AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047837.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047837.01.T01 MTR_6g086455 88.803 259 27 1 3 259 2 260 5.48e-176 487
MsG0080047837.01.T01 MTR_2g102080 39.241 158 91 2 77 230 1 157 1.36e-33 122
MsG0080047837.01.T01 MTR_4g012450 29.730 185 113 4 57 226 5 187 2.72e-21 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047837.01.T01 AT4G13270 49.153 236 88 7 1 227 1 213 7.02e-64 201
MsG0080047837.01.T01 AT1G52330 37.273 220 112 5 13 228 16 213 5.36e-42 144
MsG0080047837.01.T01 AT1G52330 38.158 152 89 2 59 206 41 191 2.20e-31 117

Find 89 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAAGTTTGATGGAAAATT+AGG 0.119567 contig125end:-16348 MsG0080047837.01.T01:CDS
TGTTCCGAACTTTGAGTTTC+AGG 0.179701 contig125end:+16589 None:intergenic
TGTGAATAAGAATCGAAATT+AGG 0.230113 contig125end:+16861 None:intergenic
CGCTTGATGGTGGGAGGATT+AGG 0.241930 contig125end:-16488 MsG0080047837.01.T01:CDS
GCGGTTGTTGCGACGGTGGA+TGG 0.308365 contig125end:+16767 None:intergenic
TCACCTCAGGATAGCAGTTT+TGG 0.316403 contig125end:+11615 None:intergenic
GGGTACCGTGGTCGGGAGAT+TGG 0.336218 contig125end:-16522 MsG0080047837.01.T01:CDS
CTAAGTTTGATGGAAAATTA+GGG 0.337582 contig125end:-16347 MsG0080047837.01.T01:CDS
GATAAGTCAAGAATTGGTTT+AGG 0.343273 contig125end:+16618 None:intergenic
GACACTGTTGCTAAGTTTGA+TGG 0.345431 contig125end:-16357 MsG0080047837.01.T01:CDS
AATAGCAACAATACCTTCAT+AGG 0.348638 contig125end:+16318 None:intergenic
GGGACTGTTTCGTCGCTTGA+TGG 0.352936 contig125end:-16501 MsG0080047837.01.T01:CDS
TCACTCACCATTGTAAATTC+TGG 0.354948 contig125end:-10727 MsG0080047837.01.T01:three_prime_UTR
TAAGAATCGAAATTAGGGTT+AGG 0.357788 contig125end:+16867 None:intergenic
GTGAATAAGAATCGAAATTA+GGG 0.364116 contig125end:+16862 None:intergenic
GAGAAAGATAAGTCAAGAAT+TGG 0.373962 contig125end:+16612 None:intergenic
GGTACCGTGGTCGGGAGATT+GGG 0.380896 contig125end:-16521 MsG0080047837.01.T01:CDS
GAGGATTAGGGCGCGAGGTT+CGG 0.390903 contig125end:-16475 MsG0080047837.01.T01:CDS
CGGTTGTTGCGACGGTGGAT+GGG 0.391978 contig125end:+16768 None:intergenic
GGGTTAGGGTTTGAGGGAAG+AGG 0.393384 contig125end:+16882 None:intergenic
GCTTGATGGTGGGAGGATTA+GGG 0.399913 contig125end:-16487 MsG0080047837.01.T01:CDS
ATTAGGGTTTCTTCCTATGA+AGG 0.418975 contig125end:-16331 MsG0080047837.01.T01:intron
GTTCCGAACTTTGAGTTTCA+GGG 0.419207 contig125end:+16590 None:intergenic
GATTTGCTTTGATTGAGATA+TGG 0.419262 contig125end:+16640 None:intergenic
GAAATTAGGGTTAGGGTTTG+AGG 0.424207 contig125end:+16875 None:intergenic
GGAGTACGACGGCGGTGATA+AGG 0.426341 contig125end:+16736 None:intergenic
AAGAATCGAAATTAGGGTTA+GGG 0.427330 contig125end:+16868 None:intergenic
ATCAACAACATGACAACAAC+AGG 0.434539 contig125end:-16933 None:intergenic
AATTAATGAAAATCGTACTT+TGG 0.436802 contig125end:-10649 MsG0080047837.01.T01:three_prime_UTR
AAATTAGGGTTAGGGTTTGA+GGG 0.445140 contig125end:+16876 None:intergenic
TCTCCCTGAAACTCAAAGTT+CGG 0.445703 contig125end:-16593 MsG0080047837.01.T01:CDS
CTTCCTCAAAACGTCGTCAT+TGG 0.469999 contig125end:-16807 MsG0080047837.01.T01:CDS
ACGGTGGATGGGGTAGTATG+AGG 0.482371 contig125end:+16779 None:intergenic
TCAGTCACTGGGAGATATGA+TGG 0.490314 contig125end:-11070 MsG0080047837.01.T01:intron
ACGACAACTGTATAAACAAA+AGG 0.492876 contig125end:+10810 None:intergenic
TAGCCTCGGGTACCGTGGTC+GGG 0.494787 contig125end:-16529 MsG0080047837.01.T01:CDS
CTGTTTCGTCGCTTGATGGT+GGG 0.496085 contig125end:-16497 MsG0080047837.01.T01:CDS
CGGTGGATGGGGTAGTATGA+GGG 0.503018 contig125end:+16780 None:intergenic
GATTCGATTGATGTTAGCCT+CGG 0.513660 contig125end:-16543 MsG0080047837.01.T01:CDS
AGTTGCGGCGGTTGTTGCGA+CGG 0.515017 contig125end:+16760 None:intergenic
TTAGCCTCGGGTACCGTGGT+CGG 0.515300 contig125end:-16530 MsG0080047837.01.T01:CDS
GGTTGTTGCGACGGTGGATG+GGG 0.520356 contig125end:+16769 None:intergenic
GTACATTTGCTTCAGTCACT+GGG 0.531441 contig125end:-11081 MsG0080047837.01.T01:intron
AGGTGAAGCTCTGGATCGGA+TGG 0.533285 contig125end:+16681 None:intergenic
AAATTGCAGCGGCGAGAAAG+AGG 0.534887 contig125end:+16715 None:intergenic
AACATCAGCGCTATCGAGAT+GGG 0.535610 contig125end:-11036 MsG0080047837.01.T01:CDS
TATCGAGATGGGAGATATGA+TGG 0.542457 contig125end:-10890 MsG0080047837.01.T01:CDS
TATCGAGATGGGAGATATGA+TGG 0.542457 contig125end:-10935 MsG0080047837.01.T01:CDS
TATCGAGATGGGAGATATGA+TGG 0.542457 contig125end:-10980 MsG0080047837.01.T01:CDS
TATCGAGATGGGAGATATGA+TGG 0.542457 contig125end:-11025 MsG0080047837.01.T01:CDS
ATTCGAGCTAGGTGAAGCTC+TGG 0.546103 contig125end:+16672 None:intergenic
AATATCAGCGCTATCGAGAT+GGG 0.548854 contig125end:-10901 MsG0080047837.01.T01:CDS
AATATCAGCGCTATCGAGAT+GGG 0.548854 contig125end:-10946 MsG0080047837.01.T01:CDS
AATATCAGCGCTATCGAGAT+GGG 0.548854 contig125end:-10991 MsG0080047837.01.T01:CDS
TAATATCAGCGCTATCGAGA+TGG 0.548937 contig125end:-10902 MsG0080047837.01.T01:CDS
TAATATCAGCGCTATCGAGA+TGG 0.548937 contig125end:-10947 MsG0080047837.01.T01:CDS
TAATATCAGCGCTATCGAGA+TGG 0.548937 contig125end:-10992 MsG0080047837.01.T01:CDS
GCTCTGGATCGGATGGGTAG+AGG 0.550739 contig125end:+16688 None:intergenic
TAACATCAGCGCTATCGAGA+TGG 0.551233 contig125end:-11037 MsG0080047837.01.T01:CDS
ACTGTTTCGTCGCTTGATGG+TGG 0.557049 contig125end:-16498 MsG0080047837.01.T01:CDS
AGCTAGGTGAAGCTCTGGAT+CGG 0.557601 contig125end:+16677 None:intergenic
