AlfalfaGEDB | MsG0080048805.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048805.01

KEGG: K20098
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048805.01.T01	KEH30696.1	76.375	927	71	12	4	870	34	872	0	1315

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048805.01.T01	F4I2H2	58.868	919	229	14	6	866	35	862	0	1015

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048805.01.T01	A0A072UMT6	76.375	927	71	12	4	870	34	872	0.0	1315

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0780040367.01	MsG0080048805.01	PPI
MsG0880046382.01	MsG0080048805.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048805.01.T01	MTR_4g078495	76.375	927	71	12	4	870	34	872	0.0	1315
MsG0080048805.01.T01	MTR_4g078460	76.160	927	73	12	4	870	320	1158	0.0	1311
MsG0080048805.01.T01	MTR_4g078460	81.198	601	25	5	4	602	320	834	0.0	966
MsG0080048805.01.T01	MTR_1g069755	37.931	232	136	2	570	795	730	959	3.91e-45	177
MsG0080048805.01.T01	MTR_1g069755	28.261	322	179	7	149	431	387	695	2.39e-35	146
MsG0080048805.01.T01	MTR_5g004720	31.132	318	191	7	132	434	167	471	1.44e-37	152
MsG0080048805.01.T01	MTR_5g004720	44.805	154	81	3	571	721	534	686	5.55e-30	128
MsG0080048805.01.T01	MTR_1g053955	41.520	171	99	1	574	743	1061	1231	1.46e-35	147
MsG0080048805.01.T01	MTR_1g053955	31.338	284	170	7	153	430	521	785	4.26e-34	142
MsG0080048805.01.T01	MTR_8g094070	36.538	208	122	2	583	788	749	948	4.29e-34	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048805.01.T01	AT1G03750	58.868	919	229	14	6	866	35	862	0.0	1015
MsG0080048805.01.T01	AT2G18760	44.565	184	99	1	551	734	706	886	1.02e-45	179
MsG0080048805.01.T01	AT2G18760	28.931	318	174	6	152	431	384	687	3.65e-37	152
MsG0080048805.01.T01	AT2G18760	44.565	184	99	1	551	734	706	886	1.02e-45	179
MsG0080048805.01.T01	AT2G18760	28.931	318	174	6	152	431	384	687	3.65e-37	152
MsG0080048805.01.T01	AT2G18760	44.565	184	99	1	551	734	706	886	1.02e-45	179
MsG0080048805.01.T01	AT2G18760	28.931	318	174	6	152	431	384	687	3.65e-37	152
MsG0080048805.01.T01	AT2G18760	44.565	184	99	1	551	734	706	886	1.02e-45	179
MsG0080048805.01.T01	AT2G18760	28.931	318	174	6	152	431	384	687	3.65e-37	152
MsG0080048805.01.T01	AT2G18760	44.565	184	99	1	551	734	706	886	1.02e-45	179

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Find 4 sgRNAs with CRISPR-Local

Find 537 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAATATGAACATGATGCAA+CGG	0.577807	contig453end:-17715	MsG0080048805.01.T01:exon
GTCTGTGTAATTGTTTCATA+TGG	0.342213	contig453end:+17754	None:intergenic
TAATATGAACATGATGCAAC+GGG	0.489814	contig453end:-17714	MsG0080048805.01.T01:intron
TAATTGTTTCATATGGTAAT+TGG	0.288503	contig453end:+17761	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTGTGTTAACCCTC+CGG	-	contig453end:17243-17262	MsG0080048805.01.T01:intron	30.0%
AAATAGGAAAAACAGAAGAG+GGG	+	contig453end:12204-12223	None:intergenic	30.0%
AACATAGTATGTAACAAGCA+TGG	+	contig453end:17481-17500	None:intergenic	30.0%
AAGACCAAAAGAAACAACTA+TGG	+	contig453end:15228-15247	None:intergenic	30.0%
AAGCAAAAAATATGGAGTGT+CGG	+	contig453end:14610-14629	None:intergenic	30.0%
ACATATTATGCGGTAAAAAC+CGG	+	contig453end:12238-12257	None:intergenic	30.0%
ACGTCTTCAAATTCAATATC+TGG	+	contig453end:16109-16128	None:intergenic	30.0%
AGTCAAAATCAATCATGAAG+TGG	+	contig453end:12578-12597	None:intergenic	30.0%
AGTTAAACAGCAGGAAAATA+CGG	+	contig453end:15280-15299	None:intergenic	30.0%
ATATATGTTGAGAAGGACAA+AGG	-	contig453end:13608-13627	MsG0080048805.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig453end	gene	10001	17781	10001	ID=MsG0080048805.01;
contig453end	mRNA	10001	17781	10001	ID=MsG0080048805.01.T01;Parent=MsG0080048805.01
contig453end	exon	10001	10305	10001	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	10109	10305	10109	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	CDS	10909	11232	10909	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	10909	11232	10909	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	11825	11900	11825	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	11825	11900	11825	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	11984	12259	11984	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	11984	12259	11984	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	12339	12465	12339	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	12339	12465	12339	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	12715	12934	12715	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	12715	12934	12715	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	13565	13683	13565	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	13565	13683	13565	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	13854	14780	13854	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	13854	14780	13854	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	15617	15700	15617	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	15617	15700	15617	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	16101	16148	16101	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	16101	16148	16101	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	16237	16331	16237	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	16237	16331	16237	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	16767	17060	16767	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	16767	17060	16767	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01
contig453end	CDS	17715	17732	17715	ID=MsG0080048805.01.T01.cds;Parent=MsG0080048805.01.T01
contig453end	exon	17715	17781	17715	ID=MsG0080048805.01.T01.exon;Parent=MsG0080048805.01.T01

