AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002420.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002420.01.T01 MTR_0728s0020 91.887 604 38 2 68 661 1 603 0.0 1061
MsG0180002420.01.T01 MTR_1g050438 92.517 588 33 2 84 661 1 587 0.0 1041
MsG0180002420.01.T01 MTR_3g029590 55.733 689 239 19 80 721 27 696 0.0 642
MsG0180002420.01.T01 MTR_7g092070 53.274 672 264 20 84 720 33 689 0.0 595
MsG0180002420.01.T01 MTR_3g435590 46.608 457 180 5 82 534 16 412 9.15e-133 401
MsG0180002420.01.T01 MTR_5g082830 34.685 666 328 20 98 709 30 642 3.12e-109 347
MsG0180002420.01.T01 MTR_5g071070 36.041 677 322 19 98 711 35 663 3.58e-107 342
MsG0180002420.01.T01 MTR_1g075890 48.494 332 150 4 97 426 32 344 3.68e-100 322
MsG0180002420.01.T01 MTR_3g435680 46.465 396 149 10 147 534 5 345 3.42e-99 311
MsG0180002420.01.T01 MTR_5g071070 35.828 628 293 18 147 711 1 581 1.64e-94 306
MsG0180002420.01.T01 MTR_3g070880 42.771 332 130 4 97 428 9 280 3.52e-86 281
MsG0180002420.01.T01 MTR_3g464260 33.855 511 234 17 84 577 11 434 3.74e-69 236
MsG0180002420.01.T01 MTR_3g464280 30.354 593 274 17 119 705 37 496 2.37e-58 206
MsG0180002420.01.T01 MTR_8g102100 61.345 119 46 0 307 425 77 195 1.33e-49 179
MsG0180002420.01.T01 MTR_6g090380 65.421 107 37 0 307 413 99 205 1.44e-48 176
MsG0180002420.01.T01 MTR_2g090605 63.964 111 40 0 311 421 77 187 1.69e-47 174
MsG0180002420.01.T01 MTR_3g103960 61.468 109 41 1 306 413 48 156 1.69e-45 164
MsG0180002420.01.T01 MTR_4g078660 57.944 107 45 0 307 413 56 162 2.97e-43 159
MsG0180002420.01.T01 MTR_1g050432 83.721 86 2 1 1 74 292 377 4.41e-38 146
MsG0180002420.01.T01 MTR_3g464270 35.573 253 136 6 309 555 7 238 9.93e-38 144
MsG0180002420.01.T01 MTR_3g464290 57.143 98 41 1 288 384 77 174 2.21e-33 134
MsG0180002420.01.T01 MTR_2g090140 44.186 86 36 1 1 74 283 368 1.58e-17 85.5
MsG0180002420.01.T01 MTR_1g050442 73.810 42 11 0 680 721 1 42 7.36e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002420.01.T01 AT2G41900 48.291 673 293 18 80 721 30 678 0.0 537
MsG0180002420.01.T01 AT5G12850 47.706 654 288 23 88 711 32 661 1.05e-173 514
MsG0180002420.01.T01 AT5G58620 37.107 636 309 20 95 704 11 581 1.75e-109 345
MsG0180002420.01.T01 AT2G40140 34.855 657 311 19 80 720 13 568 9.64e-99 317
MsG0180002420.01.T01 AT2G40140 34.855 657 311 19 80 720 13 568 9.64e-99 317
