AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048037.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048037.01.T01 MTR_4g107940 98.476 525 8 0 22 546 29 553 0.0 1075
MsG0080048037.01.T01 MTR_4g107940 98.234 453 8 0 22 474 29 481 0.0 921
MsG0080048037.01.T01 MTR_1g051515 95.556 45 2 0 57 101 6 50 4.84e-23 94.0
MsG0080048037.01.T01 MTR_3g078550 26.885 305 189 12 180 469 114 399 2.04e-12 69.7
MsG0080048037.01.T01 MTR_4g131180 25.143 350 224 14 50 379 22 353 2.09e-12 69.7
MsG0080048037.01.T01 MTR_4g131180 25.143 350 224 14 50 379 22 353 2.28e-12 69.7
MsG0080048037.01.T01 MTR_3g078550 26.885 305 189 12 180 469 144 429 2.32e-12 69.7
MsG0080048037.01.T01 MTR_4g107040 25.056 447 278 18 46 469 66 478 3.77e-12 69.3
MsG0080048037.01.T01 MTR_1g014320 25.836 329 209 13 50 364 22 329 4.86e-12 68.6
MsG0080048037.01.T01 MTR_3g078490 25.658 304 194 11 180 469 174 459 5.12e-12 68.9
MsG0080048037.01.T01 MTR_8g064170 25.061 411 271 15 47 443 64 451 2.25e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048037.01.T01 AT5G62530 81.599 538 94 2 10 546 23 556 0.0 947
MsG0080048037.01.T01 AT1G23800 26.087 414 263 15 47 443 57 444 7.33e-13 71.6
MsG0080048037.01.T01 AT1G74920 26.557 305 190 12 180 469 139 424 8.84e-13 71.2
MsG0080048037.01.T01 AT1G74920 26.557 305 190 12 180 469 144 429 9.27e-13 71.2
MsG0080048037.01.T01 AT1G54100 23.722 489 314 25 48 512 25 478 3.04e-11 66.2
MsG0080048037.01.T01 AT1G54100 23.722 489 314 25 48 512 25 478 3.04e-11 66.2
MsG0080048037.01.T01 AT3G48000 24.318 440 288 16 47 469 61 472 5.43e-11 65.5

Find 152 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCAGTACATGGTAAA+TGG 0.102956 contig179end:+26940 MsG0080048037.01.T01:intron
TTACCTTGCTGTCGACTTTA+AGG 0.115406 contig179end:-29541 None:intergenic
ATAAATGGCTCTCCATTTAA+AGG 0.157199 contig179end:-26996 None:intergenic
CATTCAATTCCGCAAGTTTA+TGG 0.168990 contig179end:+31371 MsG0080048037.01.T01:CDS
ATTAATGGGTGCTCTTTATA+TGG 0.169166 contig179end:+29505 MsG0080048037.01.T01:CDS
ACCAATTGTGTTGGAGGTTT+TGG 0.172418 contig179end:+31637 MsG0080048037.01.T01:CDS
AGAGAAATCATTTATGATTA+TGG 0.200880 contig179end:+32433 MsG0080048037.01.T01:CDS
ACAATTGTGGATCCTTTAAA+TGG 0.201066 contig179end:+26984 MsG0080048037.01.T01:CDS
TACCTCTCTGGTGCCTTAAA+AGG 0.253435 contig179end:-27444 None:intergenic
GATTCCAGTCCTTCAATTAA+TGG 0.260381 contig179end:+29490 MsG0080048037.01.T01:CDS
TCTTTGGCAGGTTCGTTTCC+TGG 0.273141 contig179end:+28829 MsG0080048037.01.T01:intron
GCTCTTTGGTGGAGAGCCTT+TGG 0.303385 contig179end:+31343 MsG0080048037.01.T01:CDS
TGTTCCAATCCCTGCACCTC+TGG 0.305752 contig179end:-32377 None:intergenic
TTTGAAGGGCCGCGTTAAAT+TGG 0.307383 contig179end:+30387 MsG0080048037.01.T01:CDS
ACTTCAGCGACTTTAATAAA+TGG 0.310194 contig179end:-27011 None:intergenic
TGCTGCCCAAGATGATTTCC+AGG 0.324100 contig179end:-28869 None:intergenic
TGGATTTGACTGGAAAATAT+TGG 0.328737 contig179end:+30417 MsG0080048037.01.T01:CDS
ATTTCCCAATCCTTTGATAC+TGG 0.330760 contig179end:-32457 None:intergenic
ATCCTTCACAATTTCTTCAA+TGG 0.335310 contig179end:-31423 None:intergenic
ATCTCTAGGGGAAAATTAAA+AGG 0.335493 contig179end:-29470 None:intergenic
CCGGTGAAAAGGGTCATTCT+TGG 0.338717 contig179end:-30331 None:intergenic
CTTGTGACAAAAGAAATATT+TGG 0.358791 contig179end:+31458 MsG0080048037.01.T01:CDS
GTGATTGGGAAATCAGTAAA+TGG 0.361910 contig179end:+32182 MsG0080048037.01.T01:CDS
ATAAATTTGCAGGAAGTGAT+TGG 0.362344 contig179end:+32167 MsG0080048037.01.T01:intron
GTTCCAATCCCTGCACCTCT+GGG 0.363302 contig179end:-32376 None:intergenic
CCAGCAATAGATTTGTTTGT+TGG 0.367965 contig179end:+25261 MsG0080048037.01.T01:CDS
ATTCCAGTCCTTCAATTAAT+GGG 0.374659 contig179end:+29491 MsG0080048037.01.T01:CDS
TGATAGCATTTGAGCTGCTT+TGG 0.380494 contig179end:-28197 None:intergenic
GCAGTACCTGGAAATCATCT+TGG 0.382443 contig179end:+28863 MsG0080048037.01.T01:CDS
GTCGCTGAAGTTGACGAAAC+AGG 0.387767 contig179end:+27023 MsG0080048037.01.T01:CDS
GCCGGTGACCCCAGAGGTGC+AGG 0.388688 contig179end:+32367 MsG0080048037.01.T01:CDS
AGAATAAACTTTAGGGAATC+CGG 0.391591 contig179end:+32564 MsG0080048037.01.T01:three_prime_UTR
CCAACAAACAAATCTATTGC+TGG 0.391995 contig179end:-25261 None:intergenic
TCCTTCACAATTTCTTCAAT+GGG 0.396232 contig179end:-31422 None:intergenic
CTCTTGAACTACCGGTGAAA+AGG 0.398393 contig179end:-30342 None:intergenic
AATCATAAATGATTTCTCTA+TGG 0.402141 contig179end:-32429 None:intergenic
GCACCTCTGGGGTCACCGGC+TGG 0.408608 contig179end:-32364 None:intergenic
GGTCTAAGAGCAAGGACAAC+TGG 0.410303 contig179end:+32218 MsG0080048037.01.T01:CDS
GGATTTGACTGGAAAATATT+GGG 0.410946 contig179end:+30418 MsG0080048037.01.T01:CDS
TTCTTTCAACTTAGATATCA+AGG 0.415463 contig179end:-30785 None:intergenic
CAAACCATGCTTGGGGCAGC+TGG 0.416147 contig179end:-27415 None:intergenic
TAAGAGATTAAGAAGTTAGA+TGG 0.417272 contig179end:+32507 MsG0080048037.01.T01:three_prime_UTR
GGCAGGTTCGTTTCCTGGCT+AGG 0.419273 contig179end:+28834 MsG0080048037.01.T01:intron
GACCCCAGAGGTGCAGGGAT+TGG 0.422651 contig179end:+32373 MsG0080048037.01.T01:CDS
CCAGGATCAAAGCTGCTCTT+TGG 0.425852 contig179end:+31329 MsG0080048037.01.T01:CDS
TTAATGGGTGCTCTTTATAT+GGG 0.426793 contig179end:+29506 MsG0080048037.01.T01:CDS
AGAGAATTTCTGTGGAGATC+AGG 0.428216 contig179end:+28470 MsG0080048037.01.T01:CDS
TCCAAAACCTCCAACACAAT+TGG 0.429191 contig179end:-31638 None:intergenic
CATGGCTTCCGTTGGCCATA+TGG 0.430033 contig179end:+28896 MsG0080048037.01.T01:CDS
AAAATCCTTACCGGACCATA+TGG 0.433160 contig179end:-28911 None:intergenic
GGATTGTGCAAACCATGCTT+GGG 0.433533 contig179end:-27423 None:intergenic
AGGATTGTGCAAACCATGCT+TGG 0.434635 contig179end:-27424 None:intergenic
TATGAAGTCTACATCTTCTA+CGG 0.434965 contig179end:-29991 None:intergenic
TAAGAAACCTGATGGACATC+AGG 0.435052 contig179end:-30442 None:intergenic
AATGGGTTGGATCTTCAAAC+TGG 0.440616 contig179end:+26958 MsG0080048037.01.T01:CDS
CTCCCTTTCCACACCTGAAA+AGG 0.440955 contig179end:-31482 None:intergenic
CTTTGGTGGAGAGCCTTTGG+AGG 0.444267 contig179end:+31346 MsG0080048037.01.T01:CDS
TCTTTCAGTACATGGTAAAT+GGG 0.449207 contig179end:+26941 MsG0080048037.01.T01:intron
GTTGTAGGTGAGCATTGTTA+TGG 0.449335 contig179end:+29932 MsG0080048037.01.T01:intron
AGGTTTCAGAATTCTTTGTA+AGG 0.450952 contig179end:+28376 MsG0080048037.01.T01:intron
CATAGGACTCTTCATGTTGA+AGG 0.451011 contig179end:-32484 None:intergenic
TAAATTTGCAGGAAGTGATT+GGG 0.453863 contig179end:+32168 MsG0080048037.01.T01:intron
TTCAAGAGTGGCAGAGAAGT+TGG 0.455459 contig179end:+30357 MsG0080048037.01.T01:CDS
AGTTGACGAAACAGGCGTTC+AGG 0.455504 contig179end:+27031 MsG0080048037.01.T01:CDS
ATGGACCAGTATCAAAGGAT+TGG 0.458365 contig179end:+32452 MsG0080048037.01.T01:CDS
GAAGTTGGCGGTTGATTTGA+AGG 0.459694 contig179end:+30372 MsG0080048037.01.T01:CDS
CATAAACTTGCGGAATTGAA+TGG 0.465340 contig179end:-31370 None:intergenic
TGGACCAGTATCAAAGGATT+GGG 0.469835 contig179end:+32453 MsG0080048037.01.T01:CDS
CCCTGCACCTCTGGGGTCAC+CGG 0.470946 contig179end:-32368 None:intergenic
CAGTACCTGGAAATCATCTT+GGG 0.478137 contig179end:+28864 MsG0080048037.01.T01:CDS
AAGCTATCAGACTTGACAAT+TGG 0.480723 contig179end:+30823 MsG0080048037.01.T01:CDS
TCAGTACATGGTAAATGGGT+TGG 0.480807 contig179end:+26945 MsG0080048037.01.T01:intron
AAAGAGCACCCATTAATTGA+AGG 0.482195 contig179end:-29499 None:intergenic
ATTGGGCCCTGATGTCCATC+AGG 0.486463 contig179end:+30435 MsG0080048037.01.T01:CDS
CGCGTTAAATTGGAAGATGC+TGG 0.488079 contig179end:+30397 MsG0080048037.01.T01:CDS
