AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000605.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000605.01.T01 MTR_1g012430 79.921 254 28 2 50 280 46 299 1.62e-132 381
MsG0180000605.01.T01 MTR_1g111280 43.386 189 93 5 56 231 76 263 1.40e-43 154
MsG0180000605.01.T01 MTR_1g102170 41.489 188 104 4 48 231 74 259 1.89e-42 150
MsG0180000605.01.T01 MTR_7g406880 37.198 207 108 6 56 240 71 277 2.17e-42 151
MsG0180000605.01.T01 MTR_4g086540 35.496 262 137 11 50 294 62 308 1.18e-39 143
MsG0180000605.01.T01 MTR_8g035540 34.259 216 128 6 29 231 25 239 2.74e-38 139
MsG0180000605.01.T01 MTR_6g464120 39.227 181 105 2 56 231 66 246 6.42e-38 142
MsG0180000605.01.T01 MTR_4g050140 41.622 185 92 8 57 228 55 236 6.83e-38 138
MsG0180000605.01.T01 MTR_4g086510 35.366 246 126 9 52 267 54 296 1.88e-36 134
MsG0180000605.01.T01 MTR_3g101420 40.212 189 95 6 48 226 49 229 2.53e-36 134
MsG0180000605.01.T01 MTR_6g464280 38.547 179 100 4 57 226 62 239 4.33e-36 134
MsG0180000605.01.T01 MTR_7g056207 39.378 193 105 6 52 235 86 275 1.50e-35 133
MsG0180000605.01.T01 MTR_6g065110 37.824 193 105 4 51 231 68 257 1.62e-35 132
MsG0180000605.01.T01 MTR_1g089310 40.351 171 90 4 65 231 117 279 3.55e-35 132
MsG0180000605.01.T01 MTR_1g089310 40.351 171 90 4 65 231 101 263 3.62e-35 132
MsG0180000605.01.T01 MTR_8g035520 37.500 176 102 4 69 237 79 253 3.87e-35 131
MsG0180000605.01.T01 MTR_7g107040 41.667 180 92 5 57 226 57 233 9.62e-35 130
MsG0180000605.01.T01 MTR_6g065120 39.362 188 108 4 47 231 74 258 9.23e-34 128
MsG0180000605.01.T01 MTR_6g065430 39.444 180 101 4 57 231 74 250 2.21e-33 127
MsG0180000605.01.T01 MTR_6g065370 41.818 165 91 3 69 231 95 256 2.31e-33 127
MsG0180000605.01.T01 MTR_6g065400 42.424 165 90 3 69 231 95 256 2.79e-33 126
MsG0180000605.01.T01 MTR_6g464510 34.802 227 133 6 57 271 68 291 4.87e-33 125
MsG0180000605.01.T01 MTR_1g102160 36.449 214 117 8 50 251 57 263 5.02e-33 125
MsG0180000605.01.T01 MTR_6g464320 35.870 184 108 4 57 231 63 245 5.49e-33 125
MsG0180000605.01.T01 MTR_4g086480 33.197 244 133 7 51 267 57 297 1.15e-32 124
MsG0180000605.01.T01 MTR_7g093950 39.181 171 95 4 65 231 102 267 1.20e-32 125
MsG0180000605.01.T01 MTR_4g086470 39.344 183 100 5 51 226 56 234 3.35e-32 123
MsG0180000605.01.T01 MTR_3g012440 34.728 239 126 7 56 265 73 310 4.21e-32 123
MsG0180000605.01.T01 MTR_0007s0520 33.921 227 132 7 12 231 29 244 6.30e-32 122
MsG0180000605.01.T01 MTR_6g065270 38.788 165 96 3 69 231 97 258 2.68e-31 121
MsG0180000605.01.T01 MTR_8g040860 33.466 251 136 9 54 274 65 314 7.60e-29 114
MsG0180000605.01.T01 MTR_1g082210 36.095 169 100 3 65 231 101 263 1.90e-28 113
MsG0180000605.01.T01 MTR_3g450680 38.983 177 85 6 58 220 72 239 4.49e-28 112
MsG0180000605.01.T01 MTR_6g065340 40.441 136 78 2 69 204 106 238 6.16e-27 109
MsG0180000605.01.T01 MTR_1g105020 29.779 272 152 11 54 291 57 323 1.84e-25 105
MsG0180000605.01.T01 MTR_1g104930 34.498 229 120 5 54 253 59 286 1.30e-24 102
MsG0180000605.01.T01 MTR_1g104933 35.169 236 105 10 54 253 57 280 2.16e-24 102
MsG0180000605.01.T01 MTR_5g005850 27.778 252 147 6 56 274 65 314 2.05e-23 99.4
MsG0180000605.01.T01 MTR_5g005900 33.333 177 108 4 54 220 58 234 2.41e-23 99.4
MsG0180000605.01.T01 MTR_8g035500 33.679 193 114 6 51 231 51 241 2.68e-22 96.3
MsG0180000605.01.T01 MTR_5g005920 31.638 177 109 4 54 220 62 236 6.92e-22 95.1
MsG0180000605.01.T01 MTR_7g051020 33.333 204 98 8 97 266 104 303 1.25e-20 91.7
MsG0180000605.01.T01 MTR_0007s0480 36.667 90 52 2 147 231 1 90 1.37e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000605.01.T01 AT5G16080 43.085 188 94 5 57 231 77 264 1.46e-47 164
MsG0180000605.01.T01 AT1G68620 41.848 184 99 3 54 230 71 253 2.57e-44 155
MsG0180000605.01.T01 AT2G03550 35.391 243 130 8 50 267 49 289 6.60e-37 135
MsG0180000605.01.T01 AT5G62180 38.547 179 100 4 57 226 62 239 3.58e-35 131
MsG0180000605.01.T01 AT1G19190 33.333 249 130 9 50 267 49 292 7.68e-35 130
MsG0180000605.01.T01 AT1G47480 34.694 245 123 10 50 266 52 287 3.30e-34 128
MsG0180000605.01.T01 AT3G63010 40.936 171 89 5 65 231 102 264 7.72e-33 125
MsG0180000605.01.T01 AT3G48690 38.857 175 94 6 57 220 56 228 3.95e-31 120
MsG0180000605.01.T01 AT2G45600 35.484 186 108 5 57 231 53 237 1.25e-30 119
MsG0180000605.01.T01 AT5G23530 39.130 161 94 3 57 215 76 234 8.82e-30 117
MsG0180000605.01.T01 AT3G48700 35.193 233 115 10 69 267 74 304 1.52e-29 116
MsG0180000605.01.T01 AT1G49640 37.580 157 89 5 57 207 57 210 2.93e-29 115
MsG0180000605.01.T01 AT1G49660 39.264 163 89 5 50 203 49 210 9.80e-29 114
MsG0180000605.01.T01 AT5G06570 34.855 241 124 7 57 265 78 317 1.49e-28 114
MsG0180000605.01.T01 AT5G06570 34.855 241 124 7 57 265 78 317 1.49e-28 114
MsG0180000605.01.T01 AT5G06570 34.855 241 124 7 57 265 63 302 1.95e-28 113
MsG0180000605.01.T01 AT5G06570 34.855 241 124 7 57 265 63 302 1.95e-28 113
MsG0180000605.01.T01 AT5G27320 36.782 174 97 5 63 231 97 262 3.40e-27 110
MsG0180000605.01.T01 AT1G49650 32.479 234 126 7 50 253 105 336 4.63e-26 107
MsG0180000605.01.T01 AT2G45610 32.620 187 113 5 57 231 62 247 1.39e-25 105