MsG0180002420.01.T01 AT3G55980 39.904 416 198 8 98 506 30 400 3.41e-92 299
MsG0180002420.01.T01 AT3G55980 40.625 416 195 9 98 506 97 467 2.16e-91 299
MsG0180002420.01.T01 AT1G03790 59.859 142 49 3 289 426 64 201 1.05e-50 182
MsG0180002420.01.T01 AT2G25900 63.636 110 40 0 307 416 86 195 2.01e-50 179
MsG0180002420.01.T01 AT2G25900 63.636 110 40 0 307 416 86 195 2.01e-50 179
MsG0180002420.01.T01 AT5G07500 58.678 121 50 0 293 413 34 154 4.52e-49 173
MsG0180002420.01.T01 AT2G19810 59.677 124 48 1 296 417 61 184 6.63e-49 176
MsG0180002420.01.T01 AT4G29190 54.167 144 65 1 307 450 75 217 2.37e-48 174
MsG0180002420.01.T01 AT5G44260 56.204 137 53 2 281 416 36 166 5.30e-46 169
MsG0180002420.01.T01 AT5G08415 74.419 86 10 1 1 74 300 385 2.86e-33 132
MsG0180002420.01.T01 AT2G20860 47.674 86 33 1 1 74 277 362 4.85e-18 87.0
MsG0180002420.01.T01 AT2G20860 47.674 86 33 1 1 74 277 362 4.85e-18 87.0
MsG0180002420.01.T01 AT2G20860 47.674 86 33 1 1 74 277 362 4.85e-18 87.0

Find 180 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTGACAAGTTTGATTTC+TGG 0.175287 1:+38255406 MsG0180002420.01.T01:CDS
ACTTTCAAGCTTTGCATATT+AGG 0.177408 1:-38258730 None:intergenic
AGTTCTGGTTTGCTTGAAAA+TGG 0.189066 1:+38258838 MsG0180002420.01.T01:CDS
AGGAAACAATGATGGATTTA+AGG 0.195263 1:+38255146 MsG0180002420.01.T01:CDS
AACAACAGAGGAAGGGATTT+TGG 0.205426 1:-38259994 None:intergenic
AGTCAGAATATCCACATTTA+TGG 0.217980 1:-38255170 None:intergenic
CAAGCCCCTTTCCTGAATTC+AGG 0.227916 1:-38259132 None:intergenic
TTTGATTTCTGGAAAGAATA+TGG 0.235844 1:+38255417 MsG0180002420.01.T01:CDS
CGATTAATGAGGCGGGAATT+TGG 0.252456 1:+38258422 MsG0180002420.01.T01:CDS
AATTCTTGAGAAACTTCTTT+TGG 0.276329 1:+38258753 MsG0180002420.01.T01:CDS
AGGCCACTGCCTTCGTTAAC+TGG 0.276593 1:+38259297 MsG0180002420.01.T01:CDS
AGTTTCAACTTTCAAAGATA+TGG 0.280862 1:+38258291 MsG0180002420.01.T01:CDS
TCTGTTGATTCTTCTAGTTC+TGG 0.291419 1:+38258823 MsG0180002420.01.T01:CDS
AAAATCCCTTCCTCTGTTGT+TGG 0.292864 1:+38259996 MsG0180002420.01.T01:CDS
GCATGCCTTGCCCTGAATTC+AGG 0.298337 1:+38259121 MsG0180002420.01.T01:CDS
TTGATGGTTGCTGCCACTTA+TGG 0.302833 1:+38258496 MsG0180002420.01.T01:CDS
GCCCTTCACTGTGCTGCTTC+TGG 0.307051 1:+38258598 MsG0180002420.01.T01:CDS
TAGGCCTAGTTGTAATAAAA+AGG 0.309683 1:+38259242 MsG0180002420.01.T01:CDS
