AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001598.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001598.01.T01 MTR_0365s0010 94.712 416 19 1 11 423 13 428 0.0 805
MsG0180001598.01.T01 MTR_0400s0020 94.144 222 10 1 205 423 1 222 1.39e-149 423
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001598.01.T01 AT3G19990 67.290 428 132 4 1 423 1 425 0.0 589
MsG0180001598.01.T01 AT3G19990 67.849 423 131 3 6 423 28 450 0.0 588

Find 105 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGATGTCATTGGGATAAA+AGG 0.193236 1:-23914863 MsG0180001598.01.T01:CDS
AGGATTCCCCATGAAGTATT+TGG 0.216030 1:+23914774 None:intergenic
CACTAAATGTACCAAGGTTT+TGG 0.242886 1:-23915102 MsG0180001598.01.T01:CDS
TCATGGGGAATCCTCAATTT+AGG 0.273328 1:-23914765 MsG0180001598.01.T01:CDS
GAGTTTAAAGGGAACAATTT+TGG 0.290547 1:-23915311 MsG0180001598.01.T01:CDS
CAAGGTCTTGTTCCAGTTGA+TGG 0.297823 1:-23915482 MsG0180001598.01.T01:CDS
GATGGTAGGCTTGAGTTTAA+AGG 0.304651 1:-23915323 MsG0180001598.01.T01:CDS
GGAGAAGGGGATATTTAATA+AGG 0.337948 1:-23915528 MsG0180001598.01.T01:CDS
ATTGGGATAAAAGGGTTTCT+TGG 0.340896 1:-23914854 MsG0180001598.01.T01:CDS
GGAACGGAGGATTGTGATTA+GGG 0.354156 1:+23915892 None:intergenic
AAAGGGTTTCTTGGGAAGGT+TGG 0.357316 1:-23914845 MsG0180001598.01.T01:CDS
GAGAGAGGAAGAGATATTCT+TGG 0.358254 1:-23915207 MsG0180001598.01.T01:CDS
CGGAACGGAGGATTGTGATT+AGG 0.362841 1:+23915891 None:intergenic
AGCAAGGTTAACATAGGAAT+TGG 0.373886 1:+23915739 None:intergenic
ATGGTAGGCTTGAGTTTAAA+GGG 0.389892 1:-23915322 MsG0180001598.01.T01:CDS
CCATACTCCGTGTCTCTTTG+TGG 0.392811 1:-23915782 MsG0180001598.01.T01:CDS
AGCGAGCTCGTTACGAATGA+AGG 0.394431 1:+23915937 None:intergenic
TGGAGTATGCTGAGTGGAAT+AGG 0.394596 1:+23915759 None:intergenic
TAGCGGAGGTTAAGAGGGTT+TGG 0.402607 1:+23915963 None:intergenic
CTTGGGAAGGTTGGATTGCA+TGG 0.408127 1:-23914836 MsG0180001598.01.T01:CDS
CCACAAAGAGACACGGAGTA+TGG 0.409510 1:+23915782 None:intergenic
TTGGGATAAAAGGGTTTCTT+GGG 0.409530 1:-23914853 MsG0180001598.01.T01:CDS
TGAAGGCAAAAGAGAAATCT+TGG 0.410876 1:-23914797 MsG0180001598.01.T01:CDS
TGTGATTAGGGAAGGGAGGT+TGG 0.412116 1:+23915904 None:intergenic
GGGGAAGATTGAGGAGTTGT+TGG 0.413719 1:-23915015 MsG0180001598.01.T01:CDS
TATGATTTGTGAAGAAGGAT+TGG 0.417695 1:-23915036 MsG0180001598.01.T01:CDS
TGCTTGAATGGGGATGTCAT+TGG 0.423224 1:-23914872 MsG0180001598.01.T01:CDS
ACTTGACTCAACACCACATA+TGG 0.426604 1:+23914957 None:intergenic
ATGATTTGTGAAGAAGGATT+GGG 0.431843 1:-23915035 MsG0180001598.01.T01:CDS
