Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99883.t1 | XP_003601042.2 | 98.7 | 224 | 3 | 0 | 1 | 224 | 1 | 224 | 8.50E-121 | 443 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99883.t1 | G7J300 | 98.7 | 224 | 3 | 0 | 1 | 224 | 1 | 224 | 6.1e-121 | 443.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050324 | MS.gene99883 | 0.805523 | 1.28E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99883.t1 | MTR_3g072390 | 98.661 | 224 | 3 | 0 | 1 | 224 | 1 | 224 | 5.34e-166 | 456 |
MS.gene99883.t1 | MTR_5g047050 | 35.795 | 176 | 100 | 4 | 61 | 224 | 62 | 236 | 5.68e-30 | 111 |
MS.gene99883.t1 | MTR_4g109880 | 34.545 | 165 | 100 | 3 | 67 | 224 | 59 | 222 | 1.50e-26 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99883.t1 | AT1G44760 | 58.850 | 226 | 73 | 6 | 3 | 224 | 4 | 213 | 8.54e-83 | 246 |
MS.gene99883.t1 | AT1G44760 | 58.850 | 226 | 73 | 6 | 3 | 224 | 75 | 284 | 1.99e-81 | 244 |
MS.gene99883.t1 | AT2G03720 | 38.122 | 181 | 99 | 5 | 56 | 224 | 53 | 232 | 1.11e-30 | 113 |
MS.gene99883.t1 | AT2G03720 | 39.157 | 166 | 90 | 4 | 69 | 224 | 1 | 165 | 1.38e-29 | 108 |
MS.gene99883.t1 | AT1G69080 | 32.222 | 180 | 101 | 3 | 66 | 224 | 44 | 223 | 1.91e-28 | 107 |
MS.gene99883.t1 | AT5G17390 | 36.310 | 168 | 97 | 3 | 67 | 224 | 118 | 285 | 2.52e-26 | 103 |
MS.gene99883.t1 | AT1G69080 | 34.706 | 170 | 96 | 5 | 66 | 224 | 44 | 209 | 5.11e-26 | 100 |
MS.gene99883.t1 | AT3G03290 | 34.503 | 171 | 96 | 4 | 67 | 224 | 107 | 274 | 1.47e-23 | 95.5 |
MS.gene99883.t1 | AT4G13450 | 25.728 | 206 | 105 | 4 | 66 | 224 | 15 | 219 | 7.69e-16 | 73.9 |
Find 53 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAACTCATGTTGTTAATA+AGG | 0.212222 | 3.2:-65237051 | MS.gene99883:CDS |
GCAGAAGAACTTCTGGCTTT+TGG | 0.227711 | 3.2:-65235914 | MS.gene99883:CDS |
ATTCTAAGCATGCAATGATT+TGG | 0.290584 | 3.2:-65237076 | MS.gene99883:CDS |
CTCATCACTGTGGCCAGTTT+AGG | 0.329869 | 3.2:+65236514 | None:intergenic |
ACTTACCTTGTTAATCATCT+TGG | 0.331349 | 3.2:-65236966 | MS.gene99883:CDS |
AGAAAGAAGATGGCTTCTTT+TGG | 0.334209 | 3.2:+65236452 | None:intergenic |
GATGAGCCAGGTAAAGAAAT+TGG | 0.339137 | 3.2:-65236497 | MS.gene99883:CDS |
CCAGGTGGCAGAAGAACTTC+TGG | 0.346204 | 3.2:-65235921 | MS.gene99883:CDS |
CTTACCTTGTTAATCATCTT+GGG | 0.346303 | 3.2:-65236965 | MS.gene99883:CDS |
TTCTAAGCATGCAATGATTT+GGG | 0.371229 | 3.2:-65237075 | MS.gene99883:CDS |
