AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048367.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048367.01.T01 MTR_2g061380 81.848 303 11 2 229 488 1434 1735 6.46e-158 496
MsG0080048367.01.T01 MTR_2g061380 81.481 243 34 2 2 243 1149 1381 8.78e-120 390
MsG0080048367.01.T01 MTR_2g061380 61.972 71 12 2 496 554 1843 1910 6.27e-15 79.0
MsG0080048367.01.T01 MTR_7g005950 73.267 303 37 2 229 488 1444 1745 8.34e-143 454
MsG0080048367.01.T01 MTR_7g005950 69.547 243 60 4 2 243 1162 1391 1.08e-92 312
MsG0080048367.01.T01 MTR_7g005950 73.267 303 37 2 229 488 1444 1745 1.49e-142 454
MsG0080048367.01.T01 MTR_7g005950 69.959 243 59 5 2 243 1162 1391 9.97e-93 312
MsG0080048367.01.T01 MTR_1g116370 72.667 300 38 2 229 485 1428 1726 1.10e-137 441
MsG0080048367.01.T01 MTR_1g116370 67.901 243 66 4 2 243 1144 1375 9.80e-98 327
MsG0080048367.01.T01 MTR_3g075180 39.597 596 221 12 2 488 1138 1703 1.88e-116 380
MsG0080048367.01.T01 MTR_3g075180 39.597 596 221 12 2 488 1140 1705 2.83e-116 380
MsG0080048367.01.T01 MTR_8g093630 54.520 354 96 5 230 540 1433 1764 6.24e-114 374
MsG0080048367.01.T01 MTR_8g093630 57.202 243 77 4 2 243 1163 1379 7.55e-73 254
MsG0080048367.01.T01 MTR_3g047390 56.433 342 96 4 229 520 1398 1736 7.11e-114 373
MsG0080048367.01.T01 MTR_3g047390 47.581 248 90 8 2 243 1132 1345 7.16e-51 189
MsG0080048367.01.T01 MTR_3g096200 61.258 302 73 3 230 488 1423 1723 2.58e-113 372
MsG0080048367.01.T01 MTR_3g096200 54.959 242 84 3 2 243 1153 1369 4.36e-71 249
MsG0080048367.01.T01 MTR_1g116470 40.372 592 214 14 2 483 1125 1687 8.53e-111 364
MsG0080048367.01.T01 MTR_1g116470 40.372 592 214 15 2 483 1130 1692 9.66e-111 364
MsG0080048367.01.T01 MTR_2g072160 57.096 303 85 5 229 488 1442 1742 9.24e-102 338
MsG0080048367.01.T01 MTR_2g072160 48.846 260 99 6 2 260 1180 1406 6.56e-64 228
MsG0080048367.01.T01 MTR_2g013580 54.266 293 92 5 229 480 1271 1562 2.47e-92 311
MsG0080048367.01.T01 MTR_2g013580 40.602 266 107 5 2 243 980 1218 9.52e-45 171
MsG0080048367.01.T01 MTR_2g090375 51.495 301 104 4 229 488 1248 1547 2.31e-91 308
MsG0080048367.01.T01 MTR_2g090375 46.332 259 98 8 2 245 964 1196 3.16e-52 193
MsG0080048367.01.T01 MTR_4g078220 51.827 301 103 4 229 488 1258 1557 1.45e-90 306
MsG0080048367.01.T01 MTR_4g078220 42.803 264 100 7 2 243 971 1205 2.94e-47 179
MsG0080048367.01.T01 MTR_8g093630 58.051 236 72 4 2 236 1163 1372 2.55e-72 253
MsG0080048367.01.T01 MTR_1g101735 70.526 95 27 1 229 323 45 138 3.41e-41 145
MsG0080048367.01.T01 MTR_1g101740 44.853 136 52 7 357 488 70 186 5.84e-22 98.6
MsG0080048367.01.T01 MTR_2g040170 85.714 35 5 0 124 158 22 56 2.22e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048367.01.T01 AT2G31960 71.795 312 44 3 229 497 1395 1705 7.01e-142 452
MsG0080048367.01.T01 AT2G31960 65.000 260 81 3 2 260 1109 1359 3.75e-97 325
MsG0080048367.01.T01 AT2G31960 65.306 49 14 1 506 554 1827 1872 3.27e-11 67.0
MsG0080048367.01.T01 AT2G31960 71.795 312 44 3 229 497 1436 1746 1.26e-141 452
MsG0080048367.01.T01 AT2G31960 65.000 260 81 3 2 260 1150 1400 3.67e-97 325
MsG0080048367.01.T01 AT2G31960 65.306 49 14 1 506 554 1868 1913 3.25e-11 67.0
MsG0080048367.01.T01 AT2G31960 71.795 312 44 3 229 497 1436 1746 1.26e-141 452
MsG0080048367.01.T01 AT2G31960 65.000 260 81 3 2 260 1150 1400 3.67e-97 325
MsG0080048367.01.T01 AT2G31960 65.306 49 14 1 506 554 1868 1913 3.25e-11 67.0
MsG0080048367.01.T01 AT2G31960 71.795 312 44 3 229 497 1436 1746 1.26e-141 452
MsG0080048367.01.T01 AT2G31960 65.000 260 81 3 2 260 1150 1400 3.67e-97 325
MsG0080048367.01.T01 AT2G31960 65.306 49 14 1 506 554 1868 1913 3.25e-11 67.0
MsG0080048367.01.T01 AT2G31960 71.795 312 44 3 229 497 1436 1746 1.26e-141 452
MsG0080048367.01.T01 AT2G31960 65.000 260 81 3 2 260 1150 1400 3.67e-97 325
MsG0080048367.01.T01 AT2G31960 65.306 49 14 1 506 554 1868 1913 3.25e-11 67.0
MsG0080048367.01.T01 AT1G05570 71.795 312 44 3 229 497 1395 1705 1.46e-141 451
MsG0080048367.01.T01 AT1G05570 65.385 260 80 3 2 260 1109 1359 2.13e-97 326
MsG0080048367.01.T01 AT1G05570 65.306 49 14 1 506 554 1827 1872 1.94e-11 67.8
MsG0080048367.01.T01 AT1G05570 71.795 312 44 3 229 497 1436 1746 1.79e-141 451
MsG0080048367.01.T01 AT1G05570 65.385 260 80 3 2 260 1150 1400 1.60e-97 326
MsG0080048367.01.T01 AT1G05570 65.306 49 14 1 506 554 1868 1913 1.93e-11 67.8
MsG0080048367.01.T01 AT1G05570 71.795 312 44 3 229 497 1436 1746 1.79e-141 451
MsG0080048367.01.T01 AT1G05570 65.385 260 80 3 2 260 1150 1400 1.60e-97 326
MsG0080048367.01.T01 AT1G05570 65.306 49 14 1 506 554 1868 1913 1.93e-11 67.8
MsG0080048367.01.T01 AT1G05570 71.795 312 44 3 229 497 1436 1746 1.79e-141 451
MsG0080048367.01.T01 AT1G05570 65.385 260 80 3 2 260 1150 1400 1.60e-97 326
MsG0080048367.01.T01 AT1G05570 65.306 49 14 1 506 554 1868 1913 1.93e-11 67.8
MsG0080048367.01.T01 AT5G13000 71.906 299 40 2 229 484 1422 1719 1.14e-137 441
MsG0080048367.01.T01 AT5G13000 66.255 243 49 5 2 243 1159 1369 1.75e-91 309
MsG0080048367.01.T01 AT5G13000 63.265 49 15 1 506 554 1832 1877 1.59e-11 68.2
MsG0080048367.01.T01 AT5G13000 71.906 299 40 2 229 484 1442 1739 1.51e-137 441
MsG0080048367.01.T01 AT5G13000 66.667 243 68 3 2 243 1159 1389 6.52e-96 322
MsG0080048367.01.T01 AT5G13000 63.265 49 15 1 506 554 1873 1918 1.63e-11 68.2
MsG0080048367.01.T01 AT5G36870 63.636 308 67 5 229 497 1365 1666 2.84e-118 386
MsG0080048367.01.T01 AT5G36870 59.231 260 90 4 2 260 1085 1329 2.62e-82 282
MsG0080048367.01.T01 AT5G36870 63.636 308 67 5 229 497 1366 1667 2.85e-118 386
MsG0080048367.01.T01 AT5G36870 59.231 260 90 4 2 260 1086 1330 2.67e-82 282
MsG0080048367.01.T01 AT5G36870 63.636 308 67 5 229 497 1358 1659 3.51e-118 385
MsG0080048367.01.T01 AT5G36870 59.231 260 90 4 2 260 1078 1322 7.11e-82 281
MsG0080048367.01.T01 AT5G36870 63.636 308 67 5 229 497 1358 1659 3.98e-118 385
MsG0080048367.01.T01 AT5G36870 59.231 260 90 4 2 260 1078 1322 3.17e-82 282
MsG0080048367.01.T01 AT5G36870 63.636 308 67 5 229 497 1358 1659 3.98e-118 385
MsG0080048367.01.T01 AT5G36870 59.231 260 90 4 2 260 1078 1322 3.17e-82 282
MsG0080048367.01.T01 AT3G59100 61.386 303 73 3 229 488 1409 1710 2.40e-115 377
MsG0080048367.01.T01 AT3G59100 50.000 248 89 7 2 243 1138 1356 2.68e-58 211
MsG0080048367.01.T01 AT3G59100 61.386 303 73 3 229 488 1112 1413 2.58e-115 376
MsG0080048367.01.T01 AT3G59100 47.170 265 105 7 2 260 841 1076 1.34e-58 213
MsG0080048367.01.T01 AT1G06490 59.934 302 77 2 230 488 1422 1722 3.39e-115 377
MsG0080048367.01.T01 AT1G06490 50.403 248 88 6 2 243 1150 1368 7.75e-58 210
MsG0080048367.01.T01 AT2G13680 61.462 301 72 3 230 487 1412 1711 3.66e-115 377
MsG0080048367.01.T01 AT2G13680 54.733 243 83 5 2 243 1142 1358 1.02e-68 242
MsG0080048367.01.T01 AT1G06490 59.934 302 77 2 230 488 1422 1722 5.51e-115 377
MsG0080048367.01.T01 AT1G06490 50.403 248 88 6 2 243 1150 1368 7.93e-58 210
MsG0080048367.01.T01 AT4G03550 38.629 598 250 17 2 488 980 1571 4.99e-106 350
MsG0080048367.01.T01 AT3G14570 55.776 303 90 2 229 488 1443 1744 6.88e-104 345
MsG0080048367.01.T01 AT3G14570 51.923 260 91 6 2 260 1181 1407 6.37e-68 240
MsG0080048367.01.T01 AT3G14570 55.776 303 90 2 229 488 1453 1754 7.92e-104 345
MsG0080048367.01.T01 AT3G14570 51.923 260 91 6 2 260 1191 1417 8.88e-68 239
MsG0080048367.01.T01 AT3G14570 55.776 303 90 2 229 488 1469 1770 9.23e-104 344
MsG0080048367.01.T01 AT3G14570 51.923 260 91 6 2 260 1207 1433 7.66e-68 239
MsG0080048367.01.T01 AT3G07160 54.362 298 92 2 229 483 1386 1682 6.46e-102 339
MsG0080048367.01.T01 AT3G07160 44.856 243 95 6 2 243 1129 1333 1.86e-47 179
MsG0080048367.01.T01 AT3G07160 54.362 298 92 2 229 483 1386 1682 6.46e-102 339
MsG0080048367.01.T01 AT3G07160 44.856 243 95 6 2 243 1129 1333 1.86e-47 179
MsG0080048367.01.T01 AT3G07160 54.362 298 92 2 229 483 1384 1680 6.64e-102 339
MsG0080048367.01.T01 AT3G07160 44.856 243 95 6 2 243 1127 1331 1.95e-47 179