MsG0180000605.01.T01 AT3G05120 34.911 169 98 4 67 231 104 264 7.93e-25 103

Find 75 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTTATTCATCCTTATTT+TGG 0.102644 1:+8579642 MsG0180000605.01.T01:CDS
CATAGGGTCTGTTTGGAATT+TGG 0.133447 1:+8583226 MsG0180000605.01.T01:CDS
TTCTAAAGCCAGAGCTTCTT+CGG 0.290682 1:+8584035 MsG0180000605.01.T01:CDS
ACTTTAGCTCCAACTGAATC+AGG 0.327244 1:-8583047 None:intergenic
TTATTCTCTCTGTTGATTAC+CGG 0.342457 1:+8579403 MsG0180000605.01.T01:CDS
GTTAAAGCTATTCAAAATGA+TGG 0.358106 1:+8579591 MsG0180000605.01.T01:CDS
TTTGATTCGTTGCAGATAAT+GGG 0.364177 1:+8582961 MsG0180000605.01.T01:intron
AAATCGCGGTTTGAATCTTC+AGG 0.370683 1:-8579750 None:intergenic
CCCCTCTTAGTTTATTTCCA+TGG 0.373291 1:+8579300 MsG0180000605.01.T01:CDS
CGCTCTATCCACTGAGCTAC+AGG 0.375810 1:-8578515 None:intergenic
TGAGAATGAATGATATGTTT+TGG 0.383752 1:+8579715 MsG0180000605.01.T01:CDS
TCTAAAGCCAGAGCTTCTTC+GGG 0.401740 1:+8584036 MsG0180000605.01.T01:CDS
TTTGTCCTGTGAAGATTAAA+GGG 0.411158 1:+8579616 MsG0180000605.01.T01:CDS
ATTGTTACTCATCACTTGAA+TGG 0.418250 1:+8579463 MsG0180000605.01.T01:CDS
TAACAATCTTCATAAGCAAT+TGG 0.428789 1:-8579447 None:intergenic
TTTCTATCTGGTGATAGTGC+TGG 0.428802 1:+8579543 MsG0180000605.01.T01:CDS
GTAAACACATAGGGTCTGTT+TGG 0.431054 1:+8583219 MsG0180000605.01.T01:CDS
GACGATGCTCCGGTGCTAAC+CGG 0.436384 1:-8579422 None:intergenic
TATGTTGGGATCCACAGTTC+AGG 0.443874 1:+8583998 MsG0180000605.01.T01:CDS
TTAGTTTATTTCCATGGTGG+TGG 0.445273 1:+8579306 MsG0180000605.01.T01:CDS
GGAATTTGGATTGGTTTATG+AGG 0.447452 1:+8583240 MsG0180000605.01.T01:CDS
GTAATCAACAGAGAGAATAA+TGG 0.454376 1:-8579400 None:intergenic
GGTCTGTTTGGAATTTGGAT+TGG 0.458220 1:+8583231 MsG0180000605.01.T01:CDS
GCTGAATTTGTGAAGAAGAA+AGG 0.459694 1:+8579886 MsG0180000605.01.T01:CDS
CTGAATTTGTGAAGAAGAAA+GGG 0.461925 1:+8579887 MsG0180000605.01.T01:CDS
TCAGTTGGAGCTAAAGTTAA+CGG 0.471645 1:+8583053 MsG0180000605.01.T01:CDS
ACAATAGCCCGAAGAAGCTC+TGG 0.478513 1:-8584043 None:intergenic
TTAAAGCTATTCAAAATGAT+GGG 0.483330 1:+8579592 MsG0180000605.01.T01:CDS
CACCATGGAAATAAACTAAG+AGG 0.485441 1:-8579302 None:intergenic
TACTCATCACTTGAATGGCT+TGG 0.489977 1:+8579468 MsG0180000605.01.T01:CDS
GAGAAAGAGATGGAGGAAGA+AGG 0.491269 1:+8579681 MsG0180000605.01.T01:CDS
GATGGAGGAAGAAGGTGTTG+AGG 0.494479 1:+8579689 MsG0180000605.01.T01:CDS
AGAGCTTCTTCGGGCTATTG+TGG 0.503644 1:+8584045 MsG0180000605.01.T01:CDS
TTTGTTTGTTGCGAGAAGAA+AGG 0.507158 1:+8577890 MsG0180000605.01.T01:CDS
AAATCAGCATGTCGTAGAAA+CGG 0.511068 1:-8579510 None:intergenic
GAAGAAGAAAGGGGTGAAAG+AGG 0.514412 1:+8579897 MsG0180000605.01.T01:CDS
AAGGACTGAGAAAGAGATGG+AGG 0.522958 1:+8579674 MsG0180000605.01.T01:CDS
GATGAGAGTGGAAGAAGGAG+AGG 0.524557 1:+8577863 None:intergenic
GAACCTACGACTTTCTGCTT+AGG 0.525829 1:-8578545 None:intergenic
ATTGGTTCCACAACATGGCT+TGG 0.527238 1:+8579336 MsG0180000605.01.T01:CDS
CTTCGGGCTATTGTGGACTC+AGG 0.529197 1:+8584052 MsG0180000605.01.T01:CDS
AGCATGTCGTAGAAACGGTT+CGG 0.530176 1:-8579505 None:intergenic
TTTGCATTGGTTCCACAACA+TGG 0.530946 1:+8579331 MsG0180000605.01.T01:CDS
CTCTTAGTTTATTTCCATGG+TGG 0.536865 1:+8579303 MsG0180000605.01.T01:CDS
GGAAATAAACTAAGAGGGGT+AGG 0.536872 1:-8579296 None:intergenic
AGATGAATCGTAAACACATA+GGG 0.542924 1:+8583210 MsG0180000605.01.T01:intron
GAAAAGGACTGAGAAAGAGA+TGG 0.546508 1:+8579671 MsG0180000605.01.T01:CDS
ATAACCCCTTTAATCTTCAC+AGG 0.546628 1:-8579621 None:intergenic
CGACTGATGAGAGTGGAAGA+AGG 0.555398 1:+8577858 None:intergenic
GCAATTGGAAGACGATGCTC+CGG 0.555820 1:-8579432 None:intergenic
AAGATGAATCGTAAACACAT+AGG 0.556526 1:+8583209 MsG0180000605.01.T01:intron
CTTGGTTACAACAACTTCCT+CGG 0.558449 1:+8579354 MsG0180000605.01.T01:CDS
GGATTCGAGCATCCCTCTGA+AGG 0.563726 1:+8584073 MsG0180000605.01.T01:CDS
TGTTGATTACCGGTTAGCAC+CGG 0.565869 1:+8579413 MsG0180000605.01.T01:CDS
GAGAAAGCACCTGATTCAGT+TGG 0.569621 1:+8583038 MsG0180000605.01.T01:CDS
CTATCTGGTGATAGTGCTGG+TGG 0.575168 1:+8579546 MsG0180000605.01.T01:CDS
AAGAGCTTCTTGATTACGAG+AGG 0.577462 1:+8583010 MsG0180000605.01.T01:CDS
ACCATGGAAATAAACTAAGA+GGG 0.579639 1:-8579301 None:intergenic
GCAGATAATTTGCCTTCAGA+GGG 0.582377 1:-8584085 None:intergenic
AGCTTCTTGATTACGAGAGG+AGG 0.584142 1:+8583013 MsG0180000605.01.T01:CDS
GCAGATAATGGGTGAAACAA+AGG 0.590625 1:+8582972 MsG0180000605.01.T01:intron
TTTCCTAAGCAGAAAGTCGT+AGG 0.598643 1:+8578542 MsG0180000605.01.T01:CDS
GGTAAAGATAACATAACTTG+CGG 0.638177 1:+8578473 MsG0180000605.01.T01:CDS
AGTCTCTGAATCCTGAACTG+TGG 0.639489 1:-8584009 None:intergenic
GTTGTAACCAAGCCATGTTG+TGG 0.646578 1:-8579343 None:intergenic
TTGTCCTGTGAAGATTAAAG+GGG 0.648557 1:+8579617 MsG0180000605.01.T01:CDS
GAAAGAGGTGAATGTTGTTG+AGG 0.650538 1:+8579912 MsG0180000605.01.T01:CDS
GTCAAGCGCCTGTAGCTCAG+TGG 0.661130 1:+8578507 MsG0180000605.01.T01:CDS
CAATGCAAAAGCCACCACCA+TGG 0.665433 1:-8579317 None:intergenic
CCATGGAAATAAACTAAGAG+GGG 0.668248 1:-8579300 None:intergenic
AATTACAACCGATAAAATCG+CGG 0.674514 1:-8579764 None:intergenic
TGAATTTGTGAAGAAGAAAG+GGG 0.739375 1:+8579888 MsG0180000605.01.T01:CDS