ACATACAACAACAATAGTTT+AGG | 0.386222 | 3.2:-65237221 | MS.gene99883:CDS |
GGGTTTAACATTAACATGTA+TGG | 0.388232 | 3.2:-65237164 | MS.gene99883:CDS |
CTTGGAAATCAACATCAAAT+AGG | 0.391956 | 3.2:-65237259 | MS.gene99883:CDS |
AAGAGAAGCCAAGGCAATAA+TGG | 0.394438 | 3.2:-65235958 | MS.gene99883:CDS |
AGCCATCTTCTTTCTTTAGC+TGG | 0.402605 | 3.2:-65236444 | MS.gene99883:intron |
AGAGTTATGGTTGTGGTTGA+TGG | 0.409544 | 3.2:-65237107 | MS.gene99883:CDS |
TGTAATTCAAGGACCTAAAC+TGG | 0.413139 | 3.2:-65236527 | MS.gene99883:CDS |
CAGCAGCACAGAGGAGTTTG+TGG | 0.433556 | 3.2:-65236025 | MS.gene99883:CDS |
CTAACTCATGTTGTTAATAA+GGG | 0.434772 | 3.2:-65237050 | MS.gene99883:CDS |
TCTGCCACCTGGTGCTGATA+AGG | 0.435349 | 3.2:+65235932 | None:intergenic |
AATGCTGAGTGCTTGACAAT+AGG | 0.444116 | 3.2:-65235988 | MS.gene99883:CDS |
TGAGACAAATCTGAGTCAAA+TGG | 0.450642 | 3.2:-65237189 | MS.gene99883:CDS |
TAAGGTAGCCATTATTGCCT+TGG | 0.456289 | 3.2:+65235950 | None:intergenic |
TAAGACTCAGAAGCACTTTG+AGG | 0.458252 | 3.2:+65236996 | None:intergenic |
TGGCTTGCAATCTTTGCAAA+GGG | 0.487254 | 3.2:+65236941 | None:intergenic |
GAAATTGGAGGTCTCTATCC+TGG | 0.499739 | 3.2:-65236482 | MS.gene99883:CDS |
GTGGAAGCACTTGTAATTCA+AGG | 0.506797 | 3.2:-65236538 | MS.gene99883:CDS |
AGACCTCCAATTTCTTTACC+TGG | 0.507576 | 3.2:+65236491 | None:intergenic |
CCAGAAGTTCTTCTGCCACC+TGG | 0.508759 | 3.2:+65235921 | None:intergenic |
TGGCCTGTCATAGGTGGAAG+TGG | 0.514126 | 3.2:-65236557 | MS.gene99883:intron |
CTGGCTTGCAATCTTTGCAA+AGG | 0.528141 | 3.2:+65236940 | None:intergenic |
TGAAGAGAGTTGTGGAATGA+TGG | 0.529080 | 3.2:-65237138 | MS.gene99883:CDS |
GAGGTCTCTATCCTGGTACT+TGG | 0.534821 | 3.2:-65236475 | MS.gene99883:CDS |
TACCAGCTAAAGAAAGAAGA+TGG | 0.539360 | 3.2:+65236442 | None:intergenic |
GATGGTGAGAAAGAGAGTTA+TGG | 0.559684 | 3.2:-65237120 | MS.gene99883:CDS |
ACTGGCCACAGTGATGAGCC+AGG | 0.573013 | 3.2:-65236509 | MS.gene99883:CDS |
AGTTAAGTTCAAAAGAGACT+TGG | 0.574008 | 3.2:-65237277 | MS.gene99883:CDS |
TCAACATCAAATAGGTGGAG+TGG | 0.576570 | 3.2:-65237251 | MS.gene99883:CDS |
ACAAATCTGAGTCAAATGGA+AGG | 0.584700 | 3.2:-65237185 | MS.gene99883:CDS |
CTGTTTGTTTACAGTCTCTG+TGG | 0.592127 | 3.2:-65236063 | MS.gene99883:intron |
GGAGTGAGGAAGAGAAGCCA+AGG | 0.601340 | 3.2:-65235967 | MS.gene99883:CDS |
CAAATCTGAGTCAAATGGAA+GGG | 0.609381 | 3.2:-65237184 | MS.gene99883:CDS |
GGAAATCAACATCAAATAGG+TGG | 0.613048 | 3.2:-65237256 | MS.gene99883:CDS |