CATGACAACAACAGGAGGGA+AGG 0.563107 contig125end:-16925 MsG0080047837.01.T01:CDS
ATTCGATTGATGTTAGCCTC+GGG 0.566516 contig125end:-16542 MsG0080047837.01.T01:CDS
CACTGGGAGATATGATGGAT+CGG 0.572280 contig125end:-11065 MsG0080047837.01.T01:CDS
TTTCGTCGCTTGATGGTGGG+AGG 0.573162 contig125end:-16494 MsG0080047837.01.T01:CDS
CTTATTGAAGACCTTGCCAA+GGG 0.575100 contig125end:-16393 MsG0080047837.01.T01:CDS
TCTTATTGAAGACCTTGCCA+AGG 0.576451 contig125end:-16394 MsG0080047837.01.T01:CDS
GGTTGAGCTGAATTCGAGCT+AGG 0.590528 contig125end:+16661 None:intergenic
TCTCCCGACCACGGTACCCG+AGG 0.603408 contig125end:+16526 None:intergenic
GATGTTAGCCTCGGGTACCG+TGG 0.604853 contig125end:-16534 MsG0080047837.01.T01:CDS
TGCTAATATCAGCGCTATCG+AGG 0.606813 contig125end:-10860 MsG0080047837.01.T01:CDS
AGATGGGAGATATGATGGAT+CGG 0.612123 contig125end:-10930 MsG0080047837.01.T01:CDS
AGATGGGAGATATGATGGAT+CGG 0.612123 contig125end:-10975 MsG0080047837.01.T01:CDS
AGATGGGAGATATGATGGAT+CGG 0.612123 contig125end:-11020 MsG0080047837.01.T01:CDS
AACAACATGACAACAACAGG+AGG 0.614601 contig125end:-16930 None:intergenic
AAACAATAACTCCCTTGGCA+AGG 0.621799 contig125end:+16382 None:intergenic
CGGCGGTGATAAGGTAGTTG+CGG 0.622300 contig125end:+16745 None:intergenic
TGCGGCGGTTGTTGCGACGG+TGG 0.628768 contig125end:+16763 None:intergenic
GGTGAAGCTCTGGATCGGAT+GGG 0.644111 contig125end:+16682 None:intergenic
CGGTGATAAGGTAGTTGCGG+CGG 0.644835 contig125end:+16748 None:intergenic
GGATGGGGTAGTATGAGGGA+AGG 0.656713 contig125end:+16784 None:intergenic
AGTTCAACCAGAATTTACAA+TGG 0.665605 contig125end:+10720 None:intergenic
GGTGGGAGGATTAGGGCGCG+AGG 0.667237 contig125end:-16480 MsG0080047837.01.T01:CDS
GAGAAAGAGGAGTACGACGG+CGG 0.691873 contig125end:+16728 None:intergenic
ACAACATGACAACAACAGGA+GGG 0.696484 contig125end:-16929 None:intergenic
ACGCCAAAACTGCTATCCTG+AGG 0.698773 contig125end:-11618 MsG0080047837.01.T01:intron
CAGTCCCAATCTCCCGACCA+CGG 0.702152 contig125end:+16517 None:intergenic
GGCGAGAAAGAGGAGTACGA+CGG 0.707255 contig125end:+16725 None:intergenic
GTAGAGGAAGAAAATTGCAG+CGG 0.719450 contig125end:+16704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTATAAAAAAAATTTGT+AGG - contig125end:14175-14194 MsG0080047837.01.T01:intron 10.0%
!! AACTATAAAAAAAATTTGTA+GGG - contig125end:14176-14195 MsG0080047837.01.T01:intron 10.0%
!! GATTTATAAACTTAATATTA+AGG + contig125end:16289-16308 None:intergenic 10.0%
!! TATATTATATTAAATTTGAG+TGG + contig125end:13697-13716 None:intergenic 10.0%
!! TCAAATTTAATATAATATAG+TGG - contig125end:13698-13717 MsG0080047837.01.T01:intron 10.0%
!!! CAAAATTTTTTTATAGTTTT+TGG - contig125end:13836-13855 MsG0080047837.01.T01:intron 10.0%
!!! CAAATTTTTTTTATAGTTTT+TGG + contig125end:14174-14193 None:intergenic 10.0%
!!! CAATTTTTTTTTATAGTTTT+TGG - contig125end:13897-13916 MsG0080047837.01.T01:intron 10.0%
!!! TTCTTATTTTTTATGTTTTT+CGG - contig125end:11402-11421 MsG0080047837.01.T01:intron 10.0%
!!! TTTTAATCATATATTGTTTA+GGG - contig125end:14908-14927 MsG0080047837.01.T01:intron 10.0%
!! AAACTATAAAAAAAAATTGC+AGG + contig125end:13896-13915 None:intergenic 15.0%
!! AAACTATAAAAAAAATTTGC+AGG - contig125end:14236-14255 MsG0080047837.01.T01:intron 15.0%
!! AACATTAAAATTAAGGAAAA+TGG - contig125end:12662-12681 MsG0080047837.01.T01:intron 15.0%
!! AACTATAAAAAAAAATTGCA+GGG + contig125end:13895-13914 None:intergenic 15.0%
!! AACTATAAAAAAAATTTGCA+GGG - contig125end:14237-14256 MsG0080047837.01.T01:intron 15.0%
!! AATTATGCAACATTAAAATT+AGG - contig125end:11592-11611 MsG0080047837.01.T01:intron 15.0%
!! ACATTAAAATTAAGGAAAAT+GGG - contig125end:12663-12682 MsG0080047837.01.T01:intron 15.0%
!! AGAATTATATACAAAAAGTA+TGG - contig125end:14343-14362 MsG0080047837.01.T01:intron 15.0%
!! AGCTTAAAAATTTAAAAGTA+AGG + contig125end:16414-16433 None:intergenic 15.0%
!! ATTATGCAACATTAAAATTA+AGG - contig125end:11593-11612 MsG0080047837.01.T01:intron 15.0%
!! ATTATGCAACATTAAAATTA+GGG - contig125end:11593-11612 MsG0080047837.01.T01:intron 15.0%
!! ATTCTTAAATATAGATGTAA+AGG - contig125end:15298-15317 MsG0080047837.01.T01:intron 15.0%
!! CTAATATATTTGGAAAAAAT+AGG - contig125end:12063-12082 MsG0080047837.01.T01:intron 15.0%
!! GCTTAAAAATTTAAAAGTAA+GGG + contig125end:16413-16432 None:intergenic 15.0%
!! TGTGATTATAGTTTATAATA+TGG - contig125end:11444-11463 MsG0080047837.01.T01:intron 15.0%
!! TTAGTGATTATATTTGTATT+TGG - contig125end:12604-12623 MsG0080047837.01.T01:intron 15.0%
!!! AAACTATAAAAAAATTTTGC+AGG + contig125end:13835-13854 None:intergenic 15.0%
!!! AACTATAAAAAAATTTTGCA+GGG + contig125end:13834-13853 None:intergenic 15.0%
!!! AATTTCAATTTTAACTTGTT+AGG - contig125end:12562-12581 MsG0080047837.01.T01:intron 15.0%
!!! ATATTTTTCTTATGATTCTA+AGG - contig125end:16025-16044 MsG0080047837.01.T01:intron 15.0%
!!! ATGTGTATTTTGATATAATA+TGG - contig125end:16441-16460 MsG0080047837.01.T01:CDS 15.0%
!!! CAAAAATAAAATTTTTTGCA+GGG - contig125end:14147-14166 MsG0080047837.01.T01:intron 15.0%
!!! CAAATTTTTTTTATGGTTTT+TGG - contig125end:13775-13794 MsG0080047837.01.T01:intron 15.0%
!!! CTTTTAATCATATATTGTTT+AGG - contig125end:14907-14926 MsG0080047837.01.T01:intron 15.0%
!!! TACATTTGTATTTAGAATTT+CGG - contig125end:11550-11569 MsG0080047837.01.T01:intron 15.0%
!!! TATATTTGTATTTGGAATTT+CGG - contig125end:12612-12631 MsG0080047837.01.T01:intron 15.0%
