AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001552.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001552.01.T01 MTR_1g038300 81.897 232 9 1 1 199 1 232 2.35e-135 378
MsG0180001552.01.T01 MTR_7g075850 43.662 142 76 2 1 142 1 138 1.50e-34 123
MsG0180001552.01.T01 MTR_8g033270 44.366 142 74 2 1 142 1 137 1.37e-32 117
MsG0180001552.01.T01 MTR_2g009890 46.154 143 65 5 1 140 1 134 1.89e-31 115
MsG0180001552.01.T01 MTR_1g053070 38.647 207 96 5 1 178 1 205 1.99e-31 115
MsG0180001552.01.T01 MTR_3g088615 38.028 142 78 2 1 141 1 133 2.71e-31 112
MsG0180001552.01.T01 MTR_8g066260 41.844 141 76 3 1 140 1 136 2.07e-30 112
MsG0180001552.01.T01 MTR_1g101970 41.558 154 76 3 1 149 1 145 2.58e-30 110
MsG0180001552.01.T01 MTR_7g016630 40.845 142 78 3 1 142 1 136 1.92e-29 110
MsG0180001552.01.T01 MTR_5g031000 43.662 142 69 4 1 140 1 133 2.21e-29 108
MsG0180001552.01.T01 MTR_5g031000 43.662 142 69 4 1 140 1 133 3.22e-29 108
MsG0180001552.01.T01 MTR_1g029670 37.589 141 78 2 1 140 1 132 4.50e-29 107
MsG0180001552.01.T01 MTR_7g016600 40.000 140 79 2 1 140 1 135 5.66e-29 108
MsG0180001552.01.T01 MTR_4g109830 42.553 141 75 4 1 140 1 136 2.46e-28 106
MsG0180001552.01.T01 MTR_7g075870 42.254 142 76 3 1 141 1 137 4.04e-28 105
MsG0180001552.01.T01 MTR_5g046870 61.333 75 28 1 1 75 1 74 5.57e-28 102
MsG0180001552.01.T01 MTR_3g084980 40.714 140 80 2 1 140 1 137 5.83e-28 105
MsG0180001552.01.T01 MTR_7g075870 42.254 142 75 3 1 141 1 136 9.87e-28 104
MsG0180001552.01.T01 MTR_3g005530 39.490 157 76 4 1 148 1 147 2.29e-27 103
MsG0180001552.01.T01 MTR_4g102530 39.583 144 78 3 1 142 1 137 4.46e-27 102
MsG0180001552.01.T01 MTR_6g464720 38.926 149 88 2 1 149 1 146 8.78e-27 102
MsG0180001552.01.T01 MTR_6g015975 42.553 141 74 4 1 140 1 135 9.16e-27 102
MsG0180001552.01.T01 MTR_3g452380 38.462 143 81 3 1 142 16 152 1.04e-26 102
MsG0180001552.01.T01 MTR_8g087860 37.415 147 77 4 1 142 17 153 1.19e-26 102
MsG0180001552.01.T01 MTR_4g036050 37.572 173 100 5 1 170 1 168 2.15e-26 99.8
MsG0180001552.01.T01 MTR_5g046790 39.716 141 79 3 1 140 1 136 2.74e-26 100
MsG0180001552.01.T01 MTR_8g097090 39.286 140 82 2 1 140 1 137 5.97e-26 100
MsG0180001552.01.T01 MTR_3g113030 37.086 151 83 2 1 151 1 139 1.15e-25 99.4
MsG0180001552.01.T01 MTR_4g036050 35.484 186 100 5 1 170 1 182 2.13e-25 97.8
MsG0180001552.01.T01 MTR_5g032150 38.235 170 60 5 1 152 1 143 2.49e-25 98.6
MsG0180001552.01.T01 MTR_4g036050 40.426 141 79 3 1 140 1 137 3.10e-25 97.4
MsG0180001552.01.T01 MTR_8g033220 40.268 149 71 4 1 142 1 138 4.73e-25 97.8
MsG0180001552.01.T01 MTR_8g033220 40.268 149 71 4 1 142 1 138 4.90e-25 97.8
MsG0180001552.01.T01 MTR_4g036050 40.426 141 79 3 1 140 1 137 4.96e-25 97.1
MsG0180001552.01.T01 MTR_2g017865 37.162 148 76 4 1 142 16 152 6.62e-25 98.2
MsG0180001552.01.T01 MTR_5g032520 38.750 160 57 4 1 142 1 137 1.03e-24 97.1
MsG0180001552.01.T01 MTR_4g109810 37.143 140 82 2 1 140 1 134 1.33e-24 97.1
MsG0180001552.01.T01 MTR_2g461710 66.667 60 20 0 1 60 1 60 2.89e-24 90.9
MsG0180001552.01.T01 MTR_5g066180 40.506 158 80 4 1 152 1 150 3.25e-24 95.5
MsG0180001552.01.T01 MTR_0003s0590 57.333 75 30 1 1 75 1 73 2.29e-23 94.0
MsG0180001552.01.T01 MTR_5g021270 37.241 145 81 2 1 142 1 138 4.21e-23 92.8
MsG0180001552.01.T01 MTR_5g021270 37.241 145 81 2 1 142 1 138 4.34e-23 92.8
MsG0180001552.01.T01 MTR_4g093030 55.172 87 25 2 1 73 1 87 1.59e-22 89.4
MsG0180001552.01.T01 MTR_5g066960 64.407 59 21 0 1 59 1 59 1.80e-21 83.6
MsG0180001552.01.T01 MTR_4g093970 38.776 147 83 3 1 145 27 168 1.50e-20 86.3
MsG0180001552.01.T01 MTR_3g102570 54.930 71 31 1 1 71 1 70 8.32e-20 85.5
MsG0180001552.01.T01 MTR_4g084740 50.704 71 34 1 1 71 1 70 8.58e-18 80.1
MsG0180001552.01.T01 MTR_2g093190 30.698 215 105 9 2 184 9 211 2.18e-16 74.7
