AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000726.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000726.01.T01 MTR_1g009710 98.571 420 6 0 1 420 1 420 0.0 854
MsG0180000726.01.T01 MTR_1g009690 80.569 422 78 2 1 420 1 420 0.0 688
MsG0180000726.01.T01 MTR_1g106765 33.800 429 190 17 4 417 6 355 1.05e-45 162
MsG0180000726.01.T01 MTR_4g095490 34.343 198 104 7 225 420 282 455 9.25e-20 91.7
MsG0180000726.01.T01 MTR_4g095490 30.738 244 134 10 9 246 10 224 1.62e-18 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000726.01.T01 AT2G24530 48.951 429 187 8 1 422 1 404 2.63e-129 380
MsG0180000726.01.T01 AT2G24530 48.951 429 187 8 1 422 1 404 2.63e-129 380
MsG0180000726.01.T01 AT4G31440 46.809 423 174 10 1 420 1 375 6.57e-110 329
MsG0180000726.01.T01 AT4G33890 31.354 421 202 12 4 420 5 342 3.50e-47 166
MsG0180000726.01.T01 AT4G33890 31.354 421 202 12 4 420 5 342 3.50e-47 166
MsG0180000726.01.T01 AT2G14850 30.788 419 156 10 4 420 5 291 1.69e-45 160
MsG0180000726.01.T01 AT5G67410 40.000 135 62 3 8 141 10 126 2.36e-15 76.6
MsG0180000726.01.T01 AT5G67410 40.000 135 62 3 8 141 10 126 2.36e-15 76.6

Find 112 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACACACTTGCACATTC+TGG 0.236384 1:+10318985 None:intergenic
TGGTGCTATCAATGGATTTC+TGG 0.237420 1:+10319179 None:intergenic
CAATCTTCTCCAAGTTGCTT+TGG 0.307007 1:+10318706 None:intergenic
ACAGAGCTCGAGAATTGATT+TGG 0.312652 1:-10319889 MsG0180000726.01.T01:CDS
ATTCACCGGCAATGCTTTGC+GGG 0.319216 1:+10319119 None:intergenic
GTCTCAAAGCCGCAAATTCC+GGG 0.322199 1:-10318865 MsG0180000726.01.T01:CDS
AGTAACACGTGCTCCTGATT+TGG 0.328854 1:+10319635 None:intergenic
ATGAACTGTCGGTGGGGTCT+TGG 0.349710 1:+10319671 None:intergenic
ATCAATTCTCGAGCTCTGTT+GGG 0.356303 1:+10319893 None:intergenic
AGTCTCAAAGCCGCAAATTC+CGG 0.367615 1:-10318866 MsG0180000726.01.T01:CDS
TGCACATGTAAATGATGATT+TGG 0.369994 1:+10318820 None:intergenic
AGAAGATTGGCCACTGCAAT+TGG 0.379188 1:-10318692 MsG0180000726.01.T01:CDS
TGAGCTACCTGAGATTGTTA+TGG 0.380108 1:-10319316 MsG0180000726.01.T01:CDS
GGAATTTGCGGCTTTGAGAC+TGG 0.384593 1:+10318868 None:intergenic
TATTCACCGGCAATGCTTTG+CGG 0.385616 1:+10319118 None:intergenic
ACAGAATCAACTTTACCATT+TGG 0.394029 1:+10319450 None:intergenic
AAAATCATAACGCTTCCATT+TGG 0.395613 1:-10319560 MsG0180000726.01.T01:CDS
TGGGGCCCGCAAAGCATTGC+CGG 0.401331 1:-10319124 MsG0180000726.01.T01:CDS
CCACCGGATTCGTCCAAATC+AGG 0.412809 1:-10319648 MsG0180000726.01.T01:CDS
CCATTTGGTCCAAGTGGACT+CGG 0.415260 1:+10319465 None:intergenic
ATTGCAATGGTACAGGGTCT+TGG 0.415372 1:-10319018 MsG0180000726.01.T01:CDS