!! AAAATAGGAAATAATGAAGT+TGG - contig125end:12078-12097 MsG0080047837.01.T01:intron 20.0%
!! AAACCATAAAAAAAATTTGC+AGG + contig125end:13774-13793 None:intergenic 20.0%
!! AACCATAAAAAAAATTTGCA+GGG + contig125end:13773-13792 None:intergenic 20.0%
!! AATTAATGAAAATCGTACTT+TGG - contig125end:16919-16938 MsG0080047837.01.T01:CDS 20.0%
!! ATAATATAGTGGCTAAAATA+TGG - contig125end:13709-13728 MsG0080047837.01.T01:intron 20.0%
!! ATGTATTATTAGTATTACAC+TGG + contig125end:13547-13566 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG + contig125end:13101-13120 None:intergenic 20.0%
!! ATTGACAATTGGAAAAATAA+TGG + contig125end:11667-11686 None:intergenic 20.0%
!! CAAATGTAGAAATAATGTAT+CGG - contig125end:14970-14989 MsG0080047837.01.T01:intron 20.0%
!! CATTAAAATTAAGGAAAATG+GGG - contig125end:12664-12683 MsG0080047837.01.T01:intron 20.0%
!! GAAATGAAAAGTAATTTACA+TGG - contig125end:12251-12270 MsG0080047837.01.T01:intron 20.0%
!! GATTTAAGAACAGAAATAAA+AGG - contig125end:12229-12248 MsG0080047837.01.T01:intron 20.0%
!! TAAGATTGTAGTTAATTGAT+TGG - contig125end:15680-15699 MsG0080047837.01.T01:intron 20.0%
!! TAGGTATCAAATAGATAAAA+AGG + contig125end:15850-15869 None:intergenic 20.0%
!! TATTACCTTGTAATTTATCT+TGG + contig125end:13657-13676 None:intergenic 20.0%
!! TCAATTATCTAATAAATCAG+TGG - contig125end:15323-15342 MsG0080047837.01.T01:intron 20.0%
!! TTCTATTTAAACATTCCTAA+AGG + contig125end:11635-11654 None:intergenic 20.0%
!! TTGACAATTGGAAAAATAAT+GGG + contig125end:11666-11685 None:intergenic 20.0%
!! TTTGGATAAACAGTTTAATT+AGG - contig125end:13102-13121 MsG0080047837.01.T01:intron 20.0%
!!! AAACTTTTTATAGGGAATTA+GGG + contig125end:16128-16147 None:intergenic 20.0%
!!! ACTGTATTTTATCTTTAGAA+AGG + contig125end:13629-13648 None:intergenic 20.0%
!!! CAAAAACAAAAATTTTTGCA+AGG + contig125end:13924-13943 None:intergenic 20.0%
!!! CCAAAAATAAAATTTTTTGC+AGG - contig125end:14146-14165 MsG0080047837.01.T01:intron 20.0%
!!! CCTGCAAAAAATTTTATTTT+TGG + contig125end:14149-14168 None:intergenic 20.0%
!!! CTGTATTTTATCTTTAGAAA+GGG + contig125end:13628-13647 None:intergenic 20.0%
!!! CTTCTTATTTTTCTTTCTTT+TGG - contig125end:12447-12466 MsG0080047837.01.T01:intron 20.0%
!!! TACACTTCAAACTTTTTATA+GGG + contig125end:16136-16155 None:intergenic 20.0%
!!! TATTATCTACTGACTATATT+AGG + contig125end:14312-14331 None:intergenic 20.0%
!!! TCATTTTGTTCAATTGTTTT+AGG - contig125end:11980-11999 MsG0080047837.01.T01:intron 20.0%
!!! TGTTTTAGGTTTATTCAAAA+TGG - contig125end:11994-12013 MsG0080047837.01.T01:intron 20.0%
!!! TTTCTAAAGATAAAATACAG+TGG - contig125end:13628-13647 MsG0080047837.01.T01:intron 20.0%
!!! TTTTATTATTATGGTTGCAT+TGG - contig125end:12795-12814 MsG0080047837.01.T01:intron 20.0%
!!! TTTTCCAAATATATTAGAAG+AGG + contig125end:12060-12079 None:intergenic 20.0%
! AAAATGGAGCAATTAAACAA+TGG + contig125end:15114-15133 None:intergenic 25.0%
! AAATGGAGCAATTAAACAAT+GGG + contig125end:15113-15132 None:intergenic 25.0%
! AAATTATAATGACCTCCTTT+AGG - contig125end:11617-11636 MsG0080047837.01.T01:intron 25.0%
! AAGAACTTGACTATAACTAA+CGG + contig125end:11701-11720 None:intergenic 25.0%
! AATATTTGCTTCCTTTAACT+TGG - contig125end:12505-12524 MsG0080047837.01.T01:intron 25.0%
! AATTCTCATAACTCTTGTAT+TGG - contig125end:11857-11876 MsG0080047837.01.T01:intron 25.0%
! AATTGAATGCACAAAGTTTA+AGG - contig125end:15030-15049 MsG0080047837.01.T01:intron 25.0%
! ACAAAACATTTCAGTTACAT+AGG + contig125end:15869-15888 None:intergenic 25.0%
! ATATATGATTAAAAGACTCC+CGG + contig125end:14902-14921 None:intergenic 25.0%
! ATGAAAAGTAATTTACATGG+TGG - contig125end:12254-12273 MsG0080047837.01.T01:intron 25.0%
! ATTAGGCTTAAATATGGTAT+TGG + contig125end:14295-14314 None:intergenic 25.0%
! ATTGAATGCACAAAGTTTAA+GGG - contig125end:15031-15050 MsG0080047837.01.T01:intron 25.0%
! CTAAGTTTGATGGAAAATTA+GGG - contig125end:11221-11240 MsG0080047837.01.T01:intron 25.0%
! CTTTCCTCTTCTAATATATT+TGG - contig125end:12053-12072 MsG0080047837.01.T01:intron 25.0%
! GACTATATTAGGCTTAAATA+TGG + contig125end:14301-14320 None:intergenic 25.0%
! GATCATAATGTAGATAGTAT+GGG + contig125end:13477-13496 None:intergenic 25.0%
! GTAAAAGTAGCTTCATAAAT+AGG - contig125end:12297-12316 MsG0080047837.01.T01:intron 25.0%
! GTGAATAAGAATCGAAATTA+GGG + contig125end:10709-10728 None:intergenic 25.0%
! GTGATTACAAACAAAAATCA+TGG + contig125end:14433-14452 None:intergenic 25.0%
! TAAAATTCTAGATTGTGACA+TGG - contig125end:13567-13586 MsG0080047837.01.T01:intron 25.0%
! TAATAGACTTGAAACTCAAA+AGG - contig125end:16065-16084 MsG0080047837.01.T01:intron 25.0%
! TACAAACAAAAATCATGGAA+AGG + contig125end:14428-14447 None:intergenic 25.0%
! TATTTAAACATTCCTAAAGG+AGG + contig125end:11632-11651 None:intergenic 25.0%
! TCATAACTTAAAAGCAATCA+TGG + contig125end:16258-16277 None:intergenic 25.0%
! TGACAAATCATCACATAAAT+GGG - contig125end:14109-14128 MsG0080047837.01.T01:intron 25.0%
! TGACAAATCATCACATAATT+GGG + contig125end:13962-13981 None:intergenic 25.0%
! TGACAATTGGAAAAATAATG+GGG + contig125end:11665-11684 None:intergenic 25.0%
! TGTAGTTAATTGATTGGAAT+TGG - contig125end:15686-15705 MsG0080047837.01.T01:intron 25.0%
! TGTGAATAAGAATCGAAATT+AGG + contig125end:10710-10729 None:intergenic 25.0%
! TTCTCAAAAAGACTTTGATT+GGG - contig125end:15237-15256 MsG0080047837.01.T01:intron 25.0%
