Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99929.t1 | BBG98627.1 | 80 | 439 | 81 | 2 | 1 | 432 | 1 | 439 | 3.00E-185 | 658.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99929.t1 | P10978 | 34.4 | 451 | 268 | 11 | 7 | 436 | 5 | 448 | 7.2e-63 | 243.0 |
| MS.gene99929.t1 | P10978 | 36.6 | 216 | 108 | 5 | 314 | 509 | 935 | 1141 | 1.2e-25 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99929.t1 | A0A4Y1R3K4 | 80.0 | 439 | 81 | 2 | 1 | 432 | 1 | 439 | 2.2e-185 | 658.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05615 | MS.gene99929 | 0.839187 | 1.84E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99929.t1 | MTR_2g039140 | 40.217 | 184 | 77 | 2 | 1 | 183 | 120 | 271 | 4.38e-31 | 122 |
| MS.gene99929.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 8.64e-19 | 80.9 |
| MS.gene99929.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 275 | 418 | 103 | 252 | 6.26e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99929.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 9.34e-30 | 113 |
Find 121 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAACTGAACTTAAT+TGG | 0.095422 | 4.2:+57007360 | None:intergenic |
| AATTCTTGAACAATTCTTTC+TGG | 0.139133 | 4.2:+57006850 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 4.2:+57005728 | None:intergenic |
| CTGAGAACTACGATGATTTC+TGG | 0.189947 | 4.2:+57007076 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 4.2:+57007620 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 4.2:+57006987 | None:intergenic |
| CAACGGCGTGCTAACCGTTT+TGG | 0.273605 | 4.2:+57005771 | None:intergenic |
| ACTACGATGATTTCTGGATT+TGG | 0.314338 | 4.2:+57007082 | None:intergenic |
| TGACGCGTTGATATGTTCTT+TGG | 0.328692 | 4.2:-57006928 | MS.gene99929:CDS |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 4.2:-57005679 | MS.gene99929:CDS |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 4.2:+57005676 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 4.2:+57006988 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 4.2:-57007706 | MS.gene99929:CDS |
| GATACCAACTGAACTTAATT+GGG | 0.381678 | 4.2:+57007361 | None:intergenic |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 4.2:+57006516 | None:intergenic |
| ATTTCTGGATTTGGATCGTC+TGG | 0.389287 | 4.2:+57007091 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 4.2:-57006527 | MS.gene99929:CDS |
| ATTCTTGAACAATTCTTTCT+GGG | 0.401861 | 4.2:+57006851 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.404400 | 4.2:-57007304 | MS.gene99929:CDS |
| ACAGTAGCGCTCCAACTATC+TGG | 0.408688 | 4.2:+57007293 | None:intergenic |
| AGAAATTCAACCAGAGGAAA+TGG | 0.417568 | 4.2:-57007131 | MS.gene99929:CDS |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 4.2:-57006796 | MS.gene99929:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 4.2:+57005684 | None:intergenic |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 4.2:+57005625 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 4.2:+57005551 | None:intergenic |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 4.2:-57006749 | MS.gene99929:CDS |
| ATGCAGTGGGAGTTGTTAGC+AGG | 0.430599 | 4.2:-57005612 | MS.gene99929:CDS |
| ATTTGATGATGTTCGTGATC+TGG | 0.433721 | 4.2:-57007231 | MS.gene99929:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 4.2:-57006790 | MS.gene99929:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 4.2:+57006670 | None:intergenic |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 4.2:+57005729 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 4.2:-57007197 | MS.gene99929:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 4.2:-57006957 | MS.gene99929:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 4.2:-57006759 | MS.gene99929:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 4.2:-57006907 | MS.gene99929:CDS |
| CAGTCTTCCACGGTGATGAT+TGG | 0.449152 | 4.2:-57006644 | MS.gene99929:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 4.2:-57007713 | MS.gene99929:CDS |
| GAACAATTCTTTCTGGGAAG+TGG | 0.458349 | 4.2:+57006857 | None:intergenic |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 4.2:-57006513 | MS.gene99929:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 4.2:-57006495 | MS.gene99929:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 4.2:+57007467 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 4.2:-57006758 | MS.gene99929:CDS |
| TAAACTTTACCAAGGTTACC+AGG | 0.478940 | 4.2:+57006822 | None:intergenic |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 4.2:+57006547 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 4.2:+57006799 | None:intergenic |