TTGTCGCCTGGTGGAGAAGA+TGG 0.430087 1:-10319609 MsG0180000726.01.T01:CDS
CAAGTCTAGTGTTGATTTAG+TGG 0.432995 1:-10318929 MsG0180000726.01.T01:CDS
GACAGAAGACAGCGGTAGTA+AGG 0.434651 1:-10319409 MsG0180000726.01.T01:CDS
CAAAACTCCATTGGTCCAAA+TGG 0.436440 1:+10319545 None:intergenic
ACTGGGAACTTTGTTGTTGT+CGG 0.444912 1:+10318886 None:intergenic
CAGAGCTCGAGAATTGATTT+GGG 0.446012 1:-10319888 MsG0180000726.01.T01:CDS
TTCATAAGCAAAGATGGATC+TGG 0.446240 1:-10318612 MsG0180000726.01.T01:CDS
TCCCCACGCAAGTTACGTTC+TGG 0.446295 1:-10319516 MsG0180000726.01.T01:CDS
ATGAGTTTCCCCGGAATTTG+CGG 0.448522 1:+10318856 None:intergenic
GTACAGATTGTAAAGAAGAT+TGG 0.449697 1:-10319855 MsG0180000726.01.T01:CDS
CAAAGCAACTTGGAGAAGAT+TGG 0.455824 1:-10318705 MsG0180000726.01.T01:CDS
TCCTTACTGCTCTGCAAGTG+TGG 0.460129 1:-10319148 MsG0180000726.01.T01:CDS
ACTGCTCTGCAAGTGTGGGT+GGG 0.460160 1:-10319143 MsG0180000726.01.T01:CDS
GCTCCTGATTTGGACGAATC+CGG 0.465024 1:+10319645 None:intergenic
GAATTTGCGGCTTTGAGACT+GGG 0.465546 1:+10318869 None:intergenic
AATCAATTCTCGAGCTCTGT+TGG 0.466554 1:+10319892 None:intergenic
TACTGCTCTGCAAGTGTGGG+TGG 0.466741 1:-10319144 MsG0180000726.01.T01:CDS
GAGAACTGAGATCTGTGTTC+GGG 0.468852 1:+10318769 None:intergenic
GGAGCAGATTGCAATGGTAC+AGG 0.470406 1:-10319025 MsG0180000726.01.T01:CDS
CTGCTCTGCAAGTGTGGGTG+GGG 0.472570 1:-10319142 MsG0180000726.01.T01:CDS
CGAACACAGATCTCAGTTCT+CGG 0.473619 1:-10318767 MsG0180000726.01.T01:CDS
AAGTATCGCTTCGACTTATC+CGG 0.475561 1:+10319831 None:intergenic
GAAAGATCAACCGTGGAAGA+TGG 0.476456 1:-10319237 MsG0180000726.01.T01:CDS
CGAGAACTGAGATCTGTGTT+CGG 0.476927 1:+10318768 None:intergenic
CCATCAGCCATAACAATCTC+AGG 0.478729 1:+10319309 None:intergenic
ATCCCCAGTGGTGCTATCAA+TGG 0.479286 1:+10319171 None:intergenic
ATTGAGGCGGTTTAATTGCT+CGG 0.486900 1:+10319206 None:intergenic
CGTGTTACTAATTTGTCGCC+TGG 0.493200 1:-10319621 MsG0180000726.01.T01:CDS
AACGCTTCCATTTGGACCAA+TGG 0.494514 1:-10319552 MsG0180000726.01.T01:CDS
CCGAGTCCACTTGGACCAAA+TGG 0.499909 1:-10319465 MsG0180000726.01.T01:CDS
CATTTACATGTGCAGAGTGC+TGG 0.499919 1:-10318811 MsG0180000726.01.T01:CDS
AAATCCATTGATAGCACCAC+TGG 0.501258 1:-10319175 MsG0180000726.01.T01:CDS
CGGTGGGGTCTTGGCTTGCA+AGG 0.502720 1:+10319680 None:intergenic
ATGGATTTCTGGCGAAATTG+AGG 0.507694 1:+10319190 None:intergenic
CCTGAGATTGTTATGGCTGA+TGG 0.514035 1:-10319309 MsG0180000726.01.T01:CDS
CGTAACTTGCGTGGGGACAC+AGG 0.521921 1:+10319522 None:intergenic
GAGCTAAATCCAAAGCAACT+TGG 0.524445 1:-10318715 MsG0180000726.01.T01:CDS
ATCAAAGAATACGTGGCAAA+GGG 0.531500 1:-10319266 MsG0180000726.01.T01:CDS
AAAGATGGATCTGGATCTGA+TGG 0.531938 1:-10318603 None:intergenic