CAGCAGCTGCAGCAGCACAG+AGG | 0.618197 | 3.2:-65236034 | MS.gene99883:CDS |
ATGGCTACCTTATCAGCACC+AGG | 0.619844 | 3.2:-65235939 | MS.gene99883:CDS |
TATGGAAATGAAGAGAGTTG+TGG | 0.622956 | 3.2:-65237146 | MS.gene99883:CDS |
GAGCCAGGTAAAGAAATTGG+AGG | 0.635543 | 3.2:-65236494 | MS.gene99883:CDS |
TTGCAAAGATTGCAAGCCAG+AGG | 0.640746 | 3.2:-65236937 | MS.gene99883:intron |
GAGAAAGAGAGTTATGGTTG+TGG | 0.642404 | 3.2:-65237114 | MS.gene99883:CDS |
CTTTACCTGGCTCATCACTG+TGG | 0.657425 | 3.2:+65236504 | None:intergenic |
GGGACCCAAGATGATTAACA+AGG | 0.679967 | 3.2:+65236961 | None:intergenic |
AGTGCTTGACAATAGGAGTG+AGG | 0.688153 | 3.2:-65235981 | MS.gene99883:CDS |
GCTACCTTATCAGCACCAGG+TGG | 0.765926 | 3.2:-65235936 | MS.gene99883:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGTAGGAAAATAATTTA+TGG | + | chr3.2:65236489-65236508 | None:intergenic | 15.0% |
!!! | ATTTTTTAAAACAAGACAAT+TGG | + | chr3.2:65237047-65237066 | None:intergenic | 15.0% |
!!! | TTTTTTAAAACAAGACAATT+GGG | + | chr3.2:65237046-65237065 | None:intergenic | 15.0% |
!! | AATTAGTTGAAAAGAGAAAA+AGG | + | chr3.2:65236457-65236476 | None:intergenic | 20.0% |
!! | AATTTACTATTGTCAATTAG+AGG | + | chr3.2:65236987-65237006 | None:intergenic | 20.0% |
!! | ATTAGTTGAAAAGAGAAAAA+GGG | + | chr3.2:65236456-65236475 | None:intergenic | 20.0% |
!!! | TTGTTCAATTGATAGTTAAT+TGG | - | chr3.2:65236401-65236420 | MS.gene99883:intron | 20.0% |
!!! | TTTTTAAAACAAGACAATTG+GGG | + | chr3.2:65237045-65237064 | None:intergenic | 20.0% |
! | AAAGGTTACTGATATTGTTA+TGG | - | chr3.2:65236637-65236656 | MS.gene99883:intron | 25.0% |
! | ACATACAACAACAATAGTTT+AGG | - | chr3.2:65235993-65236012 | MS.gene99883:CDS | 25.0% |
! | ACTAACTCATGTTGTTAATA+AGG | - | chr3.2:65236163-65236182 | MS.gene99883:intron | 25.0% |
! | CATCTAAAGAATAGAAAAGT+AGG | + | chr3.2:65236503-65236522 | None:intergenic | 25.0% |
! | CTAACTCATGTTGTTAATAA+GGG | - | chr3.2:65236164-65236183 | MS.gene99883:intron | 25.0% |
! | GAAAAGCTGAAAATAAAACA+AGG | + | chr3.2:65236562-65236581 | None:intergenic | 25.0% |
! | GATAGTTAATTGGAGTAATT+AGG | - | chr3.2:65236411-65236430 | MS.gene99883:intron | 25.0% |
! | TATCCTCAATACAAAGAAAA+AGG | - | chr3.2:65236619-65236638 | MS.gene99883:intron | 25.0% |
! | TTTCTTTGTATTGAGGATAA+GGG | + | chr3.2:65236618-65236637 | None:intergenic | 25.0% |
!! | CAATTTACAATTTTCAACAG+AGG | + | chr3.2:65236891-65236910 | None:intergenic | 25.0% |
