Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047787.01.T01 | XP_003626371.2 | 89.655 | 290 | 10 | 1 | 5 | 274 | 426 | 715 | 1.12E-180 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047787.01.T01 | Q9ZVN2 | 57.732 | 291 | 98 | 5 | 6 | 274 | 417 | 704 | 2.98E-110 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047787.01.T01 | G7L0R8 | 89.655 | 290 | 10 | 1 | 5 | 274 | 426 | 715 | 0.0 | 525 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047786.01 | MsG0080047787.01 | 0.916832 | 1.108024e-85 | 3.103177e-81 |
| MsG0080047787.01 | MsG0480021859.01 | -0.806099 | 9.697004e-50 | 5.217892e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047787.01.T01 | MTR_7g114340 | 89.655 | 290 | 10 | 1 | 5 | 274 | 426 | 715 | 0.0 | 525 |
| MsG0080047787.01.T01 | MTR_7g083200 | 53.584 | 293 | 113 | 3 | 2 | 273 | 406 | 696 | 2.47e-103 | 316 |
| MsG0080047787.01.T01 | MTR_7g083130 | 51.903 | 289 | 118 | 2 | 5 | 273 | 263 | 550 | 3.29e-97 | 296 |
| MsG0080047787.01.T01 | MTR_7g083130 | 51.903 | 289 | 118 | 2 | 5 | 273 | 291 | 578 | 5.86e-97 | 296 |
| MsG0080047787.01.T01 | MTR_7g083130 | 51.903 | 289 | 118 | 2 | 5 | 273 | 383 | 670 | 6.06e-96 | 296 |
| MsG0080047787.01.T01 | MTR_7g083180 | 47.751 | 289 | 115 | 3 | 5 | 273 | 293 | 565 | 6.28e-85 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047787.01.T01 | AT1G54570 | 57.732 | 291 | 98 | 5 | 6 | 274 | 417 | 704 | 3.04e-111 | 336 |
| MsG0080047787.01.T01 | AT5G41120 | 47.766 | 291 | 131 | 2 | 2 | 272 | 311 | 600 | 1.54e-93 | 288 |
| MsG0080047787.01.T01 | AT5G41120 | 47.766 | 291 | 131 | 2 | 2 | 272 | 395 | 684 | 8.54e-93 | 288 |
| MsG0080047787.01.T01 | AT5G41120 | 47.766 | 291 | 131 | 2 | 2 | 272 | 390 | 679 | 9.87e-93 | 288 |
| MsG0080047787.01.T01 | AT5G41130 | 48.110 | 291 | 130 | 2 | 2 | 272 | 394 | 683 | 2.91e-92 | 287 |
| MsG0080047787.01.T01 | AT5G41130 | 48.110 | 291 | 130 | 2 | 2 | 272 | 417 | 706 | 2.95e-92 | 287 |
| MsG0080047787.01.T01 | AT3G26840 | 52.397 | 292 | 115 | 4 | 2 | 272 | 411 | 699 | 1.07e-88 | 278 |
| MsG0080047787.01.T01 | AT5G41130 | 43.887 | 319 | 130 | 3 | 2 | 272 | 394 | 711 | 2.63e-86 | 272 |
| MsG0080047787.01.T01 | AT3G02030 | 44.828 | 290 | 137 | 3 | 3 | 272 | 378 | 664 | 8.37e-79 | 251 |
| MsG0080047787.01.T01 | AT3G02030 | 43.448 | 290 | 137 | 4 | 3 | 272 | 378 | 660 | 2.24e-74 | 239 |
| MsG0080047787.01.T01 | AT3G26820 | 49.259 | 270 | 121 | 4 | 4 | 272 | 378 | 632 | 4.41e-70 | 228 |
| MsG0080047787.01.T01 | AT3G26820 | 46.774 | 186 | 85 | 2 | 4 | 189 | 378 | 549 | 5.32e-46 | 162 |
Find 63 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTGGAAATGACAGATTT+TGG | 0.182916 | contig101end:-32182 | MsG0080047787.01.T01:intergenic |
| TGATCTGTTTACAGGAAAAT+TGG | 0.200570 | contig101end:+31099 | MsG0080047787.01.T01:CDS |
| ATTGATTGGGTGAAGGTATT+TGG | 0.238155 | contig101end:+31148 | MsG0080047787.01.T01:CDS |