ATGTTGCCGACTGATGAGAG+TGG 0.750190 1:+8577851 None:intergenic
AACAAAGGAAGAAACATACG+AGG 0.752410 1:+8582987 MsG0180000605.01.T01:CDS
ATGTGACAGAGAAATCTCCG+AGG 0.764252 1:-8579371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTGATATTTGATAT+TGG + Chr1:8581480-8581499 MsG0180000605.01.T01:intron 10.0%
!! ATGCATATAAAAAAAAAATT+AGG + Chr1:8578056-8578075 MsG0180000605.01.T01:intron 10.0%
!! CATTTAATAAAGAAAAATAA+CGG - Chr1:8583796-8583815 None:intergenic 10.0%
!! GTAAAAAAAATAATATTTCT+TGG - Chr1:8578185-8578204 None:intergenic 10.0%
!! TAAACAAAATTTCTTAATTA+CGG + Chr1:8581447-8581466 MsG0180000605.01.T01:intron 10.0%
!!! CATTTTTTTTTTTTTTTGAA+AGG + Chr1:8580255-8580274 MsG0180000605.01.T01:intron 10.0%
!!! TTTTCTTATTAAATGTTTTT+GGG + Chr1:8583755-8583774 MsG0180000605.01.T01:intron 10.0%
!!! TTTTTATATGCATAAATATA+AGG - Chr1:8578049-8578068 None:intergenic 10.0%
!!! TTTTTCTTATTAAATGTTTT+TGG + Chr1:8583754-8583773 MsG0180000605.01.T01:intron 10.0%
!! AAATTATTTAAACTTGATGT+AGG + Chr1:8580507-8580526 MsG0180000605.01.T01:intron 15.0%
!! ATAAACTTAAATGATCTAAT+TGG + Chr1:8582420-8582439 MsG0180000605.01.T01:intron 15.0%
!! ATATAAAATTCAAATCTACA+TGG - Chr1:8580333-8580352 None:intergenic 15.0%
!! ATTTAATTGTAACAATTTGA+AGG - Chr1:8582402-8582421 None:intergenic 15.0%
!! GTTACAATTAAATAACTTAA+AGG - Chr1:8582289-8582308 None:intergenic 15.0%
!! TCTTAAAAATGTAAGTTATT+TGG - Chr1:8582371-8582390 None:intergenic 15.0%
!! TTAAATAACTTAAATGTAAG+TGG + Chr1:8582510-8582529 MsG0180000605.01.T01:intron 15.0%
!!! AAAATGGATATTTTAAATCT+AGG + Chr1:8580355-8580374 MsG0180000605.01.T01:intron 15.0%
!!! AGATTTGTTAATTTGAAATA+TGG + Chr1:8583147-8583166 MsG0180000605.01.T01:intron 15.0%
!!! ATTGATTAATTTGAAAGTTT+GGG + Chr1:8583417-8583436 MsG0180000605.01.T01:intron 15.0%
!!! CTAATGCATATTTTTATTTT+AGG - Chr1:8580155-8580174 None:intergenic 15.0%
!!! CTTTTTTATTTTTACTAAAG+TGG - Chr1:8582610-8582629 None:intergenic 15.0%
!!! TTTCTTATTAAATGTTTTTG+GGG + Chr1:8583756-8583775 MsG0180000605.01.T01:intron 15.0%
!!! TTTGAATTTTATATGCAAAA+TGG + Chr1:8580339-8580358 MsG0180000605.01.T01:intron 15.0%
!!! TTTGATTAATTTGAAAGTTT+GGG + Chr1:8583311-8583330 MsG0180000605.01.T01:intron 15.0%
!!! TTTTATGTTGAATTTTGTAT+AGG + Chr1:8583335-8583354 MsG0180000605.01.T01:intron 15.0%
!!! TTTTATGTTGAATTTTGTAT+TGG + Chr1:8583335-8583354 MsG0180000605.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTGAAAGGA+CGG + Chr1:8580259-8580278 MsG0180000605.01.T01:intron 15.0%
!! AAACTGAAAAAAGAATACTA+CGG - Chr1:8583734-8583753 None:intergenic 20.0%
!! ACTATGTTTATACTAATAGA+TGG - Chr1:8581080-8581099 None:intergenic 20.0%
!! AGAATAGAGTAAAAAATGTT+AGG - Chr1:8578660-8578679 None:intergenic 20.0%
!! AGAATAGAGTTAAAAATGTT+AGG - Chr1:8578624-8578643 None:intergenic 20.0%
!! AGATGAAAATTATGATACAA+AGG + Chr1:8581720-8581739 MsG0180000605.01.T01:intron 20.0%
!! ATATAATTAAATGGTGTAAG+TGG - Chr1:8582338-8582357 None:intergenic 20.0%
!! CAAAGAAAAATCAAAATTTG+GGG - Chr1:8582779-8582798 None:intergenic 20.0%
!! CTTATTGTTTAAATCATTGT+GGG - Chr1:8581942-8581961 None:intergenic 20.0%
!! GCAAAGAAAAATCAAAATTT+GGG - Chr1:8582780-8582799 None:intergenic 20.0%
!! GTTTGAACGATATAATTAAA+TGG - Chr1:8582347-8582366 None:intergenic 20.0%
!! TAATTACATTACATATCAAG+TGG - Chr1:8581420-8581439 None:intergenic 20.0%
!! TAATTCTCAAAATTCAAACT+GGG - Chr1:8582925-8582944 None:intergenic 20.0%
!! TCAAATTATGACGTAAATTA+AGG - Chr1:8581763-8581782 None:intergenic 20.0%
!! TCTTATTGTTTAAATCATTG+TGG - Chr1:8581943-8581962 None:intergenic 20.0%
!! TGCAAAGAAAAATCAAAATT+TGG - Chr1:8582781-8582800 None:intergenic 20.0%
!! TTAAAGCTATTCAAAATGAT+GGG + Chr1:8579592-8579611 MsG0180000605.01.T01:CDS 20.0%
!! TTGTAATCAGTTGATTATAA+TGG + Chr1:8580845-8580864 MsG0180000605.01.T01:intron 20.0%
!! TTTCGAGATATAAAAATGTT+TGG + Chr1:8581260-8581279 MsG0180000605.01.T01:intron 20.0%
!!! ACATTTTTATATCTCGAAAA+TGG - Chr1:8581259-8581278 None:intergenic 20.0%
!!! AGTTAAAGATTTTCATTTCA+AGG + Chr1:8581314-8581333 MsG0180000605.01.T01:intron 20.0%
!!! ATAACCTTTTGTTAAAAATG+GGG + Chr1:8580615-8580634 MsG0180000605.01.T01:intron 20.0%
!!! CATTTGAAGTTAAAAAGTTA+AGG - Chr1:8578925-8578944 None:intergenic 20.0%
!!! GATAACCTTTTGTTAAAAAT+GGG + Chr1:8580614-8580633 MsG0180000605.01.T01:intron 20.0%
!!! GATTGATTAATTTGAAAGTT+TGG + Chr1:8583416-8583435 MsG0180000605.01.T01:intron 20.0%
!!! GTTAAAGATTTTCATTTCAA+GGG + Chr1:8581315-8581334 MsG0180000605.01.T01:intron 20.0%
!!! GTTTGATTAATTTGAAAGTT+TGG + Chr1:8583310-8583329 MsG0180000605.01.T01:intron 20.0%
!!! TCTTATTGGTTTAAATCATT+GGG - Chr1:8581904-8581923 None:intergenic 20.0%
!!! TGATACGAAATAACTTTTAT+TGG - Chr1:8582259-8582278 None:intergenic 20.0%
!!! TGTGTTTTCATCAAATAATT+TGG - Chr1:8578417-8578436 None:intergenic 20.0%
!!! TTAAAGATTTTCATTTCAAG+GGG + Chr1:8581316-8581335 MsG0180000605.01.T01:intron 20.0%
!!! TTATCAAATGTTTTTCTATC+TGG + Chr1:8579531-8579550 MsG0180000605.01.T01:CDS 20.0%
! AAAAAAATTAGGCTAGAATC+TGG + Chr1:8578067-8578086 MsG0180000605.01.T01:intron 25.0%
! AAGTCTTAATTAATAACCCT+CGG + Chr1:8580221-8580240 MsG0180000605.01.T01:intron 25.0%