!! | TAACCTTTTTCTTTGTATTG+AGG | + | chr3.2:65236625-65236644 | None:intergenic | 25.0% |
!! | TTTTCTTTGTATTGAGGATA+AGG | + | chr3.2:65236619-65236638 | None:intergenic | 25.0% |
!!! | ATACGTTTTTCTTGTTACTT+GGG | - | chr3.2:65237085-65237104 | MS.gene99883:CDS | 25.0% |
!!! | CTACTTTTCTATTCTTTAGA+TGG | - | chr3.2:65236501-65236520 | MS.gene99883:CDS | 25.0% |
ACTTACCTTGTTAATCATCT+TGG | - | chr3.2:65236248-65236267 | MS.gene99883:intron | 30.0% | |
AGTTAAGTTCAAAAGAGACT+TGG | - | chr3.2:65235937-65235956 | MS.gene99883:CDS | 30.0% | |
ATTCTAAGCATGCAATGATT+TGG | - | chr3.2:65236138-65236157 | MS.gene99883:intron | 30.0% | |
CTTACCTTGTTAATCATCTT+GGG | - | chr3.2:65236249-65236268 | MS.gene99883:intron | 30.0% | |
CTTGGAAATCAACATCAAAT+AGG | - | chr3.2:65235955-65235974 | MS.gene99883:CDS | 30.0% | |
GAAAAACGTATGACATCAAA+AGG | + | chr3.2:65237076-65237095 | None:intergenic | 30.0% | |
GGGTTTAACATTAACATGTA+TGG | - | chr3.2:65236050-65236069 | MS.gene99883:CDS | 30.0% | |
TGTTGTAAATTGCTTGTGTT+TGG | + | chr3.2:65236811-65236830 | None:intergenic | 30.0% | |
TTCTAAGCATGCAATGATTT+GGG | - | chr3.2:65236139-65236158 | MS.gene99883:intron | 30.0% | |
TTCTTTGTATTGAGGATAAG+GGG | + | chr3.2:65236617-65236636 | None:intergenic | 30.0% | |
! | CATACGTTTTTCTTGTTACT+TGG | - | chr3.2:65237084-65237103 | MS.gene99883:CDS | 30.0% |
ACAAATCTGAGTCAAATGGA+AGG | - | chr3.2:65236029-65236048 | MS.gene99883:CDS | 35.0% | |
ATATTGTTATGGCCTGTCAT+AGG | - | chr3.2:65236648-65236667 | MS.gene99883:intron | 35.0% | |
CAAATCTGAGTCAAATGGAA+GGG | - | chr3.2:65236030-65236049 | MS.gene99883:CDS | 35.0% | |
CTCAAAAATGAAGCTGAACT+TGG | + | chr3.2:65235915-65235934 | None:intergenic | 35.0% | |
GGAAATCAACATCAAATAGG+TGG | - | chr3.2:65235958-65235977 | MS.gene99883:CDS | 35.0% | |
TACACTTAGCTGACATATCA+TGG | + | chr3.2:65236933-65236952 | None:intergenic | 35.0% | |
TACCAGCTAAAGAAAGAAGA+TGG | + | chr3.2:65236775-65236794 | None:intergenic | 35.0% | |
TATGGAAATGAAGAGAGTTG+TGG | - | chr3.2:65236068-65236087 | MS.gene99883:intron | 35.0% | |
TCCATGATATGTCAGTTAAG+TGG | - | chr3.2:65236832-65236851 | MS.gene99883:intron | 35.0% | |
TCTTTGTATTGAGGATAAGG+GGG | + | chr3.2:65236616-65236635 | None:intergenic | 35.0% | |
TGAGACAAATCTGAGTCAAA+TGG | - | chr3.2:65236025-65236044 | MS.gene99883:CDS | 35.0% | |
TGTAATTCAAGGACCTAAAC+TGG | - | chr3.2:65236687-65236706 | MS.gene99883:intron | 35.0% | |