! TTTCTCAAAAAGACTTTGAT+TGG - contig125end:15236-15255 MsG0080047837.01.T01:intron 25.0%
!! ATAAAAAGTTTGAAGTGTAG+AGG - contig125end:16137-16156 MsG0080047837.01.T01:intron 25.0%
!! CAAACTTTTTATAGGGAATT+AGG + contig125end:16129-16148 None:intergenic 25.0%
!! CTACACTTCAAACTTTTTAT+AGG + contig125end:16137-16156 None:intergenic 25.0%
!! TAAGGGAATATTTCTTTTTC+TGG - contig125end:15048-15067 MsG0080047837.01.T01:intron 25.0%
!! TGATCTATTTGACTTAACAA+CGG + contig125end:13339-13358 None:intergenic 25.0%
!!! AAACTAGGTTTTAGTGTTTT+GGG - contig125end:12892-12911 MsG0080047837.01.T01:intron 25.0%
!!! AATAAGAGTTTTTTTGAGAG+GGG + contig125end:10733-10752 None:intergenic 25.0%
!!! AGATGAATTTCAAGTTACAA+AGG - contig125end:12202-12221 MsG0080047837.01.T01:intron 25.0%
!!! CGATACATTATTTCTACATT+TGG + contig125end:14972-14991 None:intergenic 25.0%
!!! GAATAAGAGTTTTTTTGAGA+GGG + contig125end:10734-10753 None:intergenic 25.0%
!!! GTTTAATTGCTCCATTTTTT+CGG - contig125end:15116-15135 MsG0080047837.01.T01:intron 25.0%
!!! TCTGTTTTGAAATCAAACAA+CGG + contig125end:13075-13094 None:intergenic 25.0%
!!! TGAATAAGAGTTTTTTTGAG+AGG + contig125end:10735-10754 None:intergenic 25.0%
AAAAACCATAGGAACTATCA+AGG - contig125end:12996-13015 MsG0080047837.01.T01:intron 30.0%
AACCAGCACATAATAAGAAT+GGG + contig125end:15197-15216 None:intergenic 30.0%
AACTGTGTAAAGCATAACTA+TGG - contig125end:14522-14541 MsG0080047837.01.T01:intron 30.0%
AAGAATCGAAATTAGGGTTA+GGG + contig125end:10703-10722 None:intergenic 30.0%
AAGAGAAAACAATAACGTTC+TGG - contig125end:11726-11745 MsG0080047837.01.T01:intron 30.0%
AAGGATAATTCTTGAGAAGA+AGG - contig125end:14829-14848 MsG0080047837.01.T01:intron 30.0%
AATAGCAACAATACCTTCAT+AGG + contig125end:11253-11272 None:intergenic 30.0%
ACGACAACTGTATAAACAAA+AGG + contig125end:16761-16780 None:intergenic 30.0%
AGAAACTATGTAACGAACAA+AGG - contig125end:14493-14512 MsG0080047837.01.T01:intron 30.0%
AGACTATTTAGGAAAGCTTA+TGG + contig125end:13301-13320 None:intergenic 30.0%
AGAGTTATGAGAATTGAACA+CGG + contig125end:11852-11871 None:intergenic 30.0%
AGGATAATTCTTGAGAAGAA+GGG - contig125end:14830-14849 MsG0080047837.01.T01:intron 30.0%
AGTCAGTAGATAATAGTTCA+TGG - contig125end:14317-14336 MsG0080047837.01.T01:intron 30.0%
AGTTCAACCAGAATTTACAA+TGG + contig125end:16851-16870 None:intergenic 30.0%
ATTTGTACAGAATGCTAGTT+TGG + contig125end:13504-13523 None:intergenic 30.0%
CAAGAATTGCAAATGCATAT+AGG + contig125end:16214-16233 None:intergenic 30.0%
CTGAAGCAAATGTACAAAAA+TGG + contig125end:16482-16501 None:intergenic 30.0%
GAAAAATGACGATATTAGAG+AGG - contig125end:12847-12866 MsG0080047837.01.T01:intron 30.0%
GACAAATCATCACATAAATG+GGG - contig125end:14110-14129 MsG0080047837.01.T01:intron 30.0%
GACAAATCATCACATAATTG+GGG + contig125end:13961-13980 None:intergenic 30.0%
GACAATTGGAAAAATAATGG+GGG + contig125end:11664-11683 None:intergenic 30.0%
GAGAAAGATAAGTCAAGAAT+TGG + contig125end:10959-10978 None:intergenic 30.0%
GCTAAGTTTGATGGAAAATT+AGG - contig125end:11220-11239 MsG0080047837.01.T01:intron 30.0%
GGATCATAATGTAGATAGTA+TGG + contig125end:13478-13497 None:intergenic 30.0%
GTGACAAATCATCACATAAA+TGG - contig125end:14108-14127 MsG0080047837.01.T01:intron 30.0%
GTGACAAATCATCACATAAT+TGG + contig125end:13963-13982 None:intergenic 30.0%
GTTCAATAGTTAAAATGGCT+CGG - contig125end:15147-15166 MsG0080047837.01.T01:intron 30.0%
TAAGAATCGAAATTAGGGTT+AGG + contig125end:10704-10723 None:intergenic 30.0%
TAGTGGCTAAAATATGGTAT+TGG - contig125end:13715-13734 MsG0080047837.01.T01:intron 30.0%
TCAATTACTGAAGAAAGACT+TGG - contig125end:14577-14596 MsG0080047837.01.T01:intron 30.0%
TCTCCTATTTATGAAGCTAA+CGG + contig125end:12420-12439 None:intergenic 30.0%
TTAAACACCGTTAACACATA+GGG - contig125end:12383-12402 MsG0080047837.01.T01:intron 30.0%
TTCAAAACAGAGATCCTATT+TGG - contig125end:13084-13103 MsG0080047837.01.T01:intron 30.0%
TTTAAACACCGTTAACACAT+AGG - contig125end:12382-12401 MsG0080047837.01.T01:intron 30.0%
! AGTAATTTACATGGTGGAAT+TGG - contig125end:12260-12279 MsG0080047837.01.T01:intron 30.0%
! CAATTCTTGATAGCTTCAAT+TGG - contig125end:15714-15733 MsG0080047837.01.T01:intron 30.0%
! GATAAGTCAAGAATTGGTTT+AGG + contig125end:10953-10972 None:intergenic 30.0%
! GATTTGCTTTGATTGAGATA+TGG + contig125end:10931-10950 None:intergenic 30.0%
! GTGGTGCTCTTTTATTATTA+TGG - contig125end:12786-12805 MsG0080047837.01.T01:intron 30.0%
!! AAATGTTTTGTTCTGAATCC+AGG - contig125end:15878-15897 MsG0080047837.01.T01:intron 30.0%
!! AACAAAAGCACCAAGTATTA+TGG + contig125end:15746-15765 None:intergenic 30.0%
!! AATTTCAAGTTACAAAGGCA+TGG - contig125end:12207-12226 MsG0080047837.01.T01:intron 30.0%
!! CTGTTTCTATAAGTACTTAG+AGG + contig125end:13447-13466 None:intergenic 30.0%
!! GAAACTAGGTTTTAGTGTTT+TGG - contig125end:12891-12910 MsG0080047837.01.T01:intron 30.0%
!! GGTTCTAGAGATTAATTAGT+TGG - contig125end:13017-13036 MsG0080047837.01.T01:intron 30.0%
!! TTTTAAGTCTTCATACTCTC+AGG + contig125end:14397-14416 None:intergenic 30.0%
!! TTTTGTTTATACAGTTGTCG+TGG - contig125end:16760-16779 MsG0080047837.01.T01:CDS 30.0%
!!! CACGATTGCTTTTAAGTTAT+GGG - contig125end:16309-16328 MsG0080047837.01.T01:intron 30.0%
!!! CTATTTTGACTGAGTAATTC+AGG + contig125end:14685-14704 None:intergenic 30.0%
!!! GTCCCTGCAAATTTTTTTTA+TGG - contig125end:13768-13787 MsG0080047837.01.T01:intron 30.0%