| CTATCAATTAAATTCCTATA+AGG | 0.256262 | contig101end:-32375 | MsG0080047787.01.T01:intergenic |
| AAAGATGATGCACCTTAAAA+TGG | 0.279230 | contig101end:-31261 | MsG0080047787.01.T01:intergenic |
| GCTGCCATTCTCACAAATTC+TGG | 0.282965 | contig101end:-31618 | MsG0080047787.01.T01:intergenic |
| TCCATGCCTTTCATTCTTAT+AGG | 0.292415 | contig101end:-32249 | MsG0080047787.01.T01:intergenic |
| GTGAAGAATACAAATTGTTT+TGG | 0.302991 | contig101end:+31586 | MsG0080047787.01.T01:CDS |
| CTTATAGGAATTTAATTGAT+AGG | 0.310563 | contig101end:+32376 | MsG0080047787.01.T01:CDS |
| GCCCATCCTGATCTGTTTAC+AGG | 0.312976 | contig101end:+31091 | MsG0080047787.01.T01:CDS |
| CAACGACTTAATTAAGATTC+CGG | 0.330944 | contig101end:+31999 | MsG0080047787.01.T01:CDS |
| AATTGATAGGAAAATGTATC+AGG | 0.341683 | contig101end:+32389 | MsG0080047787.01.T01:CDS |
| AGATTATTTCGTTCTGTTAC+CGG | 0.342350 | contig101end:+30901 | MsG0080047787.01.T01:CDS |
| GAGGATGGAAAGATAGTAAA+AGG | 0.351214 | contig101end:+30946 | MsG0080047787.01.T01:CDS |
| GGTGCCACGATTGTGCCATT+TGG | 0.379938 | contig101end:+31648 | MsG0080047787.01.T01:CDS |
| AAAAGATTGCTTGCTGATAC+AGG | 0.380352 | contig101end:-31178 | MsG0080047787.01.T01:intergenic |
| AGAGGGAGGAGGATCCTTAT+AGG | 0.391376 | contig101end:+32361 | MsG0080047787.01.T01:CDS |
| ATCGAGACTCGGTTAAGATT+AGG | 0.419884 | contig101end:+32049 | MsG0080047787.01.T01:CDS |
| CTCACAAATTCTGGATGATC+AGG | 0.424559 | contig101end:-31609 | MsG0080047787.01.T01:intergenic |
| GAGAGCCTCACGTGCACCAC+CGG | 0.449620 | contig101end:-31239 | MsG0080047787.01.T01:intergenic |
| CTGAGGTAATCGCTGACAAC+CGG | 0.467991 | contig101end:-32018 | MsG0080047787.01.T01:intergenic |
| GTGAGAATGGCAGCACGATT+CGG | 0.472364 | contig101end:+31627 | MsG0080047787.01.T01:CDS |
| AAGATAGTAAAAGGTCTGTC+TGG | 0.479324 | contig101end:+30955 | MsG0080047787.01.T01:CDS |
| CTGTCTGGTGTTCCAGATGA+AGG | 0.491069 | contig101end:+30970 | MsG0080047787.01.T01:CDS |
| AATAAGACAGGACCTTCATC+TGG | 0.491280 | contig101end:-30982 | MsG0080047787.01.T01:intergenic |
| GATTGGGTGAAGGTATTTGG+CGG | 0.496169 | contig101end:+31151 | MsG0080047787.01.T01:CDS |
| CACGTGCACCACCGGGATAT+AGG | 0.496494 | contig101end:-31231 | MsG0080047787.01.T01:intergenic |
| TCATCCAGAATTTGTGAGAA+TGG | 0.497949 | contig101end:+31614 | MsG0080047787.01.T01:CDS |
| ATCTGTGATGTTCTCTACAT+TGG | 0.498726 | contig101end:+30924 | MsG0080047787.01.T01:CDS |
| ATTGGGTGAAGGTATTTGGC+GGG | 0.508406 | contig101end:+31152 | MsG0080047787.01.T01:CDS |
| TTCTATGATTGATTGGGTGA+AGG | 0.512581 | contig101end:+31141 | MsG0080047787.01.T01:CDS |
| TCCTGTAAACAGATCAGGAT+GGG | 0.520965 | contig101end:-31092 | MsG0080047787.01.T01:intergenic |
| ACTTAATCTGCAGGTACAGT+TGG | 0.522030 | contig101end:-32302 | MsG0080047787.01.T01:intergenic |