TGTTATGGCTGATGGTATGC+AGG 0.533417 1:-10319301 MsG0180000726.01.T01:CDS
GGCCTCCTCTCCATCTTCCA+CGG 0.540996 1:+10319227 None:intergenic
TCCGGTGGATGAACTGTCGG+TGG 0.549105 1:+10319663 None:intergenic
CCCACACTTGCAGAGCAGTA+AGG 0.549358 1:+10319147 None:intergenic
TGTCGCCTGGTGGAGAAGAT+GGG 0.549648 1:-10319608 MsG0180000726.01.T01:CDS
AAGTCTAGTGTTGATTTAGT+GGG 0.549902 1:-10318928 MsG0180000726.01.T01:CDS
ACTACTTGAAGATGCTGAGT+TGG 0.550370 1:+10319342 None:intergenic
TGTGCAGAGTGCTGGTAGGT+TGG 0.556239 1:-10318803 MsG0180000726.01.T01:CDS
AAAGACAGACCGAGTCCACT+TGG 0.556583 1:-10319474 MsG0180000726.01.T01:CDS
CCTTACTGCTCTGCAAGTGT+GGG 0.556774 1:-10319147 MsG0180000726.01.T01:CDS
GCAATGGTACAGGGTCTTGG+AGG 0.558899 1:-10319015 MsG0180000726.01.T01:CDS
ATGCCATTGATGAGTTTCCC+CGG 0.560395 1:+10318847 None:intergenic
CCGGTGGATGAACTGTCGGT+GGG 0.560734 1:+10319664 None:intergenic
AATCAAAGAATACGTGGCAA+AGG 0.561938 1:-10319267 MsG0180000726.01.T01:CDS
ATTCCGGGGAAACTCATCAA+TGG 0.564165 1:-10318850 MsG0180000726.01.T01:CDS
CAGCGGTAGTAAGGTTGACA+TGG 0.567635 1:-10319400 MsG0180000726.01.T01:CDS
TCAATTCTCGAGCTCTGTTG+GGG 0.568164 1:+10319894 None:intergenic
GCATTGCCGGTGAATAGCGC+TGG 0.568408 1:-10319111 MsG0180000726.01.T01:CDS
TTTATAAAATGATTGTGTAA+CGG 0.569921 1:+10319720 None:intergenic
ACTTTACCATTTGGTCCAAG+TGG 0.573091 1:+10319459 None:intergenic
CTGATACAGATACGCTGAGA+AGG 0.574647 1:-10319053 MsG0180000726.01.T01:CDS
AAATCACCAGCGCTATTCAC+CGG 0.575040 1:+10319105 None:intergenic
TTCCAGAACGTAACTTGCGT+GGG 0.579269 1:+10319514 None:intergenic
TCATGCCCATCTTCTCCACC+AGG 0.580795 1:+10319603 None:intergenic
GGACACAGGCAAAACTCCAT+TGG 0.588341 1:+10319536 None:intergenic
ATCAACCGTGGAAGATGGAG+AGG 0.598348 1:-10319232 MsG0180000726.01.T01:CDS
GAGCAGATTGCAATGGTACA+GGG 0.607099 1:-10319024 MsG0180000726.01.T01:CDS
AACCGTGGAAGATGGAGAGG+AGG 0.607545 1:-10319229 MsG0180000726.01.T01:CDS
GATTGTAAAGAAGATTGGAC+CGG 0.609569 1:-10319850 MsG0180000726.01.T01:CDS
ATTCCAGAACGTAACTTGCG+TGG 0.610589 1:+10319513 None:intergenic
AGTAAGGTTGACATGGAGAA+CGG 0.614127 1:-10319393 MsG0180000726.01.T01:CDS
CCCACCGACAGTTCATCCAC+CGG 0.614176 1:-10319664 MsG0180000726.01.T01:CDS
GTTACTAATTTGTCGCCTGG+TGG 0.615154 1:-10319618 MsG0180000726.01.T01:CDS
AATCCATTGATAGCACCACT+GGG 0.616718 1:-10319174 MsG0180000726.01.T01:CDS
AGATACGCTGAGAAGGCGCA+TGG 0.628849 1:-10319046 MsG0180000726.01.T01:CDS
GAATCCGGTGGATGAACTGT+CGG 0.630036 1:+10319660 None:intergenic
GATTTCTGGCGAAATTGAGG+CGG 0.632231 1:+10319193 None:intergenic
TTTGTTAGTTGTAGTGACAG+TGG 0.638170 1:-10319084 MsG0180000726.01.T01:CDS