MsG0180001552.01.T01 MTR_8g086290 48.649 74 36 1 2 75 12 83 4.07e-16 73.2
MsG0180001552.01.T01 MTR_1g108510 48.571 70 34 1 2 71 9 76 7.41e-16 73.6
MsG0180001552.01.T01 MTR_3g030770 48.571 70 34 1 2 71 9 76 9.58e-16 73.2
MsG0180001552.01.T01 MTR_3g052920 51.429 70 32 1 2 71 9 76 1.21e-15 72.8
MsG0180001552.01.T01 MTR_4g094632 52.459 61 29 0 1 61 1 61 1.76e-15 70.9
MsG0180001552.01.T01 MTR_8g079502 61.224 49 19 0 1 49 1 49 1.96e-15 71.2
MsG0180001552.01.T01 MTR_1g047550 61.224 49 19 0 1 49 1 49 2.63e-15 70.9
MsG0180001552.01.T01 MTR_2g030740 48.571 70 34 1 2 71 9 76 1.00e-14 70.5
MsG0180001552.01.T01 MTR_4g108720 45.070 71 39 0 1 71 1 71 1.02e-14 71.6
MsG0180001552.01.T01 MTR_1g054265 41.772 79 44 1 1 79 1 77 1.15e-14 68.9
MsG0180001552.01.T01 MTR_1g105910 47.143 70 35 1 2 71 9 76 1.83e-14 69.7
MsG0180001552.01.T01 MTR_2g085250 50.000 70 33 1 2 71 9 76 1.87e-14 69.7
MsG0180001552.01.T01 MTR_1g041615 41.667 84 47 1 13 94 17 100 1.87e-14 67.8
MsG0180001552.01.T01 MTR_2g085280 50.000 70 33 1 2 71 9 76 1.97e-14 69.7
MsG0180001552.01.T01 MTR_8g043650 47.143 70 35 1 2 71 9 76 2.09e-14 69.7
MsG0180001552.01.T01 MTR_3g052870 47.143 70 35 1 2 71 9 76 2.28e-14 69.3
MsG0180001552.01.T01 MTR_1g063160 57.143 49 21 0 1 49 1 49 2.32e-14 68.6
MsG0180001552.01.T01 MTR_4g131030 61.224 49 19 0 1 49 1 49 2.36e-14 68.9
MsG0180001552.01.T01 MTR_1g105920 47.143 70 35 1 2 71 9 76 3.10e-14 69.3
MsG0180001552.01.T01 MTR_8g051580 54.717 53 24 0 1 53 1 53 3.16e-14 68.2
MsG0180001552.01.T01 MTR_1g108580 45.714 70 36 1 2 71 9 76 3.44e-14 68.9
MsG0180001552.01.T01 MTR_5g045560 47.887 71 35 1 1 71 8 76 3.58e-14 68.9
MsG0180001552.01.T01 MTR_1g077360 50.000 70 33 1 2 71 9 76 4.17e-14 68.9
MsG0180001552.01.T01 MTR_1g012570 48.571 70 34 1 2 71 9 76 7.20e-14 68.2
MsG0180001552.01.T01 MTR_2g105290 44.000 75 40 1 1 75 11 83 9.65e-14 66.6
MsG0180001552.01.T01 MTR_1g106070 47.143 70 35 1 2 71 9 76 9.89e-14 67.0
MsG0180001552.01.T01 MTR_4g094638 39.437 71 41 1 1 71 1 69 1.05e-13 66.6
MsG0180001552.01.T01 MTR_5g053390 29.814 161 77 4 2 159 9 136 1.52e-13 67.4
MsG0180001552.01.T01 MTR_5g055100 48.571 70 34 1 2 71 9 76 1.65e-13 67.0
MsG0180001552.01.T01 MTR_1g075600 48.571 70 34 1 2 71 9 76 1.83e-13 67.0
MsG0180001552.01.T01 MTR_0121s0080 45.833 72 35 2 2 71 7 76 7.12e-13 65.5
MsG0180001552.01.T01 MTR_8g046350 43.662 71 38 1 1 71 1 69 1.31e-12 63.5
MsG0180001552.01.T01 MTR_3g030780 44.286 70 37 1 2 71 9 76 1.47e-12 62.4
MsG0180001552.01.T01 MTR_5g041650 37.662 77 48 0 1 77 38 114 1.47e-12 65.9
MsG0180001552.01.T01 MTR_3g080940 45.070 71 37 1 1 71 8 76 1.48e-12 63.9
MsG0180001552.01.T01 MTR_0121s0100 44.286 70 37 1 2 71 9 76 2.92e-12 61.6
MsG0180001552.01.T01 MTR_7g028448 47.368 57 28 1 15 71 25 79 1.12e-11 60.8
MsG0180001552.01.T01 MTR_4g036915 47.368 57 28 1 15 71 25 79 1.12e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001552.01.T01 AT5G23260 46.328 177 67 3 1 155 1 171 1.24e-45 151
MsG0180001552.01.T01 AT5G23260 51.316 152 66 2 1 150 17 162 1.59e-45 151
MsG0180001552.01.T01 AT5G23260 52.113 142 62 1 1 142 1 136 3.60e-45 150
MsG0180001552.01.T01 AT5G23260 52.113 142 62 1 1 142 17 152 6.34e-45 150
MsG0180001552.01.T01 AT5G60910 37.654 162 85 4 1 154 1 154 1.52e-32 117
MsG0180001552.01.T01 AT3G57390 45.517 145 71 3 1 140 1 142 3.89e-32 116
MsG0180001552.01.T01 AT3G57390 45.517 145 71 3 1 140 1 142 8.69e-32 116
MsG0180001552.01.T01 AT3G57230 43.262 141 72 4 1 140 1 134 1.22e-31 112
MsG0180001552.01.T01 AT1G26310 43.972 141 75 3 1 140 1 138 1.58e-31 115
MsG0180001552.01.T01 AT3G57230 43.262 141 72 4 1 140 1 134 1.75e-30 112
MsG0180001552.01.T01 AT3G57230 43.262 141 72 4 1 140 1 134 1.75e-30 112
MsG0180001552.01.T01 AT5G20240 37.762 143 79 2 1 142 1 134 1.78e-30 109