| GGCAAACCTATAAGAATGAA+AGG | 0.527500 | contig101end:+32243 | MsG0080047787.01.T01:CDS |
| TGTAGAGAACATCACAGATC+CGG | 0.544185 | contig101end:-30920 | MsG0080047787.01.T01:intergenic |
| AGATGAGAACAGTGGAGAGG+TGG | 0.553794 | contig101end:+32155 | MsG0080047787.01.T01:CDS |
| TCAGAAGGGTATTGCTCTCG+TGG | 0.555447 | contig101end:+31064 | MsG0080047787.01.T01:intron |
| CAACTTCAGACTTAATCTGC+AGG | 0.561313 | contig101end:-32311 | MsG0080047787.01.T01:intergenic |
| ACCTATAAGAATGAAAGGCA+TGG | 0.566613 | contig101end:+32248 | MsG0080047787.01.T01:CDS |
| TGTGATGTTCTCTACATTGG+AGG | 0.567193 | contig101end:+30927 | MsG0080047787.01.T01:CDS |
| ATTGTGCCATTTGGAGCTGT+AGG | 0.569928 | contig101end:+31657 | MsG0080047787.01.T01:CDS |
| GAAGGTCCTGTCTTATTCGT+CGG | 0.569980 | contig101end:+30988 | MsG0080047787.01.T01:CDS |
| TCTTCGCCTACAGCTCCAAA+TGG | 0.571096 | contig101end:-31663 | MsG0080047787.01.T01:intergenic |
| ATATCCCGGTGGTGCACGTG+AGG | 0.584040 | contig101end:+31234 | MsG0080047787.01.T01:CDS |
| AGAGCCTCACGTGCACCACC+GGG | 0.584102 | contig101end:-31238 | MsG0080047787.01.T01:intergenic |
| CCAAAATCTGTCATTTCCAG+TGG | 0.585774 | contig101end:+32182 | MsG0080047787.01.T01:CDS |
| CTTGATCAAGAAGAGGGAGG+AGG | 0.593122 | contig101end:+32350 | MsG0080047787.01.T01:CDS |
| CAGAGATGTTAATCGAGACT+CGG | 0.599945 | contig101end:+32038 | MsG0080047787.01.T01:CDS |
| TCTCACGTTCTCCTATATCC+CGG | 0.601456 | contig101end:+31220 | MsG0080047787.01.T01:CDS |
| TAGATTACTTGATCAAGAAG+AGG | 0.608659 | contig101end:+32343 | MsG0080047787.01.T01:CDS |
| TGATAACCGACGAATAAGAC+AGG | 0.610814 | contig101end:-30994 | MsG0080047787.01.T01:intergenic |
| CAGAAGGGTATTGCTCTCGT+GGG | 0.615284 | contig101end:+31065 | MsG0080047787.01.T01:intron |
| AGATTACTTGATCAAGAAGA+GGG | 0.618969 | contig101end:+32344 | MsG0080047787.01.T01:CDS |
| ATGTTCTCTACATTGGAGGA+TGG | 0.631466 | contig101end:+30931 | MsG0080047787.01.T01:CDS |
| AGCTCCAAATGGCACAATCG+TGG | 0.641288 | contig101end:-31652 | MsG0080047787.01.T01:intergenic |
| TTCCTGTAAACAGATCAGGA+TGG | 0.656474 | contig101end:-31093 | MsG0080047787.01.T01:intergenic |
| CAGAGATGAGAACAGTGGAG+AGG | 0.661717 | contig101end:+32152 | MsG0080047787.01.T01:intron |
| CACGTTCTCCTATATCCCGG+TGG | 0.663360 | contig101end:+31223 | MsG0080047787.01.T01:CDS |
| TTGGGTGAAGGTATTTGGCG+GGG | 0.679005 | contig101end:+31153 | MsG0080047787.01.T01:CDS |
| AATAGATAGTAAAATCGACC+CGG | 0.684620 | contig101end:-32219 | MsG0080047787.01.T01:intergenic |
| TTACTTGATCAAGAAGAGGG+AGG | 0.689781 | contig101end:+32347 | MsG0080047787.01.T01:CDS |
| ACCTTCAGAGATGAGAACAG+TGG | 0.690993 | contig101end:+32147 | MsG0080047787.01.T01:intron |
| AGTCTCGATTAACATCTCTG+AGG | 0.732349 | contig101end:-32035 | MsG0080047786.01.T01:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATATAGAAAATGTA+AGG | - | contig101end:31326-31345 | MsG0080047787.01.T01:intergenic | 10.0% |