! AATTCTCAAAATTCAAACTG+GGG - Chr1:8582924-8582943 None:intergenic 25.0%
! AGAGATAAGATCATAATTGA+TGG + Chr1:8581542-8581561 MsG0180000605.01.T01:intron 25.0%
! AGTTAAAAATGTTAGGAGTT+AGG - Chr1:8578617-8578636 None:intergenic 25.0%
! ATACTAGTTCACAATTAAAC+TGG - Chr1:8580957-8580976 None:intergenic 25.0%
! ATATGCATAAATATAAGGCA+CGG - Chr1:8578044-8578063 None:intergenic 25.0%
! CTAATTCTCAAAATTCAAAC+TGG - Chr1:8582926-8582945 None:intergenic 25.0%
! CTTAAATGATCTAATTGGTA+CGG + Chr1:8582425-8582444 MsG0180000605.01.T01:intron 25.0%
! GAAAATTGAACTCATACAAA+AGG - Chr1:8581870-8581889 None:intergenic 25.0%
! GAAGGAAAGTTAAAAAGTTA+AGG - Chr1:8578705-8578724 None:intergenic 25.0%
! GTATCTGAATTATGAATTAG+AGG - Chr1:8579030-8579049 None:intergenic 25.0%
! GTTAAAGCTATTCAAAATGA+TGG + Chr1:8579591-8579610 MsG0180000605.01.T01:CDS 25.0%
! TAAAAATGTGATTCTTCTTC+TGG - Chr1:8581397-8581416 None:intergenic 25.0%
! TAACAATCTTCATAAGCAAT+TGG - Chr1:8579450-8579469 None:intergenic 25.0%
! TATACATAAGCTGAAAAACT+TGG - Chr1:8579001-8579020 None:intergenic 25.0%
! TATCTACTGAAACTATGTTT+GGG + Chr1:8583521-8583540 MsG0180000605.01.T01:intron 25.0%
! TCTTTAACTAGTTACGATAA+TGG - Chr1:8581303-8581322 None:intergenic 25.0%
! TGAAAATTATGATACAAAGG+AGG + Chr1:8581723-8581742 MsG0180000605.01.T01:intron 25.0%
! TGGTACGGAAAAATATTAAA+GGG + Chr1:8582440-8582459 MsG0180000605.01.T01:intron 25.0%
! TTAATACGAGTTAAGTGATT+TGG + Chr1:8581042-8581061 MsG0180000605.01.T01:intron 25.0%
! TTACCAATCAAATACCTTAT+GGG + Chr1:8580781-8580800 MsG0180000605.01.T01:intron 25.0%
! TTATCTACTGAAACTATGTT+TGG + Chr1:8583520-8583539 MsG0180000605.01.T01:intron 25.0%
! TTCATGTTGCTAGTTAAATT+CGG + Chr1:8580291-8580310 MsG0180000605.01.T01:intron 25.0%
! TTCATTGCATATCTGATTAA+TGG + Chr1:8580545-8580564 MsG0180000605.01.T01:intron 25.0%
! TTGGTACGGAAAAATATTAA+AGG + Chr1:8582439-8582458 MsG0180000605.01.T01:intron 25.0%
!! ACGTCATAATTTGAAATATG+AGG + Chr1:8581769-8581788 MsG0180000605.01.T01:intron 25.0%
!! ATCAAATAATTTGGTTCAAG+TGG - Chr1:8578408-8578427 None:intergenic 25.0%
!! CGATAACCTTTTGTTAAAAA+TGG + Chr1:8580613-8580632 MsG0180000605.01.T01:intron 25.0%
!! CTTTGAACAATGATACTTTT+TGG - Chr1:8578156-8578175 None:intergenic 25.0%
!! TAACCTTTTGTTAAAAATGG+GGG + Chr1:8580616-8580635 MsG0180000605.01.T01:intron 25.0%
!! TGAGAATGAATGATATGTTT+TGG + Chr1:8579715-8579734 MsG0180000605.01.T01:CDS 25.0%
!! TTTAAGCAAAAGTTTTTGCA+TGG + Chr1:8581184-8581203 MsG0180000605.01.T01:intron 25.0%
!!! AACTGTGAAAGTGTTTTTAT+AGG - Chr1:8582735-8582754 None:intergenic 25.0%
!!! AGATTTTTGGTTGGATTATT+TGG - Chr1:8579276-8579295 None:intergenic 25.0%
!!! ATGCTTATTCATCCTTATTT+TGG + Chr1:8579642-8579661 MsG0180000605.01.T01:CDS 25.0%
!!! ATGCTTATTTTTGCTTTTTC+AGG + Chr1:8583972-8583991 MsG0180000605.01.T01:intron 25.0%
!!! CAGTTTGAATTTTGAGAATT+AGG + Chr1:8582924-8582943 MsG0180000605.01.T01:intron 25.0%
!!! CTCTTATTGGTTTAAATCAT+TGG - Chr1:8581905-8581924 None:intergenic 25.0%
!!! CTTATTGGTTTAAATCATTG+GGG - Chr1:8581903-8581922 None:intergenic 25.0%
!!! GAAGTGTTTTGATTAATATG+AGG + Chr1:8581356-8581375 MsG0180000605.01.T01:intron 25.0%
!!! GTCTTTTGATTTGTATTTGT+TGG - Chr1:8579209-8579228 None:intergenic 25.0%
!!! TGCTTATTCATCCTTATTTT+GGG + Chr1:8579643-8579662 MsG0180000605.01.T01:CDS 25.0%
!!! TGCTTATTTTTGCTTTTTCA+GGG + Chr1:8583973-8583992 MsG0180000605.01.T01:intron 25.0%
!!! TTTTAACTTCAAATGCTACA+GGG + Chr1:8578930-8578949 MsG0180000605.01.T01:intron 25.0%
!!! TTTTTAACTTCAAATGCTAC+AGG + Chr1:8578929-8578948 MsG0180000605.01.T01:intron 25.0%
AAAAATGTTAGGAGTTAGGA+AGG - Chr1:8578613-8578632 None:intergenic 30.0%
AAAACTTAACATAGTGAGTG+TGG + Chr1:8582072-8582091 MsG0180000605.01.T01:intron 30.0%
AAAATGAAATGTAAAGACCG+AGG - Chr1:8580241-8580260 None:intergenic 30.0%
AAATGAAATGTAAAGACCGA+GGG - Chr1:8580240-8580259 None:intergenic 30.0%
AACCATCATTCTACTAATGA+GGG - Chr1:8580185-8580204 None:intergenic 30.0%
AAGACTTAAGAGATTCTACA+TGG - Chr1:8580208-8580227 None:intergenic 30.0%
AAGATGAATCGTAAACACAT+AGG + Chr1:8583209-8583228 MsG0180000605.01.T01:intron 30.0%
AAGGATTGTGATGTTTGTAT+TGG + Chr1:8580084-8580103 MsG0180000605.01.T01:intron 30.0%
AATAAAAAAGATGACCTCGT+AGG + Chr1:8582620-8582639 MsG0180000605.01.T01:intron 30.0%
AATGAAGAATGAGCTTAAAG+TGG + Chr1:8581590-8581609 MsG0180000605.01.T01:intron 30.0%
AATTACAACCGATAAAATCG+CGG - Chr1:8579767-8579786 None:intergenic 30.0%
AATTGAACTCATACAAAAGG+TGG - Chr1:8581867-8581886 None:intergenic 30.0%
ACCATGGAAATAAACTAAGA+GGG - Chr1:8579304-8579323 None:intergenic 30.0%
AGATGAATCGTAAACACATA+GGG + Chr1:8583210-8583229 MsG0180000605.01.T01:intron 30.0%
AGCTTAAATATAACGTTGAG+AGG - Chr1:8581624-8581643 None:intergenic 30.0%
ATAAAAAAGATGACCTCGTA+GGG + Chr1:8582621-8582640 MsG0180000605.01.T01:intron 30.0%
ATAGTACAAAGAAGAGGAAA+TGG - Chr1:8580997-8581016 None:intergenic 30.0%
ATTGTTACTCATCACTTGAA+TGG + Chr1:8579463-8579482 MsG0180000605.01.T01:CDS 30.0%
CAACACAACAAACAAGAAAA+TGG - Chr1:8583886-8583905 None:intergenic 30.0%