!!! GTGGAACACTCTAAAATTTT+AGG - contig125end:15268-15287 MsG0080047837.01.T01:intron 30.0%
AAAAGACTTTGATTGGGAGA+AGG - contig125end:15243-15262 MsG0080047837.01.T01:intron 35.0%
AAATACAAACTCCACAGCTT+AGG - contig125end:13413-13432 MsG0080047837.01.T01:intron 35.0%
AAATTAGGGTTAGGGTTTGA+GGG + contig125end:10695-10714 None:intergenic 35.0%
AACAGAATCAGCTATCCATA+CGG + contig125end:11471-11490 None:intergenic 35.0%
AAGACAACAGATATCCATAC+GGG + contig125end:12538-12557 None:intergenic 35.0%
AAGCACATGTGAGACTATTT+AGG + contig125end:13312-13331 None:intergenic 35.0%
AAGCCGTTTGTACTATATAG+TGG - contig125end:12767-12786 MsG0080047837.01.T01:intron 35.0%
ACCAGCACATAATAAGAATG+GGG + contig125end:15196-15215 None:intergenic 35.0%
ACTAAAACCTAGTTTCTACC+TGG + contig125end:12887-12906 None:intergenic 35.0%
ACTTGGTAGAAGTTTGTCAT+GGG - contig125end:14594-14613 MsG0080047837.01.T01:intron 35.0%
AGTTTATAATATGGCCCGTA+TGG - contig125end:11453-11472 MsG0080047837.01.T01:intron 35.0%
ATAAGAATGGGGCAATTTGA+AGG + contig125end:15185-15204 None:intergenic 35.0%
ATCATCTTCTTTCGTATAGG+TGG - contig125end:14866-14885 MsG0080047837.01.T01:intron 35.0%
ATGCATATAGGCATAAGGTA+AGG + contig125end:16202-16221 None:intergenic 35.0%
ATTAGGGTTTCTTCCTATGA+AGG - contig125end:11237-11256 MsG0080047837.01.T01:intron 35.0%
ATTTCTTATCATGTGCCCTA+AGG - contig125end:15071-15090 MsG0080047837.01.T01:intron 35.0%
CAACCAGCACATAATAAGAA+TGG + contig125end:15198-15217 None:intergenic 35.0%
CACTAAACCTTCATCTTCAA+TGG + contig125end:14779-14798 None:intergenic 35.0%
CCATAACTTAAAAGCAATCG+TGG + contig125end:16311-16330 None:intergenic 35.0%
CTCATCATCTTCTTTCGTAT+AGG - contig125end:14863-14882 MsG0080047837.01.T01:intron 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + contig125end:14949-14968 None:intergenic 35.0%
GAAACTAAAAATCTCACCTC+AGG + contig125end:15969-15988 None:intergenic 35.0%
GAAGACAACAGATATCCATA+CGG + contig125end:12539-12558 None:intergenic 35.0%
GACGACGATAACAAAAACAT+CGG + contig125end:11798-11817 None:intergenic 35.0%
GATTGGTAGATTTCGTAGTA+AGG - contig125end:12928-12947 MsG0080047837.01.T01:intron 35.0%
GCACCACTATATAGTACAAA+CGG + contig125end:12773-12792 None:intergenic 35.0%
GGAGTCCAAGATAAATTACA+AGG - contig125end:13649-13668 MsG0080047837.01.T01:intron 35.0%
GTCAAAAACAATAACTCCCT+TGG + contig125end:11194-11213 None:intergenic 35.0%
TAAACACCGTTAACACATAG+GGG - contig125end:12384-12403 MsG0080047837.01.T01:intron 35.0%
TAAACTCCCCTATGTGTTAA+CGG + contig125end:12393-12412 None:intergenic 35.0%
TAGCAGATTGATCCTTTGTT+TGG - contig125end:15653-15672 MsG0080047837.01.T01:intron 35.0%
TATGCTTCCATTGAAGATGA+AGG - contig125end:14769-14788 MsG0080047837.01.T01:intron 35.0%
TATGGTTGCATTGGATACAT+GGG - contig125end:12804-12823 MsG0080047837.01.T01:intron 35.0%
TCACTCACCATTGTAAATTC+TGG - contig125end:16841-16860 MsG0080047837.01.T01:CDS 35.0%
TCATCTTCTTTCGTATAGGT+GGG - contig125end:14867-14886 MsG0080047837.01.T01:intron 35.0%
TGCAAATGCATATAGGCATA+AGG + contig125end:16207-16226 None:intergenic 35.0%
TGCGGGTTCAATAGTTAAAA+TGG - contig125end:15142-15161 MsG0080047837.01.T01:intron 35.0%
TTACTGTGTTTGTCTGTCTT+GGG - contig125end:15409-15428 MsG0080047837.01.T01:intron 35.0%
TTATGGTTGCATTGGATACA+TGG - contig125end:12803-12822 MsG0080047837.01.T01:intron 35.0%
TTGAAGATGAAGGTTTAGTG+TGG - contig125end:14779-14798 MsG0080047837.01.T01:intron 35.0%
TTTACTGTGTTTGTCTGTCT+TGG - contig125end:15408-15427 MsG0080047837.01.T01:intron 35.0%
TTTACTTCTTCGTGTAGTTC+CGG - contig125end:15474-15493 MsG0080047837.01.T01:intron 35.0%
TTTCTTATCATGTGCCCTAA+GGG - contig125end:15072-15091 MsG0080047837.01.T01:intron 35.0%
! ACACCGTTAGCTTCATAAAT+AGG - contig125end:12414-12433 MsG0080047837.01.T01:intron 35.0%
! ACTGCATTTGATTTCAGCAT+CGG + contig125end:11923-11942 None:intergenic 35.0%
! AGCAGATTGATCCTTTGTTT+GGG - contig125end:15654-15673 MsG0080047837.01.T01:intron 35.0%
! ATAACTCTTGTATTGGTCGA+TGG - contig125end:11864-11883 MsG0080047837.01.T01:intron 35.0%
! CAAAACTGACCTATTTTGCA+GGG + contig125end:13742-13761 None:intergenic 35.0%
! CTGTGGAGTTTGTATTTTTC+AGG + contig125end:13410-13429 None:intergenic 35.0%
! GGAGAATAGTAGTTTTCGAA+AGG - contig125end:12318-12337 MsG0080047837.01.T01:intron 35.0%
! TAGAACCTTGATAGTTCCTA+TGG + contig125end:13004-13023 None:intergenic 35.0%
! TCTAAATGGACTCTTGACTA+AGG - contig125end:14810-14829 MsG0080047837.01.T01:intron 35.0%
! TTGGTGCTTTCCATAATACT+TGG - contig125end:15733-15752 MsG0080047837.01.T01:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - contig125end:14932-14951 MsG0080047837.01.T01:intron 35.0%
!! CTTGTTTCTATAAGCTTCTG+AGG + contig125end:13243-13262 None:intergenic 35.0%
!! GCTTCCTTTAACTTGGAATA+TGG - contig125end:12512-12531 MsG0080047837.01.T01:intron 35.0%
!! TTTGTCATGGGGTAGTTTTA+GGG - contig125end:14606-14625 MsG0080047837.01.T01:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG - contig125end:13791-13810 MsG0080047837.01.T01:intron 35.0%
!!! AAAACTGGCCTATTTTTGCA+GGG + contig125end:13802-13821 None:intergenic 35.0%
!!! ACATCGTCTAGTTTTCTTGT+CGG - contig125end:15583-15602 MsG0080047837.01.T01:intron 35.0%
!!! CCACGATTGCTTTTAAGTTA+TGG - contig125end:16308-16327 MsG0080047837.01.T01:intron 35.0%
!!! TAATTGCTCCATTTTTTCGG+TGG - contig125end:15119-15138 MsG0080047837.01.T01:intron 35.0%
AAACAATAACTCCCTTGGCA+AGG + contig125end:11189-11208 None:intergenic 40.0%
