TATGAACCCGGGATGGACAT+TGG - chr2.1:34876121-34876140 MS.gene99761:intron 50.0%
TCGGCATTTCAGATGGGTGT+AGG - chr2.1:34876365-34876384 MS.gene99761:CDS 50.0%
TGTGCTAACATCTTGGGGAC+AGG - chr2.1:34876325-34876344 MS.gene99761:CDS 50.0%
AAATTGCTTGGACCGGGAGC+AGG - chr2.1:34876434-34876453 MS.gene99761:CDS 55.0%
CAGATGGGTGTAGGACTCTC+CGG - chr2.1:34876374-34876393 MS.gene99761:CDS 55.0%
CCGGGAGCAGGATATTCATG+TGG - chr2.1:34876446-34876465 MS.gene99761:intron 55.0%
GCACACGAACAGGACAAAGG+TGG + chr2.1:34877439-34877458 None:intergenic 55.0%
GGACCCTTCAGGTGCAATCT+CGG - chr2.1:34876346-34876365 MS.gene99761:CDS 55.0%
GGAGCGCAAGCAACAGAACA+AGG - chr2.1:34876185-34876204 MS.gene99761:intron 55.0%
GGCCATGACACGAACTCCTA+TGG + chr2.1:34875878-34875897 None:intergenic 55.0%
GTCCATCCCAATGTCCATCC+CGG + chr2.1:34876131-34876150 None:intergenic 55.0%
TCCATCCCAATGTCCATCCC+GGG + chr2.1:34876130-34876149 None:intergenic 55.0%
! TGTTGCTTGCGCTCCCATCA+TGG + chr2.1:34876180-34876199 None:intergenic 55.0%
ACCCGGGATGGACATTGGGA+TGG - chr2.1:34876126-34876145 MS.gene99761:intron 60.0%
TCTTGGGGACAGGACCCTTC+AGG - chr2.1:34876335-34876354 MS.gene99761:CDS 60.0%
TGGGTGTAGGACTCTCCGGA+AGG - chr2.1:34876378-34876397 MS.gene99761:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 34875233 34878150 34875233 ID=MS.gene99761
chr2.1 mRNA 34875233 34878150 34875233 ID=MS.gene99761.t1;Parent=MS.gene99761
chr2.1 exon 34878051 34878150 34878051 ID=MS.gene99761.t1.exon1;Parent=MS.gene99761.t1
chr2.1 CDS 34878051 34878150 34878051 ID=cds.MS.gene99761.t1;Parent=MS.gene99761.t1
chr2.1 exon 34877874 34877953 34877874 ID=MS.gene99761.t1.exon2;Parent=MS.gene99761.t1
chr2.1 CDS 34877874 34877953 34877874 ID=cds.MS.gene99761.t1;Parent=MS.gene99761.t1
chr2.1 exon 34876847 34877303 34876847 ID=MS.gene99761.t1.exon3;Parent=MS.gene99761.t1
chr2.1 CDS 34876847 34877303 34876847 ID=cds.MS.gene99761.t1;Parent=MS.gene99761.t1
chr2.1 exon 34876315 34876462 34876315 ID=MS.gene99761.t1.exon4;Parent=MS.gene99761.t1
chr2.1 CDS 34876315 34876462 34876315 ID=cds.MS.gene99761.t1;Parent=MS.gene99761.t1
chr2.1 exon 34875748 34876037 34875748 ID=MS.gene99761.t1.exon5;Parent=MS.gene99761.t1
chr2.1 CDS 34875748 34876037 34875748 ID=cds.MS.gene99761.t1;Parent=MS.gene99761.t1
chr2.1 exon 34875233 34875519 34875233 ID=MS.gene99761.t1.exon6;Parent=MS.gene99761.t1
chr2.1 CDS 34875233 34875519 34875233 ID=cds.MS.gene99761.t1;Parent=MS.gene99761.t1
Gene Sequence