CTCATTCTCAAGTGCTGCTT+GGG 0.310662 1:+38259473 MsG0180002420.01.T01:CDS
AATAGATTAAATTTGCGAAT+TGG 0.323983 1:-38260234 None:intergenic
AATTCAGGAAAGGGGCTTGC+AGG 0.326756 1:+38259136 MsG0180002420.01.T01:CDS
CACTTTCTCTTACCATTGTC+TGG 0.327872 1:-38255743 None:intergenic
TCCTAGTTCTTGTCGGTCTA+AGG 0.332234 1:+38259653 MsG0180002420.01.T01:CDS
GGCTGCTGCAATGAATCTTT+TGG 0.332820 1:+38259374 MsG0180002420.01.T01:CDS
TGAGCACAAAACTCCTTTGA+TGG 0.333522 1:+38258480 MsG0180002420.01.T01:CDS
TCATTTGAACATAAAATCAT+TGG 0.355518 1:+38260113 MsG0180002420.01.T01:CDS
ATTTGGTACGGTCGACAAAA+TGG 0.358517 1:+38258439 MsG0180002420.01.T01:CDS
AATATGCTGAGCTATTTAGA+TGG 0.359724 1:+38259585 MsG0180002420.01.T01:CDS
ATATCTGATTGGTCGTTATA+TGG 0.363137 1:+38260056 MsG0180002420.01.T01:CDS
AAGACGATGCTCATCATTCT+TGG 0.366937 1:-38259850 None:intergenic
CCAGTTGATCCATCATTTCC+TGG 0.368573 1:+38258940 MsG0180002420.01.T01:CDS
ATGAGGATGCATTGTGCATT+TGG 0.377230 1:-38260094 None:intergenic
CTCAGCATATTGAAGTCTTC+AGG 0.382631 1:-38259573 None:intergenic
GGAAACAATGATGGATTTAA+GGG 0.385531 1:+38255147 MsG0180002420.01.T01:CDS
AGCTGCATAGTGTTAGTTCT+AGG 0.387153 1:+38259961 MsG0180002420.01.T01:CDS
TGGGCACAGCAAAATGTTCT+AGG 0.387831 1:+38259492 MsG0180002420.01.T01:CDS
TTCTCTCCGGGATGCACATA+TGG 0.394353 1:-38259060 None:intergenic
CCCGTTCACAATCTCATGAT+TGG 0.398242 1:+38259028 MsG0180002420.01.T01:CDS
CTGCCTTCGTTAACTGGATC+TGG 0.398343 1:+38259303 MsG0180002420.01.T01:CDS
CCAGGAAATGATGGATCAAC+TGG 0.407420 1:-38258940 None:intergenic
TCTCATTCTCAAGTGCTGCT+TGG 0.415243 1:+38259472 MsG0180002420.01.T01:CDS
AGTCGTGTTCGATACTGATC+TGG 0.416868 1:-38259210 None:intergenic
TTCCAGAAATCAAACTTGTC+AGG 0.423098 1:-38255408 None:intergenic
TGAGGGCTCAGTGGGGAGAC+TGG 0.425522 1:-38259900 None:intergenic
TGTATGCAAACGATGAATTT+CGG 0.427602 1:+38258977 MsG0180002420.01.T01:CDS
CTCCTCCGAGCCTTCTCTCC+GGG 0.428697 1:-38259072 None:intergenic
GGGAATTATTCTGTAGGACT+TGG 0.433684 1:-38260163 None:intergenic
AAGAGGTCTTCAAGATTTGA+TGG 0.444188 1:-38259684 None:intergenic
TTTCAATCTAGTAGTCGGTT+GGG 0.445265 1:+38259522 MsG0180002420.01.T01:CDS
AACTGGATACTGTTTATTCT+CGG 0.446949 1:-38258923 None:intergenic
AACTTCTCTGTATTCGTCTC+AGG 0.452345 1:-38260188 None:intergenic
GGAACAACAATGAGATCAAC+AGG 0.452808 1:-38258706 None:intergenic
CTCTGTTGTTGGACCACCTA+CGG 0.455551 1:+38260007 MsG0180002420.01.T01:CDS