| TTTACCACGTCCATTTCCTC+TGG | 0.487326 | 4.2:+57007121 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 4.2:-57006816 | MS.gene99929:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 4.2:-57006496 | MS.gene99929:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 4.2:-57006789 | MS.gene99929:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 4.2:-57006908 | MS.gene99929:CDS |
| TCTATCGAGTGTTGGAATTG+TGG | 0.512167 | 4.2:-57007044 | MS.gene99929:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.514140 | 4.2:-57006630 | MS.gene99929:CDS |
| CGCGTCACCTCCTCCTGAGG+TGG | 0.515832 | 4.2:+57006944 | None:intergenic |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 4.2:-57006894 | MS.gene99929:CDS |
| AATTATGTCCCTGGTAACCT+TGG | 0.520579 | 4.2:-57006831 | MS.gene99929:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 4.2:-57005785 | MS.gene99929:CDS |
| CACAGCTGTGAGTAGCTCCT+CGG | 0.527844 | 4.2:-57007270 | MS.gene99929:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 4.2:+57005734 | None:intergenic |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 4.2:-57006487 | MS.gene99929:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 4.2:+57006677 | None:intergenic |
| ACAGCTGTGAGTAGCTCCTC+GGG | 0.532462 | 4.2:-57007269 | MS.gene99929:CDS |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 4.2:-57006685 | MS.gene99929:CDS |
| TAGCGCTCCAACTATCTGGT+AGG | 0.539026 | 4.2:+57007297 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 4.2:-57007627 | MS.gene99929:CDS |
| TGTTGGAATTGTGGAAAGAC+GGG | 0.540082 | 4.2:-57007035 | MS.gene99929:CDS |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 4.2:-57007198 | MS.gene99929:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 4.2:-57006576 | MS.gene99929:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 4.2:-57007457 | MS.gene99929:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 4.2:-57006783 | MS.gene99929:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 4.2:-57005626 | MS.gene99929:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 4.2:-57005625 | MS.gene99929:CDS |
| AACCACAGCTGGTCTTATGA+AGG | 0.557775 | 4.2:-57007513 | MS.gene99929:CDS |
| GCAAAAGAGAAAACCACAGC+TGG | 0.558016 | 4.2:-57007524 | MS.gene99929:CDS |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 4.2:-57006748 | MS.gene99929:CDS |
| ACTCGAAATCTATCGAGTGT+TGG | 0.561027 | 4.2:-57007052 | MS.gene99929:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 4.2:-57007725 | MS.gene99929:CDS |
| GTGTTGGAATTGTGGAAAGA+CGG | 0.567490 | 4.2:-57007036 | MS.gene99929:CDS |
| CTCTGTATGCAATACTGAAG+AGG | 0.567853 | 4.2:+57007163 | None:intergenic |
| ACAACCCAATTAAGTTCAGT+TGG | 0.568124 | 4.2:-57007365 | MS.gene99929:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 4.2:-57006951 | MS.gene99929:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.574626 | 4.2:-57005659 | MS.gene99929:CDS |
| TTTACACTTCGGATGACAGA+AGG | 0.576141 | 4.2:-57007428 | MS.gene99929:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 4.2:+57005614 | None:intergenic |
| TTGTTCAAGAATTATGTCCC+TGG | 0.586171 | 4.2:-57006840 | MS.gene99929:CDS |
| AGCCTTCATAAGACCAGCTG+TGG | 0.586581 | 4.2:+57007511 | None:intergenic |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 4.2:-57007417 | MS.gene99929:CDS |
| AGCGCTCCAACTATCTGGTA+GGG | 0.594325 | 4.2:+57007298 | None:intergenic |
| AAATGGACGTGGTAAATCAA+AGG | 0.596335 | 4.2:-57007114 | MS.gene99929:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 4.2:-57007208 | MS.gene99929:CDS |
| TGAGGCGGTTGTTTACACTT+CGG | 0.598027 | 4.2:-57007439 | MS.gene99929:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.598084 | 4.2:-57006919 | MS.gene99929:CDS |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 4.2:-57007454 | MS.gene99929:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 4.2:-57005728 | MS.gene99929:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 4.2:-57007590 | MS.gene99929:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 4.2:-57006954 | MS.gene99929:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 4.2:-57007616 | MS.gene99929:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 4.2:-57007720 | MS.gene99929:CDS |
| GGCTACACAACAGTCTTCCA+CGG | 0.609498 | 4.2:-57006654 | MS.gene99929:CDS |