CCTGATTTGGACGAATCCGG+TGG 0.638863 1:+10319648 None:intergenic
TCTCAAAGCCGCAAATTCCG+GGG 0.654747 1:-10318864 MsG0180000726.01.T01:CDS
GCGCATGGAGCAGATTGCAA+TGG 0.659397 1:-10319031 MsG0180000726.01.T01:CDS
CGGTGGATGAACTGTCGGTG+GGG 0.681065 1:+10319665 None:intergenic
GTTATGGCTGATGGTATGCA+GGG 0.682690 1:-10319300 MsG0180000726.01.T01:CDS
GCTGACTGAAAGATCAACCG+TGG 0.687363 1:-10319244 MsG0180000726.01.T01:CDS
GTTGGTCGCTGATAATCACA+TGG 0.688541 1:+10319360 None:intergenic
TCCAGAACGTAACTTGCGTG+GGG 0.692499 1:+10319515 None:intergenic
AAGTGTGTTGAATAGCGTGT+TGG 0.715126 1:-10318974 MsG0180000726.01.T01:CDS
TACATGTGCAGAGTGCTGGT+AGG 0.715710 1:-10318807 MsG0180000726.01.T01:CDS
GCAGAAAATCAAAGAATACG+TGG 0.716065 1:-10319273 MsG0180000726.01.T01:CDS
GAGCAGTAAGGAATCCCCAG+TGG 0.746254 1:+10319159 None:intergenic
ATCCATTGATAGCACCACTG+GGG 0.760915 1:-10319173 MsG0180000726.01.T01:CDS
TATACAGCGACAGAAGACAG+CGG 0.806078 1:-10319417 MsG0180000726.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAAATGATTGTGTAA+CGG + Chr1:10318789-10318808 None:intergenic 15.0%
!!! AGTTTGATAAGTTATGTTTT+CGG - Chr1:10318742-10318761 MsG0180000726.01.T01:CDS 20.0%
!! GATACTTTTATTACCTTAAC+AGG - Chr1:10318691-10318710 MsG0180000726.01.T01:CDS 25.0%
!! GTTTGATAAGTTATGTTTTC+GGG - Chr1:10318743-10318762 MsG0180000726.01.T01:CDS 25.0%
!! TTCATTTTCATAAGCAAAGA+TGG - Chr1:10319888-10319907 MsG0180000726.01.T01:CDS 25.0%
AAAATCATAACGCTTCCATT+TGG - Chr1:10318946-10318965 MsG0180000726.01.T01:CDS 30.0%
ACAGAATCAACTTTACCATT+TGG + Chr1:10319059-10319078 None:intergenic 30.0%
GTACAGATTGTAAAGAAGAT+TGG - Chr1:10318651-10318670 MsG0180000726.01.T01:CDS 30.0%
TGCACATGTAAATGATGATT+TGG + Chr1:10319689-10319708 None:intergenic 30.0%
!! AAGTCTAGTGTTGATTTAGT+GGG - Chr1:10319578-10319597 MsG0180000726.01.T01:CDS 30.0%
AATCAAAGAATACGTGGCAA+AGG - Chr1:10319239-10319258 MsG0180000726.01.T01:CDS 35.0%
ATCAAAGAATACGTGGCAAA+GGG - Chr1:10319240-10319259 MsG0180000726.01.T01:CDS 35.0%
GATTGTAAAGAAGATTGGAC+CGG - Chr1:10318656-10318675 MsG0180000726.01.T01:CDS 35.0%
GCAGAAAATCAAAGAATACG+TGG - Chr1:10319233-10319252 MsG0180000726.01.T01:CDS 35.0%
TCTGACTCAAAAACCTGTTA+AGG + Chr1:10318707-10318726 None:intergenic 35.0%
TTCATAAGCAAAGATGGATC+TGG - Chr1:10319894-10319913 MsG0180000726.01.T01:CDS 35.0%
TTTGTTAGTTGTAGTGACAG+TGG - Chr1:10319422-10319441 MsG0180000726.01.T01:CDS 35.0%
! GAAATTTTCTCCAATTGCAG+TGG + Chr1:10319827-10319846 None:intergenic 35.0%
!! AGCGTTATGATTTTGAAAGC+TGG + Chr1:10318940-10318959 None:intergenic 35.0%
!! CAAGTCTAGTGTTGATTTAG+TGG - Chr1:10319577-10319596 MsG0180000726.01.T01:CDS 35.0%