MsG0080048367.01.T01 AT2G36850 54.125 303 95 4 229 488 1398 1699 1.82e-101 338
MsG0080048367.01.T01 AT2G36850 44.033 243 105 5 2 243 1133 1345 2.11e-46 176
MsG0080048367.01.T01 AT4G04970 53.488 301 98 4 229 488 1264 1563 3.97e-96 322
MsG0080048367.01.T01 AT4G04970 40.426 282 118 6 2 260 974 1228 4.31e-48 181

Find 150 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTGATAATTAT+AGG 0.181975 contig288end:-6736 MsG0080048367.01.T01:CDS
AATAACCTTGTCTATCTTTC+GGG 0.211784 contig288end:+9547 MsG0080048367.01.T01:intergenic
GCTTCCTGGGCCTGCAATAT+TGG 0.213921 contig288end:-8463 MsG0080048367.01.T01:CDS
CAGAAGAAGAACTCCGTTTA+TGG 0.232242 contig288end:-10211 MsG0080048367.01.T01:exon
CTTGTGGTCTACCATATATT+TGG 0.251210 contig288end:-6665 MsG0080048367.01.T01:CDS
CATGAGCTTTAAAATTTCTT+TGG 0.252594 contig288end:+9719 MsG0080048367.01.T01:intergenic
TTGCTTCAAACATTGATATC+TGG 0.283946 contig288end:+7312 MsG0080048367.01.T01:intergenic
TAATAACCTTGTCTATCTTT+CGG 0.283959 contig288end:+9546 MsG0080048367.01.T01:intergenic
GAAGCAATTTGTACCAGTTT+TGG 0.296267 contig288end:+10164 MsG0080048367.01.T01:intergenic
ACAAGCGATCTGGTGATTCT+AGG 0.300867 contig288end:-9743 MsG0080048367.01.T01:CDS
GAGTCCTATAGTTGGATATC+TGG 0.301787 contig288end:+8208 MsG0080048367.01.T01:intergenic
ACAGTTTATGTATTCCTTTA+CGG 0.316647 contig288end:-7077 MsG0080048367.01.T01:CDS
GGAACGAAAACACACTATTA+TGG 0.323580 contig288end:-6824 MsG0080048367.01.T01:CDS
ACGTGGATATGAAGTAATAA+TGG 0.328113 contig288end:-5030 MsG0080048367.01.T01:CDS
CGCCTCTATCTTTCCCTTAG+TGG 0.334678 contig288end:-7053 MsG0080048367.01.T01:CDS
TTCCCCTCACCCAATATTGC+AGG 0.338842 contig288end:+8453 MsG0080048367.01.T01:intergenic
TCTGTTTATTTCACCACTAT+TGG 0.340203 contig288end:-7206 MsG0080048367.01.T01:CDS
CATTGCTAAAACTGGACTTT+GGG 0.340225 contig288end:-5072 MsG0080048367.01.T01:CDS
TAAACGTGACATGCATGATT+TGG 0.352608 contig288end:-4702 MsG0080048367.01.T01:CDS
TTTGAAGCAAAGATAGCTAA+TGG 0.362288 contig288end:-7299 MsG0080048367.01.T01:CDS
CTTCCTGGGCCTGCAATATT+GGG 0.366867 contig288end:-8462 MsG0080048367.01.T01:CDS
CAAATGGTGGGACCCCTTCC+CGG 0.367038 contig288end:-8612 MsG0080048367.01.T01:CDS
GGCCAAACATTGACCAAAAC+TGG 0.368756 contig288end:-10177 MsG0080048367.01.T01:intron
CATGAGCATCTCGGGCATTC+CGG 0.368784 contig288end:-6426 MsG0080048367.01.T01:CDS
TCATTGCTAAAACTGGACTT+TGG 0.372069 contig288end:-5073 MsG0080048367.01.T01:CDS
TTACACAAGAGGCTGTTTCC+AGG 0.378319 contig288end:+8664 MsG0080048367.01.T01:intergenic
ATTTACAGAATAAAGCTTCC+TGG 0.378673 contig288end:-8477 MsG0080048367.01.T01:intron
CGGGAAGGGGTCCCACCATT+TGG 0.381455 contig288end:+8613 MsG0080048367.01.T01:intergenic
GGTATGCATGGCCAAATATA+TGG 0.387935 contig288end:+6654 MsG0080048367.01.T01:intergenic
AAGCCACTCATTGCTAAAAC+TGG 0.396289 contig288end:-5080 MsG0080048367.01.T01:CDS
AGTCCTATAGTTGGATATCT+GGG 0.412327 contig288end:+8209 MsG0080048367.01.T01:intergenic
GCAAACAATTGATATGAATC+AGG 0.417574 contig288end:-8382 MsG0080048367.01.T01:intron
CCTATAATTATCAGCAAACT+TGG 0.418224 contig288end:+6736 MsG0080048367.01.T01:intergenic
TATGGAAGGACATTGCTTCA+TGG 0.424716 contig288end:-6806 MsG0080048367.01.T01:CDS
CGTGGATATGAAGTAATAAT+GGG 0.424908 contig288end:-5029 MsG0080048367.01.T01:CDS
CCTGTAGTTCCAATGCTTGT+CGG 0.425432 contig288end:+10011 MsG0080048367.01.T01:intergenic
TGCCATGAACCATATGGTTA+TGG 0.426797 contig288end:+6604 MsG0080048367.01.T01:intergenic
GGCGGCAGAACTAGAGAGTA+AGG 0.428629 contig288end:-9862 MsG0080048367.01.T01:CDS
TACCATAACCATATGGTTCA+TGG 0.438606 contig288end:-6606 MsG0080048367.01.T01:CDS
GCATACGCAGGGTCCGGGAA+GGG 0.438816 contig288end:+8599 MsG0080048367.01.T01:intergenic
TCCCTTAGTGGACTTGAAGA+AGG 0.440846 contig288end:-7041 MsG0080048367.01.T01:CDS
CATACGCAGGGTCCGGGAAG+GGG 0.441791 contig288end:+8600 MsG0080048367.01.T01:intergenic
GGCAGAAGATACTTGATGAT+TGG 0.443268 contig288end:-6532 MsG0080048367.01.T01:CDS
GCTCCCGCATACGCAGGGTC+CGG 0.448622 contig288end:+8593 MsG0080048367.01.T01:intergenic
TGAACTGGTGATTCTTCTTG+TGG 0.449686 contig288end:-6681 MsG0080048367.01.T01:CDS
TTCCCGGACCCTGCGTATGC+GGG 0.454460 contig288end:-8596 MsG0080048367.01.T01:CDS
CTTGATATGGCGAAGGATGA+AGG 0.455339 contig288end:-9983 MsG0080048367.01.T01:intron
TACTTGATGATTGGACAGAT+TGG 0.455559 contig288end:-6523 MsG0080048367.01.T01:CDS
CCGACAAGCATTGGAACTAC+AGG 0.458448 contig288end:-10011 MsG0080048367.01.T01:CDS
GATGTATTTCCGACAAGCAT+TGG 0.461398 contig288end:-10020 MsG0080048367.01.T01:CDS
AAGGTCACGGGTTCAAGTCC+TGG 0.462983 contig288end:-8682 MsG0080048367.01.T01:CDS
AGTAGCAATACCACGCATTC+CGG 0.467028 contig288end:+6407 MsG0080048367.01.T01:intergenic
TGAAATAAACAGATAACATT+CGG 0.467513 contig288end:+7216 MsG0080048367.01.T01:intergenic
GCCCTTCTTCAAGTCCACTA+AGG 0.470780 contig288end:+7039 MsG0080048367.01.T01:intergenic
CTCCCGCATACGCAGGGTCC+GGG 0.477983 contig288end:+8594 MsG0080048367.01.T01:intergenic
ATGCGGGAGCTTCAGTGCAC+CGG 0.482772 contig288end:-8580 MsG0080048367.01.T01:CDS
CCTCTGTATGATGCCATAAA+CGG 0.484059 contig288end:+10198 MsG0080048367.01.T01:intergenic
TGTGTAACAGGATAACTATA+TGG 0.484176 contig288end:-8288 MsG0080048367.01.T01:intron
CTTCCCGGACCCTGCGTATG+CGG 0.488315 contig288end:-8597 MsG0080048367.01.T01:CDS
TGGGCCTGCAATATTGGGTG+AGG 0.491429 contig288end:-8457 MsG0080048367.01.T01:CDS
TTTACAGAATAAAGCTTCCT+GGG 0.492296 contig288end:-8476 MsG0080048367.01.T01:intron
CAAGCGATCTGGTGATTCTA+GGG 0.494153 contig288end:-9742 MsG0080048367.01.T01:CDS
ATTGGACAGATTGGCATAAG+TGG 0.495050 contig288end:-6514 MsG0080048367.01.T01:CDS
TTAGAAGAGTTTGATTTCAA+AGG 0.496360 contig288end:-4758 MsG0080048367.01.T01:CDS
TATAGTATTCACAAGCGATC+TGG 0.496939 contig288end:-9753 MsG0080048367.01.T01:CDS
TGCTCTCTGAGTCCTATAGT+TGG 0.497177 contig288end:+8200 MsG0080048367.01.T01:intergenic
CGCATACGCAGGGTCCGGGA+AGG 0.499824 contig288end:+8598 MsG0080048367.01.T01:intergenic
AAAGATAGAGGCGGCCGTAA+AGG 0.501348 contig288end:+7063 MsG0080048367.01.T01:intergenic
GGCCCCAGATATCCAACTAT+AGG 0.504340 contig288end:-8212 MsG0080048367.01.T01:CDS
TTGAAGCAAAGATAGCTAAT+GGG 0.505706 contig288end:-7298 MsG0080048367.01.T01:CDS
CAAATCCCGATGGATTGAAA+AGG 0.507604 contig288end:+6558 MsG0080048367.01.T01:intergenic
CGCAGTACAGAGGTACTGGT+CGG 0.508035 contig288end:-6778 MsG0080048367.01.T01:CDS
CCCTTAGTGGACTTGAAGAA+GGG 0.509594 contig288end:-7040 MsG0080048367.01.T01:CDS
GCAGTACAGAGGTACTGGTC+GGG 0.511605 contig288end:-6777 MsG0080048367.01.T01:CDS
ATAATTATAGGCTCTATTCT+CGG 0.513219 contig288end:-6724 MsG0080048367.01.T01:CDS
TAAAACTGGACTTTGGGGCT+CGG 0.513590 contig288end:-5066 MsG0080048367.01.T01:CDS
GGTGCGCAGTACAGAGGTAC+TGG 0.513738 contig288end:-6782 MsG0080048367.01.T01:CDS
TGGAAGAAGCTTTCAAAATG+AGG 0.514122 contig288end:-8268 MsG0080048367.01.T01:CDS
TTCAATTCTACTTTACGTGA+AGG 0.514842 contig288end:-7392 MsG0080048367.01.T01:CDS
CCGAGTTGCTTATATTGATG+AGG 0.515782 contig288end:-9594 MsG0080048367.01.T01:CDS
ATGCATGATTTGGATGATAG+TGG 0.516063 contig288end:-4692 MsG0080048367.01.T01:CDS
GCTGCGTACAATACACCAAA+TGG 0.516147 contig288end:-8628 MsG0080048367.01.T01:CDS
TGTCCCTGCCATGAACCATA+TGG 0.518911 contig288end:+6598 MsG0080048367.01.T01:intergenic
TTTCGGGAAGAATCTTTGCT+AGG 0.521814 contig288end:+9563 MsG0080048367.01.T01:intergenic
TGGCTTCTATTTCAGTACCC+TGG 0.525125 contig288end:-7186 MsG0080048367.01.T01:intron
AGGTACTGGTCGGGGTTTCG+TGG 0.527233 contig288end:-6768 MsG0080048367.01.T01:CDS
TCACCCAATATTGCAGGCCC+AGG 0.527654 contig288end:+8459 MsG0080048367.01.T01:intergenic
GTCCACTAAGGGAAAGATAG+AGG 0.529173 contig288end:+7051 MsG0080048367.01.T01:intergenic
CAATGAGTAGGGACATATAC+AGG 0.530934 contig288end:-7262 MsG0080048367.01.T01:CDS
ATAAGCAACCGCGGAGGTAT+CGG 0.531023 contig288end:-6491 MsG0080048367.01.T01:CDS
CACAACGACCGCTCACTGGT+TGG 0.533260 contig288end:+9834 MsG0080048367.01.T01:intergenic