| GTTTGTACGAGGCCAGACAT+TGG | 0.610646 | 4.2:-57005637 | MS.gene99929:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 4.2:+57007591 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 4.2:-57007747 | MS.gene99929:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 4.2:+57006814 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 4.2:-57007752 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 4.2:-57006979 | MS.gene99929:CDS |
| ATTCACCCAACTCTCTCCGT+CGG | 0.627014 | 4.2:+57007192 | None:intergenic |
| CAACGCGTCACCTCCTCCTG+AGG | 0.630580 | 4.2:+57006941 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.639552 | 4.2:-57007345 | MS.gene99929:CDS |
| CAAAACGGTTAGCACGCCGT+TGG | 0.641075 | 4.2:-57005770 | MS.gene99929:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 4.2:-57005725 | MS.gene99929:CDS |
| AGAGGAAGAAATTCAACCAG+AGG | 0.643795 | 4.2:-57007137 | MS.gene99929:CDS |
| AAACTTTACCAAGGTTACCA+GGG | 0.648516 | 4.2:+57006823 | None:intergenic |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 4.2:-57006597 | MS.gene99929:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 4.2:-57006675 | MS.gene99929:CDS |
| TCAACCAGAGGAAATGGACG+TGG | 0.665050 | 4.2:-57007125 | MS.gene99929:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 4.2:-57006991 | MS.gene99929:CDS |
| AAATCTTCCAATCATCACCG+TGG | 0.678539 | 4.2:+57006637 | None:intergenic |
| GTATTGCATACAGAGTCAAG+AGG | 0.682691 | 4.2:-57007155 | MS.gene99929:CDS |
| AGGCGAAAATGACTTGCCAA+CGG | 0.689012 | 4.2:+57005754 | None:intergenic |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 4.2:-57006494 | MS.gene99929:CDS |
| TGTACGCAATGGTTTGTACG+AGG | 0.697128 | 4.2:-57005648 | MS.gene99929:CDS |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 4.2:-57006609 | MS.gene99929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr4.2:57006549-57006568 | MS.gene99929:CDS | 20.0% |
| ! | AATTCTTGAACAATTCTTTC+TGG | + | chr4.2:57006460-57006479 | None:intergenic | 25.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr4.2:57006893-57006912 | MS.gene99929:CDS | 25.0% |
| ! | ATTCTTGAACAATTCTTTCT+GGG | + | chr4.2:57006459-57006478 | None:intergenic | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr4.2:57005850-57005869 | MS.gene99929:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr4.2:57006780-57006799 | MS.gene99929:CDS | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr4.2:57006548-57006567 | MS.gene99929:CDS | 25.0% |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr4.2:57005853-57005872 | MS.gene99929:intron | 30.0% | |
| GATACCAACTGAACTTAATT+GGG | + | chr4.2:57005949-57005968 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr4.2:57006677-57006696 | MS.gene99929:CDS | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr4.2:57005582-57005601 | MS.gene99929:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr4.2:57006511-57006530 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr4.2:57006511-57006530 | MS.gene99929:CDS | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr4.2:57006763-57006782 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr4.2:57007508-57007527 | MS.gene99929:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr4.2:57005843-57005862 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr4.2:57007507-57007526 | MS.gene99929:CDS | 30.0% |
| AAACTTTACCAAGGTTACCA+GGG | + | chr4.2:57006487-57006506 | None:intergenic | 35.0% | |
| AAAGAAACCAGAATCGATGA+AGG | - | chr4.2:57005680-57005699 | MS.gene99929:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr4.2:57006193-57006212 | MS.gene99929:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr4.2:57006491-57006510 | MS.gene99929:CDS | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr4.2:57006855-57006874 | MS.gene99929:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr4.2:57006794-57006813 | MS.gene99929:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr4.2:57006794-57006813 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr4.2:57005587-57005606 | MS.gene99929:CDS | 35.0% | |
| ACAACCCAATTAAGTTCAGT+TGG | - | chr4.2:57005942-57005961 | MS.gene99929:intron | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr4.2:57006614-57006633 | MS.gene99929:CDS | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr4.2:57006176-57006195 | MS.gene99929:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr4.2:57006926-57006945 | MS.gene99929:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr4.2:57007113-57007132 | MS.gene99929:CDS | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr4.2:57007448-57007467 | MS.gene99929:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr4.2:57007276-57007295 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr4.2:57006836-57006855 | MS.gene99929:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr4.2:57006811-57006830 | MS.gene99929:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr4.2:57007628-57007647 | MS.gene99929:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr4.2:57006869-57006888 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr4.2:57007141-57007160 | MS.gene99929:CDS | 35.0% | |