GGAAGGGAGGTTGGCATCGA+TGG 0.433651 1:+23915913 None:intergenic
TCCATGTTTGTGCCAACATT+CGG 0.435886 1:+23915859 None:intergenic
AGGGTTTAGCGGAGGTTAAG+AGG 0.435934 1:+23915957 None:intergenic
AAAATCAGAATTGTCTTTGA+GGG 0.436171 1:-23915558 MsG0180001598.01.T01:CDS
AATCTTGGCCAAATACTTCA+TGG 0.437070 1:-23914782 MsG0180001598.01.T01:CDS
AGTTGCAAGAGATTTGTATT+GGG 0.443766 1:-23915063 MsG0180001598.01.T01:CDS
GAGCTGTTTATAATTTGATT+CGG 0.445279 1:-23915229 MsG0180001598.01.T01:CDS
ACATATGGCTCTCCCACAAA+AGG 0.449156 1:+23914972 None:intergenic
GGTGCTGTTTGGCCTGGAAA+TGG 0.450409 1:-23915290 MsG0180001598.01.T01:CDS
TAGTTGCAAGAGATTTGTAT+TGG 0.453285 1:-23915064 MsG0180001598.01.T01:CDS
TATTTAATAAGGATGAAAGT+TGG 0.455200 1:-23915517 MsG0180001598.01.T01:CDS
ACCTCTCGTGAAGTTGTTCG+TGG 0.457601 1:-23915701 MsG0180001598.01.T01:CDS
GCTTGAATGGGGATGTCATT+GGG 0.459953 1:-23914871 MsG0180001598.01.T01:CDS
AAACCCGGCTTACCATTTCC+AGG 0.460541 1:+23915278 None:intergenic
GGGATGTCATTGGGATAAAA+GGG 0.463467 1:-23914862 MsG0180001598.01.T01:CDS
GGGTTTAGCGGAGGTTAAGA+GGG 0.464443 1:+23915958 None:intergenic
GAGAGATGAAGATATTGAGT+TGG 0.467332 1:-23915141 MsG0180001598.01.T01:CDS
CGGAGGTTAAGAGGGTTTGG+AGG 0.469678 1:+23915966 None:intergenic
CCGTTGGTGCATCCGAATGT+TGG 0.471677 1:-23915871 MsG0180001598.01.T01:CDS
TTGGTACATTTAGTGAAAAC+CGG 0.473899 1:+23915110 None:intergenic
AGAAGGATTGGGGAAGATTG+AGG 0.482682 1:-23915024 MsG0180001598.01.T01:CDS
GTTGAATTCGATTTCGAGGA+TGG 0.484918 1:-23915252 MsG0180001598.01.T01:CDS
AAATATCAACAAGGTGTTCA+AGG 0.492223 1:+23915831 None:intergenic
GTGAAGACGTGAAGCTTTCG+AGG 0.504729 1:-23915433 MsG0180001598.01.T01:CDS
TGTGGTTGAATTCGATTTCG+AGG 0.505338 1:-23915256 MsG0180001598.01.T01:CDS
AGTCAAGTTTATTTGACAAA+GGG 0.507942 1:-23914942 MsG0180001598.01.T01:CDS
ACTTTACAAGACCTAAATTG+AGG 0.508872 1:+23914754 None:intergenic
GAAGCTATGATTTGTGAAGA+AGG 0.514033 1:-23915041 MsG0180001598.01.T01:CDS
CGGAGGATTGTGATTAGGGA+AGG 0.520560 1:+23915896 None:intergenic
ATCGAATTCAACCACAAACC+CGG 0.524797 1:+23915263 None:intergenic
TGGCCTGGAAATGGTAAGCC+GGG 0.526760 1:-23915281 MsG0180001598.01.T01:CDS
ATCTTGGCCAAATACTTCAT+GGG 0.532651 1:-23914781 MsG0180001598.01.T01:CDS
AAAGTGAAGCATATTCGTAC+AGG 0.535644 1:-23915455 MsG0180001598.01.T01:CDS
TGTTTGAGAATTTCGATGGT+AGG 0.536853 1:-23915337 MsG0180001598.01.T01:CDS
AAAGATAGCAAGGTTAACAT+AGG 0.542518 1:+23915733 None:intergenic
TTGGCCTGGAAATGGTAAGC+CGG 0.547055 1:-23915282 MsG0180001598.01.T01:CDS