MsG0180001552.01.T01 AT1G69120 40.278 144 74 3 1 140 1 136 3.07e-30 111
MsG0180001552.01.T01 AT5G20240 37.333 150 84 2 1 149 1 141 3.86e-30 110
MsG0180001552.01.T01 AT2G14210 40.000 195 99 6 1 192 1 180 4.61e-30 110
MsG0180001552.01.T01 AT2G14210 40.000 195 99 6 1 192 1 180 6.23e-30 110
MsG0180001552.01.T01 AT1G69120 40.278 144 74 3 1 140 1 136 7.42e-30 110
MsG0180001552.01.T01 AT4G37940 42.553 141 73 3 1 140 1 134 1.11e-29 108
MsG0180001552.01.T01 AT4G37940 42.254 142 72 4 1 140 1 134 2.88e-29 108
MsG0180001552.01.T01 AT4G37940 42.254 142 72 4 1 140 1 134 3.31e-29 108
MsG0180001552.01.T01 AT5G62165 40.110 182 99 6 1 178 1 176 1.28e-28 106
MsG0180001552.01.T01 AT5G62165 40.110 182 99 6 1 178 1 176 1.28e-28 106
MsG0180001552.01.T01 AT5G62165 40.110 182 99 6 1 178 1 176 1.28e-28 106
MsG0180001552.01.T01 AT5G51870 44.286 140 74 3 1 140 1 136 1.87e-28 105
MsG0180001552.01.T01 AT5G62165 44.595 148 75 4 1 146 1 143 2.31e-28 104
MsG0180001552.01.T01 AT5G62165 44.595 148 75 4 1 146 1 143 2.31e-28 104
MsG0180001552.01.T01 AT5G62165 44.595 148 75 4 1 146 1 143 2.31e-28 104
MsG0180001552.01.T01 AT5G62165 41.875 160 84 4 1 156 1 155 2.92e-28 105
MsG0180001552.01.T01 AT5G62165 41.875 160 84 4 1 156 1 155 2.92e-28 105
MsG0180001552.01.T01 AT4G09960 39.310 145 77 3 1 142 1 137 4.08e-28 105
MsG0180001552.01.T01 AT5G51870 44.286 140 74 3 1 140 24 159 4.60e-28 104
MsG0180001552.01.T01 AT5G62165 44.366 142 74 3 1 142 1 137 5.29e-28 103
MsG0180001552.01.T01 AT5G62165 44.366 142 74 3 1 142 1 137 5.29e-28 103
MsG0180001552.01.T01 AT5G62165 44.366 142 74 3 1 142 1 137 5.29e-28 103
MsG0180001552.01.T01 AT5G62165 44.366 142 74 3 1 142 1 137 5.29e-28 103
MsG0180001552.01.T01 AT5G62165 44.366 142 74 3 1 142 1 137 5.29e-28 103
MsG0180001552.01.T01 AT5G51870 44.286 140 74 3 1 140 1 136 6.43e-28 105
MsG0180001552.01.T01 AT5G51870 44.286 140 74 3 1 140 11 146 6.69e-28 105
MsG0180001552.01.T01 AT4G09960 39.310 145 77 3 1 142 1 137 6.91e-28 105
MsG0180001552.01.T01 AT5G51870 44.286 140 74 3 1 140 1 136 7.02e-28 104
MsG0180001552.01.T01 AT4G09960 39.310 145 77 3 1 142 2 138 7.54e-28 105
MsG0180001552.01.T01 AT4G09960 38.710 155 80 4 1 148 11 157 8.64e-28 105
MsG0180001552.01.T01 AT3G02310 40.426 141 78 3 1 140 1 136 1.62e-27 103
MsG0180001552.01.T01 AT2G03710 39.286 140 81 1 1 140 1 136 1.98e-27 104
MsG0180001552.01.T01 AT2G03710 39.286 140 81 1 1 140 1 136 2.06e-27 104
MsG0180001552.01.T01 AT4G09960 39.310 145 77 3 1 142 27 163 2.25e-27 104
MsG0180001552.01.T01 AT2G03710 38.571 140 82 1 1 140 1 136 2.32e-27 102
MsG0180001552.01.T01 AT1G24260 39.456 147 87 2 1 147 1 145 2.57e-27 103
MsG0180001552.01.T01 AT1G24260 39.456 147 87 2 1 147 1 145 4.39e-27 103
MsG0180001552.01.T01 AT3G02310 40.426 141 78 3 1 140 1 136 5.66e-27 103
MsG0180001552.01.T01 AT4G09960 38.710 155 80 4 1 148 96 242 5.99e-27 105
MsG0180001552.01.T01 AT5G62165 57.609 92 36 2 1 92 1 89 1.30e-26 98.6
MsG0180001552.01.T01 AT5G15800 39.716 141 79 3 1 140 1 136 1.39e-26 102
MsG0180001552.01.T01 AT1G24260 39.744 156 73 5 1 147 1 144 1.79e-26 102
MsG0180001552.01.T01 AT5G15800 39.716 141 79 3 1 140 1 136 2.28e-26 102
MsG0180001552.01.T01 AT3G30260 41.379 145 75 4 1 142 1 138 2.46e-26 101
MsG0180001552.01.T01 AT2G42830 37.908 153 84 4 1 148 16 162 2.68e-26 101
MsG0180001552.01.T01 AT2G42830 37.908 153 84 4 1 148 16 162 2.98e-26 101
MsG0180001552.01.T01 AT1G31140 41.429 140 80 1 1 140 1 138 4.37e-26 100
MsG0180001552.01.T01 AT3G58780 36.364 143 84 3 1 142 16 152 5.55e-26 100
MsG0180001552.01.T01 AT4G22950 38.732 142 81 2 1 142 1 136 5.73e-26 98.6
MsG0180001552.01.T01 AT3G58780 36.364 143 84 3 1 142 22 158 5.95e-26 100
MsG0180001552.01.T01 AT4G18960 38.732 142 80 3 2 142 18 153 6.98e-26 100