| CGATACCAACTGAACTTAAT+TGG | + | chr4.2:57005950-57005969 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr4.2:57006518-57006537 | MS.gene99929:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr4.2:57006294-57006313 | MS.gene99929:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr4.2:57007397-57007416 | MS.gene99929:CDS | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr4.2:57007390-57007409 | MS.gene99929:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+AGG | + | chr4.2:57006488-57006507 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr4.2:57006517-57006536 | MS.gene99929:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr4.2:57006812-57006831 | MS.gene99929:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr4.2:57006496-57006515 | None:intergenic | 35.0% | |
| TTGTTCAAGAATTATGTCCC+TGG | - | chr4.2:57006467-57006486 | MS.gene99929:intron | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr4.2:57006228-57006247 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr4.2:57006608-57006627 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr4.2:57006609-57006628 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr4.2:57006559-57006578 | MS.gene99929:CDS | 35.0% |
| !! | ATTTGATGATGTTCGTGATC+TGG | - | chr4.2:57006076-57006095 | MS.gene99929:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr4.2:57007328-57007347 | MS.gene99929:CDS | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr4.2:57006558-57006577 | MS.gene99929:CDS | 35.0% |
| AAATCTTCCAATCATCACCG+TGG | + | chr4.2:57006673-57006692 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr4.2:57007208-57007227 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr4.2:57005691-57005710 | MS.gene99929:CDS | 40.0% | |
| AATTATGTCCCTGGTAACCT+TGG | - | chr4.2:57006476-57006495 | MS.gene99929:intron | 40.0% | |
| ACTCGAAATCTATCGAGTGT+TGG | - | chr4.2:57006255-57006274 | MS.gene99929:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr4.2:57006170-57006189 | MS.gene99929:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr4.2:57007169-57007188 | MS.gene99929:CDS | 40.0% | |
| CTCTGTATGCAATACTGAAG+AGG | + | chr4.2:57006147-57006166 | None:intergenic | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr4.2:57006234-57006253 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr4.2:57007634-57007653 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr4.2:57007272-57007291 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr4.2:57007600-57007619 | MS.gene99929:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr4.2:57007066-57007085 | MS.gene99929:CDS | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr4.2:57007418-57007437 | MS.gene99929:CDS | 40.0% | |
| GTATTGCATACAGAGTCAAG+AGG | - | chr4.2:57006152-57006171 | MS.gene99929:intron | 40.0% | |
| GTGTTGGAATTGTGGAAAGA+CGG | - | chr4.2:57006271-57006290 | MS.gene99929:intron | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr4.2:57007225-57007244 | MS.gene99929:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr4.2:57006813-57006832 | MS.gene99929:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr4.2:57006820-57006839 | MS.gene99929:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr4.2:57007402-57007421 | MS.gene99929:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr4.2:57007104-57007123 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr4.2:57007626-57007645 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr4.2:57007648-57007667 | MS.gene99929:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+GGG | - | chr4.2:57006272-57006291 | MS.gene99929:intron | 40.0% | |
| TTTACACTTCGGATGACAGA+AGG | - | chr4.2:57005879-57005898 | MS.gene99929:intron | 40.0% | |
| ! | ATTTCTGGATTTGGATCGTC+TGG | + | chr4.2:57006219-57006238 | None:intergenic | 40.0% |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr4.2:57006613-57006632 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr4.2:57007127-57007146 | None:intergenic | 40.0% |