| !! | CTATCAATTAAATTCCTATA+AGG | - | contig101end:32378-32397 | MsG0080047787.01.T01:intergenic | 20.0% |
| !! | CTTATAGGAATTTAATTGAT+AGG | + | contig101end:32376-32395 | MsG0080047787.01.T01:CDS | 20.0% |
| !! | TCCTATAAATTATAATGTCA+GGG | + | contig101end:31564-31583 | MsG0080047787.01.T01:intron | 20.0% |
| !! | TTCTTTATACTTTATAGTGT+TGG | + | contig101end:31369-31388 | MsG0080047787.01.T01:intron | 20.0% |
| !!! | CATTTCTTATTGAATTTTAC+AGG | + | contig101end:31963-31982 | MsG0080047787.01.T01:intron | 20.0% |
| ! | AATTGATAGGAAAATGTATC+AGG | + | contig101end:32389-32408 | MsG0080047787.01.T01:CDS | 25.0% |
| ! | ACCCTGACATTATAATTTAT+AGG | - | contig101end:31568-31587 | MsG0080047787.01.T01:intergenic | 25.0% |
| ! | CAAAAAATAGTACATAGAGA+AGG | - | contig101end:31467-31486 | MsG0080047787.01.T01:intergenic | 25.0% |
| ! | CTCCTATAAATTATAATGTC+AGG | + | contig101end:31563-31582 | MsG0080047787.01.T01:intron | 25.0% |
| ! | GAACATTTGGTATATCTAAT+TGG | + | contig101end:31939-31958 | MsG0080047787.01.T01:intron | 25.0% |
| !! | ATCATTTTCAGAAGGATATA+AGG | - | contig101end:32415-32434 | MsG0080047787.01.T01:intergenic | 25.0% |
| !! | GTGAAGAATACAAATTGTTT+TGG | + | contig101end:31586-31605 | MsG0080047787.01.T01:CDS | 25.0% |
| !! | TGAGTTTTCTATGATTGATT+GGG | + | contig101end:31135-31154 | MsG0080047787.01.T01:CDS | 25.0% |
| AAAGATGATGCACCTTAAAA+TGG | - | contig101end:31264-31283 | MsG0080047786.01.T01:intergenic | 30.0% | |
| AATAACCGTGGATCAAAATA+CGG | - | contig101end:31297-31316 | MsG0080047787.01.T01:intergenic | 30.0% | |
| AATAGATAGTAAAATCGACC+CGG | - | contig101end:32222-32241 | MsG0080047787.01.T01:intergenic | 30.0% | |
| AGATGAATTTCTAAGTCAGA+AGG | + | contig101end:31049-31068 | MsG0080047787.01.T01:intron | 30.0% | |
| AGATTACTTGATCAAGAAGA+GGG | + | contig101end:32344-32363 | MsG0080047787.01.T01:CDS | 30.0% | |
| AGATTATTTCGTTCTGTTAC+CGG | + | contig101end:30901-30920 | MsG0080047787.01.T01:CDS | 30.0% | |
| CAACGACTTAATTAAGATTC+CGG | + | contig101end:31999-32018 | MsG0080047787.01.T01:CDS | 30.0% | |
| GATCTCTAAGTTTGACATAT+AGG | - | contig101end:31505-31524 | MsG0080047787.01.T01:intergenic | 30.0% | |
| GATGAATTTCTAAGTCAGAA+GGG | + | contig101end:31050-31069 | MsG0080047787.01.T01:intron | 30.0% | |
| TAGATTACTTGATCAAGAAG+AGG | + | contig101end:32343-32362 | MsG0080047787.01.T01:CDS | 30.0% | |
| TCAACATATGCATCTATGAT+CGG | - | contig101end:31808-31827 | MsG0080047787.01.T01:intergenic | 30.0% | |
| TGATCTGTTTACAGGAAAAT+TGG | + | contig101end:31099-31118 | MsG0080047787.01.T01:CDS | 30.0% | |
| ! | AATTTTCCTGTAAACAGATC+AGG | - | contig101end:31100-31119 | MsG0080047787.01.T01:intergenic | 30.0% |
| ! | CTGAGTTTTCTATGATTGAT+TGG | + | contig101end:31134-31153 | MsG0080047787.01.T01:CDS | 30.0% |