TCAACTACCAATTGTGTTGG+AGG 0.488211 contig179end:+31631 MsG0080048037.01.T01:CDS
CTCTGCCACTCTTGAACTAC+CGG 0.489252 contig179end:-30350 None:intergenic
AACTTCTTAATCTCTTACAT+AGG 0.489373 contig179end:-32501 None:intergenic
CAGATATGTCTCCATACATA+AGG 0.489444 contig179end:-28174 None:intergenic
ATGGGAACATAAACTGCAGT+TGG 0.492835 contig179end:-31404 None:intergenic
TGGAAGATGCTGGATTTGAC+TGG 0.493708 contig179end:+30407 MsG0080048037.01.T01:CDS
TTTCTACTACTAATTAATAC+CGG 0.495516 contig179end:-32583 None:intergenic
GGATCAAAGCTGCTCTTTGG+TGG 0.497533 contig179end:+31332 MsG0080048037.01.T01:CDS
TAAAGGATCATTTGAAACTA+CGG 0.502495 contig179end:-31687 None:intergenic
GCACCCATTAATTGAAGGAC+TGG 0.503843 contig179end:-29494 None:intergenic
CCAAAGAGCAGCTTTGATCC+TGG 0.504350 contig179end:-31329 None:intergenic
TATAAATATAAGATTGTGAA+GGG 0.504612 contig179end:-32620 None:intergenic
ATTGAAGGACTGGAATCTCT+AGG 0.504896 contig179end:-29484 None:intergenic
TTGAAGGACTGGAATCTCTA+GGG 0.508269 contig179end:-29483 None:intergenic
ATCATTGCTATTTATGCATG+AGG 0.509897 contig179end:+30612 MsG0080048037.01.T01:CDS
ATAATCTGCACATACCTCTC+TGG 0.512278 contig179end:-27456 None:intergenic
CAGAGGCCATAAAACTTGTA+TGG 0.512943 contig179end:+32401 MsG0080048037.01.T01:CDS
CCTAAGTTCAAAACTTCAGC+AGG 0.514271 contig179end:-26547 None:intergenic
TCTTGAACTACCGGTGAAAA+GGG 0.517410 contig179end:-30341 None:intergenic
TTAATACTTACAGTAAGGAC+TGG 0.527413 contig179end:-30847 None:intergenic
TCAAATGCTATCACTTCCTA+AGG 0.528341 contig179end:+28207 MsG0080048037.01.T01:CDS
CTGGACAAGCTTTCTACAAA+GGG 0.528842 contig179end:-27396 None:intergenic
CTTCCGTTGGCCATATGGTC+CGG 0.529377 contig179end:+28901 MsG0080048037.01.T01:CDS
CAACAAACAAATCTATTGCT+GGG 0.536222 contig179end:-25260 None:intergenic
TGCAGGAAGATTACACTGCA+TGG 0.538243 contig179end:+30539 MsG0080048037.01.T01:intron
CTACGCCTTCTTCATTCCTG+TGG 0.538358 contig179end:+29963 MsG0080048037.01.T01:CDS
GTAGAAGCAGAAGAGATATC+CGG 0.543562 contig179end:+26517 MsG0080048037.01.T01:CDS
CACTGCATGCATATGCATCC+TGG 0.546703 contig179end:-30570 None:intergenic
GTACTGCAAAAGACCTAGCC+AGG 0.546821 contig179end:-28847 None:intergenic
GCTGGACAAGCTTTCTACAA+AGG 0.547606 contig179end:-27397 None:intergenic
TGATTATGGACCAGTATCAA+AGG 0.551460 contig179end:+32447 MsG0080048037.01.T01:CDS
AACTTCAGCAGGCCTTGCAC+CGG 0.552141 contig179end:-26536 None:intergenic
ATGAAGTCTACATCTTCTAC+GGG 0.552312 contig179end:-29990 None:intergenic
AGCAAAGTCATGGCTTCCGT+TGG 0.553396 contig179end:+28888 MsG0080048037.01.T01:CDS
TTAATTAGTAGTAGAAAATG+AGG 0.557328 contig179end:+32589 MsG0080048037.01.T01:three_prime_UTR
ATCTTCTACGGGTAAGCCAC+AGG 0.558822 contig179end:-29979 None:intergenic
TATCTCTTCTGCTTCTACTG+TGG 0.561336 contig179end:-26512 None:intergenic
TTATGCAGGTTTGGACCAGC+CGG 0.561893 contig179end:+32349 MsG0080048037.01.T01:intron
TTGTCCAGCTGCCCCAAGCA+TGG 0.562911 contig179end:+27411 MsG0080048037.01.T01:CDS
TTCAAACTGGAATACAATTG+TGG 0.565821 contig179end:+26971 MsG0080048037.01.T01:CDS
GTAGACTTCATAAATTGTGA+TGG 0.568165 contig179end:+30002 MsG0080048037.01.T01:CDS
TGGCTAGAGGTGTATATGAA+AGG 0.569699 contig179end:-32699 None:intergenic
TTGCTGTCGACTTTAAGGAC+TGG 0.576840 contig179end:-29536 None:intergenic
CACTGCATGGGTATGTGACC+AGG 0.584855 contig179end:+30552 MsG0080048037.01.T01:CDS
CATCTTGGGCAGCAAAGTCA+TGG 0.585436 contig179end:+28878 MsG0080048037.01.T01:CDS
TTCCAATCCCTGCACCTCTG+GGG 0.591917 contig179end:-32375 None:intergenic
ATATAAATATAAGATTGTGA+AGG 0.593194 contig179end:-32621 None:intergenic
GCAGGAAGATTACACTGCAT+GGG 0.593297 contig179end:+30540 MsG0080048037.01.T01:intron
TCCCATTGAAGAAATTGTGA+AGG 0.593537 contig179end:+31421 MsG0080048037.01.T01:CDS
CTGGAGCTCCACAAAACCAC+TGG 0.594668 contig179end:+32237 MsG0080048037.01.T01:CDS
CAGTCAACTACCAATTGTGT+TGG 0.596922 contig179end:+31628 MsG0080048037.01.T01:CDS
GTAAGCCACAGGAATGAAGA+AGG 0.598802 contig179end:-29968 None:intergenic
AAGAGTGGCAGAGAAGTTGG+CGG 0.600073 contig179end:+30360 MsG0080048037.01.T01:CDS
AAGTTTCTAGAGAATTTCTG+TGG 0.603606 contig179end:+28462 MsG0080048037.01.T01:CDS
AAGTTGGCGGTTGATTTGAA+GGG 0.609509 contig179end:+30373 MsG0080048037.01.T01:CDS
AAGAAACCTGATGGACATCA+GGG 0.621935 contig179end:-30441 None:intergenic
CAGAAGAGATATCCGGTGCA+AGG 0.622527 contig179end:+26524 MsG0080048037.01.T01:CDS
TGAAGGACTGGAATCTCTAG+GGG 0.623190 contig179end:-29482 None:intergenic
TTTCACCGGTAGTTCAAGAG+TGG 0.623677 contig179end:+30345 MsG0080048037.01.T01:CDS
TTAATAGCACCATAAACTTG+CGG 0.624430 contig179end:-31380 None:intergenic
TCTGCTTCTACTGTGGCAAG+TGG 0.625864 contig179end:-26505 None:intergenic
GGAATTGAATGGTCCTCCAA+AGG 0.635379 contig179end:-31359 None:intergenic
CCGGTGACCCCAGAGGTGCA+GGG 0.637271 contig179end:+32368 MsG0080048037.01.T01:CDS
AGTCCTTAAAGTCGACAGCA+AGG 0.638175 contig179end:+29538 MsG0080048037.01.T01:CDS
CTTACGCTGGTCTAAGAGCA+AGG 0.639298 contig179end:+32210 MsG0080048037.01.T01:CDS
AATGAACAAGCTGCTACTAG+AGG 0.654674 contig179end:+30031 MsG0080048037.01.T01:CDS
GTAAATGGCACTACTTACGC+TGG 0.656115 contig179end:+32197 MsG0080048037.01.T01:CDS
CAGCATCTTCCAATTTAACG+CGG 0.656213 contig179end:-30396 None:intergenic
GGACCAGCCGGTGACCCCAG+AGG 0.656353 contig179end:+32361 MsG0080048037.01.T01:CDS
AGGACTCTTCATGTTGAAGG+AGG 0.659704 contig179end:-32481 None:intergenic
TAATACTTACAGTAAGGACT+GGG 0.667435 contig179end:-30846 None:intergenic
TTACCGGACCATATGGCCAA+CGG 0.672833 contig179end:-28904 None:intergenic
TGCAGGGATTGGAACACCAG+AGG 0.673651 contig179end:+32384 MsG0080048037.01.T01:CDS
GATTGTGCAAACCATGCTTG+GGG 0.673754 contig179end:-27422 None:intergenic
ATAAATATAAGATTGTGAAG+GGG 0.679512 contig179end:-32619 None:intergenic
TGAACTGACTCATAGTTACG+TGG 0.705875 contig179end:+25284 MsG0080048037.01.T01:CDS
CAGGATGCATATGCATGCAG+TGG 0.713797 contig179end:+30571 MsG0080048037.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATTAATATTCATG+TGG + contig179end:29139-29158 MsG0080048037.01.T01:intron 10.0%
!! CATAGTTTATATTAATTTAT+TGG + contig179end:26065-26084 MsG0080048037.01.T01:intron 10.0%
!! TATATGATAATTACAAATAA+AGG - contig179end:30226-30245 None:intergenic 10.0%
!!! AATTTTTAATATTTATTTCC+AGG + contig179end:31586-31605 MsG0080048037.01.T01:intron 10.0%
!!! ATTTTGATGAATTATATTAT+GGG - contig179end:26806-26825 None:intergenic 10.0%
!!! GGATTTTTTTTTTTTTTTAT+GGG + contig179end:27551-27570 MsG0080048037.01.T01:intron 10.0%
!!! GTATAATATTTTAATGTAAT+AGG + contig179end:28076-28095 MsG0080048037.01.T01:intron 10.0%
!!! TGGATTTTTTTTTTTTTTTA+TGG + contig179end:27550-27569 MsG0080048037.01.T01:intron 10.0%
!! AAATTAAATAAAATCCTTAC+CGG - contig179end:28923-28942 None:intergenic 15.0%
!! AATAAAAAGAAAGAGTTTAA+TGG + contig179end:31982-32001 MsG0080048037.01.T01:intron 15.0%
!! AATATAATCATGAAGTAAAT+TGG - contig179end:30129-30148 None:intergenic 15.0%
!! AATCTTACTTGTAAAAATAA+AGG - contig179end:31707-31726 None:intergenic 15.0%
!! ATAAAAAGAAAGAGTTTAAT+GGG + contig179end:31983-32002 MsG0080048037.01.T01:intron 15.0%
!! ATATAAATATAAGATTGTGA+AGG - contig179end:32624-32643 None:intergenic 15.0%
!! CATCATTATCATATTATAAA+AGG - contig179end:30275-30294 None:intergenic 15.0%
!! TAATAAAAACTTACTTCATT+TGG + contig179end:26206-26225 MsG0080048037.01.T01:intron 15.0%
!! TATAAAATGACATTGTAATA+TGG + contig179end:26761-26780 MsG0080048037.01.T01:intron 15.0%
!! TATAAATATAAGATTGTGAA+GGG - contig179end:32623-32642 None:intergenic 15.0%
!! TCAAAAAAAAAAATACACAA+TGG - contig179end:29780-29799 None:intergenic 15.0%