TTAATAAGGATGAAAGTTGG+AGG 0.548735 1:-23915514 MsG0180001598.01.T01:CDS
TTGAGGGATGCAAAGGAGAA+GGG 0.550379 1:-23915542 MsG0180001598.01.T01:CDS
ATCCCCTGCATCCAAAACCT+TGG 0.551710 1:+23915091 None:intergenic
GAGTCAAGTTTATTTGACAA+AGG 0.553131 1:-23914943 MsG0180001598.01.T01:CDS
GACAAAGGGTAGATTTGAAG+AGG 0.553281 1:-23914928 MsG0180001598.01.T01:CDS
TGATTTGTGAAGAAGGATTG+GGG 0.555276 1:-23915034 MsG0180001598.01.T01:CDS
TCCGAATGTTGGCACAAACA+TGG 0.556519 1:-23915860 MsG0180001598.01.T01:CDS
CATATGGCTCTCCCACAAAA+GGG 0.560481 1:+23914973 None:intergenic
TTTGAGGGATGCAAAGGAGA+AGG 0.562814 1:-23915543 MsG0180001598.01.T01:CDS
ATCACAATCCTCCGTTCCGT+TGG 0.563495 1:-23915887 MsG0180001598.01.T01:CDS
CCAACATTCGGATGCACCAA+CGG 0.564997 1:+23915871 None:intergenic
ACAACTTCACGAGAGGTTGA+AGG 0.570776 1:+23915707 None:intergenic
TTGAATTCGATTTCGAGGAT+GGG 0.573375 1:-23915251 MsG0180001598.01.T01:CDS
TTATAATTTGATTCGGAGAG+AGG 0.578435 1:-23915222 MsG0180001598.01.T01:CDS
ATTGTCTTTGAGGGATGCAA+AGG 0.581268 1:-23915549 MsG0180001598.01.T01:CDS
GTTACGAATGAAGGGTTTAG+CGG 0.584659 1:+23915946 None:intergenic
AGTATGGAGATTTCCAAAGA+TGG 0.588474 1:+23915798 None:intergenic
ATGTTGTTTGAGAATTTCGA+TGG 0.591984 1:-23915341 MsG0180001598.01.T01:CDS
GATAAAAGGGTTTCTTGGGA+AGG 0.592453 1:-23914849 MsG0180001598.01.T01:CDS
GCGAGCTCGTTACGAATGAA+GGG 0.594184 1:+23915938 None:intergenic
GAAATGGTAAGCCGGGTTTG+TGG 0.595506 1:-23915274 MsG0180001598.01.T01:CDS
TTGAAGGATCAAAGATAGCA+AGG 0.597008 1:+23915723 None:intergenic
GGATTGTGATTAGGGAAGGG+AGG 0.602956 1:+23915900 None:intergenic
GAAGTTGTTCGTGGACATGT+TGG 0.608364 1:-23915692 MsG0180001598.01.T01:CDS
TCTTGGCCAAATACTTCATG+GGG 0.613444 1:-23914780 MsG0180001598.01.T01:CDS
GGAGGATTGTGATTAGGGAA+GGG 0.616947 1:+23915897 None:intergenic
TGAGGGATGCAAAGGAGAAG+GGG 0.618392 1:-23915541 MsG0180001598.01.T01:CDS
ATTTCCAAAGATGGAGAATG+CGG 0.626455 1:+23915807 None:intergenic
ATTCGGATGCACCAACGGAA+CGG 0.633751 1:+23915876 None:intergenic
TCATGAATAAGAGATTGTCT+AGG 0.638163 1:+23915629 None:intergenic
AGTTGGAGGAAGAAATTGCA+AGG 0.640534 1:-23915500 MsG0180001598.01.T01:CDS
GCTGAGAAAGAAGCTGAGAG+AGG 0.642827 1:-23914906 MsG0180001598.01.T01:CDS
ACGAATGAAGGGTTTAGCGG+AGG 0.650326 1:+23915949 None:intergenic
CGGATGCACCAACGGAACGG+AGG 0.659952 1:+23915879 None:intergenic
TGATGAAGAAGAATTTGACA+TGG 0.664542 1:+23916003 None:intergenic
TCCACGAACAACTTCACGAG+AGG 0.665126 1:+23915700 None:intergenic
GTACATTTAGTGAAAACCGG+TGG 0.703845 1:+23915113 None:intergenic