| ! | GATGCATATGTTGAATGTTT+TGG | + | contig101end:31814-31833 | MsG0080047787.01.T01:intron | 30.0% |
| !! | AAAATAATCAAGCCTTGTTG+TGG | + | contig101end:31909-31928 | MsG0080047787.01.T01:intron | 30.0% |
| !! | GGTCGATTTTACTATCTATT+TGG | + | contig101end:32222-32241 | MsG0080047787.01.T01:CDS | 30.0% |
| !!! | TATAGTGTTGGTTAGTTTTG+TGG | + | contig101end:31381-31400 | MsG0080047787.01.T01:intron | 30.0% |
| AAGATAGTAAAAGGTCTGTC+TGG | + | contig101end:30955-30974 | MsG0080047787.01.T01:CDS | 35.0% | |
| ACCTATAAGAATGAAAGGCA+TGG | + | contig101end:32248-32267 | MsG0080047787.01.T01:CDS | 35.0% | |
| ATCTGTGATGTTCTCTACAT+TGG | + | contig101end:30924-30943 | MsG0080047787.01.T01:CDS | 35.0% | |
| GAGGATGGAAAGATAGTAAA+AGG | + | contig101end:30946-30965 | MsG0080047787.01.T01:CDS | 35.0% | |
| GGCAAACCTATAAGAATGAA+AGG | + | contig101end:32243-32262 | MsG0080047787.01.T01:CDS | 35.0% | |
| GTAAGGACATAAAATAACCG+TGG | - | contig101end:31309-31328 | MsG0080047787.01.T01:intergenic | 35.0% | |
| TCATCCAGAATTTGTGAGAA+TGG | + | contig101end:31614-31633 | MsG0080047787.01.T01:CDS | 35.0% | |
| TCCATGCCTTTCATTCTTAT+AGG | - | contig101end:32252-32271 | MsG0080047787.01.T01:intergenic | 35.0% | |
| TTCTATGATTGATTGGGTGA+AGG | + | contig101end:31141-31160 | MsG0080047787.01.T01:CDS | 35.0% | |
| TTGTGGAGAGAATGAACATT+TGG | + | contig101end:31926-31945 | MsG0080047787.01.T01:intron | 35.0% | |
| ! | AAAAGATTGCTTGCTGATAC+AGG | - | contig101end:31181-31200 | MsG0080047787.01.T01:intergenic | 35.0% |
| ! | CACGAACTGTTATTTGATGA+TGG | + | contig101end:31527-31546 | MsG0080047787.01.T01:intron | 35.0% |
| !! | ATTGATTGGGTGAAGGTATT+TGG | + | contig101end:31148-31167 | MsG0080047787.01.T01:CDS | 35.0% |
| !!! | TGTTACCGTATTTTGATCCA+CGG | + | contig101end:31289-31308 | MsG0080047787.01.T01:intron | 35.0% |
| AATAAGACAGGACCTTCATC+TGG | - | contig101end:30985-31004 | MsG0080047787.01.T01:intergenic | 40.0% | |
| ACTTAATCTGCAGGTACAGT+TGG | - | contig101end:32305-32324 | MsG0080047787.01.T01:intergenic | 40.0% | |
| AGTCTCGATTAACATCTCTG+AGG | - | contig101end:32038-32057 | MsG0080047787.01.T01:intergenic | 40.0% | |
| ATGTTCTCTACATTGGAGGA+TGG | + | contig101end:30931-30950 | MsG0080047787.01.T01:CDS | 40.0% | |
| CAACTTCAGACTTAATCTGC+AGG | - | contig101end:32314-32333 | MsG0080047787.01.T01:intergenic | 40.0% | |
| CAGAGATGTTAATCGAGACT+CGG | + | contig101end:32038-32057 | MsG0080047787.01.T01:CDS | 40.0% | |
| CTCACAAATTCTGGATGATC+AGG | - | contig101end:31612-31631 | MsG0080047787.01.T01:intergenic | 40.0% | |
| TCCTGTAAACAGATCAGGAT+GGG | - | contig101end:31095-31114 | MsG0080047787.01.T01:intergenic | 40.0% | |
| TGATAACCGACGAATAAGAC+AGG | - | contig101end:30997-31016 | MsG0080047787.01.T01:intergenic | 40.0% | |
| TGTAGAGAACATCACAGATC+CGG | - | contig101end:30923-30942 | MsG0080047787.01.T01:intergenic | 40.0% | |