Gene Sequence

>MsG0080048805.01.T01

ATGAACATGATGCAACGGAAAACCCCCAAATCCTCTCTTGCCCACCACCTTCGTCTCCTTGAAGACCCCGATGACCCACCTTTTCAGCCCCATGATTTCCTTTCCCAACATAACCACTCCAAAACCCAACAAGAATTAAAATTAGATGATGAAGAAGAAGAAGATGACGAGGAAGAAGAAGAAGAAAAGGAAGAGGCAGAGATAAAGTGTGTGAAATTTAGTTCTGTTAAATCCTCTCAGATTCAATTTGATCATACTGGACCCTTTGAGCCCTTGGTTTTGTCTTCTGATGGAGAACTTCCCTTGGTTCAGGTATCAGGTTCGAATCTGCCAGGTGCTAACAATTTATGTGCTGGGCCAGTCCATACAGAGCTTTGCTCTGACTTCAGTTGGGCCTCTAGTACATGGCCAAATACCTCCCTGGGTCCTTTAAGTTTCACGTTTGTAACAGATAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAATAATAAGGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGACTCCATTCTTAGCGAGACGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTCAGCGTTGCCATTTATCATGGTGCAAACCGGGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACTTACAGGATTCACGGCAGCAGTTCCTTATCAGATATACACTGGAACACTGTGATTATTGATGAGGCTCATCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTAGTTGCACCTGGATCCCTTGGAACGCGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACCGCTCCTGATAGATTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTATCAGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTGCAAAAACGCATTTATAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAACAAGGACCTACCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGACTGTACCAGATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTCGATGATGGATGTGATTCATGCCCCTATTGTATTGTCCTTCCATGCCTTGTCAAGCTACAACAGGTTAAATCAGTAGTTGTAACGGGGATGAGAAAGAGAGGCGTGAATTATCTCAAGAAGGCATGTTTGTTATCTGTTAAGATGGAAGTAGATATGGACAAGGATATGGATATTCAATTTAATAAGGCCAAACCCAAAGATGACCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGTGGGAGCATGCAGAATGAGAGTTTCCTGGGTCTAAGTGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTGTTGTTGTCATGGTTTTCACATGGCGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTCGGATTGAACCTTGTCAGTGCAAACCGTGTCGTAATATTTGATCCCAACTGGAATCCCTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATATGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGCATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGCATTGTCTACGCTCATCGCAATGAAGACATTGTCAACTCCCGACCAGTGATTCAAAGGCAGTTATCTACCAGCAGCACCCTTTCAAGCGATGGCGAAAGCGAGCCAAGCAGCACTTTAGTCCATGAAAGGAAGAAACCAGAATGTGTACCTAAAAAACAGAAAATTCCTTTGATTGATGAAAGGAAGAGAGCCCAATTTAGCCTCCTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCAGCCACTTCAGTAGAGAGAGAAAAAGTGCTTATAGACTACAAGAAGAAAAAGAAAAAGCTTAAAGGCCATGCTTGTTACATACTATGTTGTCAAAAGCATCTGCTATTGCGGCGCGGCGCAGCCAAATCTAAGAATCCGCTACCAAGCGCTCTGGAGCGGAGCGAAAGTGTAAGCTGGGAAAATCGGACACAATCTTGTGGAGCAGAGCGGTTAGGTAGCGGCGAAGAGACAAGGGGAGGAAGAGGAAAGAGAATATGGTGA

Protein sequence

>MsG0080048805.01.T01

MNMMQRKTPKSSLAHHLRLLEDPDDPPFQPHDFLSQHNHSKTQQELKLDDEEEEDDEEEEEEKEEAEIKCVKFSSVKSSQIQFDHTGPFEPLVLSSDGELPLVQVSGSNLPGANNLCAGPVHTELCSDFSWASSTWPNTSLGPLSFTFVTDRLLEHQRVGVKFLYDLYKNNKGGILGDDMGLGKTIQTIAFLAAIFGKEGDSILSETRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVAIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGSSSLSDIHWNTVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVSVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPDGAIWPYLHKDNLDDGCDSCPYCIVLPCLVKLQQVKSVVVTGMRKRGVNYLKKACLLSVKMEVDMDKDMDIQFNKAKPKDDPDKQVKDAKFAAAVYGPDIDLVGGSMQNESFLGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKAFQGELFGICNLFRDLSDKLFTSIVYAHRNEDIVNSRPVIQRQLSTSSTLSSDGESEPSSTLVHERKKPECVPKKQKIPLIDERKRAQFSLLAESMGMGELAFSKWLLSATSVEREKVLIDYKKKKKKLKGHACYILCCQKHLLLRRGAAKSKNPLPSALERSESVSWENRTQSCGAERLGSGEETRGGRGKRIW*