!! TGAAAATGTTAATTATACTT+TGG + contig179end:31817-31836 MsG0080048037.01.T01:intron 15.0%
!! TGAACTAATATTATAATTAC+AGG + contig179end:30303-30322 MsG0080048037.01.T01:intron 15.0%
!! TTTATGACTCAAATTTATTT+GGG + contig179end:31727-31746 MsG0080048037.01.T01:intron 15.0%
!!! AAGTATAATTAACATTTTCA+AGG - contig179end:31817-31836 None:intergenic 15.0%
!!! ACAAAAAAAAATATTTTGTG+AGG - contig179end:28235-28254 None:intergenic 15.0%
!!! AGATTTTTAGAATAAACTTT+AGG + contig179end:32556-32575 MsG0080048037.01.T01:three_prime_UTR 15.0%
!!! ATGCATCAATATATATATTT+TGG - contig179end:32303-32322 None:intergenic 15.0%
!!! GATTTTGATGAATTATATTA+TGG - contig179end:26807-26826 None:intergenic 15.0%
!!! GATTTTTAGAATAAACTTTA+GGG + contig179end:32557-32576 MsG0080048037.01.T01:three_prime_UTR 15.0%
!!! GTTATTTTTTGAAATATTTC+TGG + contig179end:32097-32116 MsG0080048037.01.T01:intron 15.0%
!!! TATCTTTTAAAGAGTTTAAA+GGG + contig179end:26284-26303 MsG0080048037.01.T01:intron 15.0%
!!! TGAAAATAATTTTGATTGAA+TGG + contig179end:29670-29689 MsG0080048037.01.T01:intron 15.0%
!!! TGTTTTTTAACTGATTAAAT+CGG - contig179end:25771-25790 None:intergenic 15.0%
!!! TTATAATATGATAATGATGT+TGG + contig179end:30276-30295 MsG0080048037.01.T01:intron 15.0%
!!! TTTTATGACTCAAATTTATT+TGG + contig179end:31726-31745 MsG0080048037.01.T01:intron 15.0%
!! AAAAACGATATTAATTGTCT+TGG - contig179end:30949-30968 None:intergenic 20.0%
!! AAAAGGAATATTTCAAGAAA+CGG - contig179end:27058-27077 None:intergenic 20.0%
!! AATCATAAATGATTTCTCTA+TGG - contig179end:32432-32451 None:intergenic 20.0%
!! AGAGAAATCATTTATGATTA+TGG + contig179end:32433-32452 MsG0080048037.01.T01:CDS 20.0%
!! ATAAATATAAGATTGTGAAG+GGG - contig179end:32622-32641 None:intergenic 20.0%
!! ATAATGAATGAAGATTTAGA+AGG + contig179end:26640-26659 MsG0080048037.01.T01:intron 20.0%
!! ATACACCAATGAAATAAATT+AGG - contig179end:26267-26286 None:intergenic 20.0%
!! ATATATATGTCAATGTTAGT+AGG + contig179end:31756-31775 MsG0080048037.01.T01:intron 20.0%
!! ATTCTCCTAATTTATTTCAT+TGG + contig179end:26259-26278 MsG0080048037.01.T01:intron 20.0%
!! ATTTAAAGGATATGTAATGT+GGG - contig179end:32058-32077 None:intergenic 20.0%
!! CAAAATACATGTTACTAAAA+GGG - contig179end:28047-28066 None:intergenic 20.0%
!! CAATATGAAATTGATTAAGA+TGG - contig179end:25347-25366 None:intergenic 20.0%
!! CCTATTAAGAAAAATAACAA+CGG - contig179end:26586-26605 None:intergenic 20.0%
!! CTATATTAATACTTACAGTA+AGG - contig179end:30855-30874 None:intergenic 20.0%
!! CTTACTGTAAGTATTAATAT+AGG + contig179end:30853-30872 MsG0080048037.01.T01:intron 20.0%
!! GCAAGAAAATATGATATAAT+AGG - contig179end:31785-31804 None:intergenic 20.0%
!! GTTATACTTATTCTTATCTT+AGG - contig179end:27963-27982 None:intergenic 20.0%
!! GTTGTAATGTAAACTAAAAA+TGG - contig179end:25460-25479 None:intergenic 20.0%
!! TAAGAATTTCAAATGAATTG+TGG - contig179end:31236-31255 None:intergenic 20.0%
!! TAATGAATGAAGATTTAGAA+GGG + contig179end:26641-26660 MsG0080048037.01.T01:intron 20.0%
!! TCAAAATACATGTTACTAAA+AGG - contig179end:28048-28067 None:intergenic 20.0%
!! TCAGTTAAAAAACAATGTAA+TGG + contig179end:25777-25796 MsG0080048037.01.T01:intron 20.0%
!! TTAATTAGTAGTAGAAAATG+AGG + contig179end:32589-32608 MsG0080048037.01.T01:three_prime_UTR 20.0%
!! TTGTACATAATTTATTCTTC+AGG + contig179end:28356-28375 MsG0080048037.01.T01:intron 20.0%
!! TTTCTACTACTAATTAATAC+CGG - contig179end:32586-32605 None:intergenic 20.0%
!!! AAATTTTGCAGAATATTGAA+TGG + contig179end:26615-26634 MsG0080048037.01.T01:intron 20.0%
!!! ATAAATAGAATTTTCTGTCT+TGG + contig179end:26124-26143 MsG0080048037.01.T01:intron 20.0%
!!! ATTTTTTCGTTCTTTATACA+CGG + contig179end:30650-30669 MsG0080048037.01.T01:intron 20.0%
!!! GATAAAGTTAAATTTTTCCA+GGG - contig179end:28675-28694 None:intergenic 20.0%
!!! GTATCTTTTAAAGAGTTTAA+AGG + contig179end:26283-26302 MsG0080048037.01.T01:intron 20.0%
!!! TATGTTGATTACTATTATTG+TGG + contig179end:29647-29666 MsG0080048037.01.T01:intron 20.0%
!!! TCAGTTTTAAAGTATAACAT+AGG + contig179end:29169-29188 MsG0080048037.01.T01:intron 20.0%
!!! TCTAAAAATCTAAAATTCTC+AGG - contig179end:32547-32566 None:intergenic 20.0%
!!! TGATAAAGTTAAATTTTTCC+AGG - contig179end:28676-28695 None:intergenic 20.0%
! AAAAAAAAATCCAACCTAGA+TGG - contig179end:27543-27562 None:intergenic 25.0%
! AAAAATTTACTTGAGATACC+AGG + contig179end:31311-31330 MsG0080048037.01.T01:CDS 25.0%
! AAAATGACATTGTAATATGG+TGG + contig179end:26764-26783 MsG0080048037.01.T01:intron 25.0%
! AAAATGATATATTCGCCATT+GGG - contig179end:28536-28555 None:intergenic 25.0%
! AAACACAAATTTCAGTTTGA+AGG + contig179end:27291-27310 MsG0080048037.01.T01:intron 25.0%
! AAATATTGTAAGAAACCTGA+TGG - contig179end:30453-30472 None:intergenic 25.0%
! AACAATTATTGTGTTTATGC+AGG + contig179end:32335-32354 MsG0080048037.01.T01:intron 25.0%
! AACATATTATGTACTCTAGA+AGG - contig179end:29633-29652 None:intergenic 25.0%
! AACATTTGAATGAGAACAAA+AGG - contig179end:30071-30090 None:intergenic 25.0%
! AACTTAACATGATATATCCA+AGG + contig179end:27110-27129 MsG0080048037.01.T01:intron 25.0%
! AACTTCTTAATCTCTTACAT+AGG - contig179end:32504-32523 None:intergenic 25.0%
! AATACATAATTGAGACAAGA+CGG + contig179end:29604-29623 MsG0080048037.01.T01:intron 25.0%
! AATCAGACATGATCATTTAT+GGG + contig179end:32139-32158 MsG0080048037.01.T01:intron 25.0%
! AATGTGGAAAACATTTGAAA+AGG - contig179end:27835-27854 None:intergenic 25.0%
! AATTAAAGAAGAGAACAACA+GGG - contig179end:28331-28350 None:intergenic 25.0%
! AGATTACAGAATAAACTTCT+AGG + contig179end:27872-27891 MsG0080048037.01.T01:intron 25.0%
! ATTATAATAATGAGGTGAAG+TGG - contig179end:26331-26350 None:intergenic 25.0%
! ATTGAATGGTTTATCTTCTT+TGG + contig179end:29684-29703 MsG0080048037.01.T01:intron 25.0%
! CAATTAAAGAATACCAAAGT+AGG - contig179end:28581-28600 None:intergenic 25.0%
! CAGAAATTTACAATAACACT+CGG - contig179end:26839-26858 None:intergenic 25.0%
! CATGAACTTCAAAATTTCAT+AGG - contig179end:28762-28781 None:intergenic 25.0%
! CCTGCAAGTTAATATAAAAA+AGG - contig179end:26470-26489 None:intergenic 25.0%
! CGATCACAATTATAATAATG+AGG - contig179end:26339-26358 None:intergenic 25.0%
! CTTGTGACAAAAGAAATATT+TGG + contig179end:31458-31477 MsG0080048037.01.T01:CDS 25.0%
! CTTTAAATCCAGAAATCAAT+GGG + contig179end:32070-32089 MsG0080048037.01.T01:intron 25.0%
! GATTTAAAGGATATGTAATG+TGG - contig179end:32059-32078 None:intergenic 25.0%
! GTAATAAAAGAATACATCCT+TGG - contig179end:27130-27149 None:intergenic 25.0%
! GTACATTATTAGTATCAAGT+CGG - contig179end:31890-31909 None:intergenic 25.0%
! TAAGAGATTAAGAAGTTAGA+TGG + contig179end:32507-32526 MsG0080048037.01.T01:three_prime_UTR 25.0%
! TAATCCAAGAAAACATATAC+AGG - contig179end:27513-27532 None:intergenic 25.0%
! TCTTAAACAAGTCTTAATGT+GGG + contig179end:26428-26447 MsG0080048037.01.T01:intron 25.0%
! TCTTCATTTCAACAATTCTT+TGG + contig179end:28813-28832 MsG0080048037.01.T01:intron 25.0%
! TGATACTAATAATGTACGTA+TGG + contig179end:31893-31912 MsG0080048037.01.T01:intron 25.0%
! TTCTTTCAACTTAGATATCA+AGG - contig179end:30788-30807 None:intergenic 25.0%
! TTGAATGGTTTATCTTCTTT+GGG + contig179end:29685-29704 MsG0080048037.01.T01:intron 25.0%
! TTTGCAAAATACGCATAAAT+AGG + contig179end:25417-25436 MsG0080048037.01.T01:intron 25.0%
!! AAATGATCAAGTTTGTTTGA+TGG + contig179end:25815-25834 MsG0080048037.01.T01:intron 25.0%
!! AGGTTTCTTACAATATTTTG+TGG + contig179end:30455-30474 MsG0080048037.01.T01:intron 25.0%
!! ATATTAATTGTCTTGGCTTT+CGG - contig179end:30942-30961 None:intergenic 25.0%