CAGTTGAGTCATAATATTTG+AGG + Chr1:8580672-8580691 MsG0180000605.01.T01:intron 30.0%
CATATTGAAAGAAGAGGAAA+TGG - Chr1:8581111-8581130 None:intergenic 30.0%
CTCTTCTTTCAATATGTGTT+GGG + Chr1:8581115-8581134 MsG0180000605.01.T01:intron 30.0%
CTGAATTTGTGAAGAAGAAA+GGG + Chr1:8579887-8579906 MsG0180000605.01.T01:CDS 30.0%
GAAAAGACTTGAAGAAATTC+TGG - Chr1:8579130-8579149 None:intergenic 30.0%
GATATTGGATTCAAGTAAAG+AGG + Chr1:8581495-8581514 MsG0180000605.01.T01:intron 30.0%
GCTAAAATAGTACAAAGAAG+AGG - Chr1:8581003-8581022 None:intergenic 30.0%
GCTTAAATATAACGTTGAGA+GGG - Chr1:8581623-8581642 None:intergenic 30.0%
GGTAAAGATAACATAACTTG+CGG + Chr1:8578473-8578492 MsG0180000605.01.T01:CDS 30.0%
GTAATCAACAGAGAGAATAA+TGG - Chr1:8579403-8579422 None:intergenic 30.0%
GTGTAGATTCATACTAAGTT+AGG + Chr1:8580700-8580719 MsG0180000605.01.T01:intron 30.0%
GTTAAACACTCAACTCTAAA+AGG + Chr1:8580646-8580665 MsG0180000605.01.T01:intron 30.0%
GTTACCAATCAAATACCTTA+TGG + Chr1:8580780-8580799 MsG0180000605.01.T01:intron 30.0%
TAATGTCAAATAGTAGTCGA+TGG - Chr1:8581657-8581676 None:intergenic 30.0%
TATGCATAAATATAAGGCAC+GGG - Chr1:8578043-8578062 None:intergenic 30.0%
TCATTTGTACTCAAATATCC+TGG - Chr1:8580759-8580778 None:intergenic 30.0%
TGAATTTGTGAAGAAGAAAG+GGG + Chr1:8579888-8579907 MsG0180000605.01.T01:CDS 30.0%
TTAAGTCCTCAATTGTCTTT+AGG + Chr1:8580869-8580888 MsG0180000605.01.T01:intron 30.0%
TTATATCTCGAAAATGGTGA+TGG - Chr1:8581253-8581272 None:intergenic 30.0%
TTATTATGATCTCGAAGATG+AGG + Chr1:8581674-8581693 MsG0180000605.01.T01:intron 30.0%
TTGTTGGATGAATCTAATGA+GGG - Chr1:8579193-8579212 None:intergenic 30.0%
TTTGTCCTGTGAAGATTAAA+GGG + Chr1:8579616-8579635 MsG0180000605.01.T01:CDS 30.0%
TTTGTTGGATGAATCTAATG+AGG - Chr1:8579194-8579213 None:intergenic 30.0%
! GTTGGTCAATGTTTTCATTT+TGG + Chr1:8583902-8583921 MsG0180000605.01.T01:intron 30.0%
! TTATTCTCTCTGTTGATTAC+CGG + Chr1:8579403-8579422 MsG0180000605.01.T01:CDS 30.0%
! TTTCCCATAAGGTATTTGAT+TGG - Chr1:8580787-8580806 None:intergenic 30.0%
! TTTCTTCAAGTCTTTTCAGA+TGG + Chr1:8579133-8579152 MsG0180000605.01.T01:intron 30.0%
! TTTGATTCGTTGCAGATAAT+GGG + Chr1:8582961-8582980 MsG0180000605.01.T01:intron 30.0%
! TTTTCTTTGCAGAATCTCTT+CGG + Chr1:8582790-8582809 MsG0180000605.01.T01:intron 30.0%
! TTTTGTCCTGTGAAGATTAA+AGG + Chr1:8579615-8579634 MsG0180000605.01.T01:CDS 30.0%
!! ATTGATGGTGAAATAGAAAG+AGG + Chr1:8581557-8581576 MsG0180000605.01.T01:intron 30.0%
!! TTACCCCCATTTTTAACAAA+AGG - Chr1:8580622-8580641 None:intergenic 30.0%
!!! CATTTTCTTGTTTGTTGTGT+TGG + Chr1:8583884-8583903 MsG0180000605.01.T01:intron 30.0%
!!! GAAACGAGGCTTTAATTTTT+TGG + Chr1:8580121-8580140 MsG0180000605.01.T01:intron 30.0%
!!! GCTTATTTTTGCTTTTTCAG+GGG + Chr1:8583974-8583993 MsG0180000605.01.T01:intron 30.0%
!!! TTCTGTTTTGATGAAGTTAG+AGG + Chr1:8583848-8583867 MsG0180000605.01.T01:intron 30.0%
AAATCAGCATGTCGTAGAAA+CGG - Chr1:8579513-8579532 None:intergenic 35.0%
AAATCTAGCTATAGTCAGTG+AGG + Chr1:8580804-8580823 MsG0180000605.01.T01:intron 35.0%
AACAAAGGAAGAAACATACG+AGG + Chr1:8582987-8583006 MsG0180000605.01.T01:CDS 35.0%
AACGCAACGCATATATTTGA+CGG + Chr1:8582540-8582559 MsG0180000605.01.T01:intron 35.0%
ACATAAGCTGAAAAACTTGG+TGG - Chr1:8578998-8579017 None:intergenic 35.0%
AGACTATTGTATGCTGTGTT+AGG + Chr1:8583288-8583307 MsG0180000605.01.T01:intron 35.0%
ATAACCCCTTTAATCTTCAC+AGG - Chr1:8579624-8579643 None:intergenic 35.0%
ATGGTGAAATAGAAAGAGGT+GGG + Chr1:8581561-8581580 MsG0180000605.01.T01:intron 35.0%
ATTCCACCTAAAGACAATTG+AGG - Chr1:8580878-8580897 None:intergenic 35.0%
CACAAAACTGAAATGGTTCT+AGG - Chr1:8579066-8579085 None:intergenic 35.0%
CACCATGGAAATAAACTAAG+AGG - Chr1:8579305-8579324 None:intergenic 35.0%
CCAACACATATTGAAAGAAG+AGG - Chr1:8581117-8581136 None:intergenic 35.0%
CCATGGAAATAAACTAAGAG+GGG - Chr1:8579303-8579322 None:intergenic 35.0%
CCTCTTCTTTCAATATGTGT+TGG + Chr1:8581114-8581133 MsG0180000605.01.T01:intron 35.0%
CGTAATTGATACATGAAACG+AGG + Chr1:8580107-8580126 MsG0180000605.01.T01:intron 35.0%
CTAAAGTTAACGGTGAATCT+GGG + Chr1:8583063-8583082 MsG0180000605.01.T01:intron 35.0%
CTACACTTTCACTCTCTTAT+TGG - Chr1:8581918-8581937 None:intergenic 35.0%
CTACTTGCACAAAACTGAAA+TGG - Chr1:8579073-8579092 None:intergenic 35.0%
CTATAGCTAGATTTCCCATA+AGG - Chr1:8580798-8580817 None:intergenic 35.0%
CTCAGGAATTCACTGTTTAT+TGG + Chr1:8581823-8581842 MsG0180000605.01.T01:intron 35.0%
CTCTTAGTTTATTTCCATGG+TGG + Chr1:8579303-8579322 MsG0180000605.01.T01:CDS 35.0%
CTTACATCTCAACTGAACTT+CGG - Chr1:8578310-8578329 None:intergenic 35.0%
GAACCATCATTCTACTAATG+AGG - Chr1:8580186-8580205 None:intergenic 35.0%
GCAAAGACACAAGAAATAGA+TGG - Chr1:8581225-8581244 None:intergenic 35.0%
GCTGAATTTGTGAAGAAGAA+AGG + Chr1:8579886-8579905 MsG0180000605.01.T01:CDS 35.0%
GGATTCAAGTAAAGAGGAAA+AGG + Chr1:8581501-8581520 MsG0180000605.01.T01:intron 35.0%
TCAGTTGGAGCTAAAGTTAA+CGG + Chr1:8583053-8583072 MsG0180000605.01.T01:CDS 35.0%
TCTCTACTCTCACAAACAAT+CGG - Chr1:8577953-8577972 None:intergenic 35.0%
TGAAATAAGCCAATCCAAAC+AGG - Chr1:8583498-8583517 None:intergenic 35.0%