>MS.gene99761

ATGGAATTTGGTAATGGTAAACATCATCAAAGATGTACATTTAGAGAGCTGAAGTTGGTTGCATTTGTTGCTCTCTGTCTCATTCTTATATCTCCAGCTGGTAAATTACTTTGCATATATGAAAAAACATAGGACTAAGAATATAATTGTATAAATGAATTCATTTAACTTTGTTTTATTTTATTTTATGCTTGTAGAGGCATTTGATCCATTGGATCCAACTGGGAATGTGACAATAAGATGGGATATTATGTCATGGACATCAGATGGTTATATGGTAAGTAAATTCCAAACTTTGTCTGATCATGCTATTCTTTTAAGGAAAAGTTAACTACAAATGTAATCATTATAAGTTGTGCATACCAAAATGTTTCCAAAAATGATGAAATCACTGGTCTTTTGTGATTACCAAAAGAATAAAATTATCAAAATTCAAATATTATGAACTTATAATATATAATCTGATGCTGATGTCGAACTAAGAAATAGATTCGAGAAGCTAGAAAAGGATTTGAATAATGGTGGATTAATTGATACTCCTGATATAGTAACACATAATAATACTCTATATGATAGAAGTGTTTCATCTTAATATTCGCATAATAACACGGTGTAACACACATAGATGTTTGGATCCCTTAACCATAGGAGTTCGTGTCATGGCCAGTGAGTATCGAAAAACATATTTTCAAAATGGTGAATCCTTTAAATGAATCTCAGTTACTTCGAGGGGTTAATCTCCACAATTACACGTGGATGATAGCTTAATTTACACACAAAAATTCGCTAATTAATGCTCTAGCTATCTTCAAACTAATCAAGATACTATGATGTCAAATTTTGGCAGGCAACTGTAACTTTGTTTAACTTTCAACTATACCGAAACATTATGAACCCGGGATGGACATTGGGATGGACATGGGCCAAGAAAGAAATCATATGGGCCATGATGGGAGCGCAAGCAACAGAACAAGGAGATTGTTCAAAGTTCAAGTTAAAGATTCCTCATAGTTGCAAGAGAAGTCCTCAAGTTGTTGACTTATTACCTGGAGCATCTTACAATATGCAATACACAAACTGTTGCAAAGGTGGTGTGCTAACATCTTGGGGACAGGACCCTTCAGGTGCAATCTCGGCATTTCAGATGGGTGTAGGACTCTCCGGAAGGACTAACAAGACAGTTAAACTACCTCAGGATTTTAAATTGCTTGGACCGGGAGCAGGATATTCATGTGGTCCGGCTAAGAGAGTTCCTTCAACTGTTATTCTTACAGATGATCGTAGGCGAAAAGCTCAAGCTTTGAGTATGCATACTAATTCCCTTTGAGTATATTGCAAATAGTTATGGTTTACAATCACGATTTTAAATTGAATCTGCATCGTAATTTTTAATACTGCCGAGAATTATGGTCAAATGTAGCTGATGCAACCTCAGTCTCAGTCGTATTGCAGTCATTGTGACATCAAAACATGATGTCGCGACCTTGATTGTAATTGCAGATCCTTTTCGAAAACCTTGATGGTTACAATCAACGCTTTAAAGAAACTGTCCTGGAAATAGTATTATCTAATATTCGATAACAAAGTTTGTGATACAAACACAAAGCGACGATCACTACAGGTTAAAACCTTGAATACAAATGTACTATTAATATTATCTAATGTTCCTGTATTTTTTTCCTATGCAGTGTCCTGGAATGTGACATGTACTTATTCACAATTTCTTGCCTCCAAGAACCCAAGCTGTTGTGTTTCTTTATCAACATTCTACAATGACCAAGTCACAGCTTGTCCAACTTGTGCTTGTGGTTGTCAGAATAATGCTACTTGCGTCACGTAAGACACCTTAATCTCTACTTCCACATTATTAGCCAACTTTTAAACTGCTGTCGAGGTTGCATCATAATCATTTATAAGACAAGAAATGCAGTCAAATACAATTGGTTGATGCAACTTCAATTGCTGTTGTGGTCCTAAATTGCCGCAGAATCCAGACAAATGCGACCGCAATTGCAGTTATAGAAACCTTTAAAACCTTTTATATTGTGGCCGCAATTGCAACATTATTCGAAAATAGTAATGCTAATTTTGATTTGTCATTATGCAAATGCAGGAAAGATTCAAAGATCCTGAAAGAGGTTGCTGGAAATAACAAGACTAGGAAGAGTGATATTGCACCAAAACCATTATTGCAATGCACACGCCACCTTTGTCCTGTTCGTGTGCATTGGCATATAAAAGACAATTACAAGGATTATTGGCGTGTAAAGATTGCAATCATCAACTTCAAATATAGATTGAATTACACACAATGGGGTCTTGTTGTGCAACACCCTAATCTCAGTAATGTTACCCAAGTCTATAGTTTTGAATACATGCCACTTCTTCCTTATGAAGCCATAAGTAAGTTCTTCAAATATTAGACACCGTCTATATTTTATTTATTTTTTCAATCTAAGATACCAAGCTTGAAATCTGGACCGTCTGATCTTAATAAGACAACCACATCTGTGCCACTGTATGAATGCGTGCAATTTCGAGTGCATGCAATCCAAATCCCTATAATGCGTAGAGTTTCATGAAGAGTTTTTGTTTTTTTAACTTTTGTGCATGGCTGAATTGTGTATGCAGATGACACAGGAATGTTCTATGGTTTGAAATTCTACAATGATTTAATAATGGAAGCTGGGGCTAAAGGGAATGTGCAATCTGAGGTGCTTATGAAGAAGGACAAGAACACATTTACACTCAAGCAAGGATGGGCTTTTCCAAGAAGGGTATACTTTAATGGTGATGAATGTATGCTACCACCTCCTGATTCATACCCTTTCTTGCCAAATTCTGCTCAAAGGCTACCAACAAGTGTTGTAATGATGACAACCTATGTGATTATGGCATCATTTTTCATTTGGTTTTGA
Protein sequence

>MS.gene99761.t1

MEFGNGKHHQRCTFRELKLVAFVALCLILISPAEAFDPLDPTGNVTIRWDIMSWTSDGYMATVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGDCSKFKLKIPHSCKRSPQVVDLLPGASYNMQYTNCCKGGVLTSWGQDPSGAISAFQMGVGLSGRTNKTVKLPQDFKLLGPGAGYSCGPAKRVPSTVILTDDRRRKAQALMSWNVTCTYSQFLASKNPSCCVSLSTFYNDQVTACPTCACGCQNNATCVTKDSKILKEVAGNNKTRKSDIAPKPLLQCTRHLCPVRVHWHIKDNYKDYWRVKIAIINFKYRLNYTQWGLVVQHPNLSNVTQVYSFEYMPLLPYEAINDTGMFYGLKFYNDLIMEAGAKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPFLPNSAQRLPTSVVMMTTYVIMASFFIWF