!!! AAGTTATGTTTTCGGGTACT+CGG - Chr1:10318750-10318769 MsG0180000726.01.T01:CDS 35.0%
!!! GCATGATTTTAAAGTTGCGA+TGG - Chr1:10319769-10319788 MsG0180000726.01.T01:CDS 35.0%
AAGTGTGTTGAATAGCGTGT+TGG - Chr1:10319532-10319551 MsG0180000726.01.T01:CDS 40.0%
AATCAATTCTCGAGCTCTGT+TGG + Chr1:10318617-10318636 None:intergenic 40.0%
ACAGAGCTCGAGAATTGATT+TGG - Chr1:10318617-10318636 MsG0180000726.01.T01:CDS 40.0%
ACTACTTGAAGATGCTGAGT+TGG + Chr1:10319167-10319186 None:intergenic 40.0%
ACTTTACCATTTGGTCCAAG+TGG + Chr1:10319050-10319069 None:intergenic 40.0%
AGTAAGGTTGACATGGAGAA+CGG - Chr1:10319113-10319132 MsG0180000726.01.T01:CDS 40.0%
ATCAATTCTCGAGCTCTGTT+GGG + Chr1:10318616-10318635 None:intergenic 40.0%
ATTGAGGCGGTTTAATTGCT+CGG + Chr1:10319303-10319322 None:intergenic 40.0%
CAAAACTCCATTGGTCCAAA+TGG + Chr1:10318964-10318983 None:intergenic 40.0%
CAAAGCAACTTGGAGAAGAT+TGG - Chr1:10319801-10319820 MsG0180000726.01.T01:CDS 40.0%
CAATCTTCTCCAAGTTGCTT+TGG + Chr1:10319803-10319822 None:intergenic 40.0%
GAGCTAAATCCAAAGCAACT+TGG - Chr1:10319791-10319810 MsG0180000726.01.T01:CDS 40.0%
TGAGCTACCTGAGATTGTTA+TGG - Chr1:10319190-10319209 MsG0180000726.01.T01:CDS 40.0%
TTCAACACACTTGCACATTC+TGG + Chr1:10319524-10319543 None:intergenic 40.0%
! AAATCCATTGATAGCACCAC+TGG - Chr1:10319331-10319350 MsG0180000726.01.T01:CDS 40.0%
! AAGTATCGCTTCGACTTATC+CGG + Chr1:10318678-10318697 None:intergenic 40.0%
! AATCCATTGATAGCACCACT+GGG - Chr1:10319332-10319351 MsG0180000726.01.T01:CDS 40.0%
! CAGAGCTCGAGAATTGATTT+GGG - Chr1:10318618-10318637 MsG0180000726.01.T01:CDS 40.0%
!! ACTGGGAACTTTGTTGTTGT+CGG + Chr1:10319623-10319642 None:intergenic 40.0%
!! ATGGATTTCTGGCGAAATTG+AGG + Chr1:10319319-10319338 None:intergenic 40.0%
!! TGGTGCTATCAATGGATTTC+TGG + Chr1:10319330-10319349 None:intergenic 40.0%
!!! AGTTATGTTTTCGGGTACTC+GGG - Chr1:10318751-10318770 MsG0180000726.01.T01:CDS 40.0%
AAATCACCAGCGCTATTCAC+CGG + Chr1:10319404-10319423 None:intergenic 45.0%
AACGCTTCCATTTGGACCAA+TGG - Chr1:10318954-10318973 MsG0180000726.01.T01:CDS 45.0%
AGTAACACGTGCTCCTGATT+TGG + Chr1:10318874-10318893 None:intergenic 45.0%
AGTCTCAAAGCCGCAAATTC+CGG - Chr1:10319640-10319659 MsG0180000726.01.T01:CDS 45.0%
ATGAGTTTCCCCGGAATTTG+CGG + Chr1:10319653-10319672 None:intergenic 45.0%
ATGCCATTGATGAGTTTCCC+CGG + Chr1:10319662-10319681 None:intergenic 45.0%
ATTCCGGGGAAACTCATCAA+TGG - Chr1:10319656-10319675 MsG0180000726.01.T01:CDS 45.0%
ATTGCAATGGTACAGGGTCT+TGG - Chr1:10319488-10319507 MsG0180000726.01.T01:CDS 45.0%
CATTTACATGTGCAGAGTGC+TGG - Chr1:10319695-10319714 MsG0180000726.01.T01:CDS 45.0%