AAGAAGAGCCTAATCTATCA+TGG 0.461395 1:+38260138 MsG0180002420.01.T01:CDS
CTTCACTGTGCTGCTTCTGG+TGG 0.465162 1:+38258601 MsG0180002420.01.T01:CDS
TGGTAGTATTGATGTTATGA+AGG 0.465621 1:+38258516 MsG0180002420.01.T01:CDS
AAGCCCCTTTCCTGAATTCA+GGG 0.466005 1:-38259131 None:intergenic
AGGAAAGGGGCTTGCAGGCA+TGG 0.466664 1:+38259141 MsG0180002420.01.T01:CDS
AATGTGGATATTCTGACTCT+TGG 0.468083 1:+38255175 MsG0180002420.01.T01:CDS
GACCAATCAGATATCTCATT+AGG 0.468837 1:-38260047 None:intergenic
TCTCCTCCGAGCCTTCTCTC+CGG 0.470377 1:-38259073 None:intergenic
ACAAAATTTCCGCAGAAAAG+AGG 0.471696 1:-38259701 None:intergenic
CATTTGAACATAAAATCATT+GGG 0.474936 1:+38260114 MsG0180002420.01.T01:CDS
AACATCAATACTACCATAAG+TGG 0.474991 1:-38258509 None:intergenic
TACGATCTTCATACCGAGCT+GGG 0.475429 1:+38255709 MsG0180002420.01.T01:CDS
AACCCGGTCCTAGTTCTTGT+CGG 0.478599 1:+38259646 MsG0180002420.01.T01:CDS
ACGAAATCTTCGATAATGTT+AGG 0.479900 1:+38255097 None:intergenic
TCTTCGATAATGTTAGGCCT+TGG 0.480956 1:+38255103 None:intergenic
AGTGTTAGTTCTAGGGAACT+TGG 0.481159 1:+38259969 MsG0180002420.01.T01:CDS
GAAGGTTATACTCTCGTATC+CGG 0.481900 1:+38258534 MsG0180002420.01.T01:CDS
GAGGAAATGCAGACATTTGA+GGG 0.482099 1:-38259917 None:intergenic
GACAGCATATTAGTATTTGA+AGG 0.484710 1:-38259825 None:intergenic
TTCACTGTGCTGCTTCTGGT+GGG 0.489511 1:+38258602 MsG0180002420.01.T01:CDS
AGACGATGCTCATCATTCTT+GGG 0.490668 1:-38259849 None:intergenic
ACCTCTGATAATATATCTGT+TGG 0.492831 1:+38258781 MsG0180002420.01.T01:CDS
CTCATGGAATATTCGAGTGC+TGG 0.497753 1:+38259181 MsG0180002420.01.T01:CDS
CTTGCCCTGAATTCAGGAAA+GGG 0.500592 1:+38259127 MsG0180002420.01.T01:CDS
AACAGCTCAAGTCATTCATA+AGG 0.503787 1:-38259617 None:intergenic
TGAGGAAATGCAGACATTTG+AGG 0.507215 1:-38259918 None:intergenic
GAAGCAAGTACCAGTAAACT+TGG 0.508787 1:-38258346 None:intergenic
GTGAGGATTCTTATTTCCGC+GGG 0.510979 1:+38258646 MsG0180002420.01.T01:CDS
CAGACATTTGAGGGCTCAGT+GGG 0.513831 1:-38259908 None:intergenic
GTCACCACCTTCTCCTGTGG+TGG 0.515604 1:+38258888 MsG0180002420.01.T01:CDS
GATGGAAGTAAGAGACTGAC+GGG 0.516673 1:-38259407 None:intergenic
GAACACGACTCTGTAAAGAT+AGG 0.519096 1:+38259223 MsG0180002420.01.T01:CDS
CTCCTAATGAGATATCTGAT+TGG 0.519165 1:+38260045 MsG0180002420.01.T01:CDS
ACCAGAAGCAGCACAGTGAA+GGG 0.521479 1:-38258599 None:intergenic
