AlfalfaGEDB | MsG0180001692.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001692.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001692.01.T01	XP_024626489.1	89.6	125	13	0	75	199	1085	1209	1.33E-65	229

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001692.01.T01	A0A072VGV5	89.600	125	13	0	75	199	1085	1209	6.37e-66	229

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001692.01	MsG0380015548.01	0.803241	3.828883e-49	1.914371e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001692.01.T01	MTR_1g041300	89.600	125	13	0	75	199	1085	1209	1.62e-69	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 42 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGGAGAGTGTAACA+AGG	0.685981	1:-25397088	MsG0180001692.01.T01:CDS
AAATACCGTTCCAGCTGTCG+GGG	0.609455	1:+25397355	None:intergenic
AAATGGTGGTTATGAAACAA+GGG	0.692406	1:-25397102	MsG0180001692.01.T01:CDS
AAATGTGGTGTCCGGTCTCT+TGG	0.461743	1:+25397468	None:intergenic
AACAATTCTACATTTGCAAA+TGG	0.420420	1:-25397119	MsG0180001692.01.T01:CDS
AAGAAGCAATTGAGAAAGAA+GGG	0.472715	1:-25397215	MsG0180001692.01.T01:CDS
AAGAATGAGCTAAATGATCC+AGG	0.525342	1:-25397495	None:intergenic
AATTCTACATTTGCAAATGG+TGG	0.527425	1:-25397116	MsG0180001692.01.T01:CDS
ACCCAAAATCTTAAGGCTTT+CGG	0.289769	1:-25397443	MsG0180001692.01.T01:CDS
AGAAGCAGCTTCACTGATAG+TGG	0.511751	1:-25397173	MsG0180001692.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGTGGTTATGAAACAA+GGG	-	Chr1:25397165-25397184	MsG0180001692.01.T01:CDS	30.0%
AAGAAGCAATTGAGAAAGAA+GGG	-	Chr1:25397052-25397071	MsG0180001692.01.T01:CDS	30.0%
AATTCTACATTTGCAAATGG+TGG	-	Chr1:25397151-25397170	MsG0180001692.01.T01:CDS	30.0%
CATTTCAACCCAAAATCTTA+AGG	-	Chr1:25396817-25396836	MsG0180001692.01.T01:CDS	30.0%
TGAATCAAGACAAGAAGAAT+CGG	-	Chr1:25397285-25397304	MsG0180001692.01.T01:intron	30.0%
ACCCAAAATCTTAAGGCTTT+CGG	-	Chr1:25396824-25396843	MsG0180001692.01.T01:CDS	35.0%
CAAATGGTGGTTATGAAACA+AGG	-	Chr1:25397164-25397183	MsG0180001692.01.T01:CDS	35.0%
CAAGTGATGTTTGGATTATC+AGG	+	Chr1:25397223-25397242	None:intergenic	35.0%
CTTCTTGTCTTGATTCAGTT+CGG	+	Chr1:25397282-25397301	None:intergenic	35.0%
GAAGAAGCAATTGAGAAAGA+AGG	-	Chr1:25397051-25397070	MsG0180001692.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	25396785	25397504	25396785	ID=MsG0180001692.01;Name=MsG0180001692.01
Chr1	mRNA	25396785	25397504	25396785	ID=MsG0180001692.01.T01;Parent=MsG0180001692.01;Name=MsG0180001692.01.T01;_AED=0.60;_eAED=0.64;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|199
Chr1	exon	25397361	25397504	25397361	ID=MsG0180001692.01.T01:exon:40838;Parent=MsG0180001692.01.T01
Chr1	exon	25396785	25397240	25396785	ID=MsG0180001692.01.T01:exon:40837;Parent=MsG0180001692.01.T01
Chr1	CDS	25397361	25397504	25397361	ID=MsG0180001692.01.T01:cds;Parent=MsG0180001692.01.T01
Chr1	CDS	25396785	25397240	25396785	ID=MsG0180001692.01.T01:cds;Parent=MsG0180001692.01.T01

Gene Sequence

>MsG0180001692.01.T01

ATGATCCAGGATCACCAAGAGACCGGACACCACATTTCAACCCAAAATCTTAAGGCTTTCGGAGGAGACATGGTGTCCCGATCTCTCGGTGGTTCAGAAACATTAGCCCGTTGTTGCTCTCGAGACTCCCCGACAGCTGGAACGATGAAGAAGCAATTGAGAAAGAAGGGAAGATTATTCACAACATGCAGAAGCAGCTTCACTGATAGTGGAAGAGCTAACACTTCCACTGAATTAAGTTCAAACAATTCTACATTTGCAAATGGTGGTTATGAAACAAGGGAGAGTGTAACAAGGCTAAGTACTGAATCAAATCCTGATAATCCAAACATCACTTGTCAGATGCAAAAATCACCAAGCTTCAATCTCAACCTCCGAACTGAATCAAGACAAGAAGAATCGGATCAAATTCCATTGCTTGATAAGTCTTCAGATGATAGCTTGTCAAACAAGGCAAGTCTAAATATCAGTAACTCAGTGCCTCATGATGAGTATGGTCTCATTGAAGAGAAAATTGTTACTATGGAAAGAAGTTACTCTGAGATATCTAAAGCTTCGTTCGTTGGTTTTTTAAAAGAAGAAAAAGGGCTCATGTTCTAG

Protein sequence

>MsG0180001692.01.T01

MIQDHQETGHHISTQNLKAFGGDMVSRSLGGSETLARCCSRDSPTAGTMKKQLRKKGRLFTTCRSSFTDSGRANTSTELSSNNSTFANGGYETRESVTRLSTESNPDNPNITCQMQKSPSFNLNLRTESRQEESDQIPLLDKSSDDSLSNKASLNISNSVPHDEYGLIEEKIVTMERSYSEISKASFVGFLKEEKGLMF*