MsG0180001552.01.T01 AT3G61120 40.132 152 70 4 1 145 1 138 7.80e-26 100
MsG0180001552.01.T01 AT4G22950 38.732 142 81 2 1 142 1 136 7.97e-26 99.8
MsG0180001552.01.T01 AT4G22950 38.732 142 81 2 1 142 1 136 7.97e-26 99.8
MsG0180001552.01.T01 AT4G11880 39.437 142 81 2 1 142 1 137 1.07e-25 98.2
MsG0180001552.01.T01 AT4G11880 39.437 142 81 2 1 142 1 137 1.07e-25 98.2
MsG0180001552.01.T01 AT1G31140 39.583 144 75 2 1 140 1 136 1.46e-25 99.0
MsG0180001552.01.T01 AT4G11880 39.437 142 81 2 1 142 1 137 1.51e-25 99.0
MsG0180001552.01.T01 AT4G11880 39.437 142 81 2 1 142 1 137 1.51e-25 99.0
MsG0180001552.01.T01 AT3G58780 36.364 143 84 3 1 142 16 152 1.52e-25 100
MsG0180001552.01.T01 AT2G45660 40.141 142 76 3 1 140 1 135 1.81e-25 97.1
MsG0180001552.01.T01 AT5G13790 37.079 178 91 6 1 170 1 165 5.13e-25 98.6
MsG0180001552.01.T01 AT2G45660 40.141 142 76 3 1 140 1 135 5.41e-25 97.4
MsG0180001552.01.T01 AT5G13790 37.079 178 94 6 1 170 1 168 7.28e-25 98.2
MsG0180001552.01.T01 AT2G45650 39.007 141 80 2 1 141 1 135 7.80e-25 97.8
MsG0180001552.01.T01 AT5G51860 40.690 145 72 4 1 140 1 136 3.07e-24 95.1
MsG0180001552.01.T01 AT5G51860 40.690 145 72 4 1 140 1 136 5.33e-24 94.7
MsG0180001552.01.T01 AT2G22540 37.908 153 68 4 1 142 1 137 9.80e-24 94.7
MsG0180001552.01.T01 AT2G22540 37.908 153 68 4 1 142 1 137 9.80e-24 94.7
MsG0180001552.01.T01 AT1G71692 42.623 122 65 2 1 118 1 121 2.00e-23 93.2
MsG0180001552.01.T01 AT5G10140 36.879 141 77 3 1 141 1 129 2.07e-23 92.0
MsG0180001552.01.T01 AT5G10140 36.879 141 77 3 1 141 1 129 2.31e-23 92.4
MsG0180001552.01.T01 AT3G54340 37.415 147 82 2 1 145 1 139 2.60e-23 93.2
MsG0180001552.01.T01 AT5G10140 36.879 141 77 3 1 141 1 129 2.65e-23 92.4
MsG0180001552.01.T01 AT5G10140 36.879 141 77 3 1 141 1 129 3.81e-23 91.7
MsG0180001552.01.T01 AT2G22630 41.667 144 70 4 1 140 1 134 5.52e-23 92.4
MsG0180001552.01.T01 AT2G22630 41.667 144 70 4 1 140 1 134 5.52e-23 92.4
MsG0180001552.01.T01 AT3G58780 34.266 143 80 3 1 142 16 145 7.06e-23 92.4
MsG0180001552.01.T01 AT4G24540 39.310 145 77 3 1 142 1 137 8.04e-22 89.4
MsG0180001552.01.T01 AT3G58780 62.295 61 23 0 1 61 16 76 1.08e-21 90.1
MsG0180001552.01.T01 AT5G65050 54.167 72 32 1 1 72 1 71 2.48e-21 87.0
MsG0180001552.01.T01 AT5G65070 54.167 72 32 1 1 72 1 71 2.53e-21 85.9
MsG0180001552.01.T01 AT5G65070 54.167 72 32 1 1 72 1 71 5.33e-21 86.7
MsG0180001552.01.T01 AT5G65050 54.167 72 32 1 1 72 1 71 5.61e-21 86.3
MsG0180001552.01.T01 AT5G65050 54.167 72 32 1 1 72 1 71 5.83e-21 85.9
MsG0180001552.01.T01 AT5G65050 54.167 72 32 1 1 72 1 71 5.91e-21 85.9
MsG0180001552.01.T01 AT5G65070 45.745 94 44 2 1 88 1 93 1.09e-20 85.9
MsG0180001552.01.T01 AT5G65070 45.745 94 44 2 1 88 1 93 1.13e-20 86.3
MsG0180001552.01.T01 AT5G65060 54.167 72 32 1 1 72 1 71 3.90e-20 84.0
MsG0180001552.01.T01 AT5G65060 54.167 72 32 1 1 72 1 71 4.59e-20 83.6
MsG0180001552.01.T01 AT5G65060 54.167 72 32 1 1 72 1 71 4.72e-20 84.0
MsG0180001552.01.T01 AT2G22540 36.986 146 74 3 1 142 1 132 4.81e-20 84.7
MsG0180001552.01.T01 AT1G77980 54.930 71 31 1 1 71 1 70 2.70e-19 84.3
MsG0180001552.01.T01 AT1G22130 54.930 71 31 1 1 71 1 70 4.94e-19 83.6
MsG0180001552.01.T01 AT5G65070 57.627 59 25 0 1 59 1 59 2.08e-18 80.5
MsG0180001552.01.T01 AT5G65080 51.389 72 34 1 1 72 8 78 4.80e-18 78.6
MsG0180001552.01.T01 AT2G34440 45.882 85 36 2 1 85 1 75 1.51e-17 76.6
MsG0180001552.01.T01 AT2G03060 45.333 75 41 0 1 75 1 75 1.06e-16 77.4
MsG0180001552.01.T01 AT2G03060 45.333 75 41 0 1 75 1 75 1.06e-16 77.4
MsG0180001552.01.T01 AT2G03060 45.333 75 41 0 1 75 1 75 1.06e-16 77.4
MsG0180001552.01.T01 AT2G03060 45.333 75 41 0 1 75 1 75 1.38e-16 77.4
MsG0180001552.01.T01 AT5G65080 59.259 54 22 0 1 54 8 61 1.85e-16 74.7