AGAGCTTACCAGTGGGCCGC+TGG 0.521882 1:-38255466 None:intergenic
AGGCTCGGAGGAGAGACCTT+AGG 0.523990 1:+38259082 MsG0180002420.01.T01:CDS
GTTAGTTGTGTCAATAGCAA+TGG 0.528128 1:+38258676 MsG0180002420.01.T01:CDS
TTCAAGCTTTGCATATTAGG+AGG 0.529947 1:-38258727 None:intergenic
TTCTCTGTATTCGTCTCAGG+TGG 0.532355 1:-38260185 None:intergenic
CGAGGTGAAGGAAACAATGA+TGG 0.533071 1:+38255138 MsG0180002420.01.T01:CDS
TTCGAATCCACCACAGGAGA+AGG 0.533536 1:-38258895 None:intergenic
CTCTGTATTCGTCTCAGGTG+GGG 0.535371 1:-38260183 None:intergenic
AGGAGCTTCTTCGATTAATG+AGG 0.538092 1:+38258411 MsG0180002420.01.T01:CDS
CCAATCATGAGATTGTGAAC+GGG 0.538143 1:-38259028 None:intergenic
GGTGACACTGAAGGAGGGTA+TGG 0.540320 1:-38258871 None:intergenic
CGAATCTGATGACGAGGTGA+AGG 0.542553 1:+38255126 MsG0180002420.01.T01:CDS
ATATGCTGAGCTATTTAGAT+GGG 0.543705 1:+38259586 MsG0180002420.01.T01:CDS
CACCAGAAGCAGCACAGTGA+AGG 0.545082 1:-38258600 None:intergenic
TTATGTAGCCAGCGGCCCAC+TGG 0.550759 1:+38255458 MsG0180002420.01.T01:CDS
GTACGATCTTCATACCGAGC+TGG 0.551111 1:+38255708 MsG0180002420.01.T01:CDS
GCTGCATAGTGTTAGTTCTA+GGG 0.553291 1:+38259962 MsG0180002420.01.T01:CDS
TGCATCCCGGAGAGAAGGCT+CGG 0.553406 1:+38259067 MsG0180002420.01.T01:CDS
AGACCGACAAGAACTAGGAC+CGG 0.553527 1:-38259649 None:intergenic
AGCTTCTTCGATTAATGAGG+CGG 0.556906 1:+38258414 MsG0180002420.01.T01:CDS
TCCAATCATGAGATTGTGAA+CGG 0.559478 1:-38259029 None:intergenic
GCTTCTCACAATGACTCTGA+AGG 0.563152 1:+38258364 MsG0180002420.01.T01:CDS
GGTGGTCCAACAACAGAGGA+AGG 0.567580 1:-38260002 None:intergenic
CAGGCTGAATGTTGCAAGCG+CGG 0.567752 1:-38259554 None:intergenic
GCTTCTTCGATTAATGAGGC+GGG 0.570758 1:+38258415 MsG0180002420.01.T01:CDS
CTCGGAGGAGAGACCTTAGG+AGG 0.570887 1:+38259085 MsG0180002420.01.T01:CDS
GCCTTAGACCGACAAGAACT+AGG 0.575103 1:-38259654 None:intergenic
GTAAATTTCGAATCCACCAC+AGG 0.575410 1:-38258901 None:intergenic
TGATGTGAATTCCGCTTGCA+TGG 0.576297 1:+38258561 MsG0180002420.01.T01:CDS
ATAGCAGCTGATTCATGTGA+AGG 0.576310 1:-38259768 None:intergenic
TAGCAGCTGATTCATGTGAA+GGG 0.576933 1:-38259767 None:intergenic
TTGGACCACCTACGGACCCA+TGG 0.576953 1:+38260015 MsG0180002420.01.T01:CDS
GCGGAATTCACATCAACCTC+CGG 0.577460 1:-38258553 None:intergenic
TAAGTGGCAGCAACCATCAA+AGG 0.581005 1:-38258493 None:intergenic
ATGAGATGCCATTTCCAGAA+GGG 0.584083 1:-38259455 None:intergenic