AATATCAGCGCTATCGAGAT+GGG - contig125end:16577-16596 MsG0080047837.01.T01:CDS 40.0%
ACAGAATCAGCTATCCATAC+GGG + contig125end:11470-11489 None:intergenic 40.0%
ACGATAACAAAAACATCGGC+AGG + contig125end:11794-11813 None:intergenic 40.0%
ACTTGACTATAACTAACGGC+AGG + contig125end:11697-11716 None:intergenic 40.0%
AGGACAATTAACCTAAGCTG+TGG + contig125end:13427-13446 None:intergenic 40.0%
AGTCAATTCAGTAGAGACAG+AGG - contig125end:12964-12983 MsG0080047837.01.T01:intron 40.0%
ATCATCACATAATTGGGGTC+AGG + contig125end:13956-13975 None:intergenic 40.0%
CAGGGAAGGTTATTGACAAT+TGG + contig125end:11678-11697 None:intergenic 40.0%
CGATAACAAAAACATCGGCA+GGG + contig125end:11793-11812 None:intergenic 40.0%
CTAGACGATGTAGCACAAAA+AGG + contig125end:15574-15593 None:intergenic 40.0%
CTTATTGAAGACCTTGCCAA+GGG - contig125end:11175-11194 MsG0080047837.01.T01:intron 40.0%
CTTGACTATAACTAACGGCA+GGG + contig125end:11696-11715 None:intergenic 40.0%
CTTGGTAGAAGTTTGTCATG+GGG - contig125end:14595-14614 MsG0080047837.01.T01:intron 40.0%
GAAAACGATAGTTGGGTTTG+AGG - contig125end:14647-14666 MsG0080047837.01.T01:intron 40.0%
GAAATTAGGGTTAGGGTTTG+AGG + contig125end:10696-10715 None:intergenic 40.0%
GACACTGTTGCTAAGTTTGA+TGG - contig125end:11211-11230 MsG0080047837.01.T01:intron 40.0%
GATAACAAAAACATCGGCAG+GGG + contig125end:11792-11811 None:intergenic 40.0%
GATTTCGTAGTAAGGAGAGA+TGG - contig125end:12936-12955 MsG0080047837.01.T01:intron 40.0%
GCTTCTAAACTTGTGCCTTA+AGG + contig125end:14950-14969 None:intergenic 40.0%
GGAAGACGTAGAAAAACCAT+AGG - contig125end:12985-13004 MsG0080047837.01.T01:intron 40.0%
GGGAATTAGGGATCAAAGTA+CGG + contig125end:16116-16135 None:intergenic 40.0%
GGTGGAATTGGAAGATTAAG+TGG - contig125end:12272-12291 MsG0080047837.01.T01:intron 40.0%
GTACATTTGCTTCAGTCACT+GGG - contig125end:16487-16506 MsG0080047837.01.T01:CDS 40.0%
GTAGAGGAAGAAAATTGCAG+CGG + contig125end:10867-10886 None:intergenic 40.0%
GTAGGGACTAAAACCAAAAC+TGG - contig125end:14193-14212 MsG0080047837.01.T01:intron 40.0%
TAATATCAGCGCTATCGAGA+TGG - contig125end:16576-16595 MsG0080047837.01.T01:CDS 40.0%
TATCGAGATGGGAGATATGA+TGG - contig125end:16543-16562 MsG0080047837.01.T01:CDS 40.0%
TCATCACATAATTGGGGTCA+GGG + contig125end:13955-13974 None:intergenic 40.0%
TCTCCCTGAAACTCAAAGTT+CGG - contig125end:10975-10994 MsG0080047837.01.T01:CDS 40.0%
TCTTATTGAAGACCTTGCCA+AGG - contig125end:11174-11193 MsG0080047837.01.T01:intron 40.0%
TGAAAACATTGAGAACCGCT+TGG - contig125end:12695-12714 MsG0080047837.01.T01:intron 40.0%
TGGGTATGTACAGAGAAGAT+TGG - contig125end:12911-12930 MsG0080047837.01.T01:intron 40.0%
TGTACATTTGCTTCAGTCAC+TGG - contig125end:16486-16505 MsG0080047837.01.T01:CDS 40.0%
TTGAGTCGGATTGCTTCTAA+TGG - contig125end:15498-15517 MsG0080047837.01.T01:intron 40.0%
! AGAAGAGGAAAGTACGAATC+TGG + contig125end:12045-12064 None:intergenic 40.0%
! AGTTTTCTTGTCGGCAATGT+TGG - contig125end:15592-15611 MsG0080047837.01.T01:intron 40.0%
! ATGGCACTCATGATTTGTAG+AGG - contig125end:12726-12745 MsG0080047837.01.T01:intron 40.0%
! ATTCGATTGATGTTAGCCTC+GGG - contig125end:11026-11045 MsG0080047837.01.T01:CDS 40.0%
! CCAAAACTGACCTATTTTGC+AGG + contig125end:13743-13762 None:intergenic 40.0%
! CCTGCAAAATAGGTCAGTTT+TGG - contig125end:13740-13759 MsG0080047837.01.T01:intron 40.0%
! CTGCAAAAATAGGCCAGTTT+TGG - contig125end:13801-13820 MsG0080047837.01.T01:intron 40.0%
! GAAGAGGAAAGTACGAATCT+GGG + contig125end:12044-12063 None:intergenic 40.0%
! GACTTGGTAGAAGTTTGTCA+TGG - contig125end:14593-14612 MsG0080047837.01.T01:intron 40.0%
! GATTCGATTGATGTTAGCCT+CGG - contig125end:11025-11044 MsG0080047837.01.T01:CDS 40.0%
! GTTCCGAACTTTGAGTTTCA+GGG + contig125end:10981-11000 None:intergenic 40.0%
! GTTTGTCATGGGGTAGTTTT+AGG - contig125end:14605-14624 MsG0080047837.01.T01:intron 40.0%
! TACAGAATGCTAGTTTGGTC+TGG + contig125end:13499-13518 None:intergenic 40.0%
! TGGATTGGGTTTCGGAAATT+TGG - contig125end:14741-14760 MsG0080047837.01.T01:intron 40.0%
! TGTTCCGAACTTTGAGTTTC+AGG + contig125end:10982-11001 None:intergenic 40.0%
!! AAAACTGGCCTATTTTCGCA+GGG - contig125end:14208-14227 MsG0080047837.01.T01:intron 40.0%
!! AGATGGGAGATATGATGGAT+CGG - contig125end:16548-16567 MsG0080047837.01.T01:CDS 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG + contig125end:15089-15108 None:intergenic 40.0%
!! CAAAACTGGCCTATTTTGCA+GGG - contig125end:14268-14287 MsG0080047837.01.T01:intron 40.0%
!! GTGTGGAGAGTGTTTCTAAA+TGG - contig125end:14796-14815 MsG0080047837.01.T01:intron 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG + contig125end:15090-15109 None:intergenic 40.0%
!! TTTTTGGTCCCTGCGAAAAT+AGG + contig125end:14219-14238 None:intergenic 40.0%
!!! AATGACGACGTTTTGAGGAA+GGG + contig125end:10762-10781 None:intergenic 40.0%
!!! CAAAACTGGCCTATTTTTGC+AGG + contig125end:13803-13822 None:intergenic 40.0%
!!! GTTCTGTTTCTGTGCAGTTT+TGG - contig125end:15441-15460 MsG0080047837.01.T01:intron 40.0%
AACATCAGCGCTATCGAGAT+GGG - contig125end:16532-16551 MsG0080047837.01.T01:CDS 45.0%
AACTTGGAATATGGCCCGTA+TGG - contig125end:12521-12540 MsG0080047837.01.T01:intron 45.0%
ACTATAACTAACGGCAGGGA+AGG + contig125end:11692-11711 None:intergenic 45.0%
ACTCTGCAAAACCTACACAC+TGG + contig125end:15383-15402 None:intergenic 45.0%
AGAAGCAATCCGACTCAAAC+CGG + contig125end:15496-15515 None:intergenic 45.0%