MsG0180001552.01.T01 AT1G77950 46.479 71 37 1 1 71 1 70 4.28e-16 74.7
MsG0180001552.01.T01 AT1G77950 46.479 71 37 1 1 71 1 70 4.28e-16 74.7
MsG0180001552.01.T01 AT1G77950 46.479 71 37 1 1 71 1 70 4.28e-16 74.7
MsG0180001552.01.T01 AT1G77950 46.479 71 37 1 1 71 1 70 4.28e-16 74.7
MsG0180001552.01.T01 AT1G72350 52.778 72 30 1 2 73 43 110 5.41e-16 73.9
MsG0180001552.01.T01 AT1G77080 52.778 72 33 1 1 72 1 71 2.05e-15 71.2
MsG0180001552.01.T01 AT1G77080 52.778 72 33 1 1 72 1 71 2.17e-15 71.2
MsG0180001552.01.T01 AT3G66656 47.222 72 36 1 1 72 1 70 2.21e-15 71.2
MsG0180001552.01.T01 AT1G77080 52.778 72 33 1 1 72 1 71 3.23e-15 71.2
MsG0180001552.01.T01 AT1G77080 52.778 72 33 1 1 72 1 71 6.20e-15 70.9
MsG0180001552.01.T01 AT4G37435 45.070 71 38 1 1 71 1 70 4.27e-14 67.8
MsG0180001552.01.T01 AT1G18750 38.667 75 46 0 1 75 1 75 4.59e-14 70.1
MsG0180001552.01.T01 AT1G18750 38.667 75 46 0 1 75 1 75 4.83e-14 70.1
MsG0180001552.01.T01 AT1G18750 38.667 75 46 0 1 75 1 75 4.90e-14 70.1
MsG0180001552.01.T01 AT1G77080 52.239 67 28 1 1 67 1 63 9.43e-14 66.2
MsG0180001552.01.T01 AT1G01530 56.604 53 23 0 1 53 6 58 1.36e-13 67.8
MsG0180001552.01.T01 AT4G36590 39.080 87 51 1 2 88 7 91 2.16e-13 67.0
MsG0180001552.01.T01 AT1G77080 52.239 67 28 1 1 67 1 63 2.36e-13 65.9
MsG0180001552.01.T01 AT5G60440 42.857 70 38 1 2 71 7 74 7.88e-13 66.2
MsG0180001552.01.T01 AT1G69540 43.662 71 39 1 1 71 1 70 8.78e-13 66.2
MsG0180001552.01.T01 AT1G69540 42.466 73 41 1 1 73 1 72 1.04e-12 66.2
MsG0180001552.01.T01 AT2G24840 45.070 71 37 1 1 71 62 130 1.25e-12 65.1
MsG0180001552.01.T01 AT1G65360 47.368 57 30 0 1 57 6 62 9.13e-12 62.4

Find 33 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAGTCTTCGTCTTGAAT+TGG 0.322127 1:+23154263 MsG0180001552.01.T01:CDS
TCTCATACCTCTCAATGATT+TGG 0.342200 1:-23153969 None:intergenic
TAGTGGTATCAGAGCAATAC+TGG 0.345689 1:-23153008 None:intergenic
AGCTGAAGATAGGGATTAAC+AGG 0.354544 1:-23155345 None:intergenic
CAATAATCCAGTTCTTCTCT+TGG 0.370345 1:-23152908 None:intergenic
TTGAGGATCAACCTCTTAGT+AGG 0.377460 1:+23155304 MsG0180001552.01.T01:CDS
AAGTACAGGTAAACGCATTA+TGG 0.385281 1:+23153993 MsG0180001552.01.T01:CDS
TGGCTGACCAAGCTGAAGAT+AGG 0.388414 1:-23155355 None:intergenic
TTGGGAATTCAGCGCTATCT+TGG 0.409724 1:+23154282 MsG0180001552.01.T01:CDS
GTGTTATGTGAAGCTCAAAT+TGG 0.410623 1:+23152952 MsG0180001552.01.T01:CDS
GAAAGTCTTCGTCTTGAATT+GGG 0.415887 1:+23154264 MsG0180001552.01.T01:CDS
TGACATGGCAATGCTGAGGC+AGG 0.482489 1:+23154242 MsG0180001552.01.T01:CDS
GAGAGGTATGAGAGAAGTAC+AGG 0.486490 1:+23153979 MsG0180001552.01.T01:CDS
ATGATCATCAGATTCATCCT+AGG 0.489510 1:+23154025 MsG0180001552.01.T01:CDS
GCACTGATGGAAAACAAAGC+TGG 0.499873 1:+23155261 MsG0180001552.01.T01:CDS
TAACAGGTGCAGCAAGTTGA+AGG 0.500152 1:-23155329 None:intergenic
TCAGGAGCACAAGGCACTGA+TGG 0.520612 1:+23155248 MsG0180001552.01.T01:intron
GCCTCAGCATTGCCATGTCA+TGG 0.520651 1:-23154239 None:intergenic
GGCTGACCAAGCTGAAGATA+GGG 0.525867 1:-23155354 None:intergenic
CACTGATGGAAAACAAAGCT+GGG 0.526343 1:+23155262 MsG0180001552.01.T01:CDS
TTTGTTCAAGAGATGGGGCG+TGG 0.534543 1:+23152832 None:intergenic
GATGGAAAACAAAGCTGGGA+TGG 0.547746 1:+23155266 MsG0180001552.01.T01:CDS
GTTAATCCCTATCTTCAGCT+TGG 0.548067 1:+23155348 MsG0180001552.01.T01:CDS
TTTAATTGATCAGGAGCACA+AGG 0.577798 1:+23155239 MsG0180001552.01.T01:intron
TGATCATCAGATTCATCCTA+GGG 0.590898 1:+23154026 MsG0180001552.01.T01:CDS
AGTTGAAGGATCCTACTAAG+AGG 0.593625 1:-23155315 None:intergenic
AATAGAAATGTTCCATGACA+TGG 0.596685 1:+23154227 MsG0180001552.01.T01:CDS
AGTGGTATCAGAGCAATACT+GGG 0.631927 1:-23153007 None:intergenic
AGTATTGCTCTGATACCACT+AGG 0.636091 1:+23153010 MsG0180001552.01.T01:CDS
GGATGGACCAAATCATTGAG+AGG 0.654290 1:+23153962 MsG0180001552.01.T01:intron