AGGAATTGGAGTATGCTGAG+TGG 0.705496 1:+23915753 None:intergenic
GAATAGGCCACAAAGAGACA+CGG 0.705843 1:+23915775 None:intergenic
GAATGCGGAAAATATCAACA+AGG 0.731228 1:+23915822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAGTAAAAAGAGTTAA+TGG - Chr1:23915577-23915596 MsG0180001598.01.T01:CDS 20.0%
!! TATTTAATAAGGATGAAAGT+TGG - Chr1:23915236-23915255 MsG0180001598.01.T01:CDS 20.0%
! AAAAATCAGAATTGTCTTTG+AGG - Chr1:23915194-23915213 MsG0180001598.01.T01:CDS 25.0%
! AAAATCAGAATTGTCTTTGA+GGG - Chr1:23915195-23915214 MsG0180001598.01.T01:CDS 25.0%
! AGTCAAGTTTATTTGACAAA+GGG - Chr1:23915811-23915830 MsG0180001598.01.T01:CDS 25.0%
! GAGCTGTTTATAATTTGATT+CGG - Chr1:23915524-23915543 MsG0180001598.01.T01:CDS 25.0%
!!! TGTTTTTGTTATGATGACTA+TGG - Chr1:23915354-23915373 MsG0180001598.01.T01:CDS 25.0%
AAAGATAGCAAGGTTAACAT+AGG + Chr1:23915023-23915042 None:intergenic 30.0%
ACTTTACAAGACCTAAATTG+AGG + Chr1:23916002-23916021 None:intergenic 30.0%
AGTTGCAAGAGATTTGTATT+GGG - Chr1:23915690-23915709 MsG0180001598.01.T01:CDS 30.0%
GAGTCAAGTTTATTTGACAA+AGG - Chr1:23915810-23915829 MsG0180001598.01.T01:CDS 30.0%
TAGTTGCAAGAGATTTGTAT+TGG - Chr1:23915689-23915708 MsG0180001598.01.T01:CDS 30.0%
TCATGAATAAGAGATTGTCT+AGG + Chr1:23915127-23915146 None:intergenic 30.0%
TTAATAAGGATGAAAGTTGG+AGG - Chr1:23915239-23915258 MsG0180001598.01.T01:CDS 30.0%
TTGGTACATTTAGTGAAAAC+CGG + Chr1:23915646-23915665 None:intergenic 30.0%
! AAATATCAACAAGGTGTTCA+AGG + Chr1:23914925-23914944 None:intergenic 30.0%
! ATGATTTGTGAAGAAGGATT+GGG - Chr1:23915718-23915737 MsG0180001598.01.T01:CDS 30.0%
! ATGTTGTTTGAGAATTTCGA+TGG - Chr1:23915412-23915431 MsG0180001598.01.T01:CDS 30.0%
! ATTGAGAAAAACCCTTTTGT+GGG - Chr1:23915769-23915788 MsG0180001598.01.T01:CDS 30.0%
! GAGTTTAAAGGGAACAATTT+TGG - Chr1:23915442-23915461 MsG0180001598.01.T01:CDS 30.0%
! GATTTTTGTGATCAGCTTTT+TGG - Chr1:23915379-23915398 MsG0180001598.01.T01:CDS 30.0%
! TATGATTTGTGAAGAAGGAT+TGG - Chr1:23915717-23915736 MsG0180001598.01.T01:CDS 30.0%
! TATTGAGAAAAACCCTTTTG+TGG - Chr1:23915768-23915787 MsG0180001598.01.T01:CDS 30.0%
!! ATTGACTCTTTTGCTTGAAT+GGG - Chr1:23915870-23915889 MsG0180001598.01.T01:CDS 30.0%
!! TCTTTTTCACTACTCTGATA+AGG - Chr1:23915153-23915172 MsG0180001598.01.T01:CDS 30.0%
!! TTATAATTTGATTCGGAGAG+AGG - Chr1:23915531-23915550 MsG0180001598.01.T01:CDS 30.0%
!!! GACTAGAGTTTTGTTAATGA+AGG - Chr1:23915939-23915958 MsG0180001598.01.T01:CDS 30.0%
AAAGTGAAGCATATTCGTAC+AGG - Chr1:23915298-23915317 MsG0180001598.01.T01:CDS 35.0%