GGATTTAAGGGCCATAAATG+TGG 0.585970 1:+38255159 MsG0180002420.01.T01:CDS
GTCGTGTTCGATACTGATCT+GGG 0.586400 1:-38259209 None:intergenic
AAAGAATATGGAGAGTCTAT+CGG 0.587091 1:+38255429 MsG0180002420.01.T01:CDS
ATATGTGCATCCCGGAGAGA+AGG 0.587617 1:+38259062 MsG0180002420.01.T01:CDS
GATAAGTGTGAATATGCTCA+TGG 0.587938 1:+38259165 MsG0180002420.01.T01:CDS
GATGCAGATGAACGTGGTGA+AGG 0.588152 1:-38259330 None:intergenic
AGAAGAGCCTAATCTATCAT+GGG 0.588660 1:+38260139 MsG0180002420.01.T01:CDS
CCTTGCCCTGAATTCAGGAA+AGG 0.589700 1:+38259126 MsG0180002420.01.T01:CDS
ACTTGGACCCATGATAGATT+AGG 0.592397 1:-38260146 None:intergenic
CCTTTCCTGAATTCAGGGCA+AGG 0.594200 1:-38259126 None:intergenic
CACACGATGAAAAGGAATTG+AGG 0.597745 1:+38259277 MsG0180002420.01.T01:CDS
TTGCCCTGAATTCAGGAAAG+GGG 0.599832 1:+38259128 MsG0180002420.01.T01:CDS
AGTGTCACCACCTTCTCCTG+TGG 0.600051 1:+38258885 MsG0180002420.01.T01:CDS
GACCGACAAGAACTAGGACC+GGG 0.601622 1:-38259648 None:intergenic
TTGAGCTGTTTCTCACAACC+CGG 0.602356 1:+38259630 MsG0180002420.01.T01:CDS
ACAACTAACATTTGCACCCG+CGG 0.603059 1:-38258662 None:intergenic
TAGGTATTCTGACCCAGCAA+TGG 0.603203 1:+38259731 MsG0180002420.01.T01:CDS
CGGTCGACAAAATGGCTCTA+CGG 0.603364 1:+38258447 MsG0180002420.01.T01:CDS
AGCTGTAAGAGAACCTCCTA+AGG 0.606098 1:-38259098 None:intergenic
TCTCTGTATTCGTCTCAGGT+GGG 0.607073 1:-38260184 None:intergenic
AATGAGGCGGGAATTTGGTA+CGG 0.609266 1:+38258427 MsG0180002420.01.T01:CDS
TGCTGCTGTTTCTCGCGATG+AGG 0.610108 1:-38259936 None:intergenic
AGCAGCTGATTCATGTGAAG+GGG 0.610846 1:-38259766 None:intergenic
GATCCAGTTAACGAAGGCAG+TGG 0.612013 1:-38259300 None:intergenic
TAAGACCATGGGTCCGTAGG+TGG 0.612212 1:-38260020 None:intergenic
TGTGAGGATTCTTATTTCCG+CGG 0.612292 1:+38258645 MsG0180002420.01.T01:CDS
GAGTGTCCATATGTGCATCC+CGG 0.612767 1:+38259054 MsG0180002420.01.T01:CDS
GGACGAAGAGCTCCCCAGCT+CGG 0.613187 1:-38255722 None:intergenic
CAGGTGGGGAATTATTCTGT+AGG 0.615860 1:-38260169 None:intergenic
GGATGGAAGTAAGAGACTGA+CGG 0.616567 1:-38259408 None:intergenic
TGAGATGCCATTTCCAGAAG+GGG 0.617123 1:-38259454 None:intergenic
CTAATGTTGTTGATGCTGTG+AGG 0.619443 1:+38258629 MsG0180002420.01.T01:CDS
GAATAAGACCATGGGTCCGT+AGG 0.624229 1:-38260023 None:intergenic
CATTAGGAGAATAAGACCAT+GGG 0.624382 1:-38260031 None:intergenic
ACCAACAGATATATTATCAG+AGG 0.629394 1:-38258782 None:intergenic