TGCAAAAACAACAGTCAGAA+GGG + Chr1:8578452-8578471 MsG0180000605.01.T01:intron 35.0%
TTAGTTTATTTCCATGGTGG+TGG + Chr1:8579306-8579325 MsG0180000605.01.T01:CDS 35.0%
TTGCAAAAACAACAGTCAGA+AGG + Chr1:8578451-8578470 MsG0180000605.01.T01:intron 35.0%
TTGTCCTGTGAAGATTAAAG+GGG + Chr1:8579617-8579636 MsG0180000605.01.T01:CDS 35.0%
! CTTTTCTCACTCCCAAAATA+AGG - Chr1:8579657-8579676 None:intergenic 35.0%
! GATTCAAACCGCGATTTTAT+CGG + Chr1:8579756-8579775 MsG0180000605.01.T01:CDS 35.0%
! GGTCAATGTTTTCATTTTGG+TGG + Chr1:8583905-8583924 MsG0180000605.01.T01:intron 35.0%
! GTTTGATTCGTTGCAGATAA+TGG + Chr1:8582960-8582979 MsG0180000605.01.T01:intron 35.0%
! TTTGTTTGTTGCGAGAAGAA+AGG + Chr1:8577890-8577909 MsG0180000605.01.T01:CDS 35.0%
!! AAAACTGAAATGGTTCTAGG+TGG - Chr1:8579063-8579082 None:intergenic 35.0%
!! ATTTGTAGGTCTTGTTAGGT+TGG - Chr1:8578970-8578989 None:intergenic 35.0%
!! GGAATTTGGATTGGTTTATG+AGG + Chr1:8583240-8583259 MsG0180000605.01.T01:CDS 35.0%
!! TGCAATTTGTAGGTCTTGTT+AGG - Chr1:8578974-8578993 None:intergenic 35.0%
!!! CTTATTTTGGGAGTGAGAAA+AGG + Chr1:8579655-8579674 MsG0180000605.01.T01:CDS 35.0%
!!! CTTTTTTTTCCCTTGCGAAT+CGG - Chr1:8578277-8578296 None:intergenic 35.0%
!!! GGGAAGATTTTTTGAAGGAA+AGG + Chr1:8579852-8579871 MsG0180000605.01.T01:intron 35.0%
!!! TTGCTGGGAAGATTTTTTGA+AGG + Chr1:8579847-8579866 MsG0180000605.01.T01:intron 35.0%
AAATCGCGGTTTGAATCTTC+AGG - Chr1:8579753-8579772 None:intergenic 40.0%
AACCTAGTTGCTTCAGATTC+AGG - Chr1:8579973-8579992 None:intergenic 40.0%
AAGAATACTACGGCTCTGTT+TGG - Chr1:8583724-8583743 None:intergenic 40.0%
AAGAGCTTCTTGATTACGAG+AGG + Chr1:8583010-8583029 MsG0180000605.01.T01:CDS 40.0%
AATGAAGAGTCTTCCTGTGA+TGG - Chr1:8579253-8579272 None:intergenic 40.0%
AATGAATACCTGCGAGAAGA+AGG - Chr1:8582862-8582881 None:intergenic 40.0%
AATTAGGCTAGAATCTGGTG+TGG + Chr1:8578072-8578091 MsG0180000605.01.T01:intron 40.0%
ACACTTCAACTCCAATCACT+TGG - Chr1:8581343-8581362 None:intergenic 40.0%
ACTTACACGTAAAGCCTGTT+TGG + Chr1:8583481-8583500 MsG0180000605.01.T01:intron 40.0%
AGAATACTACGGCTCTGTTT+GGG - Chr1:8583723-8583742 None:intergenic 40.0%
AGCTCATACATAAGCAGCTT+AGG + Chr1:8583667-8583686 MsG0180000605.01.T01:intron 40.0%
AGGGTTTGTACTTTGTACGT+GGG + Chr1:8582640-8582659 MsG0180000605.01.T01:intron 40.0%
AGTCCTCAATTGTCTTTAGG+TGG + Chr1:8580872-8580891 MsG0180000605.01.T01:intron 40.0%
ATGAAGAGTCTTCCTGTGAT+GGG - Chr1:8579252-8579271 None:intergenic 40.0%
ATGTAGAGTGAAACATGGTG+TGG - Chr1:8578104-8578123 None:intergenic 40.0%
CACCCTCATTAGTAGAATGA+TGG + Chr1:8580180-8580199 MsG0180000605.01.T01:intron 40.0%
CATAAATATAAGGCACGGGA+AGG - Chr1:8578039-8578058 None:intergenic 40.0%
CATCATTCTACTAATGAGGG+TGG - Chr1:8580182-8580201 None:intergenic 40.0%
CATGTGACAATAAGAGCTTG+TGG - Chr1:8582049-8582068 None:intergenic 40.0%
CCCCTCTTAGTTTATTTCCA+TGG + Chr1:8579300-8579319 MsG0180000605.01.T01:CDS 40.0%
CTGTTGAGGTTTATGTTGCT+GGG + Chr1:8579832-8579851 MsG0180000605.01.T01:intron 40.0%
CTTGGTTACAACAACTTCCT+CGG + Chr1:8579354-8579373 MsG0180000605.01.T01:CDS 40.0%
GAAAAGGACTGAGAAAGAGA+TGG + Chr1:8579671-8579690 MsG0180000605.01.T01:CDS 40.0%
GAAAGAGGTGAATGTTGTTG+AGG + Chr1:8579912-8579931 MsG0180000605.01.T01:CDS 40.0%
GATGGTGAAATAGAAAGAGG+TGG + Chr1:8581560-8581579 MsG0180000605.01.T01:intron 40.0%
GCTAAAGTTAACGGTGAATC+TGG + Chr1:8583062-8583081 MsG0180000605.01.T01:intron 40.0%
GGAAATAAACTAAGAGGGGT+AGG - Chr1:8579299-8579318 None:intergenic 40.0%
GTAAACACATAGGGTCTGTT+TGG + Chr1:8583219-8583238 MsG0180000605.01.T01:CDS 40.0%
GTGGTGCAAATACATGTACT+AGG + Chr1:8582091-8582110 MsG0180000605.01.T01:intron 40.0%
TACAAAGTACAAACCCTACG+AGG - Chr1:8582637-8582656 None:intergenic 40.0%
TACTCATCACTTGAATGGCT+TGG + Chr1:8579468-8579487 MsG0180000605.01.T01:CDS 40.0%
TAGGGTTTGTACTTTGTACG+TGG + Chr1:8582639-8582658 MsG0180000605.01.T01:intron 40.0%
TAGGTGGAATCTTTCTTCAG+CGG + Chr1:8580888-8580907 MsG0180000605.01.T01:intron 40.0%
TGAAATAGAAAGAGGTGGGA+GGG + Chr1:8581565-8581584 MsG0180000605.01.T01:intron 40.0%
TGAGAAGTGAAGGACTGTTA+GGG - Chr1:8582825-8582844 None:intergenic 40.0%
TGAGGCATAACATACATCGT+TGG + Chr1:8580822-8580841 MsG0180000605.01.T01:intron 40.0%
TGTTTGTGAGAGTAGAGAAG+AGG + Chr1:8577955-8577974 MsG0180000605.01.T01:intron 40.0%
TTCTGGTGCTTCTGCTATTA+AGG - Chr1:8579113-8579132 None:intergenic 40.0%
TTGAGAAGTGAAGGACTGTT+AGG - Chr1:8582826-8582845 None:intergenic 40.0%
TTGGATGAATCTAATGAGGG+TGG - Chr1:8579190-8579209 None:intergenic 40.0%
TTTCCTAAGCAGAAAGTCGT+AGG + Chr1:8578542-8578561 MsG0180000605.01.T01:CDS 40.0%
! ACTTGGTGGTTGCAATTTGT+AGG - Chr1:8578984-8579003 None:intergenic 40.0%
! ACTTTAGCTCCAACTGAATC+AGG - Chr1:8583050-8583069 None:intergenic 40.0%
! ATCCTGAATCTGAAGCAACT+AGG + Chr1:8579968-8579987 MsG0180000605.01.T01:intron 40.0%
! CATAGGGTCTGTTTGGAATT+TGG + Chr1:8583226-8583245 MsG0180000605.01.T01:CDS 40.0%
! CTCTCAGATTTGCTTATGTC+AGG - Chr1:8583378-8583397 None:intergenic 40.0%
! GGTCTGTTTGGAATTTGGAT+TGG + Chr1:8583231-8583250 MsG0180000605.01.T01:CDS 40.0%
! GTTAACATTCCGATTCGCAA+GGG + Chr1:8578265-8578284 MsG0180000605.01.T01:intron 40.0%