AATCTTGGCCAAATACTTCA+TGG - Chr1:23915971-23915990 MsG0180001598.01.T01:CDS 35.0%
AGCAAGGTTAACATAGGAAT+TGG + Chr1:23915017-23915036 None:intergenic 35.0%
AGTATGGAGATTTCCAAAGA+TGG + Chr1:23914958-23914977 None:intergenic 35.0%
ATCTTGGCCAAATACTTCAT+GGG - Chr1:23915972-23915991 MsG0180001598.01.T01:CDS 35.0%
ATGGTAGGCTTGAGTTTAAA+GGG - Chr1:23915431-23915450 MsG0180001598.01.T01:CDS 35.0%
ATTGGGATAAAAGGGTTTCT+TGG - Chr1:23915899-23915918 MsG0180001598.01.T01:CDS 35.0%
ATTTCCAAAGATGGAGAATG+CGG + Chr1:23914949-23914968 None:intergenic 35.0%
GAATGCGGAAAATATCAACA+AGG + Chr1:23914934-23914953 None:intergenic 35.0%
GAGAGATGAAGATATTGAGT+TGG - Chr1:23915612-23915631 MsG0180001598.01.T01:CDS 35.0%
GGAGAAGGGGATATTTAATA+AGG - Chr1:23915225-23915244 MsG0180001598.01.T01:CDS 35.0%
TGAAGGCAAAAGAGAAATCT+TGG - Chr1:23915956-23915975 MsG0180001598.01.T01:CDS 35.0%
TGTTTGAGAATTTCGATGGT+AGG - Chr1:23915416-23915435 MsG0180001598.01.T01:CDS 35.0%
TTGAAGGATCAAAGATAGCA+AGG + Chr1:23915033-23915052 None:intergenic 35.0%
TTGAATTCGATTTCGAGGAT+GGG - Chr1:23915502-23915521 MsG0180001598.01.T01:CDS 35.0%
TTGGGATAAAAGGGTTTCTT+GGG - Chr1:23915900-23915919 MsG0180001598.01.T01:CDS 35.0%
! CACTAAATGTACCAAGGTTT+TGG - Chr1:23915651-23915670 MsG0180001598.01.T01:CDS 35.0%
! GAAGCTATGATTTGTGAAGA+AGG - Chr1:23915712-23915731 MsG0180001598.01.T01:CDS 35.0%
! GGTTTTCACTAAATGTACCA+AGG - Chr1:23915645-23915664 MsG0180001598.01.T01:CDS 35.0%
! TGATTTGTGAAGAAGGATTG+GGG - Chr1:23915719-23915738 MsG0180001598.01.T01:CDS 35.0%
! TTGACTCTTTTGCTTGAATG+GGG - Chr1:23915871-23915890 MsG0180001598.01.T01:CDS 35.0%
!! GATTGACTCTTTTGCTTGAA+TGG - Chr1:23915869-23915888 MsG0180001598.01.T01:CDS 35.0%
!! TTCACTTTTATGCCATCAAC+TGG + Chr1:23915286-23915305 None:intergenic 35.0%
ACTTGACTCAACACCACATA+TGG + Chr1:23915799-23915818 None:intergenic 40.0%
AGTTGGAGGAAGAAATTGCA+AGG - Chr1:23915253-23915272 MsG0180001598.01.T01:CDS 40.0%
ATCGAATTCAACCACAAACC+CGG + Chr1:23915493-23915512 None:intergenic 40.0%
GACAAAGGGTAGATTTGAAG+AGG - Chr1:23915825-23915844 MsG0180001598.01.T01:CDS 40.0%
GAGAGAGGAAGAGATATTCT+TGG - Chr1:23915546-23915565 MsG0180001598.01.T01:CDS 40.0%
GATAAAAGGGTTTCTTGGGA+AGG - Chr1:23915904-23915923 MsG0180001598.01.T01:CDS 40.0%
GATGGTAGGCTTGAGTTTAA+AGG - Chr1:23915430-23915449 MsG0180001598.01.T01:CDS 40.0%
GGGATGTCATTGGGATAAAA+GGG - Chr1:23915891-23915910 MsG0180001598.01.T01:CDS 40.0%
GTACATTTAGTGAAAACCGG+TGG + Chr1:23915643-23915662 None:intergenic 40.0%