CCATCAGCCATAACAATCTC+AGG + Chr1:10319200-10319219 None:intergenic 45.0%
CCTGAGATTGTTATGGCTGA+TGG - Chr1:10319197-10319216 MsG0180000726.01.T01:CDS 45.0%
CGAACACAGATCTCAGTTCT+CGG - Chr1:10319739-10319758 MsG0180000726.01.T01:CDS 45.0%
CGAGAACTGAGATCTGTGTT+CGG + Chr1:10319741-10319760 None:intergenic 45.0%
CTGATACAGATACGCTGAGA+AGG - Chr1:10319453-10319472 MsG0180000726.01.T01:CDS 45.0%
GAAAGATCAACCGTGGAAGA+TGG - Chr1:10319269-10319288 MsG0180000726.01.T01:CDS 45.0%
GAGAACTGAGATCTGTGTTC+GGG + Chr1:10319740-10319759 None:intergenic 45.0%
GAGCAGATTGCAATGGTACA+GGG - Chr1:10319482-10319501 MsG0180000726.01.T01:CDS 45.0%
GTTATGGCTGATGGTATGCA+GGG - Chr1:10319206-10319225 MsG0180000726.01.T01:CDS 45.0%
GTTGGTCGCTGATAATCACA+TGG + Chr1:10319149-10319168 None:intergenic 45.0%
TATACAGCGACAGAAGACAG+CGG - Chr1:10319089-10319108 MsG0180000726.01.T01:CDS 45.0%
TATTCACCGGCAATGCTTTG+CGG + Chr1:10319391-10319410 None:intergenic 45.0%
TCAATTCTCGAGCTCTGTTG+GGG + Chr1:10318615-10318634 None:intergenic 45.0%
TGTTATGGCTGATGGTATGC+AGG - Chr1:10319205-10319224 MsG0180000726.01.T01:CDS 45.0%
! AGAAGATTGGCCACTGCAAT+TGG - Chr1:10319814-10319833 MsG0180000726.01.T01:CDS 45.0%
! ATCCATTGATAGCACCACTG+GGG - Chr1:10319333-10319352 MsG0180000726.01.T01:CDS 45.0%
! ATTCCAGAACGTAACTTGCG+TGG + Chr1:10318996-10319015 None:intergenic 45.0%
! CGTGTTACTAATTTGTCGCC+TGG - Chr1:10318885-10318904 MsG0180000726.01.T01:CDS 45.0%
! GTTACTAATTTGTCGCCTGG+TGG - Chr1:10318888-10318907 MsG0180000726.01.T01:CDS 45.0%
! TTCCAGAACGTAACTTGCGT+GGG + Chr1:10318995-10319014 None:intergenic 45.0%
!! GAATTTGCGGCTTTGAGACT+GGG + Chr1:10319640-10319659 None:intergenic 45.0%
!! GATTTCTGGCGAAATTGAGG+CGG + Chr1:10319316-10319335 None:intergenic 45.0%
AAAGACAGACCGAGTCCACT+TGG - Chr1:10319032-10319051 MsG0180000726.01.T01:CDS 50.0%
ATCAACCGTGGAAGATGGAG+AGG - Chr1:10319274-10319293 MsG0180000726.01.T01:CDS 50.0%
ATTCACCGGCAATGCTTTGC+GGG + Chr1:10319390-10319409 None:intergenic 50.0%
CAGCGGTAGTAAGGTTGACA+TGG - Chr1:10319106-10319125 MsG0180000726.01.T01:CDS 50.0%
CCTTACTGCTCTGCAAGTGT+GGG - Chr1:10319359-10319378 MsG0180000726.01.T01:CDS 50.0%
GAATCCGGTGGATGAACTGT+CGG + Chr1:10318849-10318868 None:intergenic 50.0%
GACAGAAGACAGCGGTAGTA+AGG - Chr1:10319097-10319116 MsG0180000726.01.T01:CDS 50.0%
GCTGACTGAAAGATCAACCG+TGG - Chr1:10319262-10319281 MsG0180000726.01.T01:CDS 50.0%
GGACACAGGCAAAACTCCAT+TGG + Chr1:10318973-10318992 None:intergenic 50.0%
GGAGCAGATTGCAATGGTAC+AGG - Chr1:10319481-10319500 MsG0180000726.01.T01:CDS 50.0%
GTCTCAAAGCCGCAAATTCC+GGG - Chr1:10319641-10319660 MsG0180000726.01.T01:CDS 50.0%