! | AGAAAGAAGATGGCTTCTTT+TGG | + | chr3.2:65236765-65236784 | None:intergenic | 35.0% |
!! | CAAGTTCAGCTTCATTTTTG+AGG | - | chr3.2:65235913-65235932 | MS.gene99883:CDS | 35.0% |
AAACAAGACAATTGGGGTGA+TGG | + | chr3.2:65237039-65237058 | None:intergenic | 40.0% | |
AAGAGAAGCCAAGGCAATAA+TGG | - | chr3.2:65237256-65237275 | MS.gene99883:CDS | 40.0% | |
AATGCTGAGTGCTTGACAAT+AGG | - | chr3.2:65237226-65237245 | MS.gene99883:CDS | 40.0% | |
AGACCTCCAATTTCTTTACC+TGG | + | chr3.2:65236726-65236745 | None:intergenic | 40.0% | |
AGAGTTATGGTTGTGGTTGA+TGG | - | chr3.2:65236107-65236126 | MS.gene99883:intron | 40.0% | |
AGCCATCTTCTTTCTTTAGC+TGG | - | chr3.2:65236770-65236789 | MS.gene99883:intron | 40.0% | |
CTGTTTGTTTACAGTCTCTG+TGG | - | chr3.2:65237151-65237170 | MS.gene99883:CDS | 40.0% | |
GAGAAAGAGAGTTATGGTTG+TGG | - | chr3.2:65236100-65236119 | MS.gene99883:intron | 40.0% | |
GATGAGCCAGGTAAAGAAAT+TGG | - | chr3.2:65236717-65236736 | MS.gene99883:intron | 40.0% | |
GATGGTGAGAAAGAGAGTTA+TGG | - | chr3.2:65236094-65236113 | MS.gene99883:intron | 40.0% | |
GCCACTTAACTGACATATCA+TGG | + | chr3.2:65236836-65236855 | None:intergenic | 40.0% | |
TAAGGTAGCCATTATTGCCT+TGG | + | chr3.2:65237267-65237286 | None:intergenic | 40.0% | |
TCAACATCAAATAGGTGGAG+TGG | - | chr3.2:65235963-65235982 | MS.gene99883:CDS | 40.0% | |
TGAAGAGAGTTGTGGAATGA+TGG | - | chr3.2:65236076-65236095 | MS.gene99883:intron | 40.0% | |
! | TGGCTTGCAATCTTTGCAAA+GGG | + | chr3.2:65236276-65236295 | None:intergenic | 40.0% |
!! | GTGGAAGCACTTGTAATTCA+AGG | - | chr3.2:65236676-65236695 | MS.gene99883:intron | 40.0% |
!! | TAAGACTCAGAAGCACTTTG+AGG | + | chr3.2:65236221-65236240 | None:intergenic | 40.0% |
AAACCACACCAAGTTACCTC+TGG | + | chr3.2:65236296-65236315 | None:intergenic | 45.0% | |
AGTGCTTGACAATAGGAGTG+AGG | - | chr3.2:65237233-65237252 | MS.gene99883:CDS | 45.0% | |
ATTGCAAGCCAGAGGTAACT+TGG | - | chr3.2:65236285-65236304 | MS.gene99883:intron | 45.0% | |
GAAATTGGAGGTCTCTATCC+TGG | - | chr3.2:65236732-65236751 | MS.gene99883:intron | 45.0% | |
GAGCCAGGTAAAGAAATTGG+AGG | - | chr3.2:65236720-65236739 | MS.gene99883:intron | 45.0% | |
GGGACCCAAGATGATTAACA+AGG | + | chr3.2:65236256-65236275 | None:intergenic | 45.0% | |
TTGCAAAGATTGCAAGCCAG+AGG | - | chr3.2:65236277-65236296 | MS.gene99883:intron | 45.0% | |
TTGTTATGGCCTGTCATAGG+TGG | - | chr3.2:65236651-65236670 | MS.gene99883:intron | 45.0% | |