GTTACGAATGAAGGGTTTAG+CGG + Chr1:23914810-23914829 None:intergenic 40.0%
GTTGAATTCGATTTCGAGGA+TGG - Chr1:23915501-23915520 MsG0180001598.01.T01:CDS 40.0%
TCATGGGGAATCCTCAATTT+AGG - Chr1:23915988-23916007 MsG0180001598.01.T01:CDS 40.0%
TCCATGTTTGTGCCAACATT+CGG + Chr1:23914897-23914916 None:intergenic 40.0%
TCTTGGCCAAATACTTCATG+GGG - Chr1:23915973-23915992 MsG0180001598.01.T01:CDS 40.0%
TGTGGTTGAATTCGATTTCG+AGG - Chr1:23915497-23915516 MsG0180001598.01.T01:CDS 40.0%
! AGGATTCCCCATGAAGTATT+TGG + Chr1:23915982-23916001 None:intergenic 40.0%
! ATTGTCTTTGAGGGATGCAA+AGG - Chr1:23915204-23915223 MsG0180001598.01.T01:CDS 40.0%
! TTTTCCGCATTCTCCATCTT+TGG - Chr1:23914942-23914961 MsG0180001598.01.T01:CDS 40.0%
!!! GGAACAATTTTGGTGCTGTT+TGG - Chr1:23915452-23915471 MsG0180001598.01.T01:CDS 40.0%
!!! TATTGAGTTGGTTTTGCCAC+CGG - Chr1:23915624-23915643 MsG0180001598.01.T01:CDS 40.0%
AAAGGGTTTCTTGGGAAGGT+TGG - Chr1:23915908-23915927 MsG0180001598.01.T01:CDS 45.0%
ACAACTTCACGAGAGGTTGA+AGG + Chr1:23915049-23915068 None:intergenic 45.0%
ACATATGGCTCTCCCACAAA+AGG + Chr1:23915784-23915803 None:intergenic 45.0%
AGAAGGATTGGGGAAGATTG+AGG - Chr1:23915729-23915748 MsG0180001598.01.T01:CDS 45.0%
AGGAATTGGAGTATGCTGAG+TGG + Chr1:23915003-23915022 None:intergenic 45.0%
CATATGGCTCTCCCACAAAA+GGG + Chr1:23915783-23915802 None:intergenic 45.0%
GAAGTTGTTCGTGGACATGT+TGG - Chr1:23915061-23915080 MsG0180001598.01.T01:CDS 45.0%
GAATAGGCCACAAAGAGACA+CGG + Chr1:23914981-23915000 None:intergenic 45.0%
GCTTGAATGGGGATGTCATT+GGG - Chr1:23915882-23915901 MsG0180001598.01.T01:CDS 45.0%
GGAACGGAGGATTGTGATTA+GGG + Chr1:23914864-23914883 None:intergenic 45.0%
GGAGGATTGTGATTAGGGAA+GGG + Chr1:23914859-23914878 None:intergenic 45.0%
GGGGATGTCATTGGGATAAA+AGG - Chr1:23915890-23915909 MsG0180001598.01.T01:CDS 45.0%
TCCGAATGTTGGCACAAACA+TGG - Chr1:23914893-23914912 MsG0180001598.01.T01:CDS 45.0%
TGCTTGAATGGGGATGTCAT+TGG - Chr1:23915881-23915900 MsG0180001598.01.T01:CDS 45.0%
TGGAGTATGCTGAGTGGAAT+AGG + Chr1:23914997-23915016 None:intergenic 45.0%
TTGAGGGATGCAAAGGAGAA+GGG - Chr1:23915211-23915230 MsG0180001598.01.T01:CDS 45.0%
TTTGAGGGATGCAAAGGAGA+AGG - Chr1:23915210-23915229 MsG0180001598.01.T01:CDS 45.0%
! TTTTGTGGGAGAGCCATATG+TGG - Chr1:23915783-23915802 MsG0180001598.01.T01:CDS 45.0%
!! CAAGGTCTTGTTCCAGTTGA+TGG - Chr1:23915271-23915290 MsG0180001598.01.T01:CDS 45.0%
!!! AATTTTGGTGCTGTTTGGCC+TGG - Chr1:23915457-23915476 MsG0180001598.01.T01:CDS 45.0%