TTAATCTTTAGGGCTGATCG+AGG 0.658538 1:-23155410 None:intergenic
TCCATGACATGGCAATGCTG+AGG 0.717602 1:+23154238 MsG0180001552.01.T01:CDS
AGATTCAAAATAAAACAACA+AGG 0.723003 1:+23152872 MsG0180001552.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATAAAACAAAATGA+AGG - Chr1:23153048-23153067 None:intergenic 10.0%
!! GTAAAATATTTGTTTATTAT+AGG + Chr1:23154203-23154222 MsG0180001552.01.T01:intron 10.0%
!!! AGTTTAATTTTTTTTTTTGA+AGG - Chr1:23155135-23155154 None:intergenic 10.0%
!!! ATAATAATGAAAATTTTACT+TGG - Chr1:23154768-23154787 None:intergenic 10.0%
!!! TAAATTTTCTGATTTATTTT+GGG + Chr1:23153143-23153162 MsG0180001552.01.T01:intron 10.0%
!! CAAACAAATTTACAATTATA+GGG - Chr1:23153080-23153099 None:intergenic 15.0%
!! GAAAATGAAAGTTTAATAAA+AGG - Chr1:23154490-23154509 None:intergenic 15.0%
!! GATGGAATATTAATTAATTT+GGG + Chr1:23155209-23155228 MsG0180001552.01.T01:intron 15.0%
!! TAAAAATGTAAATGAAAAGT+AGG - Chr1:23153720-23153739 None:intergenic 15.0%
!! TCAAACAAATTTACAATTAT+AGG - Chr1:23153081-23153100 None:intergenic 15.0%
!! TGATGGAATATTAATTAATT+TGG + Chr1:23155208-23155227 MsG0180001552.01.T01:intron 15.0%
!!! GTAAATTTTCTGATTTATTT+TGG + Chr1:23153142-23153161 MsG0180001552.01.T01:intron 15.0%
!! AAAATATCAATTTATCCAAC+TGG + Chr1:23155008-23155027 MsG0180001552.01.T01:intron 20.0%
!! AAATATCAATTTATCCAACT+GGG + Chr1:23155009-23155028 MsG0180001552.01.T01:intron 20.0%
!! AAATGATCAATGATAAAGTT+GGG - Chr1:23154925-23154944 None:intergenic 20.0%
!! AGATTATAATCTTGAAAAAC+TGG - Chr1:23155378-23155397 None:intergenic 20.0%
!! AGATTCAAAATAAAACAACA+AGG + Chr1:23152872-23152891 MsG0180001552.01.T01:CDS 20.0%
!! ATATACTATCAATGAAACAT+AGG + Chr1:23154591-23154610 MsG0180001552.01.T01:intron 20.0%
!! TAAATGATCAATGATAAAGT+TGG - Chr1:23154926-23154945 None:intergenic 20.0%
!! TAATAAAGACTCCATATAAA+AGG - Chr1:23154648-23154667 None:intergenic 20.0%
!! TATACTATCAATGAAACATA+GGG + Chr1:23154592-23154611 MsG0180001552.01.T01:intron 20.0%
!! TGATGATTTCATGTTATAAT+TGG + Chr1:23153594-23153613 MsG0180001552.01.T01:intron 20.0%
!!! AAAAATAGTGTGTTTCTTTT+AGG + Chr1:23153227-23153246 MsG0180001552.01.T01:intron 20.0%
!!! AAAATAGTGTGTTTCTTTTA+GGG + Chr1:23153228-23153247 MsG0180001552.01.T01:intron 20.0%
!!! ATAAATCATTTATGGCTTTA+TGG - Chr1:23153415-23153434 None:intergenic 20.0%
!!! ATATATAGTTTTTGTCGTAT+AGG + Chr1:23154522-23154541 MsG0180001552.01.T01:intron 20.0%
!!! ATTAATTTTGATTAACCTGA+CGG - Chr1:23154448-23154467 None:intergenic 20.0%
!!! ATTTTACTTGGTAAATTACA+AGG - Chr1:23154756-23154775 None:intergenic 20.0%
!!! GCTAATGTAATTAATTTTGT+TGG + Chr1:23154181-23154200 MsG0180001552.01.T01:intron 20.0%
!!! TAATGAAGTGAAATTTTTTC+AGG + Chr1:23153941-23153960 MsG0180001552.01.T01:intron 20.0%
!!! TATGATATTATTTTCTGTCA+TGG + Chr1:23153900-23153919 MsG0180001552.01.T01:intron 20.0%
!!! TTGATTAATTACTTTTCTCT+GGG + Chr1:23153181-23153200 MsG0180001552.01.T01:intron 20.0%
!!! TTTGATTAATTACTTTTCTC+TGG + Chr1:23153180-23153199 MsG0180001552.01.T01:intron 20.0%
! AAAAAATTAGCATATGAGTG+AGG - Chr1:23154058-23154077 None:intergenic 25.0%
! AAGCCATAAATGATTTATTC+TGG + Chr1:23153417-23153436 MsG0180001552.01.T01:intron 25.0%
! AATCCAGATTCAAATTCAAA+AGG - Chr1:23155068-23155087 None:intergenic 25.0%
! ACAAAAACAGTTTAACACTT+TGG - Chr1:23153849-23153868 None:intergenic 25.0%
! ATTCCATCAAGTTAATTGAT+TGG - Chr1:23155197-23155216 None:intergenic 25.0%
! CAAAAAAAAGATTAACCTGA+CGG - Chr1:23154389-23154408 None:intergenic 25.0%
! CAAAGTGAAGTTATATATTC+TGG + Chr1:23153324-23153343 MsG0180001552.01.T01:intron 25.0%
! CAACAACATATACACATTTA+TGG - Chr1:23154961-23154980 None:intergenic 25.0%
!! ATTGATTGGTCACATTAATT+AGG - Chr1:23155183-23155202 None:intergenic 25.0%
!! GGCATTTAATTTAATTGATC+AGG + Chr1:23155230-23155249 MsG0180001552.01.T01:intron 25.0%