!! CTCTTTCTTTTTATTGTTCA+AGG - contig179end:31977-31996 None:intergenic 25.0%
!! CTGCTTTCAATAATTTTTCT+CGG + contig179end:25611-25630 MsG0080048037.01.T01:intron 25.0%
!! GTCAAAAACTAATATCGTTT+TGG - contig179end:31155-31174 None:intergenic 25.0%
!! GTTTTACTTAATAACCACAA+AGG - contig179end:29279-29298 None:intergenic 25.0%
!! TAAAGGATCATTTGAAACTA+CGG - contig179end:31690-31709 None:intergenic 25.0%
!! TTTTGTTCTCATTCAAATGT+TGG + contig179end:30070-30089 MsG0080048037.01.T01:intron 25.0%
!!! AATGCTTACTTTTATCATGA+TGG - contig179end:32722-32741 None:intergenic 25.0%
!!! AATTGACAATTTTGGAACAA+AGG - contig179end:29008-29027 None:intergenic 25.0%
!!! ATATTGGCTTGATATACATT+TGG - contig179end:29219-29238 None:intergenic 25.0%
!!! ATTTCTGGCTTTATTATATG+TGG + contig179end:32112-32131 MsG0080048037.01.T01:intron 25.0%
!!! CCGTTGTTATTTTTCTTAAT+AGG + contig179end:26583-26602 MsG0080048037.01.T01:intron 25.0%
!!! CCTTTTTTATATTAACTTGC+AGG + contig179end:26467-26486 MsG0080048037.01.T01:intron 25.0%
!!! GAATTCTCACATTCTTATTT+TGG + contig179end:28098-28117 MsG0080048037.01.T01:intron 25.0%
!!! TAACTTTTGGCTCTAATTTA+AGG + contig179end:29561-29580 MsG0080048037.01.T01:intron 25.0%
!!! TTTTTAACTGATTAAATCGG+TGG - contig179end:25768-25787 None:intergenic 25.0%
AAAAAATGCAAAAACCTCTG+GGG - contig179end:27684-27703 None:intergenic 30.0%
AAAAAGGGAAATTAAAACCC+TGG - contig179end:30746-30765 None:intergenic 30.0%
AAAGAACGAAAAAATAACCG+AGG - contig179end:30645-30664 None:intergenic 30.0%
AAGACTTCCGTAAATTTCAA+GGG - contig179end:30907-30926 None:intergenic 30.0%
AATAAACACACAAAGCAAAC+AGG - contig179end:27598-27617 None:intergenic 30.0%
AATAAATGTCAGTGCAAAGT+TGG + contig179end:32025-32044 MsG0080048037.01.T01:intron 30.0%
AATGAAACGTTGTGTAATTG+TGG + contig179end:26888-26907 MsG0080048037.01.T01:intron 30.0%
ACAAAAAATGCAAAAACCTC+TGG - contig179end:27686-27705 None:intergenic 30.0%
ACAATTGTGGATCCTTTAAA+TGG + contig179end:26984-27003 MsG0080048037.01.T01:CDS 30.0%
ACTATCAAACCCGATATATA+AGG + contig179end:25374-25393 MsG0080048037.01.T01:intron 30.0%
ACTCACATTACCATTTGAAA+AGG - contig179end:27768-27787 None:intergenic 30.0%
ACTTCAGCGACTTTAATAAA+TGG - contig179end:27014-27033 None:intergenic 30.0%
ACTTGTTTAGTCAGAAAATG+TGG - contig179end:27851-27870 None:intergenic 30.0%
AGAAAAATAACAACGGTATG+TGG - contig179end:26579-26598 None:intergenic 30.0%
AGATGGTATGTATCTGATTT+CGG - contig179end:25330-25349 None:intergenic 30.0%
AGGTTTCAGAATTCTTTGTA+AGG + contig179end:28376-28395 MsG0080048037.01.T01:intron 30.0%
ATAAATGGCTCTCCATTTAA+AGG - contig179end:26999-27018 None:intergenic 30.0%
ATAAATTTGCAGGAAGTGAT+TGG + contig179end:32167-32186 MsG0080048037.01.T01:intron 30.0%
ATAAGACCCAATAAAATTGC+AGG - contig179end:30190-30209 None:intergenic 30.0%
ATCCTTCACAATTTCTTCAA+TGG - contig179end:31426-31445 None:intergenic 30.0%
ATGAAACGTTGTGTAATTGT+GGG + contig179end:26889-26908 MsG0080048037.01.T01:intron 30.0%
ATGGGTGAAAATAAATTTGC+AGG + contig179end:32157-32176 MsG0080048037.01.T01:intron 30.0%
ATGTCCATATTAGCAATAGA+AGG - contig179end:31078-31097 None:intergenic 30.0%
ATTCCAGTCCTTCAATTAAT+GGG + contig179end:29491-29510 MsG0080048037.01.T01:CDS 30.0%
ATTCCATAGTTTGAAGAGTA+AGG - contig179end:27155-27174 None:intergenic 30.0%
CAAAAAATGCAAAAACCTCT+GGG - contig179end:27685-27704 None:intergenic 30.0%
CAAAAAGAATAAATCGCCAA+AGG - contig179end:28790-28809 None:intergenic 30.0%
CAACAAACAAATCTATTGCT+GGG - contig179end:25263-25282 None:intergenic 30.0%
CAATCAGACATGATCATTTA+TGG + contig179end:32138-32157 MsG0080048037.01.T01:intron 30.0%
CAATTAAAGAAGAGAACAAC+AGG - contig179end:28332-28351 None:intergenic 30.0%
CCATTGTGTCTATTACTATT+AGG + contig179end:29805-29824 MsG0080048037.01.T01:intron 30.0%
CCTAATAGTAATAGACACAA+TGG - contig179end:29808-29827 None:intergenic 30.0%
CCTTTAAATCCAGAAATCAA+TGG + contig179end:32069-32088 MsG0080048037.01.T01:intron 30.0%
CGAGAAAAATTATTGAAAGC+AGG - contig179end:25613-25632 None:intergenic 30.0%
CTAAATGATTGATATCCCAA+TGG + contig179end:28518-28537 MsG0080048037.01.T01:intron 30.0%
CTATCAAACCCGATATATAA+GGG + contig179end:25375-25394 MsG0080048037.01.T01:intron 30.0%
CTCTTAAACAAGTCTTAATG+TGG + contig179end:26427-26446 MsG0080048037.01.T01:intron 30.0%
GAAAATGATATATTCGCCAT+TGG - contig179end:28537-28556 None:intergenic 30.0%
GATCAGCAAAAGAAACTATA+TGG - contig179end:27636-27655 None:intergenic 30.0%
GCAAATCAAAATCATAAACG+TGG - contig179end:25402-25421 None:intergenic 30.0%
GGATATCAATCATTTAGCAA+TGG - contig179end:28515-28534 None:intergenic 30.0%
GGATTTGACTGGAAAATATT+GGG + contig179end:30418-30437 MsG0080048037.01.T01:CDS 30.0%
GGTAAGTAGATATCTTTCAA+GGG + contig179end:32258-32277 MsG0080048037.01.T01:intron 30.0%
GTAGACTTCATAAATTGTGA+TGG + contig179end:30002-30021 MsG0080048037.01.T01:CDS 30.0%
TAAATTTGCAGGAAGTGATT+GGG + contig179end:32168-32187 MsG0080048037.01.T01:intron 30.0%
TAAGACTTCCGTAAATTTCA+AGG - contig179end:30908-30927 None:intergenic 30.0%
TAATACTTACAGTAAGGACT+GGG - contig179end:30849-30868 None:intergenic 30.0%
TAGTAAAGACACAGTACATA+AGG - contig179end:30720-30739 None:intergenic 30.0%
TATGAAGTCTACATCTTCTA+CGG - contig179end:29994-30013 None:intergenic 30.0%
TATGGAATATTAAGTGACCA+AGG + contig179end:27167-27186 MsG0080048037.01.T01:intron 30.0%
TATTGTAATCTCAAAGGTGA+GGG + contig179end:29420-29439 MsG0080048037.01.T01:intron 30.0%
TCCTTCACAATTTCTTCAAT+GGG - contig179end:31425-31444 None:intergenic 30.0%
TCTGTGTATTGTAATCTCAA+AGG + contig179end:29414-29433 MsG0080048037.01.T01:intron 30.0%
TCTTTCAGTACATGGTAAAT+GGG + contig179end:26941-26960 MsG0080048037.01.T01:intron 30.0%
TGAGTATCTAATTTCCTTTG+TGG + contig179end:29262-29281 MsG0080048037.01.T01:intron 30.0%
TGGATTTGACTGGAAAATAT+TGG + contig179end:30417-30436 MsG0080048037.01.T01:CDS 30.0%
TGGTAAGTAGATATCTTTCA+AGG + contig179end:32257-32276 MsG0080048037.01.T01:intron 30.0%
TGTCCATATTAGCAATAGAA+GGG - contig179end:31077-31096 None:intergenic 30.0%
TTAATACTTACAGTAAGGAC+TGG - contig179end:30850-30869 None:intergenic 30.0%
TTAATAGCACCATAAACTTG+CGG - contig179end:31383-31402 None:intergenic 30.0%
TTATGTTGTCTGTTTACAGT+AGG + contig179end:28282-28301 MsG0080048037.01.T01:intron 30.0%
TTATTGTGTTTATGCAGGTT+TGG + contig179end:32340-32359 MsG0080048037.01.T01:intron 30.0%
TTCAAACTGGAATACAATTG+TGG + contig179end:26971-26990 MsG0080048037.01.T01:CDS 30.0%
TTCTGTAACGAAATTGAAGA+GGG - contig179end:27489-27508 None:intergenic 30.0%
TTTCTGTAACGAAATTGAAG+AGG - contig179end:27490-27509 None:intergenic 30.0%
TTTGAGCTTCAACAAAATCA+CGG - contig179end:25919-25938 None:intergenic 30.0%
! AAAACAACGTTACAGCTTTT+AGG + contig179end:31860-31879 MsG0080048037.01.T01:intron 30.0%
! AAGTTTCTAGAGAATTTCTG+TGG + contig179end:28462-28481 MsG0080048037.01.T01:CDS 30.0%
! AATTGATAGTTACCATTGAC+TGG + contig179end:28596-28615 MsG0080048037.01.T01:intron 30.0%
! ACATTGTAATATGGTGGAAA+AGG + contig179end:26770-26789 MsG0080048037.01.T01:intron 30.0%
! AGAAATATTTGGACCTTTTC+AGG + contig179end:31469-31488 MsG0080048037.01.T01:CDS 30.0%
! AGAATAAACTTTAGGGAATC+CGG + contig179end:32564-32583 MsG0080048037.01.T01:three_prime_UTR 30.0%
! ATCTCTAGGGGAAAATTAAA+AGG - contig179end:29473-29492 None:intergenic 30.0%
! ATTAATGGGTGCTCTTTATA+TGG + contig179end:29505-29524 MsG0080048037.01.T01:CDS 30.0%
! ATTTTGTTGAAGCTCAAAAG+CGG + contig179end:25921-25940 MsG0080048037.01.T01:intron 30.0%
! CATTTTCTGATACAGAATGA+TGG + contig179end:28550-28569 MsG0080048037.01.T01:intron 30.0%