TGTCCACAACGACCGCTCAC+TGG 0.536879 contig288end:+9830 MsG0080048367.01.T01:intergenic
CCCTTCTTCAAGTCCACTAA+GGG 0.543227 contig288end:+7040 MsG0080048367.01.T01:intergenic
GCAAAGATAGCTAATGGGAA+TGG 0.543346 contig288end:-7293 MsG0080048367.01.T01:CDS
ATATAAGCAACTCGGAGAGA+TGG 0.543487 contig288end:+9602 MsG0080048367.01.T01:intergenic
TTCGCCTCTTGTGAAAATGA+TGG 0.546016 contig288end:+8410 MsG0080048367.01.T01:intergenic
AATTATCAGCAAACTTGGCA+TGG 0.548441 contig288end:+6741 MsG0080048367.01.T01:intergenic
ACTGAAGCTCCCGCATACGC+AGG 0.549156 contig288end:+8587 MsG0080048367.01.T01:intergenic
CCCGATGGATTGAAAAGGAA+AGG 0.552416 contig288end:+6563 MsG0080048367.01.T01:intergenic
ACATACAAGTTGGTAAAGGA+AGG 0.554801 contig288end:-7349 MsG0080048367.01.T01:CDS
TGCGGGAGCTTCAGTGCACC+GGG 0.556922 contig288end:-8579 MsG0080048367.01.T01:intron
CAGTACAGAGGTACTGGTCG+GGG 0.557670 contig288end:-6776 MsG0080048367.01.T01:CDS
TCATAAACAGAATTAATGAA+AGG 0.560827 contig288end:-9891 MsG0080048367.01.T01:intron
CAACCACTCCTCGGTATGCA+TGG 0.567423 contig288end:+6642 MsG0080048367.01.T01:intergenic
CTCGGGCATTCCGGAATGCG+TGG 0.569739 contig288end:-6417 MsG0080048367.01.T01:intron
GGGCCTGCAATATTGGGTGA+GGG 0.569866 contig288end:-8456 MsG0080048367.01.T01:CDS
CATCATGAGTACATACAAGT+TGG 0.570746 contig288end:-7359 MsG0080048367.01.T01:CDS
GAGTACATACAAGTTGGTAA+AGG 0.573963 contig288end:-7353 MsG0080048367.01.T01:CDS
ACATTCGGAAGAAATCAAAT+CGG 0.579187 contig288end:+7231 MsG0080048367.01.T01:intergenic
ACTGAAATAGAAGCCAATAG+TGG 0.579608 contig288end:+7193 MsG0080048367.01.T01:intergenic
AAATATATGCAACCACTCCT+CGG 0.579682 contig288end:+6633 MsG0080048367.01.T01:intergenic
CGAAAACACACTATTATGGA+AGG 0.584035 contig288end:-6820 MsG0080048367.01.T01:CDS
AGTAGGGACATATACAGGCT+TGG 0.584997 contig288end:-7257 MsG0080048367.01.T01:CDS
TTCTGCCACTCAAATCCCGA+TGG 0.586037 contig288end:+6548 MsG0080048367.01.T01:intergenic
TCATGTGACTGTAAGGTCAC+GGG 0.586314 contig288end:-8694 MsG0080048367.01.T01:intron
TATGGTTCATGGCAGGGACA+TGG 0.586459 contig288end:-6595 MsG0080048367.01.T01:CDS
AGAATTAATGAAAGGTTACA+AGG 0.589696 contig288end:-9883 MsG0080048367.01.T01:CDS
CCTCATCAATATAAGCAACT+CGG 0.598986 contig288end:+9594 MsG0080048367.01.T01:intergenic
CAACCAGTGAGCGGTCGTTG+TGG 0.600536 contig288end:-9833 MsG0080048367.01.T01:CDS
ATGGTGAGCAGACAATGAGT+AGG 0.601094 contig288end:-7274 MsG0080048367.01.T01:CDS
GCGTACAATACACCAAATGG+TGG 0.601920 contig288end:-8625 MsG0080048367.01.T01:CDS
ATAACCATATGGTTCATGGC+AGG 0.602239 contig288end:-6602 MsG0080048367.01.T01:CDS
GGCCTGCAATATTGGGTGAG+GGG 0.603863 contig288end:-8455 MsG0080048367.01.T01:CDS
CTGAAGCTCCCGCATACGCA+GGG 0.603943 contig288end:+8588 MsG0080048367.01.T01:intergenic
TCAATCCATCGGGATTTGAG+TGG 0.606161 contig288end:-6553 MsG0080048367.01.T01:CDS
TGGTGAGCAGACAATGAGTA+GGG 0.609234 contig288end:-7273 MsG0080048367.01.T01:CDS
TACATATGTGAACTTCATGT+CGG 0.611939 contig288end:+9791 MsG0080048367.01.T01:intergenic
TAACCATATGGTTCATGGCA+GGG 0.612851 contig288end:-6601 MsG0080048367.01.T01:CDS
CAAGAATTTCTTAAGAAACA+CGG 0.614870 contig288end:-8236 MsG0080048367.01.T01:CDS
TGGCCATGCATACCGAGGAG+TGG 0.621502 contig288end:-6645 MsG0080048367.01.T01:CDS
ATTGCTAAAACTGGACTTTG+GGG 0.627624 contig288end:-5071 MsG0080048367.01.T01:CDS
CATGGAGGTGCGCAGTACAG+AGG 0.635346 contig288end:-6788 MsG0080048367.01.T01:CDS
AGGAAAATCCAACCAGTGAG+CGG 0.637877 contig288end:-9842 MsG0080048367.01.T01:CDS
CATACAAGTTGGTAAAGGAA+GGG 0.654331 contig288end:-7348 MsG0080048367.01.T01:CDS
GTCCTATAGTTGGATATCTG+GGG 0.655811 contig288end:+8210 MsG0080048367.01.T01:intergenic
CCGTTTATGGCATCATACAG+AGG 0.667906 contig288end:-10198 MsG0080048367.01.T01:exon
CGTACAATACACCAAATGGT+GGG 0.668975 contig288end:-8624 MsG0080048367.01.T01:CDS
TCGGTTCGAGCACTTGCACG+TGG 0.678556 contig288end:-5047 MsG0080048367.01.T01:CDS
GGGTTTGCTACTCTTCACAC+CGG 0.681518 contig288end:-5009 MsG0080048367.01.T01:intron
GTTGGTAAAGGAAGGGACGT+CGG 0.685650 contig288end:-7341 MsG0080048367.01.T01:CDS
CACTAAGGGAAAGATAGAGG+CGG 0.691569 contig288end:+7054 MsG0080048367.01.T01:intergenic
GGAAGGACATTGCTTCATGG+AGG 0.695609 contig288end:-6803 MsG0080048367.01.T01:CDS
ATATTTGGCCATGCATACCG+AGG 0.701928 contig288end:-6650 MsG0080048367.01.T01:CDS
TTCTTCCCGAAAGATAGACA+AGG 0.707475 contig288end:-9552 MsG0080048367.01.T01:intron
CATAAGTGGATAAGCAACCG+CGG 0.717808 contig288end:-6500 MsG0080048367.01.T01:CDS
AAAGGAATACATAAACTGTG+AGG 0.718829 contig288end:+7081 MsG0080048367.01.T01:intergenic
AAGTGGATAAGCAACCGCGG+AGG 0.748031 contig288end:-6497 MsG0080048367.01.T01:CDS
GAATTTCTTAAGAAACACGG+TGG 0.758184 contig288end:-8233 MsG0080048367.01.T01:CDS
GAGGTACACCGATACCTCCG+CGG 0.765931 contig288end:+6483 MsG0080048367.01.T01:intergenic
ATTAATGAAAGGTTACAAGG+CGG 0.773886 contig288end:-9880 MsG0080048367.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTAAGTTGTATAATA+AGG + contig288end:4983-5002 MsG0080048367.01.T01:intergenic 10.0%
!!! AGTTTTGTAATTAATTATTA+TGG - contig288end:6073-6092 MsG0080048367.01.T01:intron 10.0%
!!! TGATATTTTAATAAAAGAAA+TGG + contig288end:7457-7476 MsG0080048367.01.T01:intergenic 10.0%
!! AAAATAACCAAATGAAAAAT+TGG + contig288end:6392-6411 MsG0080048367.01.T01:intergenic 15.0%
!! ATAATCAATAACAAATAACA+AGG + contig288end:5229-5248 MsG0080048367.01.T01:intergenic 15.0%
!! ATAATTAATTACAAAACTAG+AGG + contig288end:6071-6090 MsG0080048367.01.T01:intergenic 15.0%
!! ATATTTCATCTTCATTATAA+AGG + contig288end:6350-6369 MsG0080048367.01.T01:intergenic 15.0%
!! CATATTGATATATGAAAAAT+CGG + contig288end:8535-8554 MsG0080048367.01.T01:intergenic 15.0%
!! TAAAAAATAGAATTTGATCA+AGG + contig288end:10179-10198 MsG0080048367.01.T01:intergenic 15.0%
!! TATTTCATCTTCATTATAAA+GGG + contig288end:6349-6368 MsG0080048367.01.T01:intergenic 15.0%
!!! AATTTTTCATTTGGTTATTT+TGG - contig288end:6391-6410 MsG0080048367.01.T01:intron 15.0%
!! AAAATGATCAAACATATTCT+TGG - contig288end:6096-6115 MsG0080048367.01.T01:intron 20.0%
!! AAATTACATATCTAACATGT+AGG + contig288end:4780-4799 MsG0080048367.01.T01:intergenic 20.0%
!! CATGATATTAAGATACTTTA+GGG + contig288end:5771-5790 MsG0080048367.01.T01:intergenic 20.0%
!! GAAGATGAAATATTCAAATT+AGG - contig288end:6357-6376 MsG0080048367.01.T01:intron 20.0%
!! GGTATCACATTATTTATATA+TGG - contig288end:6538-6557 MsG0080048367.01.T01:CDS 20.0%
!! GTTATTTATCAAACCAAATA+TGG - contig288end:7066-7085 MsG0080048367.01.T01:CDS 20.0%
!! TAATGAAGATGAAATATTGA+GGG - contig288end:6152-6171 MsG0080048367.01.T01:intron 20.0%
!! TACTTTAGTTACTAAATTGA+TGG + contig288end:5741-5760 MsG0080048367.01.T01:intergenic 20.0%
!! TATTCTGCATTGTATATTTA+CGG - contig288end:4807-4826 MsG0080048367.01.T01:intron 20.0%
!! TCATAAACAGAATTAATGAA+AGG - contig288end:5008-5027 MsG0080048367.01.T01:intron 20.0%
!! TGAAATAAACAGATAACATT+CGG + contig288end:7686-7705 MsG0080048367.01.T01:intergenic 20.0%
!!! AAACTTTAAGGATTAATTGA+TGG + contig288end:5681-5700 MsG0080048367.01.T01:intergenic 20.0%
!!! ATGATTTCCAATTTTTCATT+TGG - contig288end:6382-6401 MsG0080048367.01.T01:intron 20.0%
!!! ATTATATTTTTCCTCTTAAC+AGG + contig288end:6034-6053 MsG0080048367.01.T01:intergenic 20.0%
!!! ATTTAAAACGTAGGTTTTAA+TGG + contig288end:5907-5926 MsG0080048367.01.T01:intergenic 20.0%
!!! CGATTTTTCATATATCAATA+TGG - contig288end:8533-8552 MsG0080048367.01.T01:intron 20.0%
!!! TCTCTATTTTCTTTAACAAT+TGG - contig288end:6917-6936 MsG0080048367.01.T01:intron 20.0%
!!! TTGGTTTATAATCATTCTTT+TGG + contig288end:10036-10055 MsG0080048367.01.T01:intergenic 20.0%
!!! TTTTAATTACCATAACCATA+TGG - contig288end:8286-8305 MsG0080048367.01.T01:intron 20.0%
! AAAAAAAGTTTAGGTGAGTT+GGG + contig288end:9597-9616 MsG0080048367.01.T01:intergenic 25.0%
! AAAAGTCTATCAAATACATC+GGG + contig288end:7323-7342 MsG0080048367.01.T01:intergenic 25.0%
! AAAATAGAGACTTACTTCAA+GGG + contig288end:6907-6926 MsG0080048367.01.T01:intergenic 25.0%