| TGTGATGTTCTCTACATTGG+AGG | + | contig101end:30927-30946 | MsG0080047787.01.T01:CDS | 40.0% | |
| TGTTCATTCTCTCCACAACA+AGG | - | contig101end:31924-31943 | MsG0080047787.01.T01:intergenic | 40.0% | |
| TTACTTGATCAAGAAGAGGG+AGG | + | contig101end:32347-32366 | MsG0080047787.01.T01:CDS | 40.0% | |
| TTCCTGTAAACAGATCAGGA+TGG | - | contig101end:31096-31115 | MsG0080047787.01.T01:intergenic | 40.0% | |
| ! | AGTGGTTCTACCAAAAATGC+CGG | + | contig101end:32200-32219 | MsG0080047787.01.T01:CDS | 40.0% |
| ! | ATCGAGACTCGGTTAAGATT+AGG | + | contig101end:32049-32068 | MsG0080047787.01.T01:CDS | 40.0% |
| ! | CCAAAATCTGTCATTTCCAG+TGG | + | contig101end:32182-32201 | MsG0080047787.01.T01:CDS | 40.0% |
| ! | CCACTGGAAATGACAGATTT+TGG | - | contig101end:32185-32204 | MsG0080047787.01.T01:intergenic | 40.0% |
| ! | GGGGTTTGATCATTTTCAGA+AGG | - | contig101end:32423-32442 | MsG0080047787.01.T01:intergenic | 40.0% |
| ! | TAAAATCGACCCGGCATTTT+TGG | - | contig101end:32213-32232 | MsG0080047787.01.T01:intergenic | 40.0% |
| ACCTTCAGAGATGAGAACAG+TGG | + | contig101end:32147-32166 | MsG0080047787.01.T01:intron | 45.0% | |
| GCTGCCATTCTCACAAATTC+TGG | - | contig101end:31621-31640 | MsG0080047787.01.T01:intergenic | 45.0% | |
| TCCACTGTTCTCATCTCTGA+AGG | - | contig101end:32151-32170 | MsG0080047787.01.T01:intergenic | 45.0% | |
| TCTCACGTTCTCCTATATCC+CGG | + | contig101end:31220-31239 | MsG0080047787.01.T01:CDS | 45.0% | |
| ! | ACGTGAGGCTCTCCATTTTA+AGG | + | contig101end:31249-31268 | MsG0080047787.01.T01:CDS | 45.0% |
| ! | CGTCGGTTATCACATGTGAT+GGG | + | contig101end:31005-31024 | MsG0080047787.01.T01:intron | 45.0% |
| ! | GAAGGTCCTGTCTTATTCGT+CGG | + | contig101end:30988-31007 | MsG0080047787.01.T01:CDS | 45.0% |
| ! | GTGGTTCTACCAAAAATGCC+GGG | + | contig101end:32201-32220 | MsG0080047787.01.T01:CDS | 45.0% |
| ! | TCGTCGGTTATCACATGTGA+TGG | + | contig101end:31004-31023 | MsG0080047787.01.T01:intron | 45.0% |
| !! | ATTGGGTGAAGGTATTTGGC+GGG | + | contig101end:31152-31171 | MsG0080047787.01.T01:CDS | 45.0% |
| !! | ATTGTGCCATTTGGAGCTGT+AGG | + | contig101end:31657-31676 | MsG0080047787.01.T01:CDS | 45.0% |
| !! | GATTGGGTGAAGGTATTTGG+CGG | + | contig101end:31151-31170 | MsG0080047787.01.T01:CDS | 45.0% |
| !!! | GGCATTTTTGGTAGAACCAC+TGG | - | contig101end:32201-32220 | MsG0080047787.01.T01:intergenic | 45.0% |
| AGAGGGAGGAGGATCCTTAT+AGG | + | contig101end:32361-32380 | MsG0080047787.01.T01:CDS | 50.0% | |
| AGATGAGAACAGTGGAGAGG+TGG | + | contig101end:32155-32174 | MsG0080047787.01.T01:CDS | 50.0% | |
| AGCTCCAAATGGCACAATCG+TGG | - | contig101end:31655-31674 | MsG0080047787.01.T01:intergenic | 50.0% | |
| CAGAGATGAGAACAGTGGAG+AGG | + | contig101end:32152-32171 | MsG0080047787.01.T01:intron | 50.0% | |
| CTGAGGTAATCGCTGACAAC+CGG | - | contig101end:32021-32040 | MsG0080047787.01.T01:intergenic | 50.0% | |