! | CTGGCTTGCAATCTTTGCAA+AGG | + | chr3.2:65236277-65236296 | None:intergenic | 45.0% |
!!! | GCAGAAGAACTTCTGGCTTT+TGG | - | chr3.2:65237300-65237319 | MS.gene99883:CDS | 45.0% |
ATGGCTACCTTATCAGCACC+AGG | - | chr3.2:65237275-65237294 | MS.gene99883:CDS | 50.0% | |
CTCATCACTGTGGCCAGTTT+AGG | + | chr3.2:65236703-65236722 | None:intergenic | 50.0% | |
CTTCCACTTCCACCTATGAC+AGG | + | chr3.2:65236663-65236682 | None:intergenic | 50.0% | |
CTTTACCTGGCTCATCACTG+TGG | + | chr3.2:65236713-65236732 | None:intergenic | 50.0% | |
GAGGTCTCTATCCTGGTACT+TGG | - | chr3.2:65236739-65236758 | MS.gene99883:intron | 50.0% | |
! | AAGCCAGAGGTAACTTGGTG+TGG | - | chr3.2:65236290-65236309 | MS.gene99883:intron | 50.0% |
! | GCTTCTTTTGGCCAAGTACC+AGG | + | chr3.2:65236753-65236772 | None:intergenic | 50.0% |
CAGCAGCACAGAGGAGTTTG+TGG | - | chr3.2:65237189-65237208 | MS.gene99883:CDS | 55.0% | |
CCAGAAGTTCTTCTGCCACC+TGG | + | chr3.2:65237296-65237315 | None:intergenic | 55.0% | |
CCAGGTGGCAGAAGAACTTC+TGG | - | chr3.2:65237293-65237312 | MS.gene99883:CDS | 55.0% | |
GCTACCTTATCAGCACCAGG+TGG | - | chr3.2:65237278-65237297 | MS.gene99883:CDS | 55.0% | |
GGAGTGAGGAAGAGAAGCCA+AGG | - | chr3.2:65237247-65237266 | MS.gene99883:CDS | 55.0% | |
TGGCCTGTCATAGGTGGAAG+TGG | - | chr3.2:65236657-65236676 | MS.gene99883:intron | 55.0% | |
!! | TCTGCCACCTGGTGCTGATA+AGG | + | chr3.2:65237285-65237304 | None:intergenic | 55.0% |
ACTGGCCACAGTGATGAGCC+AGG | - | chr3.2:65236705-65236724 | MS.gene99883:intron | 60.0% | |
CAGCAGCTGCAGCAGCACAG+AGG | - | chr3.2:65237180-65237199 | MS.gene99883:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 65235909 | 65237327 | 65235909 | ID=MS.gene99883 |
chr3.2 | mRNA | 65235909 | 65237327 | 65235909 | ID=MS.gene99883.t1;Parent=MS.gene99883 |
chr3.2 | exon | 65236938 | 65237327 | 65236938 | ID=MS.gene99883.t1.exon1;Parent=MS.gene99883.t1 |
chr3.2 | CDS | 65236938 | 65237327 | 65236938 | ID=cds.MS.gene99883.t1;Parent=MS.gene99883.t1 |
chr3.2 | exon | 65236445 | 65236566 | 65236445 | ID=MS.gene99883.t1.exon2;Parent=MS.gene99883.t1 |
chr3.2 | CDS | 65236445 | 65236566 | 65236445 | ID=cds.MS.gene99883.t1;Parent=MS.gene99883.t1 |
chr3.2 | exon | 65235909 | 65236071 | 65235909 | ID=MS.gene99883.t1.exon3;Parent=MS.gene99883.t1 |
chr3.2 | CDS | 65235909 | 65236071 | 65235909 | ID=cds.MS.gene99883.t1;Parent=MS.gene99883.t1 |
Gene Sequence |
Protein sequence |