TCCTTACTGCTCTGCAAGTG+TGG - Chr1:10319358-10319377 MsG0180000726.01.T01:CDS 50.0%
TCTCAAAGCCGCAAATTCCG+GGG - Chr1:10319642-10319661 MsG0180000726.01.T01:CDS 50.0%
! CCATTTGGTCCAAGTGGACT+CGG + Chr1:10319044-10319063 None:intergenic 50.0%
! TCCAGAACGTAACTTGCGTG+GGG + Chr1:10318994-10319013 None:intergenic 50.0%
!! ATCCCCAGTGGTGCTATCAA+TGG + Chr1:10319338-10319357 None:intergenic 50.0%
!! GCTCCTGATTTGGACGAATC+CGG + Chr1:10318864-10318883 None:intergenic 50.0%
!! GGAATTTGCGGCTTTGAGAC+TGG + Chr1:10319641-10319660 None:intergenic 50.0%
!! TACATGTGCAGAGTGCTGGT+AGG - Chr1:10319699-10319718 MsG0180000726.01.T01:CDS 50.0%
!!! ATGTTTTCGGGTACTCGGGA+GGG - Chr1:10318755-10318774 MsG0180000726.01.T01:CDS 50.0%
!!! TATGTTTTCGGGTACTCGGG+AGG - Chr1:10318754-10318773 MsG0180000726.01.T01:CDS 50.0%
AACCGTGGAAGATGGAGAGG+AGG - Chr1:10319277-10319296 MsG0180000726.01.T01:CDS 55.0%
ACTGCTCTGCAAGTGTGGGT+GGG - Chr1:10319363-10319382 MsG0180000726.01.T01:CDS 55.0%
ATGAACTGTCGGTGGGGTCT+TGG + Chr1:10318838-10318857 None:intergenic 55.0%
CCACCGGATTCGTCCAAATC+AGG - Chr1:10318858-10318877 MsG0180000726.01.T01:CDS 55.0%
CCCACACTTGCAGAGCAGTA+AGG + Chr1:10319362-10319381 None:intergenic 55.0%
CCGAGTCCACTTGGACCAAA+TGG - Chr1:10319041-10319060 MsG0180000726.01.T01:CDS 55.0%
GAGCAGTAAGGAATCCCCAG+TGG + Chr1:10319350-10319369 None:intergenic 55.0%
GCAATGGTACAGGGTCTTGG+AGG - Chr1:10319491-10319510 MsG0180000726.01.T01:CDS 55.0%
GCGCATGGAGCAGATTGCAA+TGG - Chr1:10319475-10319494 MsG0180000726.01.T01:CDS 55.0%
TACTGCTCTGCAAGTGTGGG+TGG - Chr1:10319362-10319381 MsG0180000726.01.T01:CDS 55.0%
TCATGCCCATCTTCTCCACC+AGG + Chr1:10318906-10318925 None:intergenic 55.0%
TCCCCACGCAAGTTACGTTC+TGG - Chr1:10318990-10319009 MsG0180000726.01.T01:CDS 55.0%
TGTCGCCTGGTGGAGAAGAT+GGG - Chr1:10318898-10318917 MsG0180000726.01.T01:CDS 55.0%
TTGTCGCCTGGTGGAGAAGA+TGG - Chr1:10318897-10318916 MsG0180000726.01.T01:CDS 55.0%
! AGATACGCTGAGAAGGCGCA+TGG - Chr1:10319460-10319479 MsG0180000726.01.T01:CDS 55.0%
!! CCTGATTTGGACGAATCCGG+TGG + Chr1:10318861-10318880 None:intergenic 55.0%
!! TGTGCAGAGTGCTGGTAGGT+TGG - Chr1:10319703-10319722 MsG0180000726.01.T01:CDS 55.0%
CCCACCGACAGTTCATCCAC+CGG - Chr1:10318842-10318861 MsG0180000726.01.T01:CDS 60.0%
CCGGTGGATGAACTGTCGGT+GGG + Chr1:10318845-10318864 None:intergenic 60.0%
CGGTGGATGAACTGTCGGTG+GGG + Chr1:10318844-10318863 None:intergenic 60.0%
CTGCTCTGCAAGTGTGGGTG+GGG - Chr1:10319364-10319383 MsG0180000726.01.T01:CDS 60.0%
GCATTGCCGGTGAATAGCGC+TGG - Chr1:10319395-10319414 MsG0180000726.01.T01:CDS 60.0%
GGCCTCCTCTCCATCTTCCA+CGG + Chr1:10319282-10319301 None:intergenic 60.0%