! TAAGAGGGGTAGGAGATTTT+TGG - Chr1:8579289-8579308 None:intergenic 40.0%
! TCTTCATGAACTGACTCATC+TGG - Chr1:8580005-8580024 None:intergenic 40.0%
! TGTTAACATTCCGATTCGCA+AGG + Chr1:8578264-8578283 MsG0180000605.01.T01:intron 40.0%
! TTTCTATCTGGTGATAGTGC+TGG + Chr1:8579543-8579562 MsG0180000605.01.T01:CDS 40.0%
!! AGAGTATTGTATGCTGTGCT+AGG + Chr1:8583394-8583413 MsG0180000605.01.T01:intron 40.0%
!! ATGATGTGAGTGAGAGTGTT+TGG + Chr1:8579796-8579815 MsG0180000605.01.T01:intron 40.0%
!! GCAGATAATGGGTGAAACAA+AGG + Chr1:8582972-8582991 MsG0180000605.01.T01:intron 40.0%
!! TATCTCGAAAATGGTGATGG+AGG - Chr1:8581250-8581269 None:intergenic 40.0%
!! TCACTTTTCAACACTCTCTC+AGG + Chr1:8581806-8581825 MsG0180000605.01.T01:intron 40.0%
!! TTCTAAAGCCAGAGCTTCTT+CGG + Chr1:8584035-8584054 MsG0180000605.01.T01:CDS 40.0%
!! TTTGCATTGGTTCCACAACA+TGG + Chr1:8579331-8579350 MsG0180000605.01.T01:CDS 40.0%
AAAAATATGAAACGCGCGCC+AGG - Chr1:8578590-8578609 None:intergenic 45.0%
AAATAGAAAGAGGTGGGAGG+GGG + Chr1:8581567-8581586 MsG0180000605.01.T01:intron 45.0%
AAGGACTGAGAAAGAGATGG+AGG + Chr1:8579674-8579693 MsG0180000605.01.T01:CDS 45.0%
ACGGGAAGGAAAGTGGAAAT+TGG - Chr1:8578025-8578044 None:intergenic 45.0%
AGCATGTCGTAGAAACGGTT+CGG - Chr1:8579508-8579527 None:intergenic 45.0%
AGCTTCTTGATTACGAGAGG+AGG + Chr1:8583013-8583032 MsG0180000605.01.T01:CDS 45.0%
AGGTGGAATCTTTCTTCAGC+GGG + Chr1:8580889-8580908 MsG0180000605.01.T01:intron 45.0%
AGTCTCTGAATCCTGAACTG+TGG - Chr1:8584012-8584031 None:intergenic 45.0%
AGTGAAGGACTGTTAGGGTT+AGG - Chr1:8582820-8582839 None:intergenic 45.0%
ATGTGACAGAGAAATCTCCG+AGG - Chr1:8579374-8579393 None:intergenic 45.0%
CACGTAAAGCCTGTTTGGAT+TGG + Chr1:8583486-8583505 MsG0180000605.01.T01:intron 45.0%
GAAATAGAAAGAGGTGGGAG+GGG + Chr1:8581566-8581585 MsG0180000605.01.T01:intron 45.0%
GAACCTACGACTTTCTGCTT+AGG - Chr1:8578548-8578567 None:intergenic 45.0%
GAAGAAGAAAGGGGTGAAAG+AGG + Chr1:8579897-8579916 MsG0180000605.01.T01:CDS 45.0%
GACAATAAGAGCTTGTGGTG+TGG - Chr1:8582044-8582063 None:intergenic 45.0%
GAGAAAGAGATGGAGGAAGA+AGG + Chr1:8579681-8579700 MsG0180000605.01.T01:CDS 45.0%
GATACAAAGGAGGAGAAGCA+AGG + Chr1:8581733-8581752 MsG0180000605.01.T01:intron 45.0%
GCAACATAAACCTCAACAGC+AGG - Chr1:8579831-8579850 None:intergenic 45.0%
GCTGTTGAGGTTTATGTTGC+TGG + Chr1:8579831-8579850 MsG0180000605.01.T01:intron 45.0%
GGAGAAAGCTTGAGAAGTGA+AGG - Chr1:8582835-8582854 None:intergenic 45.0%
GGGTTTGTACTTTGTACGTG+GGG + Chr1:8582641-8582660 MsG0180000605.01.T01:intron 45.0%
GTGAAATAGAAAGAGGTGGG+AGG + Chr1:8581564-8581583 MsG0180000605.01.T01:intron 45.0%
GTGAAGGACTGTTAGGGTTA+GGG - Chr1:8582819-8582838 None:intergenic 45.0%
GTTGAAGTTTCCTGCTGTTG+AGG + Chr1:8579818-8579837 MsG0180000605.01.T01:intron 45.0%
GTTGTAACCAAGCCATGTTG+TGG - Chr1:8579346-8579365 None:intergenic 45.0%
TACCTGCGAGAAGAAGGAAT+TGG - Chr1:8582856-8582875 None:intergenic 45.0%
TATGTTGGGATCCACAGTTC+AGG + Chr1:8583998-8584017 MsG0180000605.01.T01:CDS 45.0%
TTTCAAGGGGTCCAAGTGAT+TGG + Chr1:8581329-8581348 MsG0180000605.01.T01:intron 45.0%
! ATTGGTTCCACAACATGGCT+TGG + Chr1:8579336-8579355 MsG0180000605.01.T01:CDS 45.0%
! TCTAAAGCCAGAGCTTCTTC+GGG + Chr1:8584036-8584055 MsG0180000605.01.T01:CDS 45.0%
! TGTTGATTACCGGTTAGCAC+CGG + Chr1:8579413-8579432 MsG0180000605.01.T01:CDS 45.0%
!! AATGAGGGTGGTGCTATTTC+AGG - Chr1:8579178-8579197 None:intergenic 45.0%
!! ATGAGGGTGGTGCTATTTCA+GGG - Chr1:8579177-8579196 None:intergenic 45.0%
!! CTTCCTGTGATGGGTTTGAA+GGG - Chr1:8579243-8579262 None:intergenic 45.0%
!! GAGAAAGCACCTGATTCAGT+TGG + Chr1:8583038-8583057 MsG0180000605.01.T01:CDS 45.0%
!! TCAACGAGCTTGTTGAAACC+AGG + Chr1:8580738-8580757 MsG0180000605.01.T01:intron 45.0%
!! TCTTCCTGTGATGGGTTTGA+AGG - Chr1:8579244-8579263 None:intergenic 45.0%
!!! AGGGGTAGGAGATTTTTGGT+TGG - Chr1:8579285-8579304 None:intergenic 45.0%
!!! GCTTTTTCAGGGGCTATGTT+GGG + Chr1:8583984-8584003 MsG0180000605.01.T01:intron 45.0%
!!! TGCTTTTTCAGGGGCTATGT+TGG + Chr1:8583983-8584002 MsG0180000605.01.T01:intron 45.0%
!! AATTTATTTCAAAATAAAAA+AGG + Chr1:8580065-8580084 MsG0180000605.01.T01:intron 5.0%
!! TAAAAAAAATAATATTTCTT+GGG - Chr1:8578184-8578203 None:intergenic 5.0%
!!! TATATATATCTTTTTTTTTT+AGG + Chr1:8582194-8582213 MsG0180000605.01.T01:intron 5.0%
!!! TATTTGATTATAATTTTTTT+TGG + Chr1:8580459-8580478 MsG0180000605.01.T01:intron 5.0%
ACAATAGCCCGAAGAAGCTC+TGG - Chr1:8584046-8584065 None:intergenic 50.0%
AGAGCTTCTTCGGGCTATTG+TGG + Chr1:8584045-8584064 MsG0180000605.01.T01:CDS 50.0%
AGCTTGTGGTGTGGCATTTG+TGG - Chr1:8582035-8582054 None:intergenic 50.0%
ATAAGGCACGGGAAGGAAAG+TGG - Chr1:8578032-8578051 None:intergenic 50.0%
CAATGCAAAAGCCACCACCA+TGG - Chr1:8579320-8579339 None:intergenic 50.0%
CTCCAATTCCTTCTTCTCGC+AGG + Chr1:8582851-8582870 MsG0180000605.01.T01:intron 50.0%
GAAAGTCGTAGGTTCGTCGT+AGG + Chr1:8578553-8578572 MsG0180000605.01.T01:intron 50.0%
GCAATTGGAAGACGATGCTC+CGG - Chr1:8579435-8579454 None:intergenic 50.0%
GGCGGATGTAGAGTGAAACA+TGG - Chr1:8578109-8578128 None:intergenic 50.0%