! AATCAGACTATTGTAATACA+AGG + contig288end:9216-9235 MsG0080048367.01.T01:intergenic 25.0%
! AATGAAGATGAAATATTGAG+GGG - contig288end:6153-6172 MsG0080048367.01.T01:intron 25.0%
! ACAGTTTATGTATTCCTTTA+CGG - contig288end:7822-7841 MsG0080048367.01.T01:intron 25.0%
! AGAATTAATGAAAGGTTACA+AGG - contig288end:5016-5035 MsG0080048367.01.T01:CDS 25.0%
! ATAAAATGATGTGTAACAGA+TGG + contig288end:8801-8820 MsG0080048367.01.T01:intergenic 25.0%
! ATAATTATAGGCTCTATTCT+CGG - contig288end:8175-8194 MsG0080048367.01.T01:intron 25.0%
! ATTCTGCATTGTATATTTAC+GGG - contig288end:4808-4827 MsG0080048367.01.T01:intron 25.0%
! ATTGAAAAATCATGTACAAC+AGG + contig288end:10069-10088 MsG0080048367.01.T01:intergenic 25.0%
! ATTTCATCAACATAATCATC+TGG - contig288end:5983-6002 MsG0080048367.01.T01:intron 25.0%
! CAAGAATTTCTTAAGAAACA+CGG - contig288end:6663-6682 MsG0080048367.01.T01:CDS 25.0%
! CATCCTCATAATATTAATAG+CGG - contig288end:8972-8991 MsG0080048367.01.T01:intron 25.0%
! CCATGATATTAAGATACTTT+AGG + contig288end:5772-5791 MsG0080048367.01.T01:intergenic 25.0%
! CGTATTCATTCTAATAATCT+AGG - contig288end:6980-6999 MsG0080048367.01.T01:intron 25.0%
! CTTGTATTTAGATTGATTGA+GGG - contig288end:8927-8946 MsG0080048367.01.T01:intron 25.0%
! GAAAAGTCTATCAAATACAT+CGG + contig288end:7324-7343 MsG0080048367.01.T01:intergenic 25.0%
! GGGATATAATCTTTCTAATT+GGG - contig288end:8725-8744 MsG0080048367.01.T01:intron 25.0%
! GTAATGAAGATGAAATATTG+AGG - contig288end:6151-6170 MsG0080048367.01.T01:intron 25.0%
! TAAAAGATCCAAATTGATGT+AGG - contig288end:5940-5959 MsG0080048367.01.T01:intron 25.0%
! TAATAACCTTGTCTATCTTT+CGG + contig288end:5356-5375 MsG0080048367.01.T01:intergenic 25.0%
! TGGGATATAATCTTTCTAAT+TGG - contig288end:8724-8743 MsG0080048367.01.T01:intron 25.0%
! TTACAAATTTCTCGTATTCT+TGG - contig288end:9990-10009 MsG0080048367.01.T01:CDS 25.0%
! TTCAGATGAATCAATTGATT+TGG + contig288end:5408-5427 MsG0080048367.01.T01:intergenic 25.0%
! TTCTTTGGCAAAAAAAGTTT+AGG + contig288end:9606-9625 MsG0080048367.01.T01:intergenic 25.0%
! TTTCTAATTGGGTTTAATGA+AGG - contig288end:8736-8755 MsG0080048367.01.T01:intron 25.0%
!! AATATCATGGACTAAATTGA+TGG - contig288end:5782-5801 MsG0080048367.01.T01:intron 25.0%
!! ATATACTTTAGGGACTAAAT+AGG - contig288end:5840-5859 MsG0080048367.01.T01:intron 25.0%
!! ATATACTTTAGGGACTAAAT+GGG + contig288end:5859-5840 MsG0080048367.01.T01:intergenic 25.0%
!! ATTTTATACTTGAGTTCGTA+TGG - contig288end:8814-8833 MsG0080048367.01.T01:intron 25.0%
!! CCTAAAGTATCTTAATATCA+TGG - contig288end:5769-5788 MsG0080048367.01.T01:intron 25.0%
!! GACTAAATTGATGGTTTATT+CGG + contig288end:5541-5560 MsG0080048367.01.T01:intergenic 25.0%
!! GGATTAATTGATGGTTTATT+TGG + contig288end:5672-5691 MsG0080048367.01.T01:intergenic 25.0%
!! GTACTAAAGATTTAAAACGT+AGG + contig288end:5916-5935 MsG0080048367.01.T01:intergenic 25.0%
!! TTAGAAGAGTTTGATTTCAA+AGG - contig288end:10141-10160 MsG0080048367.01.T01:intron 25.0%
!! TTTTGTTAAAGGAATTGAAC+TGG - contig288end:8203-8222 MsG0080048367.01.T01:CDS 25.0%
!!! ATCGTAATTTTTTCATAAGC+CGG + contig288end:6580-6599 MsG0080048367.01.T01:intergenic 25.0%
!!! CATGAGCTTTAAAATTTCTT+TGG + contig288end:5183-5202 MsG0080048367.01.T01:intergenic 25.0%
!!! GATGGATTTTATATACTTCA+TGG - contig288end:5800-5819 MsG0080048367.01.T01:intron 25.0%
!!! TTTGAAACTCTGAAACAAAT+GGG + contig288end:9935-9954 MsG0080048367.01.T01:intergenic 25.0%
AAACACTATCCTGTTACATT+TGG - contig288end:5251-5270 MsG0080048367.01.T01:intron 30.0%
AAAGGAATACATAAACTGTG+AGG + contig288end:7821-7840 MsG0080048367.01.T01:intergenic 30.0%
AAAGTCTATCAAATACATCG+GGG + contig288end:7322-7341 MsG0080048367.01.T01:intergenic 30.0%
AAATAGAGACTTACTTCAAG+GGG + contig288end:6906-6925 MsG0080048367.01.T01:intergenic 30.0%
AAATATTCATTGAAGGAGAG+TGG - contig288end:4948-4967 MsG0080048367.01.T01:intron 30.0%
AAATTTCTCGTATTCTTGGT+GGG - contig288end:9994-10013 MsG0080048367.01.T01:CDS 30.0%
AATAACCTTGTCTATCTTTC+GGG + contig288end:5355-5374 MsG0080048367.01.T01:intergenic 30.0%
AATATTCATTGAAGGAGAGT+GGG - contig288end:4949-4968 MsG0080048367.01.T01:intron 30.0%
AATCATAGATACCACTAGTA+AGG + contig288end:7754-7773 MsG0080048367.01.T01:intergenic 30.0%
ACAGGTTTATGGTATTTCAT+GGG - contig288end:8705-8724 MsG0080048367.01.T01:intron 30.0%
ACATGTAGGAATATTGTCAA+AGG + contig288end:4766-4785 MsG0080048367.01.T01:intergenic 30.0%
ACATTAGTACCAAATGTAAC+AGG + contig288end:5263-5282 MsG0080048367.01.T01:intergenic 30.0%
ACATTCGGAAGAAATCAAAT+CGG + contig288end:7671-7690 MsG0080048367.01.T01:intergenic 30.0%
ACGTGGATATGAAGTAATAA+TGG - contig288end:9869-9888 MsG0080048367.01.T01:CDS 30.0%
ACTATTGGATTACAGGTTTA+TGG - contig288end:8694-8713 MsG0080048367.01.T01:intron 30.0%
AGACTATTGTAATACAAGGT+AGG + contig288end:9212-9231 MsG0080048367.01.T01:intergenic 30.0%
AGCAGTTCAAAATTTAGATC+AGG - contig288end:5427-5446 MsG0080048367.01.T01:intron 30.0%
ATTAATGAAAGGTTACAAGG+CGG - contig288end:5019-5038 MsG0080048367.01.T01:CDS 30.0%
ATTAGAATGAATACGAGTGT+TGG + contig288end:6975-6994 MsG0080048367.01.T01:intergenic 30.0%
ATTTACAGAATAAAGCTTCC+TGG - contig288end:6422-6441 MsG0080048367.01.T01:CDS 30.0%
CAAAAAAAGTTTAGGTGAGT+TGG + contig288end:9598-9617 MsG0080048367.01.T01:intergenic 30.0%
CAAGAGAAAATGTGAAAAAC+AGG + contig288end:8056-8075 MsG0080048367.01.T01:intergenic 30.0%
CAATCAATCTAAATACAAGC+TGG + contig288end:8926-8945 MsG0080048367.01.T01:intergenic 30.0%
CATGTAGGAATATTGTCAAA+GGG + contig288end:4765-4784 MsG0080048367.01.T01:intergenic 30.0%
CCTATAATTATCAGCAAACT+TGG + contig288end:8166-8185 MsG0080048367.01.T01:intergenic 30.0%
CGCTATTAATATTATGAGGA+TGG + contig288end:8974-8993 MsG0080048367.01.T01:intergenic 30.0%
CGTGGATATGAAGTAATAAT+GGG - contig288end:9870-9889 MsG0080048367.01.T01:CDS 30.0%
CTAAAAAAGAAGATGACCAT+GGG + contig288end:7102-7121 MsG0080048367.01.T01:intergenic 30.0%
GAAAATAGAGACTTACTTCA+AGG + contig288end:6908-6927 MsG0080048367.01.T01:intergenic 30.0%
GCAAACAATTGATATGAATC+AGG - contig288end:6517-6536 MsG0080048367.01.T01:CDS 30.0%
GCTTGTATTTAGATTGATTG+AGG - contig288end:8926-8945 MsG0080048367.01.T01:intron 30.0%
TACAGGTTTATGGTATTTCA+TGG - contig288end:8704-8723 MsG0080048367.01.T01:intron 30.0%
TACAGTTACTATTGGATTAC+AGG - contig288end:8687-8706 MsG0080048367.01.T01:intron 30.0%
TACATATGTGAACTTCATGT+CGG + contig288end:5111-5130 MsG0080048367.01.T01:intergenic 30.0%
TACTGTAGAGACTAAATTGA+TGG - contig288end:5876-5895 MsG0080048367.01.T01:intron 30.0%
TATTGCTACTGAGATAATAC+TGG - contig288end:8505-8524 MsG0080048367.01.T01:intron 30.0%
TCGTTAATCAATTTCAGGAA+TGG + contig288end:5467-5486 MsG0080048367.01.T01:intergenic 30.0%
TCTGTTTATTTCACCACTAT+TGG - contig288end:7693-7712 MsG0080048367.01.T01:intron 30.0%
TGACTTCGTTAATCAATTTC+AGG + contig288end:5472-5491 MsG0080048367.01.T01:intergenic 30.0%
TGCAGCAGATAATATAGAAA+TGG + contig288end:8856-8875 MsG0080048367.01.T01:intergenic 30.0%
TGTAACAGATGGAAGAAAAA+AGG + contig288end:8790-8809 MsG0080048367.01.T01:intergenic 30.0%
TGTACTAATGCAAATACAGT+TGG - contig288end:8028-8047 MsG0080048367.01.T01:intron 30.0%
TGTGTAACAGGATAACTATA+TGG - contig288end:6611-6630 MsG0080048367.01.T01:CDS 30.0%
TTCAATTCTACTTTACGTGA+AGG - contig288end:7507-7526 MsG0080048367.01.T01:intron 30.0%
TTGAAGCAAAGATAGCTAAT+GGG - contig288end:7601-7620 MsG0080048367.01.T01:intron 30.0%
TTGCTTCAAACATTGATATC+TGG + contig288end:7590-7609 MsG0080048367.01.T01:intergenic 30.0%
TTTACAGAATAAAGCTTCCT+GGG - contig288end:6423-6442 MsG0080048367.01.T01:CDS 30.0%
! AATTTAGCCCCTGATATTTT+AGG + contig288end:5638-5657 MsG0080048367.01.T01:intergenic 30.0%
! ATTTAGCCCCTGATATTTTA+GGG + contig288end:5637-5656 MsG0080048367.01.T01:intergenic 30.0%
! ATTTGAGACCCTAAAATATC+AGG - contig288end:5626-5645 MsG0080048367.01.T01:intron 30.0%
! CATATACTTTAGGGACTAAA+TGG + contig288end:5714-5733 MsG0080048367.01.T01:intergenic 30.0%