! GAAACCTGTATATGTTTTCT+TGG + contig179end:27506-27525 MsG0080048037.01.T01:intron 30.0%
! GTTAAGTTTTCACAAAACAG+AGG - contig179end:27098-27117 None:intergenic 30.0%
! TTAATGGGTGCTCTTTATAT+GGG + contig179end:29506-29525 MsG0080048037.01.T01:CDS 30.0%
! TTCTTTTGCTGATCATTCAT+TGG + contig179end:27642-27661 MsG0080048037.01.T01:intron 30.0%
! TTTTCGCTTTCCTTTTCAAA+TGG + contig179end:27755-27774 MsG0080048037.01.T01:intron 30.0%
! TTTTGCAGATACCTTATGTA+TGG + contig179end:28163-28182 MsG0080048037.01.T01:intron 30.0%
! TTTTGTAGTCAGTAATAACC+TGG - contig179end:31607-31626 None:intergenic 30.0%
!! AAAAGCTGTAACGTTGTTTT+TGG - contig179end:31860-31879 None:intergenic 30.0%
!! AATATCGTTTTGGATGTACA+AGG - contig179end:31145-31164 None:intergenic 30.0%
!! AATATTTTGTGAGGTACCTT+AGG - contig179end:28226-28245 None:intergenic 30.0%
!! ATATCGTTTTGGATGTACAA+GGG - contig179end:31144-31163 None:intergenic 30.0%
!! ATCATTGCTATTTATGCATG+AGG + contig179end:30612-30631 MsG0080048037.01.T01:CDS 30.0%
!! ATTTATTGGGTCTTGTTAAC+CGG + contig179end:26079-26098 MsG0080048037.01.T01:intron 30.0%
!! CCATTGATTTCTGGATTTAA+AGG - contig179end:32072-32091 None:intergenic 30.0%
!!! AAATTGGTATGCTGTTTTGA+AGG + contig179end:28944-28963 MsG0080048037.01.T01:intron 30.0%
!!! ACAAAACAGAGGTTTTTTCA+GGG - contig179end:27087-27106 None:intergenic 30.0%
!!! GGTTAAGCAAGTTAGTTTTT+AGG + contig179end:29035-29054 MsG0080048037.01.T01:intron 30.0%
!!! TAATTTCCCTTTTTCAGAAC+TGG + contig179end:30752-30771 MsG0080048037.01.T01:intron 30.0%
!!! TTATTTTGGCCATCTTTTTG+AGG + contig179end:28112-28131 MsG0080048037.01.T01:intron 30.0%
AAACGTGGTCCCTTATATAT+CGG - contig179end:25387-25406 None:intergenic 35.0%
AAGCTATCAGACTTGACAAT+TGG + contig179end:30823-30842 MsG0080048037.01.T01:CDS 35.0%
ACCTTTAGACCTCAAAAAGA+TGG - contig179end:28124-28143 None:intergenic 35.0%
ACTCCCTTCTATTGCTAATA+TGG + contig179end:31071-31090 MsG0080048037.01.T01:intron 35.0%
ACTGTGTCTTTACTAAATCC+AGG + contig179end:30725-30744 MsG0080048037.01.T01:intron 35.0%
AGACAAAACATTCAGAGTGA+TGG - contig179end:26919-26938 None:intergenic 35.0%
AGAGGAGTAACTAAAATACC+TGG + contig179end:27917-27936 MsG0080048037.01.T01:intron 35.0%
AGCAGGAAGAACATTGTATT+TGG - contig179end:25596-25615 None:intergenic 35.0%
ATATGCCTGTGAATGTGATA+TGG + contig179end:25991-26010 MsG0080048037.01.T01:intron 35.0%
ATCAACCATATCACATTCAC+AGG - contig179end:25999-26018 None:intergenic 35.0%
ATCACTGAATTTGAGTCCTA+AGG - contig179end:25492-25511 None:intergenic 35.0%
ATGAAGTCTACATCTTCTAC+GGG - contig179end:29993-30012 None:intergenic 35.0%
ATGTAGTCACGTTCAGATAA+AGG - contig179end:30249-30268 None:intergenic 35.0%
ATTTATAGATTCCAGTGCCT+CGG - contig179end:26110-26129 None:intergenic 35.0%
ATTTCCCAATCCTTTGATAC+TGG - contig179end:32460-32479 None:intergenic 35.0%
ATTTCTTCCTTTAGTGCACT+TGG + contig179end:31180-31199 MsG0080048037.01.T01:intron 35.0%
CAAAATTGTCAATTACCTCG+TGG + contig179end:29014-29033 MsG0080048037.01.T01:intron 35.0%
CAAAGTCAAACACAAAAGCA+TGG - contig179end:31106-31125 None:intergenic 35.0%
CAAGTTTATCCTAGTTCATG+AGG - contig179end:30684-30703 None:intergenic 35.0%
CAATGCTCCCTTGAAATTTA+CGG + contig179end:30897-30916 MsG0080048037.01.T01:intron 35.0%
CAGATATGTCTCCATACATA+AGG - contig179end:28177-28196 None:intergenic 35.0%
CATAAACTTGCGGAATTGAA+TGG - contig179end:31373-31392 None:intergenic 35.0%
CATCTACTTCTATTCTTGCA+TGG - contig179end:29738-29757 None:intergenic 35.0%
CATTCAATTCCGCAAGTTTA+TGG + contig179end:31371-31390 MsG0080048037.01.T01:CDS 35.0%
CATTTCAACAATTCTTTGGC+AGG + contig179end:28817-28836 MsG0080048037.01.T01:intron 35.0%
CCAACAAACAAATCTATTGC+TGG - contig179end:25264-25283 None:intergenic 35.0%
CTCTATTCTTTCTTGATTGC+AGG + contig179end:30522-30541 MsG0080048037.01.T01:intron 35.0%
CTCTTTCAGTACATGGTAAA+TGG + contig179end:26940-26959 MsG0080048037.01.T01:intron 35.0%
CTGTCTTGGAAATATTGTCT+TGG + contig179end:26138-26157 MsG0080048037.01.T01:intron 35.0%
CTGTGTCTTTACTAAATCCA+GGG + contig179end:30726-30745 MsG0080048037.01.T01:intron 35.0%
GAAAGATATCTACTTACCAG+TGG - contig179end:32256-32275 None:intergenic 35.0%
GACTCAAATTCAGTGATTGA+GGG + contig179end:25495-25514 MsG0080048037.01.T01:intron 35.0%
GATCAATATCTACCAGTCAA+TGG - contig179end:28611-28630 None:intergenic 35.0%
GATGGTATGTATCTGATTTC+GGG - contig179end:25329-25348 None:intergenic 35.0%
GATTCCAGTCCTTCAATTAA+TGG + contig179end:29490-29509 MsG0080048037.01.T01:CDS 35.0%
GCTTAAGAATACATGATTCC+AGG - contig179end:27938-27957 None:intergenic 35.0%
GGATCAGTTTGATGAAATCA+AGG + contig179end:25888-25907 MsG0080048037.01.T01:intron 35.0%
GGGCTGATAAGTCAAAAAAT+TGG - contig179end:27379-27398 None:intergenic 35.0%
GTATTGTAATCTCAAAGGTG+AGG + contig179end:29419-29438 MsG0080048037.01.T01:intron 35.0%
GTGATTGGGAAATCAGTAAA+TGG + contig179end:32182-32201 MsG0080048037.01.T01:CDS 35.0%
TAAATCCAGAAATCAATGGG+CGG + contig179end:32073-32092 MsG0080048037.01.T01:intron 35.0%
TAACATAGGACAACAGTTTG+AGG + contig179end:29183-29202 MsG0080048037.01.T01:intron 35.0%
TCAAATGCTATCACTTCCTA+AGG + contig179end:28207-28226 MsG0080048037.01.T01:CDS 35.0%
TCCCATTGAAGAAATTGTGA+AGG + contig179end:31421-31440 MsG0080048037.01.T01:CDS 35.0%
TCTGTTTACAGTAGGATAGT+AGG + contig179end:28290-28309 MsG0080048037.01.T01:intron 35.0%
TGAAGTTCATGTCATTCCTT+TGG + contig179end:28771-28790 MsG0080048037.01.T01:intron 35.0%
TGATTATGGACCAGTATCAA+AGG + contig179end:32447-32466 MsG0080048037.01.T01:CDS 35.0%
TGCCCCAAAATTTAGATTAG+CGG + contig179end:29307-29326 MsG0080048037.01.T01:intron 35.0%
TGGATTAATGATTGCCATCT+AGG + contig179end:27526-27545 MsG0080048037.01.T01:intron 35.0%
TTAATGATTGCCATCTAGGT+TGG + contig179end:27530-27549 MsG0080048037.01.T01:intron 35.0%
TTCTCCAAAAAGTTATCAGC+AGG + contig179end:28413-28432 MsG0080048037.01.T01:CDS 35.0%
TTGTCTTCTCTTTCAGTACA+TGG + contig179end:26933-26952 MsG0080048037.01.T01:intron 35.0%
TTTAAGCTCTCTCTACAAGA+TGG + contig179end:29067-29086 MsG0080048037.01.T01:intron 35.0%
! AAAGCCTGCTGATAACTTTT+TGG - contig179end:28420-28439 None:intergenic 35.0%
! ACACAAAGCAAACAGGTTTT+CGG - contig179end:27591-27610 None:intergenic 35.0%
! ACCTCATCCTGCAATTTTAT+TGG + contig179end:30180-30199 MsG0080048037.01.T01:intron 35.0%
! ACTTTTATCATGATGGCTAG+AGG - contig179end:32715-32734 None:intergenic 35.0%
! ATTTTCTTACCAGAGCTTCA+AGG + contig179end:25557-25576 MsG0080048037.01.T01:intron 35.0%
! CACGAGGTAATTGACAATTT+TGG - contig179end:29016-29035 None:intergenic 35.0%
! CCAGCAATAGATTTGTTTGT+TGG + contig179end:25261-25280 MsG0080048037.01.T01:CDS 35.0%
! CCTCATCCTGCAATTTTATT+GGG + contig179end:30181-30200 MsG0080048037.01.T01:intron 35.0%
! GCAAGACCATACAAGTTTTA+TGG - contig179end:32410-32429 None:intergenic 35.0%
! TATGTGTCATTCACTCACTA+TGG + contig179end:28979-28998 MsG0080048037.01.T01:intron 35.0%
! TTGAAGCTCTGGTAAGAAAA+TGG - contig179end:25558-25577 None:intergenic 35.0%
! TTTGTGTTTGACTTTGTTGG+TGG + contig179end:31110-31129 MsG0080048037.01.T01:intron 35.0%
! TTTTCTTACCAGAGCTTCAA+GGG + contig179end:25558-25577 MsG0080048037.01.T01:intron 35.0%
! TTTTGCTGATCATTCATTGG+TGG + contig179end:27645-27664 MsG0080048037.01.T01:intron 35.0%
!! AAAGAGCACCCATTAATTGA+AGG - contig179end:29502-29521 None:intergenic 35.0%
!! AACCATTGACTCATTGTTGT+AGG + contig179end:29917-29936 MsG0080048037.01.T01:intron 35.0%
!! AATGTGAGTTGATCTTCAGA+TGG + contig179end:27779-27798 MsG0080048037.01.T01:intron 35.0%