| CTGTCTGGTGTTCCAGATGA+AGG | + | contig101end:30970-30989 | MsG0080047787.01.T01:CDS | 50.0% | |
| CTTGATCAAGAAGAGGGAGG+AGG | + | contig101end:32350-32369 | MsG0080047787.01.T01:CDS | 50.0% | |
| GCCCATCCTGATCTGTTTAC+AGG | + | contig101end:31091-31110 | MsG0080047787.01.T01:CDS | 50.0% | |
| GTGAGAATGGCAGCACGATT+CGG | + | contig101end:31627-31646 | MsG0080047787.01.T01:CDS | 50.0% | |
| TCTTCGCCTACAGCTCCAAA+TGG | - | contig101end:31666-31685 | MsG0080047787.01.T01:intergenic | 50.0% | |
| !! | CAGAAGGGTATTGCTCTCGT+GGG | + | contig101end:31065-31084 | MsG0080047787.01.T01:intron | 50.0% |
| !! | TCAGAAGGGTATTGCTCTCG+TGG | + | contig101end:31064-31083 | MsG0080047787.01.T01:intron | 50.0% |
| !! | TTGGGTGAAGGTATTTGGCG+GGG | + | contig101end:31153-31172 | MsG0080047787.01.T01:CDS | 50.0% |
| CACGTTCTCCTATATCCCGG+TGG | + | contig101end:31223-31242 | MsG0080047787.01.T01:CDS | 55.0% | |
| ! | GGTGCCACGATTGTGCCATT+TGG | + | contig101end:31648-31667 | MsG0080047787.01.T01:CDS | 55.0% |
| ATATCCCGGTGGTGCACGTG+AGG | + | contig101end:31234-31253 | MsG0080047787.01.T01:CDS | 60.0% | |
| CACGTGCACCACCGGGATAT+AGG | - | contig101end:31234-31253 | MsG0080047787.01.T01:intergenic | 60.0% | |
| AGAGCCTCACGTGCACCACC+GGG | - | contig101end:31241-31260 | MsG0080047787.01.T01:intergenic | 65.0% | |
| GAGAGCCTCACGTGCACCAC+CGG | - | contig101end:31242-31261 | MsG0080047787.01.T01:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig101end | gene | 30892 | 32458 | 30892 | ID=MsG0080047787.01;Name=MsG0080047787.01 |
| contig101end | mRNA | 30892 | 32458 | 30892 | ID=MsG0080047787.01.T01;Parent=MsG0080047787.01;Name=MsG0080047787.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|5|0|274 |
| contig101end | exon | 30892 | 31009 | 30892 | ID=MsG0080047787.01.T01:exon:4697;Parent=MsG0080047787.01.T01 |
| contig101end | exon | 31068 | 31270 | 31068 | ID=MsG0080047787.01.T01:exon:4696;Parent=MsG0080047787.01.T01 |
| contig101end | exon | 31585 | 31698 | 31585 | ID=MsG0080047787.01.T01:exon:4695;Parent=MsG0080047787.01.T01 |
| contig101end | exon | 31985 | 32070 | 31985 | ID=MsG0080047787.01.T01:exon:4694;Parent=MsG0080047787.01.T01 |
| contig101end | exon | 32155 | 32458 | 32155 | ID=MsG0080047787.01.T01:exon:4693;Parent=MsG0080047787.01.T01 |
| contig101end | CDS | 30892 | 31009 | 30892 | ID=MsG0080047787.01.T01:cds;Parent=MsG0080047787.01.T01 |
| contig101end | CDS | 31068 | 31270 | 31068 | ID=MsG0080047787.01.T01:cds;Parent=MsG0080047787.01.T01 |
| contig101end | CDS | 31585 | 31698 | 31585 | ID=MsG0080047787.01.T01:cds;Parent=MsG0080047787.01.T01 |
| contig101end | CDS | 31985 | 32070 | 31985 | ID=MsG0080047787.01.T01:cds;Parent=MsG0080047787.01.T01 |
| contig101end | CDS | 32155 | 32458 | 32155 | ID=MsG0080047787.01.T01:cds;Parent=MsG0080047787.01.T01 |
| Gene Sequence |
| Protein sequence |