! GGATTTTATATACTTCATGG+AGG - contig288end:5803-5822 MsG0080048367.01.T01:intron 30.0%
! TACTTTAGGGACTAAATTGA+TGG + contig288end:5550-5569 MsG0080048367.01.T01:intergenic 30.0%
! TATACTTTAGGGACTAAATG+GGG + contig288end:5712-5731 MsG0080048367.01.T01:intergenic 30.0%
! TTTGAAGCAAAGATAGCTAA+TGG - contig288end:7600-7619 MsG0080048367.01.T01:intron 30.0%
! TTTGAGACCCTAAAATATCA+GGG - contig288end:5627-5646 MsG0080048367.01.T01:intron 30.0%
!! ACATGCGTTTAACTTTTCTT+TGG + contig288end:9621-9640 MsG0080048367.01.T01:intergenic 30.0%
!! CCAAGTTTGCTGATAATTAT+AGG - contig288end:8163-8182 MsG0080048367.01.T01:intron 30.0%
!! CTGTTTTTCACATTTTCTCT+TGG - contig288end:8054-8073 MsG0080048367.01.T01:intron 30.0%
!! GAGCAAGTTTTGATAAAAAC+TGG - contig288end:9672-9691 MsG0080048367.01.T01:intron 30.0%
!! GATGAATCAATTGATTTGGT+TGG + contig288end:5404-5423 MsG0080048367.01.T01:intergenic 30.0%
!! GATGGATTGCATATACTTTA+GGG + contig288end:5723-5742 MsG0080048367.01.T01:intergenic 30.0%
!! GTTTGAAACTCTGAAACAAA+TGG + contig288end:9936-9955 MsG0080048367.01.T01:intergenic 30.0%
!! TGATGGATTGCATATACTTT+AGG + contig288end:5724-5743 MsG0080048367.01.T01:intergenic 30.0%
!! TGTTGGTTAAATTTTGCATC+AGG + contig288end:6958-6977 MsG0080048367.01.T01:intergenic 30.0%
!!! ATGGCATGATTTTGATTTTC+TGG + contig288end:6473-6492 MsG0080048367.01.T01:intergenic 30.0%
!!! TCATTTGGTTATTTTGGTGA+AGG - contig288end:6397-6416 MsG0080048367.01.T01:intron 30.0%
AAACAGAATTCGCTGAGAAA+TGG + contig288end:7190-7209 MsG0080048367.01.T01:intergenic 35.0%
AAATATATGCAACCACTCCT+CGG + contig288end:8269-8288 MsG0080048367.01.T01:intergenic 35.0%
AACTGGTAGTTGTTGCAATT+TGG - contig288end:9689-9708 MsG0080048367.01.T01:intron 35.0%
AATTATCAGCAAACTTGGCA+TGG + contig288end:8161-8180 MsG0080048367.01.T01:intergenic 35.0%
ACTGAAATAGAAGCCAATAG+TGG + contig288end:7709-7728 MsG0080048367.01.T01:intergenic 35.0%
AGTCCTATAGTTGGATATCT+GGG + contig288end:6693-6712 MsG0080048367.01.T01:intergenic 35.0%
ATAGATACCACTAGTAAGGA+AGG + contig288end:7750-7769 MsG0080048367.01.T01:intergenic 35.0%
ATATTCATTGAAGGAGAGTG+GGG - contig288end:4950-4969 MsG0080048367.01.T01:intron 35.0%
ATTGCTAAAACTGGACTTTG+GGG - contig288end:9828-9847 MsG0080048367.01.T01:CDS 35.0%
CAAACCAATTCCATCAACAT+AGG + contig288end:7976-7995 MsG0080048367.01.T01:intergenic 35.0%
CAAATTTCTCGTATTCTTGG+TGG - contig288end:9993-10012 MsG0080048367.01.T01:CDS 35.0%
CAATTTCAGGAATGGTCTTT+AGG + contig288end:5459-5478 MsG0080048367.01.T01:intergenic 35.0%
CACACACAACTAACATAGTT+TGG - contig288end:9441-9460 MsG0080048367.01.T01:intron 35.0%
CAGAACACTTTGATGTGAAT+CGG + contig288end:8582-8601 MsG0080048367.01.T01:intergenic 35.0%
CATCATGAGTACATACAAGT+TGG - contig288end:7540-7559 MsG0080048367.01.T01:intron 35.0%
CATTGCTAAAACTGGACTTT+GGG - contig288end:9827-9846 MsG0080048367.01.T01:CDS 35.0%
CCTAAAAAAGAAGATGACCA+TGG + contig288end:7103-7122 MsG0080048367.01.T01:intergenic 35.0%
CCTCATCAATATAAGCAACT+CGG + contig288end:5308-5327 MsG0080048367.01.T01:intergenic 35.0%
CGAAAACACACTATTATGGA+AGG - contig288end:8079-8098 MsG0080048367.01.T01:intron 35.0%
CGACCGCTATTAATATTATG+AGG + contig288end:8978-8997 MsG0080048367.01.T01:intergenic 35.0%
CGTGGAGAAATATTCATTGA+AGG - contig288end:4941-4960 MsG0080048367.01.T01:intron 35.0%
CTTGTGGTCTACCATATATT+TGG - contig288end:8234-8253 MsG0080048367.01.T01:CDS 35.0%
CTTGTGTAAAAACAGGGTAA+AGG - contig288end:6249-6268 MsG0080048367.01.T01:intron 35.0%
GAAAAGAGTGATTATGCAAG+TGG - contig288end:7150-7169 MsG0080048367.01.T01:intron 35.0%
GAAACACTGCAAGAAACATA+AGG + contig288end:6815-6834 MsG0080048367.01.T01:intergenic 35.0%
GAATTTCTTAAGAAACACGG+TGG - contig288end:6666-6685 MsG0080048367.01.T01:CDS 35.0%
GACACATTGCATATACTGTA+GGG + contig288end:5589-5608 MsG0080048367.01.T01:intergenic 35.0%
GGAACGAAAACACACTATTA+TGG - contig288end:8075-8094 MsG0080048367.01.T01:intron 35.0%
TAAACGTGACATGCATGATT+TGG - contig288end:10197-10216 MsG0080048367.01.T01:exon 35.0%
TACAACAGGACATAGATTGT+TGG + contig288end:10055-10074 MsG0080048367.01.T01:intergenic 35.0%
TACCATAACCATATGGTTCA+TGG - contig288end:8293-8312 MsG0080048367.01.T01:intron 35.0%
TACTTGAGTTCGTATGGTTT+CGG - contig288end:8820-8839 MsG0080048367.01.T01:intron 35.0%
TAGCTAAGCATTTGTGTAAC+AGG - contig288end:6599-6618 MsG0080048367.01.T01:CDS 35.0%
TATAGTATTCACAAGCGATC+TGG - contig288end:5146-5165 MsG0080048367.01.T01:intron 35.0%
TCATTGCTAAAACTGGACTT+TGG - contig288end:9826-9845 MsG0080048367.01.T01:CDS 35.0%
TCTCAATCTGTTGTGCAAAT+CGG - contig288end:7935-7954 MsG0080048367.01.T01:intron 35.0%
TGACACATTGCATATACTGT+AGG + contig288end:5590-5609 MsG0080048367.01.T01:intergenic 35.0%
TGAGCATATTTCCTGTTAAG+AGG - contig288end:6020-6039 MsG0080048367.01.T01:intron 35.0%
TGGAAGAAGCTTTCAAAATG+AGG - contig288end:6631-6650 MsG0080048367.01.T01:CDS 35.0%
TGGTACTAATGTACAATTGC+AGG - contig288end:5271-5290 MsG0080048367.01.T01:intron 35.0%
TTAGTTATTCACAAGTGTCC+TGG + contig288end:9417-9436 MsG0080048367.01.T01:intergenic 35.0%
TTCTCACAAAATGAAGTTCG+AGG - contig288end:4853-4872 MsG0080048367.01.T01:intron 35.0%
TTGAGACCCTAAAATATCAG+GGG - contig288end:5628-5647 MsG0080048367.01.T01:intron 35.0%
TTGCATGTTTATGTCCAATC+AGG - contig288end:6840-6859 MsG0080048367.01.T01:CDS 35.0%
TTTCTCATATAGCTCTCCTT+AGG - contig288end:8611-8630 MsG0080048367.01.T01:CDS 35.0%
TTTGTGTGCCTACATCAATT+TGG + contig288end:5951-5970 MsG0080048367.01.T01:intergenic 35.0%
! AATCTTTGAGAGATCGAAAC+TGG + contig288end:9468-9487 MsG0080048367.01.T01:intergenic 35.0%
! ACTACAGGCTTTTCTTGATA+TGG - contig288end:4903-4922 MsG0080048367.01.T01:intron 35.0%
! ATGCATGATTTGGATGATAG+TGG - contig288end:10207-10226 MsG0080048367.01.T01:exon 35.0%
! ATTATCTGCTGCATTTTTGC+AGG - contig288end:8863-8882 MsG0080048367.01.T01:intron 35.0%
! CTATGTTGATGGAATTGGTT+TGG - contig288end:7974-7993 MsG0080048367.01.T01:intron 35.0%
! GAAGCAATTTGTACCAGTTT+TGG + contig288end:4738-4757 MsG0080048367.01.T01:intergenic 35.0%
! GCTTTTGTGCTTTTCATTCA+GGG - contig288end:7277-7296 MsG0080048367.01.T01:CDS 35.0%
! TACTTGATGATTGGACAGAT+TGG - contig288end:8376-8395 MsG0080048367.01.T01:intron 35.0%
! TATCCTCTAAAAGCAAAACC+TGG - contig288end:9127-9146 MsG0080048367.01.T01:intron 35.0%
! TCCTTTCCTTTTCAATCCAT+CGG - contig288end:8335-8354 MsG0080048367.01.T01:intron 35.0%
! TGCTTTTGTGCTTTTCATTC+AGG - contig288end:7276-7295 MsG0080048367.01.T01:CDS 35.0%
! TTATCTGCTGCATTTTTGCA+GGG - contig288end:8864-8883 MsG0080048367.01.T01:intron 35.0%
! TTGTGCAAATCGGATTTTGT+TGG - contig288end:7945-7964 MsG0080048367.01.T01:intron 35.0%
! TTTTTGCAGGGTATATCTGT+TGG - contig288end:8876-8895 MsG0080048367.01.T01:intron 35.0%
!! AAACCAGGTTTTGCTTTTAG+AGG + contig288end:9133-9152 MsG0080048367.01.T01:intergenic 35.0%
!! ACATACAAGTTGGTAAAGGA+AGG - contig288end:7550-7569 MsG0080048367.01.T01:intron 35.0%
!! ACTCAGAGAGCATATTTTAC+TGG - contig288end:6710-6729 MsG0080048367.01.T01:CDS 35.0%
!! CATACAAGTTGGTAAAGGAA+GGG - contig288end:7551-7570 MsG0080048367.01.T01:intron 35.0%
!! GAAACCAGTTTTGTGACAAT+TGG - contig288end:6862-6881 MsG0080048367.01.T01:intron 35.0%
!! GAGTACATACAAGTTGGTAA+AGG - contig288end:7546-7565 MsG0080048367.01.T01:intron 35.0%
!! TACCAGTTTTGGTCAATGTT+TGG + contig288end:4727-4746 MsG0080048367.01.T01:intergenic 35.0%
!! TCTCGGAGTCATTTTGTTAA+AGG - contig288end:8192-8211 MsG0080048367.01.T01:CDS 35.0%
!!! CCATGGTCATCTTCTTTTTT+AGG - contig288end:7100-7119 MsG0080048367.01.T01:intron 35.0%
!!! TCTCAGCGAATTCTGTTTTT+TGG - contig288end:7192-7211 MsG0080048367.01.T01:CDS 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + contig288end:6249-6268 MsG0080048367.01.T01:intergenic 35.0%
AAAAAAGTGGGAATCCTGGT+GGG - contig288end:8442-8461 MsG0080048367.01.T01:CDS 40.0%
AAGCCACTCATTGCTAAAAC+TGG - contig288end:9819-9838 MsG0080048367.01.T01:CDS 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - contig288end:6242-6261 MsG0080048367.01.T01:intron 40.0%