| ! | GAACAATTCTTTCTGGGAAG+TGG | + | chr4.2:57006453-57006472 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr4.2:57006388-57006407 | MS.gene99929:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr4.2:57006820-57006839 | None:intergenic | 40.0% |
| ! | TGACGCGTTGATATGTTCTT+TGG | - | chr4.2:57006379-57006398 | MS.gene99929:intron | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr4.2:57005962-57005981 | MS.gene99929:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr4.2:57006057-57006076 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr4.2:57005690-57005709 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr4.2:57006263-57006282 | MS.gene99929:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr4.2:57005672-57005691 | None:intergenic | 40.0% |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr4.2:57006943-57006962 | MS.gene99929:CDS | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr4.2:57005719-57005738 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr4.2:57007579-57007598 | MS.gene99929:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr4.2:57005717-57005736 | MS.gene99929:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr4.2:57007229-57007248 | MS.gene99929:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr4.2:57006328-57006347 | MS.gene99929:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr4.2:57007576-57007595 | None:intergenic | 45.0% | |
| GCAAAAGAGAAAACCACAGC+TGG | - | chr4.2:57005783-57005802 | MS.gene99929:CDS | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr4.2:57006731-57006750 | MS.gene99929:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr4.2:57007149-57007168 | MS.gene99929:CDS | 45.0% | |
| TCGAACCTTTCGTCAAACCA+CGG | + | chr4.2:57006973-57006992 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr4.2:57006322-57006341 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr4.2:57006524-57006543 | MS.gene99929:CDS | 45.0% | |
| TGAGGCGGTTGTTTACACTT+CGG | - | chr4.2:57005868-57005887 | MS.gene99929:intron | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr4.2:57006003-57006022 | MS.gene99929:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr4.2:57006323-57006342 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr4.2:57006099-57006118 | MS.gene99929:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr4.2:57006189-57006208 | None:intergenic | 45.0% | |
| ! | AGGCGAAAATGACTTGCCAA+CGG | + | chr4.2:57007556-57007575 | None:intergenic | 45.0% |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr4.2:57007581-57007600 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr4.2:57007595-57007614 | None:intergenic | 45.0% |
| ! | TGTACGCAATGGTTTGTACG+AGG | - | chr4.2:57007659-57007678 | MS.gene99929:CDS | 45.0% |
| !! | AACCACAGCTGGTCTTATGA+AGG | - | chr4.2:57005794-57005813 | MS.gene99929:CDS | 45.0% |
| AAACCACGGCTCTCCTTCTT+TGG | + | chr4.2:57006959-57006978 | None:intergenic | 50.0% | |
| AACCACGGCTCTCCTTCTTT+GGG | + | chr4.2:57006958-57006977 | None:intergenic | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr4.2:57005594-57005613 | MS.gene99929:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr4.2:57007258-57007277 | None:intergenic | 50.0% | |
| ACAGTAGCGCTCCAACTATC+TGG | + | chr4.2:57006017-57006036 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr4.2:57007582-57007601 | MS.gene99929:CDS | 50.0% | |
| AGCCTTCATAAGACCAGCTG+TGG | + | chr4.2:57005799-57005818 | None:intergenic | 50.0% | |
| AGCGCTCCAACTATCTGGTA+GGG | + | chr4.2:57006012-57006031 | None:intergenic | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr4.2:57006710-57006729 | MS.gene99929:CDS | 50.0% | |
| ATGCAGTGGGAGTTGTTAGC+AGG | - | chr4.2:57007695-57007714 | MS.gene99929:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr4.2:57007188-57007207 | MS.gene99929:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr4.2:57006118-57006137 | None:intergenic | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr4.2:57007522-57007541 | MS.gene99929:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr4.2:57006663-57006682 | MS.gene99929:CDS | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr4.2:57006622-57006641 | MS.gene99929:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr4.2:57006413-57006432 | MS.gene99929:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr4.2:57007088-57007107 | MS.gene99929:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr4.2:57006316-57006335 | MS.gene99929:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr4.2:57006400-57006419 | MS.gene99929:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr4.2:57006653-57006672 | MS.gene99929:CDS | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr4.2:57006974-57006993 | MS.gene99929:CDS | 50.0% | |