GGTGGAATCTTTCTTCAGCG+GGG + Chr1:8580890-8580909 MsG0180000605.01.T01:intron 50.0%
TGACCCTTCAAACCCATCAC+AGG + Chr1:8579237-8579256 MsG0180000605.01.T01:intron 50.0%
TTGGTTTCCCTCTCCACCAA+AGG - Chr1:8578137-8578156 None:intergenic 50.0%
! CTATCTGGTGATAGTGCTGG+TGG + Chr1:8579546-8579565 MsG0180000605.01.T01:CDS 50.0%
!! CTCGAAAATGGTGATGGAGG+AGG - Chr1:8581247-8581266 None:intergenic 50.0%
!! GATGGAGGAAGAAGGTGTTG+AGG + Chr1:8579689-8579708 MsG0180000605.01.T01:CDS 50.0%
!!! CATGGTGGTGGCTTTTGCAT+TGG + Chr1:8579318-8579337 MsG0180000605.01.T01:CDS 50.0%
ATATGAAACGCGCGCCAGGT+AGG - Chr1:8578586-8578605 None:intergenic 55.0%
CCAGTACCCACACATGTGTG+CGG + Chr1:8582705-8582724 MsG0180000605.01.T01:intron 55.0%
CCCATGTCCTTTGGTGGAGA+GGG + Chr1:8578127-8578146 MsG0180000605.01.T01:intron 55.0%
CCCTCTCCACCAAAGGACAT+GGG - Chr1:8578130-8578149 None:intergenic 55.0%
CGCTCTATCCACTGAGCTAC+AGG - Chr1:8578518-8578537 None:intergenic 55.0%
CTACATCCGCCCATGTCCTT+TGG + Chr1:8578118-8578137 MsG0180000605.01.T01:intron 55.0%
CTTCGGGCTATTGTGGACTC+AGG + Chr1:8584052-8584071 MsG0180000605.01.T01:CDS 55.0%
TATGAAACGCGCGCCAGGTA+GGG - Chr1:8578585-8578604 None:intergenic 55.0%
TCCCTCTCCACCAAAGGACA+TGG - Chr1:8578131-8578150 None:intergenic 55.0%
TCTCCACCAAAGGACATGGG+CGG - Chr1:8578127-8578146 None:intergenic 55.0%
AGGCACACCGCACACATGTG+TGG - Chr1:8582715-8582734 None:intergenic 60.0%
ATGAAACGCGCGCCAGGTAG+GGG - Chr1:8578584-8578603 None:intergenic 60.0%
CATCCGCCCATGTCCTTTGG+TGG + Chr1:8578121-8578140 MsG0180000605.01.T01:intron 60.0%
CCGCACACATGTGTGGGTAC+TGG - Chr1:8582708-8582727 None:intergenic 60.0%
GCCCATGTCCTTTGGTGGAG+AGG + Chr1:8578126-8578145 MsG0180000605.01.T01:intron 60.0%
GGCACACCGCACACATGTGT+GGG - Chr1:8582714-8582733 None:intergenic 60.0%
GTCAAGCGCCTGTAGCTCAG+TGG + Chr1:8578507-8578526 MsG0180000605.01.T01:CDS 60.0%
TCGTAGGTTCGACCCCTACC+TGG + Chr1:8578569-8578588 MsG0180000605.01.T01:intron 60.0%
! GACGATGCTCCGGTGCTAAC+CGG - Chr1:8579425-8579444 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8577864 8584092 8577864 ID=MsG0180000605.01;Name=MsG0180000605.01
Chr1 mRNA 8577864 8584092 8577864 ID=MsG0180000605.01.T01;Parent=MsG0180000605.01;Name=MsG0180000605.01.T01;_AED=0.38;_eAED=0.40;_QI=0|0.6|0.62|0.87|0.8|0.75|16|0|358
Chr1 exon 8583994 8584092 8583994 ID=MsG0180000605.01.T01:exon:2401;Parent=MsG0180000605.01.T01
Chr1 exon 8583212 8583295 8583212 ID=MsG0180000605.01.T01:exon:2400;Parent=MsG0180000605.01.T01
Chr1 exon 8582976 8583074 8582976 ID=MsG0180000605.01.T01:exon:2399;Parent=MsG0180000605.01.T01
Chr1 exon 8579869 8579951 8579869 ID=MsG0180000605.01.T01:exon:2398;Parent=MsG0180000605.01.T01
Chr1 exon 8579259 8579804 8579259 ID=MsG0180000605.01.T01:exon:2397;Parent=MsG0180000605.01.T01
Chr1 exon 8578466 8578563 8578466 ID=MsG0180000605.01.T01:exon:2396;Parent=MsG0180000605.01.T01
Chr1 exon 8577864 8577931 8577864 ID=MsG0180000605.01.T01:exon:2395;Parent=MsG0180000605.01.T01
Chr1 CDS 8577864 8577931 8577864 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Chr1 CDS 8578466 8578563 8578466 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Chr1 CDS 8579259 8579804 8579259 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Chr1 CDS 8579869 8579951 8579869 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Chr1 CDS 8582976 8583074 8582976 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Chr1 CDS 8583212 8583295 8583212 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Chr1 CDS 8583994 8584092 8583994 ID=MsG0180000605.01.T01:cds;Parent=MsG0180000605.01.T01
Gene Sequence

>MsG0180000605.01.T01

ATGAGAGTGGAAGAAGGAGAGGTTTGTTTGTTTGTTGCGAGAAGAAAGGCGATTGTGAATTGTGATTTTCAGAAGGGTAAAGATAACATAACTTGCGGTAATAACGAACGTCAAGCGCCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAAGTCGTAGGAAGACTCTTCATTCCAAATAATCCAACCAAAAATCTCCTACCCCTCTTAGTTTATTTCCATGGTGGTGGCTTTTGCATTGGTTCCACAACATGGCTTGGTTACAACAACTTCCTCGGAGATTTCTCTGTCACATCACAGTCCATTATTCTCTCTGTTGATTACCGGTTAGCACCGGAGCATCGTCTTCCAATTGCTTATGAAGATTGTTACTCATCACTTGAATGGCTTGGTGAAAATGTTAAAACCGAACCGTTTCTACGACATGCTGATTTATCAAATGTTTTTCTATCTGGTGATAGTGCTGGTGGTAACATTTCTCATTATGTTGCTGTTAAAGCTATTCAAAATGATGGGTTTTGTCCTGTGAAGATTAAAGGGGTTATGCTTATTCATCCTTATTTTGGGAGTGAGAAAAGGACTGAGAAAGAGATGGAGGAAGAAGGTGTTGAGGATGTGAGAATGAATGATATGTTTTGGAGATTGAGTTTGCCTGAAGATTCAAACCGCGATTTTATCGGTTGTAATTTTGAGAAAGATGATGTGAGAAAGGTGTTTATGTATGCTGAATTTGTGAAGAAGAAAGGGGTGAAAGAGGTGAATGTTGTTGAGGCTGAAGAAGAGAAACATATAATGGGTGAAACAAAGGAAGAAACATACGAGGAAGAGCTTCTTGATTACGAGAGGAGGATGAGAAAGCACCTGATTCAGTTGGAGCTAAAGTTAACGATGAATCGTAAACACATAGGGTCTGTTTGGAATTTGGATTGGTTTATGAGGTTTTATACTGACATAAGCACTTCTGAGACTATTGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCAGGATTCGAGCATCCCTCTGA
Protein sequence

>MsG0180000605.01.T01

MRVEEGEVCLFVARRKAIVNCDFQKGKDNITCGNNERQAPVAQWIERLFPKQKVVGRLFIPNNPTKNLLPLLVYFHGGGFCIGSTTWLGYNNFLGDFSVTSQSIILSVDYRLAPEHRLPIAYEDCYSSLEWLGENVKTEPFLRHADLSNVFLSGDSAGGNISHYVAVKAIQNDGFCPVKIKGVMLIHPYFGSEKRTEKEMEEEGVEDVRMNDMFWRLSLPEDSNRDFIGCNFEKDDVRKVFMYAEFVKKKGVKEVNVVEAEEEKHIMGETKEETYEEELLDYERRMRKHLIQLELKLTMNRKHIGSVWNLDWFMRFYTDISTSETIGLCWDPQFRIQRLSSKARASSGYCGLRIRASL*