!!! CTTGTGTTGTTATTTAACTT+TGG + Chr1:23153803-23153822 MsG0180001552.01.T01:intron 25.0%
AAGATCAAAATGAGAGTTTG+TGG + Chr1:23153765-23153784 MsG0180001552.01.T01:intron 30.0%
AAGGTGGTAATAACATTAGT+AGG - Chr1:23155049-23155068 None:intergenic 30.0%
AATAGAAATGTTCCATGACA+TGG + Chr1:23154227-23154246 MsG0180001552.01.T01:CDS 30.0%
AGGACATAAAGTGAAGTTAT+TGG + Chr1:23153496-23153515 MsG0180001552.01.T01:intron 30.0%
AGGATAAATATCATACCTAG+TGG - Chr1:23153028-23153047 None:intergenic 30.0%
AGTAAATATTCTTACCCAGT+TGG - Chr1:23155026-23155045 None:intergenic 30.0%
ATCAATGAAACATAGGGTTT+GGG + Chr1:23154598-23154617 MsG0180001552.01.T01:intron 30.0%
GCACCAGAATAAATCATTTA+TGG - Chr1:23153423-23153442 None:intergenic 30.0%
TATCAATGAAACATAGGGTT+TGG + Chr1:23154597-23154616 MsG0180001552.01.T01:intron 30.0%
TCTTTCATTCGATCAAACAA+AGG + Chr1:23153521-23153540 MsG0180001552.01.T01:intron 30.0%
TGTATATGTTGTTGTGATTC+AGG + Chr1:23154967-23154986 MsG0180001552.01.T01:intron 30.0%
! GTGTCAATAATTTGTGTTGA+AGG - Chr1:23154791-23154810 None:intergenic 30.0%
! TGACCAATCAATTAACTTGA+TGG + Chr1:23155191-23155210 MsG0180001552.01.T01:intron 30.0%
!! AAGAGGTGTAACCTTTTATA+TGG + Chr1:23154634-23154653 MsG0180001552.01.T01:intron 30.0%
!!! CGTCAGGTTAATCTTTTTTT+TGG + Chr1:23154387-23154406 MsG0180001552.01.T01:intron 30.0%
!!! GAAGTGAAATTTTTTCAGGA+TGG + Chr1:23153945-23153964 MsG0180001552.01.T01:intron 30.0%
!!! TTCTCTTTTTTGTCATGACA+AGG + Chr1:23153476-23153495 MsG0180001552.01.T01:intron 30.0%
AACTTGAGTGTGTTAAGACA+TGG + Chr1:23153550-23153569 MsG0180001552.01.T01:intron 35.0%
AAGTACAGGTAAACGCATTA+TGG + Chr1:23153993-23154012 MsG0180001552.01.T01:CDS 35.0%
ATGATCATCAGATTCATCCT+AGG + Chr1:23154025-23154044 MsG0180001552.01.T01:CDS 35.0%
ATGTCTTAACACACTCAAGT+TGG - Chr1:23153551-23153570 None:intergenic 35.0%
CAATAATCCAGTTCTTCTCT+TGG - Chr1:23152911-23152930 None:intergenic 35.0%
CCAGATTCAAATTCAAAAGG+TGG - Chr1:23155065-23155084 None:intergenic 35.0%
GAAAGTCTTCGTCTTGAATT+GGG + Chr1:23154264-23154283 MsG0180001552.01.T01:CDS 35.0%
GTGTTATGTGAAGCTCAAAT+TGG + Chr1:23152952-23152971 MsG0180001552.01.T01:CDS 35.0%
TCTCATACCTCTCAATGATT+TGG - Chr1:23153972-23153991 None:intergenic 35.0%
TGATCATCAGATTCATCCTA+GGG + Chr1:23154026-23154045 MsG0180001552.01.T01:CDS 35.0%
TGGGTGTATTAATCTACAAG+AGG + Chr1:23154617-23154636 MsG0180001552.01.T01:intron 35.0%
! ACATTTTCCAAGAGAAGAAC+TGG + Chr1:23152901-23152920 MsG0180001552.01.T01:CDS 35.0%
! CCACCTTTTGAATTTGAATC+TGG + Chr1:23155062-23155081 MsG0180001552.01.T01:intron 35.0%
! TTTAATTGATCAGGAGCACA+AGG + Chr1:23155239-23155258 MsG0180001552.01.T01:intron 35.0%
!!! GGATCAGTTTGCATTTTTTG+AGG + Chr1:23155287-23155306 MsG0180001552.01.T01:CDS 35.0%
AATGGAGAATCTGAGAAGGA+AGG + Chr1:23154847-23154866 MsG0180001552.01.T01:intron 40.0%
AGCAAATGGAGAATCTGAGA+AGG + Chr1:23154843-23154862 MsG0180001552.01.T01:intron 40.0%
AGCTGAAGATAGGGATTAAC+AGG - Chr1:23155348-23155367 None:intergenic 40.0%
AGTATTGCTCTGATACCACT+AGG + Chr1:23153010-23153029 MsG0180001552.01.T01:CDS 40.0%
AGTGGTATCAGAGCAATACT+GGG - Chr1:23153010-23153029 None:intergenic 40.0%
AGTTGAAGGATCCTACTAAG+AGG - Chr1:23155318-23155337 None:intergenic 40.0%
CACTGATGGAAAACAAAGCT+GGG + Chr1:23155262-23155281 MsG0180001552.01.T01:CDS 40.0%
GGAAAGTCTTCGTCTTGAAT+TGG + Chr1:23154263-23154282 MsG0180001552.01.T01:CDS 40.0%
GTTAATCCCTATCTTCAGCT+TGG + Chr1:23155348-23155367 MsG0180001552.01.T01:CDS 40.0%
TAGTGGTATCAGAGCAATAC+TGG - Chr1:23153011-23153030 None:intergenic 40.0%
TTGAGGATCAACCTCTTAGT+AGG + Chr1:23155304-23155323 MsG0180001552.01.T01:CDS 40.0%
! CTCATCATTTTCTCTAGCAC+TGG + Chr1:23152976-23152995 MsG0180001552.01.T01:CDS 40.0%
!!! TTTTTTTTGGTTACCCCGTC+AGG + Chr1:23154400-23154419 MsG0180001552.01.T01:intron 40.0%