GAAGGTGGTGACACTGAAGG+AGG 0.631733 1:-38258877 None:intergenic
GGAGAAGGTGGTGACACTGA+AGG 0.632383 1:-38258880 None:intergenic
TCATTAGGAGAATAAGACCA+TGG 0.632729 1:-38260032 None:intergenic
AATGAGATGCCATTTCCAGA+AGG 0.634273 1:-38259456 None:intergenic
CCTTGGCGAATCTGATGACG+AGG 0.637136 1:+38255120 MsG0180002420.01.T01:CDS
GCAGACATTTGAGGGCTCAG+TGG 0.644297 1:-38259909 None:intergenic
GAATCCACCACAGGAGAAGG+TGG 0.649733 1:-38258892 None:intergenic
CCTCGTCATCAGATTCGCCA+AGG 0.651966 1:-38255120 None:intergenic
GGAGCTCTTCGTCCAGACAA+TGG 0.655905 1:+38255731 MsG0180002420.01.T01:CDS
GTGGTCCAACAACAGAGGAA+GGG 0.664346 1:-38260001 None:intergenic
CGTAGGTGGTCCAACAACAG+AGG 0.665010 1:-38260006 None:intergenic
ATTGTGAACGGGAACAACGA+AGG 0.665165 1:-38259017 None:intergenic
ACGATCTTCATACCGAGCTG+GGG 0.665611 1:+38255710 MsG0180002420.01.T01:CDS
ATTGCTGGGTCAGAATACCT+AGG 0.669043 1:-38259729 None:intergenic
ATCCCGGAGAGAAGGCTCGG+AGG 0.669076 1:+38259070 MsG0180002420.01.T01:CDS
AAGGTGGTGACACTGAAGGA+GGG 0.677347 1:-38258876 None:intergenic
GGTTATACTCTCGTATCCGG+AGG 0.688899 1:+38258537 MsG0180002420.01.T01:CDS
GAGATGCCATTTCCAGAAGG+GGG 0.701139 1:-38259453 None:intergenic
ACGCCAGATCCAGTTAACGA+AGG 0.708633 1:-38259306 None:intergenic
AAAGCAGATGCAGATGAACG+TGG 0.708647 1:-38259336 None:intergenic
ATGGAAGTAAGAGACTGACG+GGG 0.742388 1:-38259406 None:intergenic
TGGAAGTAAGAGACTGACGG+GGG 0.784123 1:-38259405 None:intergenic
AGACATTTGAGGGCTCAGTG+GGG 0.787595 1:-38259907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTTATTTATTAATT+AGG - Chr1:38256622-38256641 None:intergenic 0.0%
!! CTTCATATATATATAAAATA+AGG - Chr1:38256466-38256485 None:intergenic 10.0%
!! TTAAAAACAAAACATATTAT+TGG + Chr1:38256571-38256590 MsG0180002420.01.T01:intron 10.0%
!!! CAATATACAATTATTTTATT+GGG + Chr1:38256415-38256434 MsG0180002420.01.T01:intron 10.0%
!!! GGTATTTATAAATATATTTT+AGG - Chr1:38256718-38256737 None:intergenic 10.0%
!!! TATAAATATATTTTAGGAAA+CGG - Chr1:38256712-38256731 None:intergenic 10.0%
!!! TCAATATACAATTATTTTAT+TGG + Chr1:38256414-38256433 MsG0180002420.01.T01:intron 10.0%
!!! TTATACTTATTAATTTGATA+TGG - Chr1:38256494-38256513 None:intergenic 10.0%
!! AATACATAAAAATTGTTTGA+TGG + Chr1:38256794-38256813 MsG0180002420.01.T01:intron 15.0%
!! ACAATATGTGATAATAAATT+AGG - Chr1:38256021-38256040 None:intergenic 15.0%