!!! GTACCAAGGTTTTGGATGCA+GGG - Chr1:23915659-23915678 MsG0180001598.01.T01:CDS 45.0%
!!! TACCAAGGTTTTGGATGCAG+GGG - Chr1:23915660-23915679 MsG0180001598.01.T01:CDS 45.0%
!!! TGTACCAAGGTTTTGGATGC+AGG - Chr1:23915658-23915677 MsG0180001598.01.T01:CDS 45.0%
AAACCCGGCTTACCATTTCC+AGG + Chr1:23915478-23915497 None:intergenic 50.0%
ACCTCTCGTGAAGTTGTTCG+TGG - Chr1:23915052-23915071 MsG0180001598.01.T01:CDS 50.0%
ACGAATGAAGGGTTTAGCGG+AGG + Chr1:23914807-23914826 None:intergenic 50.0%
AGCGAGCTCGTTACGAATGA+AGG + Chr1:23914819-23914838 None:intergenic 50.0%
AGGGTTTAGCGGAGGTTAAG+AGG + Chr1:23914799-23914818 None:intergenic 50.0%
ATCACAATCCTCCGTTCCGT+TGG - Chr1:23914866-23914885 MsG0180001598.01.T01:CDS 50.0%
ATCCCCTGCATCCAAAACCT+TGG + Chr1:23915665-23915684 None:intergenic 50.0%
ATTCGGATGCACCAACGGAA+CGG + Chr1:23914880-23914899 None:intergenic 50.0%
CCAACATTCGGATGCACCAA+CGG + Chr1:23914885-23914904 None:intergenic 50.0%
CCACAAAGAGACACGGAGTA+TGG + Chr1:23914974-23914993 None:intergenic 50.0%
CCATACTCCGTGTCTCTTTG+TGG - Chr1:23914971-23914990 MsG0180001598.01.T01:CDS 50.0%
CGGAACGGAGGATTGTGATT+AGG + Chr1:23914865-23914884 None:intergenic 50.0%
CGGAGGATTGTGATTAGGGA+AGG + Chr1:23914860-23914879 None:intergenic 50.0%
CTTGGGAAGGTTGGATTGCA+TGG - Chr1:23915917-23915936 MsG0180001598.01.T01:CDS 50.0%
GAAATGGTAAGCCGGGTTTG+TGG - Chr1:23915479-23915498 MsG0180001598.01.T01:CDS 50.0%
GCGAGCTCGTTACGAATGAA+GGG + Chr1:23914818-23914837 None:intergenic 50.0%
GCTGAGAAAGAAGCTGAGAG+AGG - Chr1:23915847-23915866 MsG0180001598.01.T01:CDS 50.0%
GGATTGTGATTAGGGAAGGG+AGG + Chr1:23914856-23914875 None:intergenic 50.0%
GGGGAAGATTGAGGAGTTGT+TGG - Chr1:23915738-23915757 MsG0180001598.01.T01:CDS 50.0%
GGGTTTAGCGGAGGTTAAGA+GGG + Chr1:23914798-23914817 None:intergenic 50.0%
GTGAAGACGTGAAGCTTTCG+AGG - Chr1:23915320-23915339 MsG0180001598.01.T01:CDS 50.0%
TAGCGGAGGTTAAGAGGGTT+TGG + Chr1:23914793-23914812 None:intergenic 50.0%
TCCACGAACAACTTCACGAG+AGG + Chr1:23915056-23915075 None:intergenic 50.0%
TGAGGGATGCAAAGGAGAAG+GGG - Chr1:23915212-23915231 MsG0180001598.01.T01:CDS 50.0%
TGTGATTAGGGAAGGGAGGT+TGG + Chr1:23914852-23914871 None:intergenic 50.0%
TTGGCCTGGAAATGGTAAGC+CGG - Chr1:23915471-23915490 MsG0180001598.01.T01:CDS 50.0%
CCGTTGGTGCATCCGAATGT+TGG - Chr1:23914882-23914901 MsG0180001598.01.T01:CDS 55.0%
CGGAGGTTAAGAGGGTTTGG+AGG + Chr1:23914790-23914809 None:intergenic 55.0%
TGGCCTGGAAATGGTAAGCC+GGG - Chr1:23915472-23915491 MsG0180001598.01.T01:CDS 55.0%