AGTAGCACCAGGTAGAAACT+AGG - contig125end:12877-12896 MsG0080047837.01.T01:intron 45.0%
AGTCGGATTGCTTCTAATGG+TGG - contig125end:15501-15520 MsG0080047837.01.T01:intron 45.0%
CAATCTTAGCGCCCAAACAA+AGG + contig125end:15668-15687 None:intergenic 45.0%
CGGGCCATATTCCAAGTTAA+AGG + contig125end:12519-12538 None:intergenic 45.0%
CTCGTTATCTTGGACTGTCA+AGG - contig125end:11889-11908 MsG0080047837.01.T01:intron 45.0%
CTTCCTCAAAACGTCGTCAT+TGG - contig125end:10761-10780 MsG0080047837.01.T01:three_prime_UTR 45.0%
GAACACGGCAACACAAACTA+AGG + contig125end:11837-11856 None:intergenic 45.0%
GAACCGCTTGGTATTTCTCA+TGG - contig125end:12707-12726 MsG0080047837.01.T01:intron 45.0%
GACGATATTAGAGAGGCAGT+TGG - contig125end:12854-12873 MsG0080047837.01.T01:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG - contig125end:14254-14273 MsG0080047837.01.T01:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG + contig125end:14273-14254 None:intergenic 45.0%
GCCCCATTCTTATTATGTGC+TGG - contig125end:15192-15211 MsG0080047837.01.T01:intron 45.0%
GTAGAGGTTTGTGTGTTTCG+TGG - contig125end:12742-12761 MsG0080047837.01.T01:intron 45.0%
GTCGGATTGCTTCTAATGGT+GGG - contig125end:15502-15521 MsG0080047837.01.T01:intron 45.0%
GTGAATCCTTTGTCCTGTCA+GGG - contig125end:15349-15368 MsG0080047837.01.T01:intron 45.0%
GTGCCATGAGAAATACCAAG+CGG + contig125end:12713-12732 None:intergenic 45.0%
TAACATCAGCGCTATCGAGA+TGG - contig125end:16531-16550 MsG0080047837.01.T01:CDS 45.0%
TACTCTGTGCTGAGTAAGGA+TGG - contig125end:14707-14726 MsG0080047837.01.T01:intron 45.0%
TATAGGTGGGTGAGGTAATC+CGG - contig125end:14880-14899 MsG0080047837.01.T01:intron 45.0%
TCAGTCACTGGGAGATATGA+TGG - contig125end:16498-16517 MsG0080047837.01.T01:CDS 45.0%
TGCTAATATCAGCGCTATCG+AGG - contig125end:16573-16592 MsG0080047837.01.T01:CDS 45.0%
TTCTTTCGTATAGGTGGGTG+AGG - contig125end:14872-14891 MsG0080047837.01.T01:intron 45.0%
! AGTGTGTAGGTTTTGCAGAG+TGG - contig125end:15382-15401 MsG0080047837.01.T01:intron 45.0%
! CAGGGGAGGTTATTGACTAT+TGG + contig125end:11775-11794 None:intergenic 45.0%
! CCTGCAAAATAGGCCAGTTT+TGG + contig125end:14270-14289 None:intergenic 45.0%
! CTGCGAAAATAGGCCAGTTT+TGG + contig125end:14209-14228 None:intergenic 45.0%
! TCACCTCAGGATAGCAGTTT+TGG + contig125end:15956-15975 None:intergenic 45.0%
!! CAAAACTGGCCTATTTTCGC+AGG - contig125end:14207-14226 MsG0080047837.01.T01:intron 45.0%
!! CACTGGGAGATATGATGGAT+CGG - contig125end:16503-16522 MsG0080047837.01.T01:CDS 45.0%
!! CCAAAACTGGCCTATTTTGC+AGG - contig125end:14267-14286 MsG0080047837.01.T01:intron 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG - contig125end:13730-13749 MsG0080047837.01.T01:intron 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG + contig125end:13749-13730 None:intergenic 45.0%
!! TGAGTTGGTGGATTGGGTTT+CGG - contig125end:14733-14752 MsG0080047837.01.T01:intron 45.0%
!!! ATGACGACGTTTTGAGGAAG+GGG + contig125end:10761-10780 None:intergenic 45.0%
!!! CAATGACGACGTTTTGAGGA+AGG + contig125end:10763-10782 None:intergenic 45.0%
AAATTGCAGCGGCGAGAAAG+AGG + contig125end:10856-10875 None:intergenic 50.0%
AACAAAAACATCGGCAGGGG+AGG + contig125end:11789-11808 None:intergenic 50.0%
AACCCGCACCACCGAAAAAA+TGG + contig125end:15130-15149 None:intergenic 50.0%
AATCCTTTGTCCTGTCAGGG+AGG - contig125end:15352-15371 MsG0080047837.01.T01:intron 50.0%
ACGCCAAAACTGCTATCCTG+AGG - contig125end:15950-15969 MsG0080047837.01.T01:intron 50.0%
ACTGTTTCGTCGCTTGATGG+TGG - contig125end:11070-11089 MsG0080047837.01.T01:intron 50.0%
AGCGTACTCTGTGCTGAGTA+AGG - contig125end:14703-14722 MsG0080047837.01.T01:intron 50.0%
ATAGGTGGGTGAGGTAATCC+GGG - contig125end:14881-14900 MsG0080047837.01.T01:intron 50.0%
ATTCGAGCTAGGTGAAGCTC+TGG + contig125end:10899-10918 None:intergenic 50.0%
CGTGAATCCTTTGTCCTGTC+AGG - contig125end:15348-15367 MsG0080047837.01.T01:intron 50.0%
CTTTGATTGGGAGAAGGCTG+TGG - contig125end:15249-15268 MsG0080047837.01.T01:intron 50.0%
GAGTAAGGATGGCAGTGAGT+TGG - contig125end:14718-14737 MsG0080047837.01.T01:intron 50.0%
GGTTGAGCTGAATTCGAGCT+AGG + contig125end:10910-10929 None:intergenic 50.0%
GTCGATGGCACTCGTTATCT+TGG - contig125end:11879-11898 MsG0080047837.01.T01:intron 50.0%
! AGGCCAATGACGACGTTTTG+AGG + contig125end:10767-10786 None:intergenic 50.0%
! CGTGTAGTTCCGGTTTGAGT+CGG - contig125end:15484-15503 MsG0080047837.01.T01:intron 50.0%
! CTGTTTCGTCGCTTGATGGT+GGG - contig125end:11071-11090 MsG0080047837.01.T01:intron 50.0%
! GCTTCTAATGGTGGGAGTGT+CGG - contig125end:15510-15529 MsG0080047837.01.T01:intron 50.0%
! TAAGGATGGCAGTGAGTTGG+TGG - contig125end:14721-14740 MsG0080047837.01.T01:intron 50.0%
! TGTCTGTCTTGGGTTGTTGC+TGG - contig125end:15419-15438 MsG0080047837.01.T01:intron 50.0%
!! AGCTAGGTGAAGCTCTGGAT+CGG + contig125end:10894-10913 None:intergenic 50.0%
!! ATGGCAGTGAGTTGGTGGAT+TGG - contig125end:14726-14745 MsG0080047837.01.T01:intron 50.0%
!! GCTTGATGGTGGGAGGATTA+GGG - contig125end:11081-11100 MsG0080047837.01.T01:intron 50.0%
!! TGGCAGTGAGTTGGTGGATT+GGG - contig125end:14727-14746 MsG0080047837.01.T01:intron 50.0%
!!! CTCCATTTTTTCGGTGGTGC+GGG - contig125end:15125-15144 MsG0080047837.01.T01:intron 50.0%
!!! GCTCCATTTTTTCGGTGGTG+CGG - contig125end:15124-15143 MsG0080047837.01.T01:intron 50.0%
!!! TGACGACGTTTTGAGGAAGG+GGG + contig125end:10760-10779 None:intergenic 50.0%