AAACCGTCAGGTTAACCTGA+CGG - Chr1:23154418-23154437 None:intergenic 45.0%
GACGGTTAATCAAAACCGTC+AGG - Chr1:23154430-23154449 None:intergenic 45.0%
GATGGAAAACAAAGCTGGGA+TGG + Chr1:23155266-23155285 MsG0180001552.01.T01:CDS 45.0%
GGATGGACCAAATCATTGAG+AGG + Chr1:23153962-23153981 MsG0180001552.01.T01:intron 45.0%
TGAGCTCATACAGCAGCAAA+TGG + Chr1:23154829-23154848 MsG0180001552.01.T01:intron 45.0%
TGCAAAAGTTCGAAACCGTC+AGG + Chr1:23154371-23154390 MsG0180001552.01.T01:intron 45.0%
TTGGGAATTCAGCGCTATCT+TGG + Chr1:23154282-23154301 MsG0180001552.01.T01:CDS 45.0%
! GAGAGGTATGAGAGAAGTAC+AGG + Chr1:23153979-23153998 MsG0180001552.01.T01:CDS 45.0%
! GCACTGATGGAAAACAAAGC+TGG + Chr1:23155261-23155280 MsG0180001552.01.T01:CDS 45.0%
! TAACAGGTGCAGCAAGTTGA+AGG - Chr1:23155332-23155351 None:intergenic 45.0%
!!! GACGGTTTTGATTAACCGTC+AGG + Chr1:23154430-23154449 MsG0180001552.01.T01:intron 45.0%
AACCGTCAGGTTAACCTGAC+GGG - Chr1:23154417-23154436 None:intergenic 50.0%
ATGAGTGAGGCTCATACCCT+AGG - Chr1:23154045-23154064 None:intergenic 50.0%
GGCTGACCAAGCTGAAGATA+GGG - Chr1:23155357-23155376 None:intergenic 50.0%
TCCATGACATGGCAATGCTG+AGG + Chr1:23154238-23154257 MsG0180001552.01.T01:CDS 50.0%
TGGCTGACCAAGCTGAAGAT+AGG - Chr1:23155358-23155377 None:intergenic 50.0%
ACCCCGTCAGGTTAACCTGA+CGG + Chr1:23154412-23154431 MsG0180001552.01.T01:intron 55.0%
ACCGTCAGGTTAACCTGACG+GGG - Chr1:23154416-23154435 None:intergenic 55.0%
GCCTCAGCATTGCCATGTCA+TGG - Chr1:23154242-23154261 None:intergenic 55.0%
TGACATGGCAATGCTGAGGC+AGG + Chr1:23154242-23154261 MsG0180001552.01.T01:CDS 55.0%
! GACATCATGTGCTGCTCTGC+TGG + Chr1:23153625-23153644 MsG0180001552.01.T01:intron 55.0%
!! TCAGGAGCACAAGGCACTGA+TGG + Chr1:23155248-23155267 MsG0180001552.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 23152844 23155425 23152844 ID=MsG0180001552.01;Name=MsG0180001552.01
Chr1 mRNA 23152844 23155425 23152844 ID=MsG0180001552.01.T01;Parent=MsG0180001552.01;Name=MsG0180001552.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|4|0|199
Chr1 exon 23152844 23153031 23152844 ID=MsG0180001552.01.T01:exon:40419;Parent=MsG0180001552.01.T01
Chr1 exon 23153963 23154047 23153963 ID=MsG0180001552.01.T01:exon:40420;Parent=MsG0180001552.01.T01
Chr1 exon 23154225 23154377 23154225 ID=MsG0180001552.01.T01:exon:40421;Parent=MsG0180001552.01.T01
Chr1 exon 23155252 23155425 23155252 ID=MsG0180001552.01.T01:exon:40422;Parent=MsG0180001552.01.T01
Chr1 CDS 23152844 23153031 23152844 ID=MsG0180001552.01.T01:cds;Parent=MsG0180001552.01.T01
Chr1 CDS 23153963 23154047 23153963 ID=MsG0180001552.01.T01:cds;Parent=MsG0180001552.01.T01
Chr1 CDS 23154225 23154377 23154225 ID=MsG0180001552.01.T01:cds;Parent=MsG0180001552.01.T01
Chr1 CDS 23155252 23155425 23155252 ID=MsG0180001552.01.T01:cds;Parent=MsG0180001552.01.T01
Gene Sequence

>MsG0180001552.01.T01

ATGGGGCGTGGAAAGATTGAGATTAAGAAGATTCAAAATAAAACAACAAGGCAAGTAACATTTTCCAAGAGAAGAACTGGATTATTGAAGAAGACTCATGAGCTTTCTGTGTTATGTGAAGCTCAAATTGGTCTCATCATTTTCTCTAGCACTGGAAAACTCTCCCAGTATTGCTCTGATACCACTAGGATGGACCAAATCATTGAGAGGTATGAGAGAAGTACAGGTAAACGCATTATGGCTGAACATGATGATCATCAGATTCATCCTAGGGAAATAGAAATGTTCCATGACATGGCAATGCTGAGGCAGGAAAGTCTTCGTCTTGAATTGGGAATTCAGCGCTATCTTGGAGATGATATGAAGTGTTTACACTTTGATGATTTGACTAAAATTGAACATGAATTAGAGATCTCTCTTGCAAAAGAGCACAAGGCACTGATGGAAAACAAAGCTGGGATGGATCAGTTTGCATTTTTTGAGGATCAACCTCTTAGTAGGATCCTTCAACTTGCTGCACCTGTTAATCCCTATCTTCAGCTTGGTCAGCCAGTTTTTCAAGATTATAATCTCAAGACTAGTGACCTCGATCAGCCCTAA
Protein sequence

>MsG0180001552.01.T01

MGRGKIEIKKIQNKTTRQVTFSKRRTGLLKKTHELSVLCEAQIGLIIFSSTGKLSQYCSDTTRMDQIIERYERSTGKRIMAEHDDHQIHPREIEMFHDMAMLRQESLRLELGIQRYLGDDMKCLHFDDLTKIEHELEISLAKEHKALMENKAGMDQFAFFEDQPLSRILQLAAPVNPYLQLGQPVFQDYNLKTSDLDQP*