!! CTTAGACCAGTTCTGAAAAA+GGG - contig179end:30761-30780 None:intergenic 35.0%
!! GCTTTTGTGTTTGACTTTGT+TGG + contig179end:31107-31126 MsG0080048037.01.T01:intron 35.0%
!! TCTTAGACCAGTTCTGAAAA+AGG - contig179end:30762-30781 None:intergenic 35.0%
!! TGGTTTGCACAATCCTTTTA+AGG + contig179end:27431-27450 MsG0080048037.01.T01:CDS 35.0%
!! TTGCTATTTATGCATGAGGT+TGG + contig179end:30616-30635 MsG0080048037.01.T01:intron 35.0%
!!! CACAAAACAGAGGTTTTTTC+AGG - contig179end:27088-27107 None:intergenic 35.0%
!!! CTGAAGTTTTGAACTTAGGT+AGG + contig179end:26551-26570 MsG0080048037.01.T01:intron 35.0%
AAAATCCTTACCGGACCATA+TGG - contig179end:28914-28933 None:intergenic 40.0%
AAACCTCTTGTCGAAGCAAT+GGG - contig179end:27204-27223 None:intergenic 40.0%
AAATCCAGAAATCAATGGGC+GGG + contig179end:32074-32093 MsG0080048037.01.T01:intron 40.0%
AACAGAAGCAGAGCAAAATG+AGG - contig179end:29834-29853 None:intergenic 40.0%
AACGTGGTCCCTTATATATC+GGG - contig179end:25386-25405 None:intergenic 40.0%
AACTGCCTGAAGAATTGACA+TGG - contig179end:29335-29354 None:intergenic 40.0%
AAGGCTATAGATGAGTCGAT+TGG + contig179end:27310-27329 MsG0080048037.01.T01:intron 40.0%
AATGAACAAGCTGCTACTAG+AGG + contig179end:30031-30050 MsG0080048037.01.T01:CDS 40.0%
AGAGAATTTCTGTGGAGATC+AGG + contig179end:28470-28489 MsG0080048037.01.T01:CDS 40.0%
ATAATCTGCACATACCTCTC+TGG - contig179end:27459-27478 None:intergenic 40.0%
ATGGACCAGTATCAAAGGAT+TGG + contig179end:32452-32471 MsG0080048037.01.T01:CDS 40.0%
ATGGGAACATAAACTGCAGT+TGG - contig179end:31407-31426 None:intergenic 40.0%
ATGGTTCAACATGATGTTGC+AGG - contig179end:25539-25558 None:intergenic 40.0%
ATTGAAGGACTGGAATCTCT+AGG - contig179end:29487-29506 None:intergenic 40.0%
CACCTACAACAATGAGTCAA+TGG - contig179end:29922-29941 None:intergenic 40.0%
CAGAGGCCATAAAACTTGTA+TGG + contig179end:32401-32420 MsG0080048037.01.T01:CDS 40.0%
CAGCATCTTCCAATTTAACG+CGG - contig179end:30399-30418 None:intergenic 40.0%
CAGTACCTGGAAATCATCTT+GGG + contig179end:28864-28883 MsG0080048037.01.T01:CDS 40.0%
CAGTCAACTACCAATTGTGT+TGG + contig179end:31628-31647 MsG0080048037.01.T01:CDS 40.0%
CATAGGACTCTTCATGTTGA+AGG - contig179end:32487-32506 None:intergenic 40.0%
CCACCTTACTCTTCAAACTA+TGG + contig179end:27149-27168 MsG0080048037.01.T01:intron 40.0%
CCATAGTTTGAAGAGTAAGG+TGG - contig179end:27152-27171 None:intergenic 40.0%
CCCAATAAAATTGCAGGATG+AGG - contig179end:30184-30203 None:intergenic 40.0%
CCTAAGTTCAAAACTTCAGC+AGG - contig179end:26550-26569 None:intergenic 40.0%
CTGGACAAGCTTTCTACAAA+GGG - contig179end:27399-27418 None:intergenic 40.0%
GATATAGAAACTATCCCCAG+AGG + contig179end:27667-27686 MsG0080048037.01.T01:intron 40.0%
GGACTCAAATTCAGTGATTG+AGG + contig179end:25494-25513 MsG0080048037.01.T01:intron 40.0%
GGCTTCATTGAAAGAACTCA+TGG - contig179end:28639-28658 None:intergenic 40.0%
GTAGAAGCAGAAGAGATATC+CGG + contig179end:26517-26536 MsG0080048037.01.T01:CDS 40.0%
GTTGAATGTCCTCATGAACT+AGG + contig179end:30672-30691 MsG0080048037.01.T01:intron 40.0%
TAAACCTCTTGTCGAAGCAA+TGG - contig179end:27205-27224 None:intergenic 40.0%
TACTTCTATTCTTGCATGGC+AGG - contig179end:29734-29753 None:intergenic 40.0%
TATCTCTTCTGCTTCTACTG+TGG - contig179end:26515-26534 None:intergenic 40.0%
TCAACTACCAATTGTGTTGG+AGG + contig179end:31631-31650 MsG0080048037.01.T01:CDS 40.0%
TCAGTACATGGTAAATGGGT+TGG + contig179end:26945-26964 MsG0080048037.01.T01:intron 40.0%
TCCAAAACCTCCAACACAAT+TGG - contig179end:31641-31660 None:intergenic 40.0%
TCTTGAACTACCGGTGAAAA+GGG - contig179end:30344-30363 None:intergenic 40.0%
TGAAACTGTGTGTTCGCATT+GGG + contig179end:26387-26406 MsG0080048037.01.T01:intron 40.0%
TGATAGCATTTGAGCTGCTT+TGG - contig179end:28200-28219 None:intergenic 40.0%
TGGACCAGTATCAAAGGATT+GGG + contig179end:32453-32472 MsG0080048037.01.T01:CDS 40.0%
TGTTCTTCCAAGTGCACTAA+AGG - contig179end:31190-31209 None:intergenic 40.0%
TTACAACTCTCACTCACCTT+AGG + contig179end:25473-25492 MsG0080048037.01.T01:intron 40.0%
TTGAAGGACTGGAATCTCTA+GGG - contig179end:29486-29505 None:intergenic 40.0%
TTTATAGATTCCAGTGCCTC+GGG - contig179end:26109-26128 None:intergenic 40.0%
TTTGCAGAAGTCGACTAACT+GGG - contig179end:27898-27917 None:intergenic 40.0%
! AAGAAACCTGATGGACATCA+GGG - contig179end:30444-30463 None:intergenic 40.0%
! AAGTTATCAGCAGGCTTTTG+CGG + contig179end:28422-28441 MsG0080048037.01.T01:CDS 40.0%
! AATGATGGAAGAGCCTACTT+TGG + contig179end:28565-28584 MsG0080048037.01.T01:intron 40.0%
! ACCAATTGTGTTGGAGGTTT+TGG + contig179end:31637-31656 MsG0080048037.01.T01:CDS 40.0%
! AGGTGAAGTGGCAAAGTATT+AGG - contig179end:26319-26338 None:intergenic 40.0%
! CGCCGCTAATCTAAATTTTG+GGG - contig179end:29312-29331 None:intergenic 40.0%
! GCGCCGCTAATCTAAATTTT+GGG - contig179end:29313-29332 None:intergenic 40.0%
! GCTCTGCTTCTGTTGAATTT+TGG + contig179end:29840-29859 MsG0080048037.01.T01:intron 40.0%
! GGTGAAGTGGCAAAGTATTA+GGG - contig179end:26318-26337 None:intergenic 40.0%
! GTTGTAGGTGAGCATTGTTA+TGG + contig179end:29932-29951 MsG0080048037.01.T01:intron 40.0%
! TAAGAAACCTGATGGACATC+AGG - contig179end:30445-30464 None:intergenic 40.0%
! TGAACTGACTCATAGTTACG+TGG + contig179end:25284-25303 MsG0080048037.01.T01:CDS 40.0%
! TGGCTAGAGGTGTATATGAA+AGG - contig179end:32702-32721 None:intergenic 40.0%
! TGTTCTGCATGTTTGAGATC+AGG + contig179end:25867-25886 MsG0080048037.01.T01:intron 40.0%
!! AACTAACTTGCTTAACCACG+AGG - contig179end:29032-29051 None:intergenic 40.0%
!! AAGTTGGCGGTTGATTTGAA+GGG + contig179end:30373-30392 MsG0080048037.01.T01:CDS 40.0%
!! AATGGGTTGGATCTTCAAAC+TGG + contig179end:26958-26977 MsG0080048037.01.T01:CDS 40.0%
!! CATACAAGTTTTATGGCCTC+TGG - contig179end:32403-32422 None:intergenic 40.0%
!! GGTTTATCTTCTTTGGGATG+AGG + contig179end:29691-29710 MsG0080048037.01.T01:intron 40.0%
!! TCTACTTACCAGTGGTTTTG+TGG - contig179end:32248-32267 None:intergenic 40.0%
!! TGAGTTGATCTTCAGATGGT+TGG + contig179end:27783-27802 MsG0080048037.01.T01:intron 40.0%
!! TTACCTTGCTGTCGACTTTA+AGG - contig179end:29544-29563 None:intergenic 40.0%
!!! CCTGCTGAAGTTTTGAACTT+AGG + contig179end:26547-26566 MsG0080048037.01.T01:CDS 40.0%
!!! GCCATCTTTTTGAGGTCTAA+AGG + contig179end:28120-28139 MsG0080048037.01.T01:intron 40.0%
!!! TATTTGGACCTTTTCAGGTG+TGG + contig179end:31474-31493 MsG0080048037.01.T01:intron 40.0%
!!! TTTTTTCAGGGCTCGACAAA+AGG - contig179end:27075-27094 None:intergenic 40.0%
AACAAGCTGCTACTAGAGGT+TGG + contig179end:30035-30054 MsG0080048037.01.T01:intron 45.0%
AAGCCTCTGTGTGTAAGACA+GGG + contig179end:27237-27256 MsG0080048037.01.T01:intron 45.0%
AATCCAGAAATCAATGGGCG+GGG + contig179end:32075-32094 MsG0080048037.01.T01:intron 45.0%
AATGGGTATAGGCAATGCCT+TGG - contig179end:27187-27206 None:intergenic 45.0%
ACACACACACACAACAAGGA+GGG + contig179end:28697-28716 MsG0080048037.01.T01:intron 45.0%
AGAAGAAACCCTTGAAGCTC+TGG - contig179end:25569-25588 None:intergenic 45.0%
AGGACTCTTCATGTTGAAGG+AGG - contig179end:32484-32503 None:intergenic 45.0%
AGGATTGTGCAAACCATGCT+TGG - contig179end:27427-27446 None:intergenic 45.0%
AGTCCTTAAAGTCGACAGCA+AGG + contig179end:29538-29557 MsG0080048037.01.T01:CDS 45.0%
ATACCCATTGCTTCGACAAG+AGG + contig179end:27198-27217 MsG0080048037.01.T01:intron 45.0%
CAGACACAGAGACACTCATT+AGG - contig179end:29359-29378 None:intergenic 45.0%
CGCGTTAAATTGGAAGATGC+TGG + contig179end:30397-30416 MsG0080048037.01.T01:CDS 45.0%
CTAATGAGTGTCTCTGTGTC+TGG + contig179end:29357-29376 MsG0080048037.01.T01:intron 45.0%