AGGAATATTGTCAAAGGGAG+AGG + contig288end:4760-4779 MsG0080048367.01.T01:intergenic 40.0%
ATAACCATATGGTTCATGGC+AGG - contig288end:8297-8316 MsG0080048367.01.T01:intron 40.0%
ATATAAGCAACTCGGAGAGA+TGG + contig288end:5300-5319 MsG0080048367.01.T01:intergenic 40.0%
ATTGGACAGATTGGCATAAG+TGG - contig288end:8385-8404 MsG0080048367.01.T01:CDS 40.0%
CAATGAGTAGGGACATATAC+AGG - contig288end:7637-7656 MsG0080048367.01.T01:intron 40.0%
CAATTCCATCAACATAGGCA+AGG + contig288end:7971-7990 MsG0080048367.01.T01:intergenic 40.0%
CAGAAGAAGAACTCCGTTTA+TGG - contig288end:4688-4707 MsG0080048367.01.T01:CDS 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - contig288end:6243-6262 MsG0080048367.01.T01:intron 40.0%
CCGAGTTGCTTATATTGATG+AGG - contig288end:5305-5324 MsG0080048367.01.T01:intron 40.0%
CCTCTGTATGATGCCATAAA+CGG + contig288end:4704-4723 MsG0080048367.01.T01:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - contig288end:6275-6294 MsG0080048367.01.T01:intron 40.0%
CTGTCCAATTGTCACAAAAC+TGG + contig288end:6869-6888 MsG0080048367.01.T01:intergenic 40.0%
CTTCATTATAAAGGGCAACC+CGG + contig288end:6341-6360 MsG0080048367.01.T01:intergenic 40.0%
GAAATATTGAGGGGTAACCT+TGG - contig288end:6162-6181 MsG0080048367.01.T01:intron 40.0%
GACAATTGGACAGAGATTGT+TGG - contig288end:6876-6895 MsG0080048367.01.T01:intron 40.0%
GAGTCCTATAGTTGGATATC+TGG + contig288end:6694-6713 MsG0080048367.01.T01:intergenic 40.0%
GATGTATTTCCGACAAGCAT+TGG - contig288end:4879-4898 MsG0080048367.01.T01:intron 40.0%
GATGTGAATCGGTGATTGAA+AGG + contig288end:8571-8590 MsG0080048367.01.T01:intergenic 40.0%
GCAAAGATAGCTAATGGGAA+TGG - contig288end:7606-7625 MsG0080048367.01.T01:intron 40.0%
GGTATGCATGGCCAAATATA+TGG + contig288end:8248-8267 MsG0080048367.01.T01:intergenic 40.0%
GGTCGCTAAGATGACAATTA+AGG - contig288end:8993-9012 MsG0080048367.01.T01:intron 40.0%
GTAAACCTCTACTGAAAGCT+TGG + contig288end:9974-9993 MsG0080048367.01.T01:intergenic 40.0%
GTCCTATAGTTGGATATCTG+GGG + contig288end:6692-6711 MsG0080048367.01.T01:intergenic 40.0%
GTGTACCTCCTGAAAAAAGT+GGG - contig288end:8430-8449 MsG0080048367.01.T01:CDS 40.0%
GTTGTTGTCATGTGACTGTA+AGG - contig288end:6198-6217 MsG0080048367.01.T01:intron 40.0%
TAACCATATGGTTCATGGCA+GGG - contig288end:8298-8317 MsG0080048367.01.T01:intron 40.0%
TAGGCTCAAAAGATCCAAGA+TGG + contig288end:9193-9212 MsG0080048367.01.T01:intergenic 40.0%
TATGGAAGGACATTGCTTCA+TGG - contig288end:8093-8112 MsG0080048367.01.T01:intron 40.0%
TATTCATTGAAGGAGAGTGG+GGG - contig288end:4951-4970 MsG0080048367.01.T01:intron 40.0%
TCGCATATTATCCACCAATG+AGG + contig288end:9521-9540 MsG0080048367.01.T01:intergenic 40.0%
TGAACTGGTGATTCTTCTTG+TGG - contig288end:8218-8237 MsG0080048367.01.T01:CDS 40.0%
TGCCATGAACCATATGGTTA+TGG + contig288end:8298-8317 MsG0080048367.01.T01:intergenic 40.0%
TGGAAGAAAGAAGAGAAGTC+CGG - contig288end:6558-6577 MsG0080048367.01.T01:CDS 40.0%
TGGTAGTTGTTGCAATTTGG+AGG - contig288end:9692-9711 MsG0080048367.01.T01:intron 40.0%
TGTTCATGACCCTATTAACC+TGG - contig288end:8651-8670 MsG0080048367.01.T01:CDS 40.0%
TTAGGAAAAGCCTCAAGACT+CGG + contig288end:9563-9582 MsG0080048367.01.T01:intergenic 40.0%
TTCAAAACTCCAGTCATGCA+GGG - contig288end:9153-9172 MsG0080048367.01.T01:intron 40.0%
TTCAACCAAGCTTTCAGTAG+AGG - contig288end:9966-9985 MsG0080048367.01.T01:intron 40.0%
TTCGCCTCTTGTGAAAATGA+TGG + contig288end:6492-6511 MsG0080048367.01.T01:intergenic 40.0%
TTCTTCCCGAAAGATAGACA+AGG - contig288end:5347-5366 MsG0080048367.01.T01:intron 40.0%
TTGAGCGAGGATATATTTGC+AGG - contig288end:7389-7408 MsG0080048367.01.T01:CDS 40.0%
TTTCAAAACTCCAGTCATGC+AGG - contig288end:9152-9171 MsG0080048367.01.T01:intron 40.0%
TTTCGGGAAGAATCTTTGCT+AGG + contig288end:5339-5358 MsG0080048367.01.T01:intergenic 40.0%
! AAAAAGAGCATGAGCATCTC+GGG - contig288end:8465-8484 MsG0080048367.01.T01:CDS 40.0%
! ATATGGCTAGTCATATCCCA+TGG - contig288end:7083-7102 MsG0080048367.01.T01:CDS 40.0%
! ATCATTTTCACAAGAGGCGA+AGG - contig288end:6491-6510 MsG0080048367.01.T01:CDS 40.0%
! CACAAAACTGGTTTCCTGAT+TGG + contig288end:6857-6876 MsG0080048367.01.T01:intergenic 40.0%
! CATGCCATCATTTTCACAAG+AGG - contig288end:6485-6504 MsG0080048367.01.T01:CDS 40.0%
! CCTTTCCTTTTCAATCCATC+GGG - contig288end:8336-8355 MsG0080048367.01.T01:intron 40.0%
! CGATTCACATCAAAGTGTTC+TGG - contig288end:8580-8599 MsG0080048367.01.T01:CDS 40.0%
! CTTGCCTATGTTGATGGAAT+TGG - contig288end:7969-7988 MsG0080048367.01.T01:intron 40.0%
! GAAAAAGAGCATGAGCATCT+CGG - contig288end:8464-8483 MsG0080048367.01.T01:CDS 40.0%
! GGCAGAAGATACTTGATGAT+TGG - contig288end:8367-8386 MsG0080048367.01.T01:intron 40.0%
! GGGATATGACTAGCCATATT+TGG + contig288end:7082-7101 MsG0080048367.01.T01:intergenic 40.0%
!! AGAGAGCATATTTTACTGGC+AGG - contig288end:6714-6733 MsG0080048367.01.T01:CDS 40.0%
!! AGTCCAGTTTTAGCAATGAG+TGG + contig288end:9825-9844 MsG0080048367.01.T01:intergenic 40.0%
!! CAAATCCCGATGGATTGAAA+AGG + contig288end:8344-8363 MsG0080048367.01.T01:intergenic 40.0%
!! GATGGAATTGGTTTGGAGAA+GGG - contig288end:7981-8000 MsG0080048367.01.T01:intron 40.0%
!! TGATGGAATTGGTTTGGAGA+AGG - contig288end:7980-7999 MsG0080048367.01.T01:intron 40.0%
!! TTTGGTTGGTAAAGCAGCTT+TGG + contig288end:5390-5409 MsG0080048367.01.T01:intergenic 40.0%
!!! GACTGGAGTTTTGAAAAACC+AGG + contig288end:9148-9167 MsG0080048367.01.T01:intergenic 40.0%
AACCATGCCAAGAAAGCTAC+CGG + contig288end:9912-9931 MsG0080048367.01.T01:intergenic 45.0%
ACAAGCGATCTGGTGATTCT+AGG - contig288end:5156-5175 MsG0080048367.01.T01:intron 45.0%
ACGACAAAGGAGCAATCCTA+AGG + contig288end:8630-8649 MsG0080048367.01.T01:intergenic 45.0%
AGGAAAATCCAACCAGTGAG+CGG - contig288end:5057-5076 MsG0080048367.01.T01:CDS 45.0%
AGGAAGGTTCAGAGTATACC+AGG + contig288end:7734-7753 MsG0080048367.01.T01:intergenic 45.0%
AGGTGAGCTTGAAGCAACAA+GGG + contig288end:9367-9386 MsG0080048367.01.T01:intergenic 45.0%
AGTAGCAATACCACGCATTC+CGG + contig288end:8495-8514 MsG0080048367.01.T01:intergenic 45.0%
AGTAGGGACATATACAGGCT+TGG - contig288end:7642-7661 MsG0080048367.01.T01:intron 45.0%
ATATTTGGCCATGCATACCG+AGG - contig288end:8249-8268 MsG0080048367.01.T01:CDS 45.0%
ATGGTGAGCAGACAATGAGT+AGG - contig288end:7625-7644 MsG0080048367.01.T01:intron 45.0%
ATTCATTGAAGGAGAGTGGG+GGG - contig288end:4952-4971 MsG0080048367.01.T01:intron 45.0%
ATTCTAGCAGTCATGCCAAC+AGG - contig288end:9030-9049 MsG0080048367.01.T01:intron 45.0%
CAAGCGATCTGGTGATTCTA+GGG - contig288end:5157-5176 MsG0080048367.01.T01:intron 45.0%
CACTAAGGGAAAGATAGAGG+CGG + contig288end:7848-7867 MsG0080048367.01.T01:intergenic 45.0%
CATAAGTGGATAAGCAACCG+CGG - contig288end:8399-8418 MsG0080048367.01.T01:CDS 45.0%
CCCTTCTTCAAGTCCACTAA+GGG + contig288end:7862-7881 MsG0080048367.01.T01:intergenic 45.0%
CCGTTTATGGCATCATACAG+AGG - contig288end:4701-4720 MsG0080048367.01.T01:CDS 45.0%
CCTGAAAAAAGTGGGAATCC+TGG - contig288end:8438-8457 MsG0080048367.01.T01:CDS 45.0%
CCTGTAGTTCCAATGCTTGT+CGG + contig288end:4891-4910 MsG0080048367.01.T01:intergenic 45.0%
CTCTGAACCTTCCTTACTAG+TGG - contig288end:7740-7759 MsG0080048367.01.T01:intron 45.0%
CTGGAAAAGAAGCTAGAGGA+GGG + contig288end:9398-9417 MsG0080048367.01.T01:intergenic 45.0%
CTTGATATGGCGAAGGATGA+AGG - contig288end:4916-4935 MsG0080048367.01.T01:intron 45.0%
GAAAAAAGTGGGAATCCTGG+TGG - contig288end:8441-8460 MsG0080048367.01.T01:CDS 45.0%
GAAGCAACAAGGGCAATTCA+TGG + contig288end:9357-9376 MsG0080048367.01.T01:intergenic 45.0%
GAATTGAAACCTGCAGCTCA+TGG + contig288end:7495-7514 MsG0080048367.01.T01:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - contig288end:6274-6293 MsG0080048367.01.T01:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - contig288end:6271-6290 MsG0080048367.01.T01:intron 45.0%
GGAAGGTTCAGAGTATACCA+GGG + contig288end:7733-7752 MsG0080048367.01.T01:intergenic 45.0%
GGCCAAACATTGACCAAAAC+TGG - contig288end:4722-4741 MsG0080048367.01.T01:CDS 45.0%
GGGGAGAGATCGAAACTTTA+AGG + contig288end:5693-5712 MsG0080048367.01.T01:intergenic 45.0%
GGGTCATGAACAAACGACAA+AGG + contig288end:8643-8662 MsG0080048367.01.T01:intergenic 45.0%
GGTGTACCTCCTGAAAAAAG+TGG - contig288end:8429-8448 MsG0080048367.01.T01:CDS 45.0%
GTCATGTGACTGTAAGGTCA+CGG - contig288end:6204-6223 MsG0080048367.01.T01:intron 45.0%
GTCCACTAAGGGAAAGATAG+AGG + contig288end:7851-7870 MsG0080048367.01.T01:intergenic 45.0%
GTCTATCAAATACATCGGGG+TGG + contig288end:7319-7338 MsG0080048367.01.T01:intergenic 45.0%
TAAGTTTCTCCATGAGCTGC+AGG - contig288end:7483-7502 MsG0080048367.01.T01:intron 45.0%
TCAATCCATCGGGATTTGAG+TGG - contig288end:8346-8365 MsG0080048367.01.T01:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG - contig288end:6205-6224 MsG0080048367.01.T01:intron 45.0%
TCCAAGATGGATCAACCATC+TGG + contig288end:9180-9199 MsG0080048367.01.T01:intergenic 45.0%
TCCAGATGGTTGATCCATCT+TGG - contig288end:9176-9195 MsG0080048367.01.T01:intron 45.0%
TGCTCTCTGAGTCCTATAGT+TGG + contig288end:6702-6721 MsG0080048367.01.T01:intergenic 45.0%
TGGCTTCTATTTCAGTACCC+TGG - contig288end:7713-7732 MsG0080048367.01.T01:intron 45.0%
TGGTGAGCAGACAATGAGTA+GGG - contig288end:7626-7645 MsG0080048367.01.T01:intron 45.0%
TGTCCTGGAAAAGAAGCTAG+AGG + contig288end:9402-9421 MsG0080048367.01.T01:intergenic 45.0%
TTCAGGGTGAGGTTCCATTA+TGG - contig288end:7293-7312 MsG0080048367.01.T01:CDS 45.0%
! AGACTTTTCCACCTGACAAG+AGG - contig288end:7335-7354 MsG0080048367.01.T01:CDS 45.0%
! AGGCTTTTCCTAACCCTTCT+GGG - contig288end:9570-9589 MsG0080048367.01.T01:CDS 45.0%
! GGCTTTTCTTGATATGGCGA+AGG - contig288end:4909-4928 MsG0080048367.01.T01:intron 45.0%
! TATTCTTGGTGGGCAGAAGA+GGG - contig288end:10004-10023 MsG0080048367.01.T01:CDS 45.0%
! TGTGCTTTTCATTCAGGGTG+AGG - contig288end:7282-7301 MsG0080048367.01.T01:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + contig288end:6238-6257 MsG0080048367.01.T01:intergenic 45.0%
! TTTGGAGAAGGGTTTTCGTG+AGG - contig288end:7992-8011 MsG0080048367.01.T01:intron 45.0%
!! CCCGATGGATTGAAAAGGAA+AGG + contig288end:8339-8358 MsG0080048367.01.T01:intergenic 45.0%
!! CCCTTAGTGGACTTGAAGAA+GGG - contig288end:7859-7878 MsG0080048367.01.T01:intron 45.0%
!! TAAAACTGGACTTTGGGGCT+CGG - contig288end:9833-9852 MsG0080048367.01.T01:CDS 45.0%
!! TCCCTTAGTGGACTTGAAGA+AGG - contig288end:7858-7877 MsG0080048367.01.T01:intron 45.0%
!!! CCAGGATTCCCACTTTTTTC+AGG + contig288end:8441-8460 MsG0080048367.01.T01:intergenic 45.0%
!!! GGATTCCCACTTTTTTCAGG+AGG + contig288end:8438-8457 MsG0080048367.01.T01:intergenic 45.0%
!!! AATTATTTTTATATACTTTA+GGG + contig288end:5563-5582 MsG0080048367.01.T01:intergenic 5.0%
!!! ATTATATTTTATATACTTTA+GGG - contig288end:5830-5849 MsG0080048367.01.T01:intron 5.0%
!!! TAATTATTTTTATATACTTT+AGG + contig288end:5564-5583 MsG0080048367.01.T01:intergenic 5.0%
!!! TATTATATTTTATATACTTT+AGG - contig288end:5829-5848 MsG0080048367.01.T01:intron 5.0%
AAAGATAGAGGCGGCCGTAA+AGG + contig288end:7839-7858 MsG0080048367.01.T01:intergenic 50.0%
ATACATCGGGGTGGCCATAA+TGG + contig288end:7310-7329 MsG0080048367.01.T01:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + contig288end:6182-6201 MsG0080048367.01.T01:intergenic 50.0%
CAAGCTGGAAATCTGCACTG+AGG + contig288end:8911-8930 MsG0080048367.01.T01:intergenic 50.0%
CAGGTGAGCTTGAAGCAACA+AGG + contig288end:9368-9387 MsG0080048367.01.T01:intergenic 50.0%
CCTGGAAAAGAAGCTAGAGG+AGG + contig288end:9399-9418 MsG0080048367.01.T01:intergenic 50.0%
CGCCTCTATCTTTCCCTTAG+TGG - contig288end:7846-7865 MsG0080048367.01.T01:intron 50.0%
CGGTGTAAGCAAGGCTTCTA+AGG - contig288end:7358-7377 MsG0080048367.01.T01:CDS 50.0%
CTTCACACCGGTAGCTTTCT+TGG - contig288end:9902-9921 MsG0080048367.01.T01:intron 50.0%
CTTCCTGGGCCTGCAATATT+GGG - contig288end:6437-6456 MsG0080048367.01.T01:CDS 50.0%
GCCCTTCTTCAAGTCCACTA+AGG + contig288end:7863-7882 MsG0080048367.01.T01:intergenic 50.0%
GGAAGGACATTGCTTCATGG+AGG - contig288end:8096-8115 MsG0080048367.01.T01:intron 50.0%
GGCCCCAGATATCCAACTAT+AGG - contig288end:6687-6706 MsG0080048367.01.T01:CDS 50.0%
TAAGGTCGTCAACTTGAGCG+AGG - contig288end:7376-7395 MsG0080048367.01.T01:CDS 50.0%
TATGGTTCATGGCAGGGACA+TGG - contig288end:8304-8323 MsG0080048367.01.T01:intron 50.0%
TCAGTGTTCACCGAGTCTTG+AGG - contig288end:9550-9569 MsG0080048367.01.T01:intron 50.0%
TGCAGGGTATATCTGTTGGC+AGG - contig288end:8880-8899 MsG0080048367.01.T01:intron 50.0%
TGTCCCTGCCATGAACCATA+TGG + contig288end:8304-8323 MsG0080048367.01.T01:intergenic 50.0%
TTCCCCTCACCCAATATTGC+AGG + contig288end:6449-6468 MsG0080048367.01.T01:intergenic 50.0%
TTCTGCCACTCAAATCCCGA+TGG + contig288end:8354-8373 MsG0080048367.01.T01:intergenic 50.0%
! ATAAGCAACCGCGGAGGTAT+CGG - contig288end:8408-8427 MsG0080048367.01.T01:CDS 50.0%
! CACCAATGAGGCACTCACAT+CGG + contig288end:9509-9528 MsG0080048367.01.T01:intergenic 50.0%
! CTCATGCTCTTTTTCCCACC+AGG + contig288end:8459-8478 MsG0080048367.01.T01:intergenic 50.0%
! CTTTTCCACCTGACAAGAGG+CGG - contig288end:7338-7357 MsG0080048367.01.T01:CDS 50.0%
! GAGGCTTTTCCTAACCCTTC+TGG - contig288end:9569-9588 MsG0080048367.01.T01:CDS 50.0%
! GTATTCTTGGTGGGCAGAAG+AGG - contig288end:10003-10022 MsG0080048367.01.T01:CDS 50.0%
! GTTGGTAAAGGAAGGGACGT+CGG - contig288end:7558-7577 MsG0080048367.01.T01:intron 50.0%
!! CCGACAAGCATTGGAACTAC+AGG - contig288end:4888-4907 MsG0080048367.01.T01:intron 50.0%
!! CCTCCTCTAGCTTCTTTTCC+AGG - contig288end:9396-9415 MsG0080048367.01.T01:intron 50.0%
!! GGGTTTGCTACTCTTCACAC+CGG - contig288end:9890-9909 MsG0080048367.01.T01:intron 50.0%
!! GTTGGCCTTGCCTATGTTGA+TGG - contig288end:7963-7982 MsG0080048367.01.T01:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG - contig288end:6217-6236 MsG0080048367.01.T01:intron 55.0%
AAGTGGATAAGCAACCGCGG+AGG - contig288end:8402-8421 MsG0080048367.01.T01:CDS 55.0%
AGCAGTCATGCCAACAGGCT+GGG - contig288end:9035-9054 MsG0080048367.01.T01:intron 55.0%
AGTTGGGTCCCAGAAGGGTT+AGG + contig288end:9581-9600 MsG0080048367.01.T01:intergenic 55.0%
CAACCACTCCTCGGTATGCA+TGG + contig288end:8260-8279 MsG0080048367.01.T01:intergenic 55.0%
CACCGGTAGCTTTCTTGGCA+TGG - contig288end:9907-9926 MsG0080048367.01.T01:intron 55.0%
CATGAGCATCTCGGGCATTC+CGG - contig288end:8473-8492 MsG0080048367.01.T01:intron 55.0%
CGATGTGAGTGCCTCATTGG+TGG - contig288end:9507-9526 MsG0080048367.01.T01:intron 55.0%
GACAAGAGGCGGTGTAAGCA+AGG - contig288end:7349-7368 MsG0080048367.01.T01:CDS 55.0%
GCTGGAAATCTGCACTGAGG+CGG + contig288end:8908-8927 MsG0080048367.01.T01:intergenic 55.0%
GCTTCCTGGGCCTGCAATAT+TGG - contig288end:6436-6455 MsG0080048367.01.T01:CDS 55.0%
GGCCTGCAATATTGGGTGAG+GGG - contig288end:6444-6463 MsG0080048367.01.T01:CDS 55.0%
GGCGGCAGAACTAGAGAGTA+AGG - contig288end:5037-5056 MsG0080048367.01.T01:CDS 55.0%
GGGCCTGCAATATTGGGTGA+GGG - contig288end:6443-6462 MsG0080048367.01.T01:CDS 55.0%
TAGCAGTCATGCCAACAGGC+TGG - contig288end:9034-9053 MsG0080048367.01.T01:intron 55.0%
TCACCCAATATTGCAGGCCC+AGG + contig288end:6443-6462 MsG0080048367.01.T01:intergenic 55.0%
TGCCGATGTGAGTGCCTCAT+TGG - contig288end:9504-9523 MsG0080048367.01.T01:intron 55.0%
TGCTTACACCGCCTCTTGTC+AGG + contig288end:7349-7368 MsG0080048367.01.T01:intergenic 55.0%
TGGGCCTGCAATATTGGGTG+AGG - contig288end:6442-6461 MsG0080048367.01.T01:CDS 55.0%
TTACACCGCCTCTTGTCAGG+TGG + contig288end:7346-7365 MsG0080048367.01.T01:intergenic 55.0%
! AGGTGAGTTGGGTCCCAGAA+GGG + contig288end:9586-9605 MsG0080048367.01.T01:intergenic 55.0%
! TAGGTGAGTTGGGTCCCAGA+AGG + contig288end:9587-9606 MsG0080048367.01.T01:intergenic 55.0%
! TGGCGAAGGATGAAGGTACG+TGG - contig288end:4923-4942 MsG0080048367.01.T01:intron 55.0%
!! CAGTACAGAGGTACTGGTCG+GGG - contig288end:8123-8142 MsG0080048367.01.T01:intron 55.0%
!! CGCAGTACAGAGGTACTGGT+CGG - contig288end:8121-8140 MsG0080048367.01.T01:intron 55.0%
!! GCAGTACAGAGGTACTGGTC+GGG - contig288end:8122-8141 MsG0080048367.01.T01:intron 55.0%
AACAGGCTGGGGAATGCTGC+AGG - contig288end:9047-9066 MsG0080048367.01.T01:intron 60.0%
ACTGAAGCTCCCGCATACGC+AGG + contig288end:6315-6334 MsG0080048367.01.T01:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - contig288end:6171-6190 MsG0080048367.01.T01:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - contig288end:6319-6338 MsG0080048367.01.T01:intron 60.0%
CAACCAGTGAGCGGTCGTTG+TGG - contig288end:5066-5085 MsG0080048367.01.T01:CDS 60.0%
CACAACGACCGCTCACTGGT+TGG + contig288end:5068-5087 MsG0080048367.01.T01:intergenic 60.0%
CCAGTCATGCAGGGTCCAGA+TGG - contig288end:9162-9181 MsG0080048367.01.T01:intron 60.0%
CCATCTGGACCCTGCATGAC+TGG + contig288end:9165-9184 MsG0080048367.01.T01:intergenic 60.0%
CTGAAGCTCCCGCATACGCA+GGG + contig288end:6314-6333 MsG0080048367.01.T01:intergenic 60.0%
GAGGTACACCGATACCTCCG+CGG + contig288end:8419-8438 MsG0080048367.01.T01:intergenic 60.0%
GCAGTCATGCCAACAGGCTG+GGG - contig288end:9036-9055 MsG0080048367.01.T01:intron 60.0%
GCTAGAGGAGGGAACTGCTC+AGG + contig288end:9387-9406 MsG0080048367.01.T01:intergenic 60.0%
TGCAGCATTCCCCAGCCTGT+TGG + contig288end:9048-9067 MsG0080048367.01.T01:intergenic 60.0%
TGGCCATGCATACCGAGGAG+TGG - contig288end:8254-8273 MsG0080048367.01.T01:CDS 60.0%
TGTCCACAACGACCGCTCAC+TGG + contig288end:5072-5091 MsG0080048367.01.T01:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - contig288end:6287-6306 MsG0080048367.01.T01:intron 60.0%
! CATGGAGGTGCGCAGTACAG+AGG - contig288end:8111-8130 MsG0080048367.01.T01:intron 60.0%
! GGTGCGCAGTACAGAGGTAC+TGG - contig288end:8117-8136 MsG0080048367.01.T01:intron 60.0%
! TCGGTTCGAGCACTTGCACG+TGG - contig288end:9852-9871 MsG0080048367.01.T01:CDS 60.0%
! TGAGGCACTCACATCGGCAG+CGG + contig288end:9503-9522 MsG0080048367.01.T01:intergenic 60.0%
!! AGGTACTGGTCGGGGTTTCG+TGG - contig288end:8131-8150 MsG0080048367.01.T01:intron 60.0%
CATACGCAGGGTCCGGGAAG+GGG + contig288end:6302-6321 MsG0080048367.01.T01:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + contig288end:6289-6308 MsG0080048367.01.T01:intergenic 65.0%
CTCGGGCATTCCGGAATGCG+TGG - contig288end:8482-8501 MsG0080048367.01.T01:intron 65.0%
CTTCCCGGACCCTGCGTATG+CGG - contig288end:6302-6321 MsG0080048367.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG + contig288end:6303-6322 MsG0080048367.01.T01:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - contig288end:6320-6339 MsG0080048367.01.T01:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - contig288end:6303-6322 MsG0080048367.01.T01:intron 65.0%
! GAGGCACTCACATCGGCAGC+GGG + contig288end:9502-9521 MsG0080048367.01.T01:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG + contig288end:6304-6323 MsG0080048367.01.T01:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + contig288end:6308-6327 MsG0080048367.01.T01:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + contig288end:6309-6328 MsG0080048367.01.T01:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig288end gene 4682 10239 4682 ID=MsG0080048367.01;Name=MsG0080048367.01
contig288end mRNA 4682 10239 4682 ID=MsG0080048367.01.T01;Parent=MsG0080048367.01;Name=MsG0080048367.01.T01;_AED=0.43;_eAED=0.43;_QI=25|0.45|0.41|1|0.90|0.83|12|0|580
contig288end exon 4682 4798 4682 ID=MsG0080048367.01.T01:exon:770;Parent=MsG0080048367.01.T01
contig288end exon 5010 5117 5010 ID=MsG0080048367.01.T01:exon:769;Parent=MsG0080048367.01.T01
contig288end exon 6418 6874 6418 ID=MsG0080048367.01.T01:exon:768;Parent=MsG0080048367.01.T01
contig288end exon 6999 7111 6999 ID=MsG0080048367.01.T01:exon:767;Parent=MsG0080048367.01.T01
contig288end exon 7187 7416 7187 ID=MsG0080048367.01.T01:exon:766;Parent=MsG0080048367.01.T01
contig288end exon 8186 8300 8186 ID=MsG0080048367.01.T01:exon:765;Parent=MsG0080048367.01.T01
contig288end exon 8383 8491 8383 ID=MsG0080048367.01.T01:exon:764;Parent=MsG0080048367.01.T01
contig288end exon 8580 8701 8580 ID=MsG0080048367.01.T01:exon:763;Parent=MsG0080048367.01.T01
contig288end exon 9553 9628 9553 ID=MsG0080048367.01.T01:exon:762;Parent=MsG0080048367.01.T01
contig288end exon 9714 9903 9714 ID=MsG0080048367.01.T01:exon:761;Parent=MsG0080048367.01.T01
contig288end exon 9984 10052 9984 ID=MsG0080048367.01.T01:exon:760;Parent=MsG0080048367.01.T01
contig288end exon 10178 10239 10178 ID=MsG0080048367.01.T01:exon:759;Parent=MsG0080048367.01.T01
contig288end five_prime_UTR 10215 10239 10215 ID=MsG0080048367.01.T01:five_prime_utr;Parent=MsG0080048367.01.T01
contig288end CDS 10178 10214 10178 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 9984 10052 9984 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 9714 9903 9714 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 9553 9628 9553 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 8580 8701 8580 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 8383 8491 8383 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 8186 8300 8186 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 7187 7416 7187 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 6999 7111 6999 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 6418 6874 6418 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 5010 5117 5010 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
contig288end CDS 4682 4798 4682 ID=MsG0080048367.01.T01:cds;Parent=MsG0080048367.01.T01
Gene Sequence

>MsG0080048367.01.T01

ATGGCATCATACAGAGGCCAAACATTGACCAAAACTGTTCGAGGAATGATGTATTTCCGACAAGCATTGGAACTACAGGCTTTTCTTGATATGGCGAAGGATGAAGAATTAATGAAAGGTTACAAGGCGGCAGAACTAGAGAGTAAGGAAAATCCAACCAGTGAGCGGTCGTTGTGGACACAATGTCAATCATTAGCCGACATGAAGTTCACATATGTAGTGTCATGTCAACAATATAGTATTCACAAGCGATCTGGTGATTCTAGGGCCAAAGAAATTTTAAAGCTCATGACTAAGTATCCATCTCTCCGAGTTGCTTATATTGATGAGGTTGAAGAGCCTAGCAAAGATTCTTCCCGAAAGATAGACAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTCAGTGCACCGGAATAAAGCTTCCTGGGCCTGCAATATTGGGTGAGGGGAAGCCAGAAAATCAAAATCATGCCATCATTTTCACAAGAGGCGAAGGCTTGCAAACAATTGATATGAATCAGGATAACTATATGGAAGAAGCTTTCAAAATGAGGAATTTGCTGCAAGAATTTCTTAAGAAACACGGTGGCCCCAGATATCCAACTATAGGACTCAGAGAGCATATTTTACTGGCAGGTTTCAATTCTACTTTACGTGAAGGAAATGTCACTCATCATGAGTACATACAAGTTGGTAAAGGAAGGGACGTCGGTCTTAACCAGATATCAATGTTTGAAGCAAAGATAGCTAATGGGAATGGTGAGCAGACAATGAGTAGGGACATATACAGGCTTGGACACCGATTTGATTTCTTCCGAATGTTATCTGTTTATTTCACCACTATTGGCTTCTATTTCAGTACCCTGCTGACAGTCCTCACAGTTTATGTATTCCTTTACGGCCGCCTCTATCTTTCCCTTAGTGGACTTGAAGAAGGGCTGAACAAACAAAGAGCTATTCGAGACAACAAGCTCTTCAATTGGCTCCTGTTTTTCACATTTTCTCTTGGAACGAAAACACACTATTATGGAAGGACATTGCTTCATGGAGGTGCGCAGTACAGAGGTACTGGTCGGGGTTTCGTGGTGTTCCATGCCAAGTTTGCTGATAATTATAGGCTCTATTCTCGGAGTCATTTTGTTAAAGGAATTGAACTGGTGATTCTTCTTGTGGTCTACCATATATTTGGCCATGCATACCGAGGAGTGGTTGCATATATTTTAATTACCATAACCATATGGTTCATGGCAGGGACATGGCTCTTTGCTCCTTTCCTTTTCAATCCATCGGGATTTGAGTGGCAGAAGATACTTGATGATTGGACAGATTGGCATAAGTGGATAAGCAACCGCGGAGGTATCGGTGTACCTCCTGAAAAAAGTGGGAATCCTGGTGGGAAAAAGAGCATGAGCATCTCGGGCATTCCGGAATGCGTGATTGCACAAGCTTGTAAGCCACTCATTGCTAAAACTGGACTTTGGGGCTCGGTTCGAGCACTTGCACGTGGATATGAAGTAATAATGGGTTTGCTACTCTTCACACCGTCACATGTTGTCACATTATTAGAAGAGTTTGATTTCAAAGGCTATTGTTGTTACCTTGATCAAATTCTATTTTTTAAACGTGACATGCATGATTTGGATGATAGTGGAAGCTATTAG
Protein sequence

>MsG0080048367.01.T01

MASYRGQTLTKTVRGMMYFRQALELQAFLDMAKDEELMKGYKAAELESKENPTSERSLWTQCQSLADMKFTYVVSCQQYSIHKRSGDSRAKEILKLMTKYPSLRVAYIDEVEEPSKDSSRKIDKVTGSSPGNSLLCKNRVKAAYNTPNGGTPSRTLRMRELQCTGIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDMNQDNYMEEAFKMRNLLQEFLKKHGGPRYPTIGLREHILLAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTMSRDIYRLGHRFDFFRMLSVYFTTIGFYFSTLLTVLTVYVFLYGRLYLSLSGLEEGLNKQRAIRDNKLFNWLLFFTFSLGTKTHYYGRTLLHGGAQYRGTGRGFVVFHAKFADNYRLYSRSHFVKGIELVILLVVYHIFGHAYRGVVAYILITITIWFMAGTWLFAPFLFNPSGFEWQKILDDWTDWHKWISNRGGIGVPPEKSGNPGGKKSMSISGIPECVIAQACKPLIAKTGLWGSVRALARGYEVIMGLLLFTPSHVVTLLEEFDFKGYCCYLDQILFFKRDMHDLDDSGSY*