ACGGTGGATGGGGTAGTATG+AGG + contig125end:10792-10811 None:intergenic 55.0%
ACTGGAACAACCTCCCTGAC+AGG + contig125end:15365-15384 None:intergenic 55.0%
CAACCTCCCTGACAGGACAA+AGG + contig125end:15358-15377 None:intergenic 55.0%
CGGCGGTGATAAGGTAGTTG+CGG + contig125end:10826-10845 None:intergenic 55.0%
CGGTGATAAGGTAGTTGCGG+CGG + contig125end:10823-10842 None:intergenic 55.0%
CGGTGGATGGGGTAGTATGA+GGG + contig125end:10791-10810 None:intergenic 55.0%
CTTCACACGACACTGTTGCC+TGG + contig125end:15899-15918 None:intergenic 55.0%
GGATGGGGTAGTATGAGGGA+AGG + contig125end:10787-10806 None:intergenic 55.0%
GGGACTGTTTCGTCGCTTGA+TGG - contig125end:11067-11086 MsG0080047837.01.T01:CDS 55.0%
GGGAGGTTGTTCCAGTGTGT+AGG - contig125end:15369-15388 MsG0080047837.01.T01:intron 55.0%
GGGTTAGGGTTTGAGGGAAG+AGG + contig125end:10689-10708 None:intergenic 55.0%
! GAGAAAGAGGAGTACGACGG+CGG + contig125end:10843-10862 None:intergenic 55.0%
! GGCGAGAAAGAGGAGTACGA+CGG + contig125end:10846-10865 None:intergenic 55.0%
!! AATGGTGGGAGTGTCGGAGT+GGG - contig125end:15516-15535 MsG0080047837.01.T01:intron 55.0%
!! AGGTGAAGCTCTGGATCGGA+TGG + contig125end:10890-10909 None:intergenic 55.0%
!! CGCTTGATGGTGGGAGGATT+AGG - contig125end:11080-11099 MsG0080047837.01.T01:intron 55.0%
!! GGTGAAGCTCTGGATCGGAT+GGG + contig125end:10889-10908 None:intergenic 55.0%
!! TAATGGTGGGAGTGTCGGAG+TGG - contig125end:15515-15534 MsG0080047837.01.T01:intron 55.0%
!! TTTCGTCGCTTGATGGTGGG+AGG - contig125end:11074-11093 MsG0080047837.01.T01:intron 55.0%
AGTTGCGGCGGTTGTTGCGA+CGG + contig125end:10811-10830 None:intergenic 60.0%
CAGTCCCAATCTCCCGACCA+CGG + contig125end:11054-11073 None:intergenic 60.0%
CGGTTGTTGCGACGGTGGAT+GGG + contig125end:10803-10822 None:intergenic 60.0%
GAGGATTAGGGCGCGAGGTT+CGG - contig125end:11093-11112 MsG0080047837.01.T01:intron 60.0%
GAGGCAGTTGGAGTAGCACC+AGG - contig125end:12866-12885 MsG0080047837.01.T01:intron 60.0%
GGAGTACGACGGCGGTGATA+AGG + contig125end:10835-10854 None:intergenic 60.0%
GGTACCGTGGTCGGGAGATT+GGG - contig125end:11047-11066 MsG0080047837.01.T01:CDS 60.0%
GGTTGTTGCGACGGTGGATG+GGG + contig125end:10802-10821 None:intergenic 60.0%
! GATGTTAGCCTCGGGTACCG+TGG - contig125end:11034-11053 MsG0080047837.01.T01:CDS 60.0%
! GCTCTGGATCGGATGGGTAG+AGG + contig125end:10883-10902 None:intergenic 60.0%
! TTAGCCTCGGGTACCGTGGT+CGG - contig125end:11038-11057 MsG0080047837.01.T01:CDS 60.0%
GCGGTTGTTGCGACGGTGGA+TGG + contig125end:10804-10823 None:intergenic 65.0%
! GGGTACCGTGGTCGGGAGAT+TGG - contig125end:11046-11065 MsG0080047837.01.T01:CDS 65.0%
! TAGCCTCGGGTACCGTGGTC+GGG - contig125end:11039-11058 MsG0080047837.01.T01:CDS 65.0%
!! GTGGGAGTGTCGGAGTGGGT+TGG - contig125end:15520-15539 MsG0080047837.01.T01:intron 65.0%
GGTGGGAGGATTAGGGCGCG+AGG - contig125end:11088-11107 MsG0080047837.01.T01:intron 70.0%
TCTCCCGACCACGGTACCCG+AGG + contig125end:11045-11064 None:intergenic 70.0%
TGCGGCGGTTGTTGCGACGG+TGG + contig125end:10808-10827 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig125end gene 10644 16946 10644 ID=MsG0080047837.01;Name=MsG0080047837.01
contig125end mRNA 10644 16946 10644 ID=MsG0080047837.01.T01;Parent=MsG0080047837.01;Name=MsG0080047837.01.T01;_AED=0.41;_eAED=0.42;_QI=0|1|0.66|1|1|1|3|211|306
contig125end exon 10644 11088 10644 ID=MsG0080047837.01.T01:exon:34432;Parent=MsG0080047837.01.T01
contig125end exon 11619 11690 11619 ID=MsG0080047837.01.T01:exon:34431;Parent=MsG0080047837.01.T01
contig125end exon 16332 16946 16332 ID=MsG0080047837.01.T01:exon:34430;Parent=MsG0080047837.01.T01
contig125end CDS 16332 16946 16332 ID=MsG0080047837.01.T01:cds;Parent=MsG0080047837.01.T01
contig125end CDS 11619 11690 11619 ID=MsG0080047837.01.T01:cds;Parent=MsG0080047837.01.T01
contig125end CDS 10855 11088 10855 ID=MsG0080047837.01.T01:cds;Parent=MsG0080047837.01.T01
contig125end three_prime_UTR 10644 10854 10644 ID=MsG0080047837.01.T01:three_prime_utr;Parent=MsG0080047837.01.T01
Gene Sequence

>MsG0080047837.01.T01

ATGACAACAACAGGAGGGAAGGACGAGTTTGTTTCTTACTCTCCTCTTCCCTCAAACCCTAACCCTAATTTCGATTCTTATTCACACCCCTCTCAAAAAAACTCTTATTCACACCCCCTTCCTCAAAACGTCGTCATTGGCCTTCCCTCATACTACCCCATCCACCGTCGCAACAACCGCCGCAACTACCTTATCACCGCCGTCGTACTCCTCTTTCTCGCCGCTGCAATTTTCTTCCTCTACCCATCCGATCCAGAGCTTCACCTAGCTCGAATTCAGCTCAACCATATCTCAATCAAAGCAAATCCTAAACCAATTCTTGACTTATCTTTCTCCCTGAAACTCAAAGTTCGGAACAGAGATTTCTTCTCTGTTGCGTATGATTCGATTGATGTTAGCCTCGGGTACCGTGGTCGGGAGATTGGGACTGTTTCGTCGCTTGATGGTGGGAGGATTAGGGCGCGAGGTTCGGATTATGTCGATGTTGTGTTGAGTATTGATGCGTTTGAAGTGATTTATGATGCTTTTTATCTTATTGAAGACCTTGCCAAGGGAGTTATTGTTTTTGACACTGTTGCTAAGTTTGATGGAAAATTAGGGTTTCTTCCTATGAAGGCAACAGTGTCGTGTGAAGTTTATGTGAATGTATACAAGCAAACGATTGTACGCCAAAACTGCTATCCTGAGTCACTGGGAGATATGATGGATCGGAATGCTAACATCAGCGCTATCGAGATGGGAGATATGATGGATCGGAATGCTAATATCAGCGCTATCGAGATGGGAGATATGATGGATCGGAATGCTAATATCAGCGCTATCGAGATGGGAGATATGATGGATCGGAATGCTAATATCAGCGCTATCGAGATGGGAGATATGATGGATCAGAATGCTAATATCAGCGCTATCGAGGCTTGA
Protein sequence

>MsG0080047837.01.T01

MTTTGGKDEFVSYSPLPSNPNPNFDSYSHPSQKNSYSHPLPQNVVIGLPSYYPIHRRNNRRNYLITAVVLLFLAAAIFFLYPSDPELHLARIQLNHISIKANPKPILDLSFSLKLKVRNRDFFSVAYDSIDVSLGYRGREIGTVSSLDGGRIRARGSDYVDVVLSIDAFEVIYDAFYLIEDLAKGVIVFDTVAKFDGKLGFLPMKATVSCEVYVNVYKQTIVRQNCYPESLGDMMDRNANISAIEMGDMMDRNANISAIEMGDMMDRNANISAIEMGDMMDRNANISAIEMGDMMDQNANISAIEA*