CTCTTGAACTACCGGTGAAA+AGG - contig179end:30345-30364 None:intergenic 45.0%
CTTGTCGAAGCAATGGGTAT+AGG - contig179end:27198-27217 None:intergenic 45.0%
CTTTGCAGAAGTCGACTAAC+TGG - contig179end:27899-27918 None:intergenic 45.0%
GATTGTGCAAACCATGCTTG+GGG - contig179end:27425-27444 None:intergenic 45.0%
GCACCCATTAATTGAAGGAC+TGG - contig179end:29497-29516 None:intergenic 45.0%
GCAGGAAGATTACACTGCAT+GGG + contig179end:30540-30559 MsG0080048037.01.T01:intron 45.0%
GCAGTACCTGGAAATCATCT+TGG + contig179end:28863-28882 MsG0080048037.01.T01:CDS 45.0%
GCTGGACAAGCTTTCTACAA+AGG - contig179end:27400-27419 None:intergenic 45.0%
GGAATTGAATGGTCCTCCAA+AGG - contig179end:31362-31381 None:intergenic 45.0%
GGATTGTGCAAACCATGCTT+GGG - contig179end:27426-27445 None:intergenic 45.0%
GTAAATGGCACTACTTACGC+TGG + contig179end:32197-32216 MsG0080048037.01.T01:CDS 45.0%
GTAAGCCACAGGAATGAAGA+AGG - contig179end:29971-29990 None:intergenic 45.0%
GTGAAACTGTGTGTTCGCAT+TGG + contig179end:26386-26405 MsG0080048037.01.T01:intron 45.0%
TAAGCCTCTGTGTGTAAGAC+AGG + contig179end:27236-27255 MsG0080048037.01.T01:intron 45.0%
TACCTCTCTGGTGCCTTAAA+AGG - contig179end:27447-27466 None:intergenic 45.0%
TCACACACACACACACAACA+AGG + contig179end:28693-28712 MsG0080048037.01.T01:intron 45.0%
TGAAGGACTGGAATCTCTAG+GGG - contig179end:29485-29504 None:intergenic 45.0%
TGCAGGAAGATTACACTGCA+TGG + contig179end:30539-30558 MsG0080048037.01.T01:intron 45.0%
TGGAAGATGCTGGATTTGAC+TGG + contig179end:30407-30426 MsG0080048037.01.T01:CDS 45.0%
TGTGGATTCCAGAATGACAC+TGG + contig179end:30473-30492 MsG0080048037.01.T01:intron 45.0%
TTATAGATTCCAGTGCCTCG+GGG - contig179end:26108-26127 None:intergenic 45.0%
TTCAAGAGTGGCAGAGAAGT+TGG + contig179end:30357-30376 MsG0080048037.01.T01:CDS 45.0%
TTCCAGGGACAGAAGAATTC+AGG - contig179end:28660-28679 None:intergenic 45.0%
TTTCACCGGTAGTTCAAGAG+TGG + contig179end:30345-30364 MsG0080048037.01.T01:CDS 45.0%
TTTGAAGGGCCGCGTTAAAT+TGG + contig179end:30387-30406 MsG0080048037.01.T01:CDS 45.0%
TTTGGATGTACAAGGGCTCA+TGG - contig179end:31137-31156 None:intergenic 45.0%
! ATTCCAGAATGACACTGGCT+CGG + contig179end:30478-30497 MsG0080048037.01.T01:intron 45.0%
! CAGGTTTTCGGTGAACAATG+AGG - contig179end:27579-27598 None:intergenic 45.0%
! CCAAGAATGACCCTTTTCAC+CGG + contig179end:30331-30350 MsG0080048037.01.T01:CDS 45.0%
! GGCGCCGCTAATCTAAATTT+TGG - contig179end:29314-29333 None:intergenic 45.0%
! GTCGACAGCAAGGTAACTTT+TGG + contig179end:29548-29567 MsG0080048037.01.T01:intron 45.0%
! GTTAGTCGACTTCTGCAAAG+AGG + contig179end:27899-27918 MsG0080048037.01.T01:intron 45.0%
!! GAAGTTGGCGGTTGATTTGA+AGG + contig179end:30372-30391 MsG0080048037.01.T01:CDS 45.0%
!! TTGCTGTCGACTTTAAGGAC+TGG - contig179end:29539-29558 None:intergenic 45.0%
!! TTTGGTGCTTAACCAATGCC+CGG + contig179end:26224-26243 MsG0080048037.01.T01:intron 45.0%
!!! ATCCTTTTAAGGCACCAGAG+AGG + contig179end:27442-27461 MsG0080048037.01.T01:CDS 45.0%
!!! GACCTTTTCAGGTGTGGAAA+GGG + contig179end:31480-31499 MsG0080048037.01.T01:intron 45.0%
!! ATAGTTTATATTAATTTATT+GGG + contig179end:26066-26085 MsG0080048037.01.T01:intron 5.0%
!!! AAATTATATTTTGAAAATAA+AGG - contig179end:31541-31560 None:intergenic 5.0%
!!! GATTTTATTTAATTTTAAAT+TGG + contig179end:28928-28947 MsG0080048037.01.T01:intron 5.0%
!!! TTTTATTTTAATTATATGAA+TGG + contig179end:30965-30984 MsG0080048037.01.T01:intron 5.0%
AAGAGTGGCAGAGAAGTTGG+CGG + contig179end:30360-30379 MsG0080048037.01.T01:CDS 50.0%
ACACACACACAACAAGGAGG+GGG + contig179end:28699-28718 MsG0080048037.01.T01:intron 50.0%
AGCAAAGTCATGGCTTCCGT+TGG + contig179end:28888-28907 MsG0080048037.01.T01:CDS 50.0%
AGCCTGAATTCTTCTGTCCC+TGG + contig179end:28655-28674 MsG0080048037.01.T01:intron 50.0%
AGTTGACGAAACAGGCGTTC+AGG + contig179end:27031-27050 MsG0080048037.01.T01:CDS 50.0%
ATCTTCTACGGGTAAGCCAC+AGG - contig179end:29982-30001 None:intergenic 50.0%
CACACACACACAACAAGGAG+GGG + contig179end:28698-28717 MsG0080048037.01.T01:intron 50.0%
CACACACACACACAACAAGG+AGG + contig179end:28696-28715 MsG0080048037.01.T01:intron 50.0%
CACTGCATGCATATGCATCC+TGG - contig179end:30573-30592 None:intergenic 50.0%
CAGAAGAGATATCCGGTGCA+AGG + contig179end:26524-26543 MsG0080048037.01.T01:CDS 50.0%
CAGGATGCATATGCATGCAG+TGG + contig179end:30571-30590 MsG0080048037.01.T01:CDS 50.0%
CATCTTGGGCAGCAAAGTCA+TGG + contig179end:28878-28897 MsG0080048037.01.T01:CDS 50.0%
CCAGGATCAAAGCTGCTCTT+TGG + contig179end:31329-31348 MsG0080048037.01.T01:CDS 50.0%
CCGGTGAAAAGGGTCATTCT+TGG - contig179end:30334-30353 None:intergenic 50.0%
CTACGCCTTCTTCATTCCTG+TGG + contig179end:29963-29982 MsG0080048037.01.T01:CDS 50.0%
CTCCCTTTCCACACCTGAAA+AGG - contig179end:31485-31504 None:intergenic 50.0%
CTCTGCCACTCTTGAACTAC+CGG - contig179end:30353-30372 None:intergenic 50.0%
GAACCCTGTCTTACACACAG+AGG - contig179end:27243-27262 None:intergenic 50.0%
GGATCAAAGCTGCTCTTTGG+TGG + contig179end:31332-31351 MsG0080048037.01.T01:CDS 50.0%
GGTCTAAGAGCAAGGACAAC+TGG + contig179end:32218-32237 MsG0080048037.01.T01:CDS 50.0%
GTACTGCAAAAGACCTAGCC+AGG - contig179end:28850-28869 None:intergenic 50.0%
GTCGCTGAAGTTGACGAAAC+AGG + contig179end:27023-27042 MsG0080048037.01.T01:CDS 50.0%
TATAGATTCCAGTGCCTCGG+GGG - contig179end:26107-26126 None:intergenic 50.0%
TCTGCTTCTACTGTGGCAAG+TGG - contig179end:26508-26527 None:intergenic 50.0%
TCTTTGGCAGGTTCGTTTCC+TGG + contig179end:28829-28848 MsG0080048037.01.T01:intron 50.0%
TGCTGCCCAAGATGATTTCC+AGG - contig179end:28872-28891 None:intergenic 50.0%
TTACCGGACCATATGGCCAA+CGG - contig179end:28907-28926 None:intergenic 50.0%
TTATGCAGGTTTGGACCAGC+CGG + contig179end:32349-32368 MsG0080048037.01.T01:intron 50.0%
! AAACCGAGCCAGTGTCATTC+TGG - contig179end:30484-30503 None:intergenic 50.0%
! AAGGTGAGGGTTTGTTCTGC+AGG + contig179end:29433-29452 MsG0080048037.01.T01:intron 50.0%
! ATGCATGAGGTTGGTCACCT+CGG + contig179end:30625-30644 MsG0080048037.01.T01:intron 50.0%
! CCAAAGAGCAGCTTTGATCC+TGG - contig179end:31332-31351 None:intergenic 50.0%
! CTTACGCTGGTCTAAGAGCA+AGG + contig179end:32210-32229 MsG0080048037.01.T01:CDS 50.0%
! GCTAGGTCTTTTGCAGTACC+TGG + contig179end:28851-28870 MsG0080048037.01.T01:CDS 50.0%
! TTGGTGCTTAACCAATGCCC+GGG + contig179end:26225-26244 MsG0080048037.01.T01:intron 50.0%
!! TAACCCCGCCCATTGATTTC+TGG - contig179end:32081-32100 None:intergenic 50.0%
!!! GGACCTTTTCAGGTGTGGAA+AGG + contig179end:31479-31498 MsG0080048037.01.T01:intron 50.0%
AACTTCAGCAGGCCTTGCAC+CGG - contig179end:26539-26558 None:intergenic 55.0%
ATTGGGCCCTGATGTCCATC+AGG + contig179end:30435-30454 MsG0080048037.01.T01:CDS 55.0%
CACACACACAACAAGGAGGG+GGG + contig179end:28700-28719 MsG0080048037.01.T01:intron 55.0%
CACTGCATGGGTATGTGACC+AGG + contig179end:30552-30571 MsG0080048037.01.T01:CDS 55.0%
CAGGTGTGGAAAGGGAGTCT+TGG + contig179end:31488-31507 MsG0080048037.01.T01:intron 55.0%
CATGGCTTCCGTTGGCCATA+TGG + contig179end:28896-28915 MsG0080048037.01.T01:CDS 55.0%
CGGCGCCATGTCAATTCTTC+AGG + contig179end:29327-29346 MsG0080048037.01.T01:intron 55.0%
CTGGAGCTCCACAAAACCAC+TGG + contig179end:32237-32256 MsG0080048037.01.T01:CDS 55.0%
CTTCCGTTGGCCATATGGTC+CGG + contig179end:28901-28920 MsG0080048037.01.T01:CDS 55.0%
CTTTGGTGGAGAGCCTTTGG+AGG + contig179end:31346-31365 MsG0080048037.01.T01:CDS 55.0%
GAGAATGTTAACCAGCCCCC+GGG - contig179end:26245-26264 None:intergenic 55.0%
GCTCTTTGGTGGAGAGCCTT+TGG + contig179end:31343-31362 MsG0080048037.01.T01:CDS 55.0%
GGAGAATGTTAACCAGCCCC+CGG - contig179end:26246-26265 None:intergenic 55.0%