!! GGTGCTGTTTGGCCTGGAAA+TGG - Chr1:23915463-23915482 MsG0180001598.01.T01:CDS 55.0%
! GGAAGGGAGGTTGGCATCGA+TGG + Chr1:23914843-23914862 None:intergenic 60.0%
CGGATGCACCAACGGAACGG+AGG + Chr1:23914877-23914896 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 23914752 23916023 23914752 ID=MsG0180001598.01;Name=MsG0180001598.01
Chr1 mRNA 23914752 23916023 23914752 ID=MsG0180001598.01.T01;Parent=MsG0180001598.01;Name=MsG0180001598.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|423
Chr1 exon 23914752 23916023 23914752 ID=MsG0180001598.01.T01:exon:40635;Parent=MsG0180001598.01.T01
Chr1 CDS 23914752 23916023 23914752 ID=MsG0180001598.01.T01:cds;Parent=MsG0180001598.01.T01
Gene Sequence

>MsG0180001598.01.T01

ATGTCAAATTCTTCTTCATCAAGTTCAAGTGAATACCTCCAAACCCTCTTAACCTCCGCTAAACCCTTCATTCGTAACGAGCTCGCTTCCATCGATGCCAACCTCCCTTCCCTAATCACAATCCTCCGTTCCGTTGGTGCATCCGAATGTTGGCACAAACATGGAACTTTCCTTGAACACCTTGTTGATATTTTCCGCATTCTCCATCTTTGGAAATCTCCATACTCCGTGTCTCTTTGTGGCCTATTCCACTCAGCATACTCCAATTCCTATGTTAACCTTGCTATCTTTGATCCTTCAACCTCTCGTGAAGTTGTTCGTGGACATGTTGGTGTAGAAGCTGAGCGTTTGATTCATTTGTTTTGTGTTGTTCCTAGACAATCTCTTATTCATGATGATCTTCTTTTTCACTACTCTGATAAGGAGCTTTGTCATGATCTTGAAAAATCAGAATTGTCTTTGAGGGATGCAAAGGAGAAGGGGATATTTAATAAGGATGAAAGTTGGAGGAAGAAATTGCAAGGTCTTGTTCCAGTTGATGGCATAAAAGTGAAGCATATTCGTACAGGTGAAGACGTGAAGCTTTCGAGGAGAATTGTCGCTGTTTTTGTTATGATGACTATGGCTGATTTTTGTGATCAGCTTTTTGGTTTTCAAGATATGTTGTTTGAGAATTTCGATGGTAGGCTTGAGTTTAAAGGGAACAATTTTGGTGCTGTTTGGCCTGGAAATGGTAAGCCGGGTTTGTGGTTGAATTCGATTTCGAGGATGGGAGCTGTTTATAATTTGATTCGGAGAGAGGAAGAGATATTCTTGGAAGAAAAGAAGAAAGTAAAAAGAGTTAATGGTGTTAATAGTGAGAGAGATGAAGATATTGAGTTGGTTTTGCCACCGGTTTTCACTAAATGTACCAAGGTTTTGGATGCAGGGGATCAAATAGTTGCAAGAGATTTGTATTGGGAAGCTATGATTTGTGAAGAAGGATTGGGGAAGATTGAGGAGTTGTTGGTGAAGAGTATTGAGAAAAACCCTTTTGTGGGAGAGCCATATGTGGTGTTGAGTCAAGTTTATTTGACAAAGGGTAGATTTGAAGAGGCTGAGAAAGAAGCTGAGAGAGGATTGACTCTTTTGCTTGAATGGGGATGTCATTGGGATAAAAGGGTTTCTTGGGAAGGTTGGATTGCATGGACTAGAGTTTTGTTAATGAAGGCAAAAGAGAAATCTTGGCCAAATACTTCATGGGGAATCCTCAATTTAGGTCTTGTAAAGTAA
Protein sequence

>MsG0180001598.01.T01

MSNSSSSSSSEYLQTLLTSAKPFIRNELASIDANLPSLITILRSVGASECWHKHGTFLEHLVDIFRILHLWKSPYSVSLCGLFHSAYSNSYVNLAIFDPSTSREVVRGHVGVEAERLIHLFCVVPRQSLIHDDLLFHYSDKELCHDLEKSELSLRDAKEKGIFNKDESWRKKLQGLVPVDGIKVKHIRTGEDVKLSRRIVAVFVMMTMADFCDQLFGFQDMLFENFDGRLEFKGNNFGAVWPGNGKPGLWLNSISRMGAVYNLIRREEEIFLEEKKKVKRVNGVNSERDEDIELVLPPVFTKCTKVLDAGDQIVARDLYWEAMICEEGLGKIEELLVKSIEKNPFVGEPYVVLSQVYLTKGRFEEAEKEAERGLTLLLEWGCHWDKRVSWEGWIAWTRVLLMKAKEKSWPNTSWGILNLGLVK*