TCCGGTGGATGAACTGTCGG+TGG + Chr1:10318846-10318865 None:intergenic 60.0%
! CGTAACTTGCGTGGGGACAC+AGG + Chr1:10318987-10319006 None:intergenic 60.0%
!! CGGTGGGGTCTTGGCTTGCA+AGG + Chr1:10318829-10318848 None:intergenic 65.0%
!! TGGGGCCCGCAAAGCATTGC+CGG - Chr1:10319382-10319401 MsG0180000726.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 10318606 10319922 10318606 ID=MsG0180000726.01;Name=MsG0180000726.01
Chr1 mRNA 10318606 10319922 10318606 ID=MsG0180000726.01.T01;Parent=MsG0180000726.01;Name=MsG0180000726.01.T01;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|438
Chr1 exon 10318606 10319922 10318606 ID=MsG0180000726.01.T01:exon:1349;Parent=MsG0180000726.01.T01
Chr1 CDS 10318606 10319922 10318606 ID=MsG0180000726.01.T01:cds;Parent=MsG0180000726.01.T01
Gene Sequence

>MsG0180000726.01.T01

ATGCAACCCCAACAGAGCTCGAGAATTGATTTGGGCGAGTTGAAAGTACAGATTGTAAAGAAGATTGGACCGGATAAGTCGAAGCGATACTTTTATTACCTTAACAGGTTTTTGAGTCAGAAGTTGAGTAAGAGTGAGTTTGATAAGTTATGTTTTCGGGTACTCGGGAGGGAGAATCTTCCGTTACACAATCATTTTATAAAGTCGATTTTGAAGAATACCTTGCAAGCCAAGACCCCACCGACAGTTCATCCACCGGATTCGTCCAAATCAGGAGCACGTGTTACTAATTTGTCGCCTGGTGGAGAAGATGGGCATGAACAGAGTGCTGCCAGCTTTCAAAATCATAACGCTTCCATTTGGACCAATGGAGTTTTGCCTGTGTCCCCACGCAAGTTACGTTCTGGAATGCGTGAACGCAAGCTTAAAGACAGACCGAGTCCACTTGGACCAAATGGTAAAGTTGATTCTGTTGCTCATCAATATACAGCGACAGAAGACAGCGGTAGTAAGGTTGACATGGAGAACGGAACTCTTACTCCATGTGATTATCAGCGACCAACTCAGCATCTTCAAGTAGTTTCTGAGCTACCTGAGATTGTTATGGCTGATGGTATGCAGGGTATTGCAGAAAATCAAAGAATACGTGGCAAAGGGCTGACTGAAAGATCAACCGTGGAAGATGGAGAGGAGGCCGAGCAATTAAACCGCCTCAATTTCGCCAGAAATCCATTGATAGCACCACTGGGGATTCCTTACTGCTCTGCAAGTGTGGGTGGGGCCCGCAAAGCATTGCCGGTGAATAGCGCTGGTGATTTTGTTAGTTGTAGTGACAGTGGTAGATTATCTGATACAGATACGCTGAGAAGGCGCATGGAGCAGATTGCAATGGTACAGGGTCTTGGAGGTGTTTCTCCAGAATGTGCAAGTGTGTTGAATAGCGTGTTGGATGTATACTTGAAACGATTGATCAAGTCTAGTGTTGATTTAGTGGGAGCTAGATCTGCAAATGAGCCGACAACAACAAAGTTCCCAGTCTCAAAGCCGCAAATTCCGGGGAAACTCATCAATGGCATGTTGCCAAATCATCATTTACATGTGCAGAGTGCTGGTAGGTTGGCTGAATCTGAACCCGAACACAGATCTCAGTTCTCGGTATCGTTGCATGATTTTAAAGTTGCGATGGAGCTAAATCCAAAGCAACTTGGAGAAGATTGGCCACTGCAATTGGAGAAAATTTCGATGCAATCTTTTGAGAAAACAGATCAGTTAAGATTTTTTTTTCATTTTCATAAGCAAAGATGGATCTGGATCTGA
Protein sequence

>MsG0180000726.01.T01

MQPQQSSRIDLGELKVQIVKKIGPDKSKRYFYYLNRFLSQKLSKSEFDKLCFRVLGRENLPLHNHFIKSILKNTLQAKTPPTVHPPDSSKSGARVTNLSPGGEDGHEQSAASFQNHNASIWTNGVLPVSPRKLRSGMRERKLKDRPSPLGPNGKVDSVAHQYTATEDSGSKVDMENGTLTPCDYQRPTQHLQVVSELPEIVMADGMQGIAENQRIRGKGLTERSTVEDGEEAEQLNRLNFARNPLIAPLGIPYCSASVGGARKALPVNSAGDFVSCSDSGRLSDTDTLRRRMEQIAMVQGLGGVSPECASVLNSVLDVYLKRLIKSSVDLVGARSANEPTTTKFPVSKPQIPGKLINGMLPNHHLHVQSAGRLAESEPEHRSQFSVSLHDFKVAMELNPKQLGEDWPLQLEKISMQSFEKTDQLRFFFHFHKQRWIWI*