GTGTGTTCGCATTGGGTGTC+AGG + contig179end:26394-26413 MsG0080048037.01.T01:intron 55.0%
GTTCCAATCCCTGCACCTCT+GGG - contig179end:32379-32398 None:intergenic 55.0%
GTTGGCCATATGGTCCGGTA+AGG + contig179end:28906-28925 MsG0080048037.01.T01:intron 55.0%
TGCAGGGATTGGAACACCAG+AGG + contig179end:32384-32403 MsG0080048037.01.T01:CDS 55.0%
TGGTGCTTAACCAATGCCCG+GGG + contig179end:26226-26245 MsG0080048037.01.T01:intron 55.0%
TGTTCCAATCCCTGCACCTC+TGG - contig179end:32380-32399 None:intergenic 55.0%
TTCCAATCCCTGCACCTCTG+GGG - contig179end:32378-32397 None:intergenic 55.0%
! GTGAGGGTTTGTTCTGCAGG+TGG + contig179end:29436-29455 MsG0080048037.01.T01:intron 55.0%
CAAACCATGCTTGGGGCAGC+TGG - contig179end:27418-27437 None:intergenic 60.0%
GGCAGGTTCGTTTCCTGGCT+AGG + contig179end:28834-28853 MsG0080048037.01.T01:intron 60.0%
GGTGCTTAACCAATGCCCGG+GGG + contig179end:26227-26246 MsG0080048037.01.T01:intron 60.0%
TTGTCCAGCTGCCCCAAGCA+TGG + contig179end:27411-27430 MsG0080048037.01.T01:CDS 60.0%
CTTAACCAATGCCCGGGGGC+TGG + contig179end:26231-26250 MsG0080048037.01.T01:intron 65.0%
CTTGTTAACCGGAGCCCCCG+AGG + contig179end:26090-26109 MsG0080048037.01.T01:intron 65.0%
GTTAACCAGCCCCCGGGCAT+TGG - contig179end:26239-26258 None:intergenic 65.0%
! GACCCCAGAGGTGCAGGGAT+TGG + contig179end:32373-32392 MsG0080048037.01.T01:CDS 65.0%
TTCCAGTGCCTCGGGGGCTC+CGG - contig179end:26101-26120 None:intergenic 70.0%
! CCGGTGACCCCAGAGGTGCA+GGG + contig179end:32368-32387 MsG0080048037.01.T01:CDS 70.0%
!! CCCTGCACCTCTGGGGTCAC+CGG - contig179end:32371-32390 None:intergenic 70.0%
AACCGGAGCCCCCGAGGCAC+TGG + contig179end:26096-26115 MsG0080048037.01.T01:intron 75.0%
GGACCAGCCGGTGACCCCAG+AGG + contig179end:32361-32380 MsG0080048037.01.T01:CDS 75.0%
! GCCGGTGACCCCAGAGGTGC+AGG + contig179end:32367-32386 MsG0080048037.01.T01:CDS 75.0%
!! GCACCTCTGGGGTCACCGGC+TGG - contig179end:32367-32386 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
contig179end gene 25252 32745 25252 ID=MsG0080048037.01;Name=MsG0080048037.01
contig179end mRNA 25252 32745 25252 ID=MsG0080048037.01.T01;Parent=MsG0080048037.01;Name=MsG0080048037.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.93|0.93|1|1|1|16|250|546
contig179end exon 32357 32745 32357 ID=MsG0080048037.01.T01:exon:7880;Parent=MsG0080048037.01.T01
contig179end exon 32179 32258 32179 ID=MsG0080048037.01.T01:exon:7879;Parent=MsG0080048037.01.T01
contig179end exon 31608 31718 31608 ID=MsG0080048037.01.T01:exon:7878;Parent=MsG0080048037.01.T01
contig179end exon 31281 31490 31281 ID=MsG0080048037.01.T01:exon:7877;Parent=MsG0080048037.01.T01
contig179end exon 30769 30858 30769 ID=MsG0080048037.01.T01:exon:7876;Parent=MsG0080048037.01.T01
contig179end exon 30544 30633 30544 ID=MsG0080048037.01.T01:exon:7875;Parent=MsG0080048037.01.T01
contig179end exon 30325 30456 30325 ID=MsG0080048037.01.T01:exon:7874;Parent=MsG0080048037.01.T01
contig179end exon 29939 30052 29939 ID=MsG0080048037.01.T01:exon:7873;Parent=MsG0080048037.01.T01
contig179end exon 29455 29559 29455 ID=MsG0080048037.01.T01:exon:7872;Parent=MsG0080048037.01.T01
contig179end exon 28839 28922 28839 ID=MsG0080048037.01.T01:exon:7871;Parent=MsG0080048037.01.T01
contig179end exon 28378 28491 28378 ID=MsG0080048037.01.T01:exon:7870;Parent=MsG0080048037.01.T01
contig179end exon 28171 28228 28171 ID=MsG0080048037.01.T01:exon:7869;Parent=MsG0080048037.01.T01
contig179end exon 27396 27463 27396 ID=MsG0080048037.01.T01:exon:7868;Parent=MsG0080048037.01.T01
contig179end exon 26949 27052 26949 ID=MsG0080048037.01.T01:exon:7867;Parent=MsG0080048037.01.T01
contig179end exon 26489 26568 26489 ID=MsG0080048037.01.T01:exon:7866;Parent=MsG0080048037.01.T01
contig179end exon 25252 25313 25252 ID=MsG0080048037.01.T01:exon:7865;Parent=MsG0080048037.01.T01
contig179end CDS 25252 25313 25252 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 26489 26568 26489 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 26949 27052 26949 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 27396 27463 27396 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 28171 28228 28171 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 28378 28491 28378 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 28839 28922 28839 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 29455 29559 29455 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 29939 30052 29939 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 30325 30456 30325 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 30544 30633 30544 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 30769 30858 30769 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 31281 31490 31281 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 31608 31718 31608 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 32179 32258 32179 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end CDS 32357 32495 32357 ID=MsG0080048037.01.T01:cds;Parent=MsG0080048037.01.T01
contig179end three_prime_UTR 32496 32745 32496 ID=MsG0080048037.01.T01:three_prime_utr;Parent=MsG0080048037.01.T01
Gene Sequence

>MsG0080048037.01.T01

ATGGAAGACCCAGCAATAGATTTGTTTGTTGGTGAACTGACTCATAGTTACGTGGATCACATGTCTGTCAGTTCAATACCACTTGCCACAGTAGAAGCAGAAGAGATATCCGGTGCAAGGCCTGCTGAAGTTTTGAACTTAGTACATGGTAAATGGGTTGGATCTTCAAACTGGAATACAATTGTGGATCCTTTAAATGGAGAGCCATTTATTAAAGTCGCTGAAGTTGACGAAACAGGCGTTCAGCCCTTTGTAGAAAGCTTGTCCAGCTGCCCCAAGCATGGTTTGCACAATCCTTTTAAGGCACCAGAGAGATACCTTATGTATGGAGACATATCTGCCAAAGCAGCTCAAATGCTATCACTTCCTAAGGTTTCAGAATTCTTTGTAAGGCTAATACAGAGAGTTTCTCCAAAAAGTTATCAGCAGGCTTTTGCGGAAGTTTATGTGACACAAAAGTTTCTAGAGAATTTCTGTGGAGATCAGGTTCGTTTCCTGGCTAGGTCTTTTGCAGTACCTGGAAATCATCTTGGGCAGCAAAGTCATGGCTTCCGTTGGCCATATGGTCCGGTGGCAATTATTACTCCTTTTAATTTTCCCCTAGAGATTCCAGTCCTTCAATTAATGGGTGCTCTTTATATGGGCAACAAGCCAGTCCTTAAAGTCGACAGCAAGGTGAGCATTGTTATGGAGCAAATGCTACGCCTTCTTCATTCCTGTGGCTTACCCGTAGAAGATGTAGACTTCATAAATTGTGATGGAAAGACAATGAACAAGCTGCTACTAGAGGCAAATCCAAGAATGACCCTTTTCACCGGTAGTTCAAGAGTGGCAGAGAAGTTGGCGGTTGATTTGAAGGGCCGCGTTAAATTGGAAGATGCTGGATTTGACTGGAAAATATTGGGCCCTGATGTCCATCAGGAAGATTACACTGCATGGGTATGTGACCAGGATGCATATGCATGCAGTGGTCAGAAGTGCTCAGCACAATCATTGCTATTTATGCATGAGAACTGGTCTAAGACTTCCTTGATATCTAAGTTGAAAGAACTTGCTGAGAGAAGAAAGCTATCAGACTTGACAATTGGCCCAGTCCTTACTTTTACAACTAAATCATTGCTTGAGCACACAAAAAATTTACTTGAGATACCAGGATCAAAGCTGCTCTTTGGTGGAGAGCCTTTGGAGGACCATTCAATTCCGCAAGTTTATGGTGCTATTAAACCAACTGCAGTTTATGTTCCCATTGAAGAAATTGTGAAGGATAAGAATTACAAGCTTGTGACAAAAGAAATATTTGGACCTTTTCAGGTTATTACTGACTACAAAAGCAGTCAACTACCAATTGTGTTGGAGGTTTTGGAAAAAATGCATGCACATTTAACTGCTGCCGTAGTTTCAAATGATCCTTTATTTTTACAAGAAGTGATTGGGAAATCAGTAAATGGCACTACTTACGCTGGTCTAAGAGCAAGGACAACTGGAGCTCCACAAAACCACTGGTTTGGACCAGCCGGTGACCCCAGAGGTGCAGGGATTGGAACACCAGAGGCCATAAAACTTGTATGGTCTTGCCATAGAGAAATCATTTATGATTATGGACCAGTATCAAAGGATTGGGAAATTCCTCCTTCAACATGA
Protein sequence

>MsG0080048037.01.T01

MEDPAIDLFVGELTHSYVDHMSVSSIPLATVEAEEISGARPAEVLNLVHGKWVGSSNWNTIVDPLNGEPFIKVAEVDETGVQPFVESLSSCPKHGLHNPFKAPERYLMYGDISAKAAQMLSLPKVSEFFVRLIQRVSPKSYQQAFAEVYVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHSCGLPVEDVDFINCDGKTMNKLLLEANPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYTAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLISKLKELAERRKLSDLTIGPVLTFTTKSLLEHTKNLLEIPGSKLLFGGEPLEDHSIPQVYGAIKPTAVYVPIEEIVKDKNYKLVTKEIFGPFQVITDYKSSQLPIVLEVLEKMHAHLTAAVVSNDPLFLQEVIGKSVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDYGPVSKDWEIPPST*