AlfalfaGEDB | MsG0080048423.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048423.01

KEGG: K13508
GO: GO:0008152 GO:0016746
PFAM: PF01553

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048423.01.T01	XP_003614938.2	97.137	489	14	0	1	489	1	489	0	984

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048423.01.T01	Q9SYJ2	51.653	484	221	10	11	484	40	520	5.36E-169	489

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048423.01.T01	G7K9Z4	97.137	489	14	0	1	489	1	489	0.0	984

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048423.01	MsG0280010300.01	0.810214	1.288341e-50	7.719911e-48
MsG0080048423.01	MsG0580024180.01	0.800071	1.711527e-48	7.895492e-46
MsG0080048423.01	MsG0780039338.01	0.803189	3.926031e-49	1.960361e-46
MsG0080048423.01	MsG0780041074.01	0.816275	6.013799e-52	4.242537e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048423.01.T01	MTR_5g061520	97.137	489	14	0	1	489	1	489	0.0	984
MsG0080048423.01.T01	MTR_1g086650	51.943	489	224	8	5	488	54	536	6.12e-172	495
MsG0080048423.01.T01	MTR_5g091660	49.684	475	220	8	15	480	64	528	5.75e-159	462
MsG0080048423.01.T01	MTR_3g448430	46.934	473	233	10	15	479	47	509	3.35e-147	431
MsG0080048423.01.T01	MTR_8g030620	42.798	486	256	8	8	479	18	495	1.94e-121	365
MsG0080048423.01.T01	MTR_4g415290	42.300	487	266	8	10	487	15	495	5.70e-121	363
MsG0080048423.01.T01	MTR_1g040500	41.010	495	272	11	8	487	10	499	1.63e-120	365
MsG0080048423.01.T01	MTR_5g080360	40.125	481	263	9	17	482	3	473	2.11e-116	352
MsG0080048423.01.T01	MTR_3g048330	58.929	280	108	3	210	485	1	277	5.11e-116	343
MsG0080048423.01.T01	MTR_7g067380	39.468	489	290	4	2	486	10	496	6.64e-116	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048423.01.T01	AT4G01950	51.653	484	221	10	11	484	40	520	5.46e-170	489
MsG0080048423.01.T01	AT4G01950	51.653	484	221	10	11	484	68	548	1.75e-169	489
MsG0080048423.01.T01	AT1G02390	50.204	490	221	8	8	480	43	526	1.28e-165	479
MsG0080048423.01.T01	AT1G06520	47.205	483	232	10	17	480	105	583	1.08e-149	440
MsG0080048423.01.T01	AT2G38110	42.227	476	260	9	14	479	22	492	3.96e-119	359
MsG0080048423.01.T01	AT3G11430	39.959	483	267	9	14	482	9	482	4.86e-119	358
MsG0080048423.01.T01	AT5G06090	40.329	486	271	12	9	482	2	480	3.16e-118	357
MsG0080048423.01.T01	AT1G01610	42.380	479	263	8	17	485	23	498	1.69e-116	352
MsG0080048423.01.T01	AT4G00400	41.949	472	261	7	17	479	23	490	5.77e-111	338
MsG0080048423.01.T01	AT3G11325	32.104	461	213	9	26	482	6	370	4.97e-72	234

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Find 88 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCAACCATTATTCT+TGG	0.248292	contig312end:+14009	None:intergenic
AAATGAAATTGGAAAGAGTT+TGG	0.246873	contig312end:-12340	MsG0080048423.01.T01:CDS
AACCTTGTAGTGTGTCCAGA+AGG	0.589664	contig312end:-12624	MsG0080048423.01.T01:CDS
AACTTGCAGTTATTATGACA+AGG	0.600625	contig312end:+12233	None:intergenic
AAGGAAACTAGCATGAAGTA+AGG	0.462736	contig312end:+14270	None:intergenic
AAGTAATGAATATTACCTGG+TGG	0.625285	contig312end:-12144	MsG0080048423.01.T01:three_prime_UTR
AAGTTCTACTTAGAAGATGT+TGG	0.556652	contig312end:-14090	MsG0080048423.01.T01:CDS
AATGAAATTGGAAAGAGTTT+GGG	0.331774	contig312end:-12339	MsG0080048423.01.T01:CDS
AATTGTAGTTATACTTGTTT+TGG	0.249787	contig312end:+14432	None:intergenic
ACAAAATTAGCAACTTCAAC+AGG	0.421254	contig312end:+12366	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTTCAACCATTATTCT+TGG	+	contig312end:12475-12494	None:intergenic	30.0%
AACTTGCAGTTATTATGACA+AGG	+	contig312end:14251-14270	None:intergenic	30.0%
AAGTAATGAATATTACCTGG+TGG	-	contig312end:14337-14356	MsG0080048423.01.T01:CDS	30.0%
AAGTTCTACTTAGAAGATGT+TGG	-	contig312end:12391-12410	MsG0080048423.01.T01:CDS	30.0%
ACAAAATTAGCAACTTCAAC+AGG	+	contig312end:14118-14137	None:intergenic	30.0%
ACAAGCAAAGAGAATAGTAT+TGG	-	contig312end:12613-12632	MsG0080048423.01.T01:CDS	30.0%
ACATCACAAACATGTCAAAA+AGG	-	contig312end:14082-14101	MsG0080048423.01.T01:CDS	30.0%
ACATCTTCTAAGTAGAACTT+TGG	+	contig312end:12391-12410	None:intergenic	30.0%
AGAGACATAAAGTCATACAA+TGG	-	contig312end:12532-12551	MsG0080048423.01.T01:CDS	30.0%
AGTAATGAATATTACCTGGT+GGG	-	contig312end:14338-14357	MsG0080048423.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig312end	gene	12030	14473	12030	ID=MsG0080048423.01;Name=MsG0080048423.01
contig312end	mRNA	12030	14473	12030	ID=MsG0080048423.01.T01;Parent=MsG0080048423.01;Name=MsG0080048423.01.T01;_AED=0.17;_eAED=0.17;_QI=82\|1\|1\|1\|1\|1\|2\|215\|489
contig312end	exon	12030	13135	12030	ID=MsG0080048423.01.T01:exon:4503;Parent=MsG0080048423.01.T01
contig312end	exon	13813	14473	13813	ID=MsG0080048423.01.T01:exon:4502;Parent=MsG0080048423.01.T01
contig312end	five_prime_UTR	14392	14473	14392	ID=MsG0080048423.01.T01:five_prime_utr;Parent=MsG0080048423.01.T01
contig312end	CDS	13813	14391	13813	ID=MsG0080048423.01.T01:cds;Parent=MsG0080048423.01.T01
contig312end	CDS	12245	13135	12245	ID=MsG0080048423.01.T01:cds;Parent=MsG0080048423.01.T01
contig312end	three_prime_UTR	12030	12244	12030	ID=MsG0080048423.01.T01:three_prime_utr;Parent=MsG0080048423.01.T01

Gene Sequence

>MsG0080048423.01.T01

ATGAAAAACCTTTCACTTGCCAACAAAACTTCTAAACTTTCAAATAAAACACTAGTTTTTGATTTTGAAGGCACTCTTCTAAGATCCACTTCACTCTTCCCTTACTTCATGCTAGTTTCCTTTGAAGCTGGTGGAATACTAAGATCTATCATTTTGTTTCTTTCATACCCTTTGGTATGGTTAGTTGGTGAGTATCAACTAGGTTTGAAGATTATGGTTTTCTTAACCTTTTTTGGTATAAGAAAAGACACTTTAAGGGTAGGAATGGCTGTTCTTCCAAAGTTCTACTTAGAAGATGTTGGTTGGGAAGGATTTGAAGCTGTGATGTGTTGTGAGAGAAAAGTTGCATCTAGTAAGTTACCAAGAATAATGGTTGAAGGTTTCTTGAAAGACTATTTAGGGGTTGAAGCTATTGTAGCAAGAGACATAAAGTCATACAATGGTTACTTTTTGGGTTTGTTTGAGAAACATAAAACAACCACTTCCTATGATGTTAAAGCAACAAGCAAAGAGAATAGTATTGGTATTATTGGTAGCCATATTGAGTATATTGACCAGAAACTTTTCCCTCATTACAAGAAGATTTGCTTTATGTTAAGTTCTGATGAGAGGAGAAATTGGCGTGTATTACCAAAAAAGTTGTTTCCTAAGCCATTGATTTTCCATGATGGAAGATTGGCTTTCATGCCAACTGTAACATCTTCACTAGTCATGTTCATGTGGTTACCACTTGGACTATTTCTTTCAATTTTCAGAATAACATTTGGAGTTTCATTACCTTTTAATGCATCAGCTCCAATATTAGCATTTTCAGGGACAAGAAGCACAATTTCAAGCCCTAAAACCTCGACCGAAAACGAAAAAAATCAAAAGAATATGCTTTATGTGTGTAACCATAGAACTTTGCTTGATCCACTTTATATATCACACACTATAAACAAACCACTCTCAGCAGTCACATATAGCATGAGCAGAGTCAATGAGATTATTTCCCCTATTAAAACAACGCGATTAACGCGCGACCGAGCAAGAGACAGGGATTCAATGGAGAAAATGCTTTGTGAAGGAAACCTTGTAGTGTGTCCAGAAGGAACAACTTGTAGAGAGCCTTACTTGCTAAGGTTTAGTCCTTTGTTTGCTGAACTAACTGATGATATTGTTCCTGTTGCTGTTGATGTTAAGGTTAGTATGTTTTATGGAACAACAGCTAGTGGATATAAATGTTTGGATCCTGTTTTTCATTACTTGAATCCAAATCCTGTTTACTTTGTTAAAATACTTGAGAGGATACCAACATCACAAACATGTCAAAAAGGTGGAAAATCTCCTGTTGAAGTTGCTAATTTTGTGCAAAATGAAATTGGAAAGAGTTTGGGATTTGGTTGCACCAATTTGACTAGGAAAGACAAATATATGATTTTGGCAGGTAATGAAGGTGTGAGTAGCAATAACAAACAATCCTTGTCATAA

Protein sequence

>MsG0080048423.01.T01

MKNLSLANKTSKLSNKTLVFDFEGTLLRSTSLFPYFMLVSFEAGGILRSIILFLSYPLVWLVGEYQLGLKIMVFLTFFGIRKDTLRVGMAVLPKFYLEDVGWEGFEAVMCCERKVASSKLPRIMVEGFLKDYLGVEAIVARDIKSYNGYFLGLFEKHKTTTSYDVKATSKENSIGIIGSHIEYIDQKLFPHYKKICFMLSSDERRNWRVLPKKLFPKPLIFHDGRLAFMPTVTSSLVMFMWLPLGLFLSIFRITFGVSLPFNASAPILAFSGTRSTISSPKTSTENEKNQKNMLYVCNHRTLLDPLYISHTINKPLSAVTYSMSRVNEIISPIKTTRLTRDRARDRDSMEKMLCEGNLVVCPEGTTCREPYLLRFSPLFAELTDDIVPVAVDVKVSMFYGTTASGYKCLDPVFHYLNPNPVYFVKILERIPTSQTCQKGGKSPVEVANFVQNEIGKSLGFGCTNLTRKDKYMILAGNEGVSSNNKQSLS*