| GTTTGTACGAGGCCAGACAT+TGG | - | chr4.2:57007670-57007689 | MS.gene99929:CDS | 50.0% | |
| TAGCGCTCCAACTATCTGGT+AGG | + | chr4.2:57006013-57006032 | None:intergenic | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr4.2:57006182-57006201 | MS.gene99929:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr4.2:57007002-57007021 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr4.2:57007194-57007213 | MS.gene99929:CDS | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr4.2:57007696-57007715 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr4.2:57006399-57006418 | MS.gene99929:intron | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr4.2:57007042-57007061 | MS.gene99929:CDS | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr4.2:57006353-57006372 | MS.gene99929:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr4.2:57007195-57007214 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr4.2:57007582-57007601 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr4.2:57006350-57006369 | MS.gene99929:intron | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr4.2:57005601-57005620 | MS.gene99929:CDS | 50.0% |
| ACAGCTGTGAGTAGCTCCTC+GGG | - | chr4.2:57006038-57006057 | MS.gene99929:intron | 55.0% | |
| ACCACGGCTCTCCTTCTTTG+GGG | + | chr4.2:57006957-57006976 | None:intergenic | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr4.2:57006109-57006128 | MS.gene99929:intron | 55.0% | |
| CAAAACGGTTAGCACGCCGT+TGG | - | chr4.2:57007537-57007556 | MS.gene99929:CDS | 55.0% | |
| CACAGCTGTGAGTAGCTCCT+CGG | - | chr4.2:57006037-57006056 | MS.gene99929:intron | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr4.2:57007682-57007701 | MS.gene99929:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr4.2:57007014-57007033 | MS.gene99929:CDS | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr4.2:57007017-57007036 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr4.2:57007017-57007036 | MS.gene99929:CDS | 55.0% | |
| GAGAGCCGTGGTTTGACGAA+AGG | - | chr4.2:57006965-57006984 | MS.gene99929:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr4.2:57006110-57006129 | MS.gene99929:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr4.2:57006996-57007015 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr4.2:57006698-57006717 | MS.gene99929:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr4.2:57006640-57006659 | None:intergenic | 55.0% | |
| ! | CAACGGCGTGCTAACCGTTT+TGG | + | chr4.2:57007539-57007558 | None:intergenic | 55.0% |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr4.2:57005890-57005909 | MS.gene99929:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr4.2:57006633-57006652 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr4.2:57007025-57007044 | None:intergenic | 60.0% | |
| ACCCCAAAGAAGGAGAGCCG+TGG | - | chr4.2:57006953-57006972 | MS.gene99929:CDS | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr4.2:57007049-57007068 | None:intergenic | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr4.2:57007685-57007704 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr4.2:57007020-57007039 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr4.2:57007681-57007700 | MS.gene99929:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr4.2:57006632-57006651 | MS.gene99929:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr4.2:57006356-57006375 | MS.gene99929:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr4.2:57007045-57007064 | MS.gene99929:CDS | 60.0% | |
| CAACGCGTCACCTCCTCCTG+AGG | + | chr4.2:57006369-57006388 | None:intergenic | 65.0% | |
| CGCGTCACCTCCTCCTGAGG+TGG | + | chr4.2:57006366-57006385 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 57005561 | 57007768 | 57005561 | ID=MS.gene99929 |
| chr4.2 | mRNA | 57005561 | 57007768 | 57005561 | ID=MS.gene99929.t1;Parent=MS.gene99929 |
| chr4.2 | exon | 57006488 | 57007768 | 57006488 | ID=MS.gene99929.t1.exon1;Parent=MS.gene99929.t1 |
| chr4.2 | CDS | 57006488 | 57007768 | 57006488 | ID=cds.MS.gene99929.t1;Parent=MS.gene99929.t1 |
| chr4.2 | exon | 57005561 | 57005848 | 57005561 | ID=MS.gene99929.t1.exon2;Parent=MS.gene99929.t1 |
| chr4.2 | CDS | 57005561 | 57005848 | 57005561 | ID=cds.MS.gene99929.t1;Parent=MS.gene99929.t1 |
| Gene Sequence |
| Protein sequence |