!! ATCAATCAAAATACTTAAAT+CGG - Chr1:38258216-38258235 None:intergenic 15.0%
!! ATTCTACCAAAAAAAAAATT+AGG - Chr1:38255990-38256009 None:intergenic 15.0%
!! CAATATGTGATAATAAATTA+GGG - Chr1:38256020-38256039 None:intergenic 15.0%
!! CGAATATTTATTGAATAATT+TGG + Chr1:38257810-38257829 MsG0180002420.01.T01:intron 15.0%
!! GAATTTATATGCAAAAAAAT+TGG - Chr1:38257042-38257061 None:intergenic 15.0%
!! GATTAAAAATTCAATCTAAA+AGG - Chr1:38255628-38255647 None:intergenic 15.0%
!! TAAACAAAAAAAATTAGACA+GGG - Chr1:38256076-38256095 None:intergenic 15.0%
!! TAAATATAGTACATCAAATA+TGG - Chr1:38256854-38256873 None:intergenic 15.0%
!! TTAAACAAAAAAAATTAGAC+AGG - Chr1:38256077-38256096 None:intergenic 15.0%
!! TTCTACCAAAAAAAAAATTA+GGG - Chr1:38255989-38256008 None:intergenic 15.0%
!! TTCTCATAAATATAACTATA+GGG - Chr1:38257636-38257655 None:intergenic 15.0%
!!! ATATCATGTGTTTTTTTAAA+TGG + Chr1:38256202-38256221 MsG0180002420.01.T01:intron 15.0%
!!! ATATTCCCTAATTTTTTTTT+TGG + Chr1:38255981-38256000 MsG0180002420.01.T01:intron 15.0%
!! AAAAAAATTATGTTTCGACA+TGG + Chr1:38258084-38258103 MsG0180002420.01.T01:intron 20.0%
!! AAAGTATGAATGATTATTAC+CGG - Chr1:38257261-38257280 None:intergenic 20.0%
!! ATTACTAGTACATCAAAATA+TGG - Chr1:38256884-38256903 None:intergenic 20.0%
!! CACAGATATATATGTTTAAA+AGG + Chr1:38257659-38257678 MsG0180002420.01.T01:intron 20.0%
!! CATATAATTGACAAAAAATG+TGG - Chr1:38255929-38255948 None:intergenic 20.0%
!! CATTTGAACATAAAATCATT+GGG + Chr1:38260114-38260133 MsG0180002420.01.T01:CDS 20.0%
!! CCAAAAAAACTATATATGAT+CGG - Chr1:38257203-38257222 None:intergenic 20.0%
!! CTTCTCATAAATATAACTAT+AGG - Chr1:38257637-38257656 None:intergenic 20.0%
!! TAATACATATACGAAAAGAA+GGG - Chr1:38255520-38255539 None:intergenic 20.0%
!! TCATTTGAACATAAAATCAT+TGG + Chr1:38260113-38260132 MsG0180002420.01.T01:CDS 20.0%
!! TCTCATAAATATAACTATAG+GGG - Chr1:38257635-38257654 None:intergenic 20.0%
!! TTAATACATATACGAAAAGA+AGG - Chr1:38255521-38255540 None:intergenic 20.0%
!! TTATAGTTCAGAAATTGAAA+TGG - Chr1:38257092-38257111 None:intergenic 20.0%
!!! AATGAAGAATATTTTCATTC+TGG + Chr1:38256904-38256923 MsG0180002420.01.T01:intron 20.0%
!!! AATGATTTTATGTTCAAATG+AGG - Chr1:38260114-38260133 None:intergenic 20.0%
!!! ATTTGTCTGTATAATTTGTT+TGG + Chr1:38257773-38257792 MsG0180002420.01.T01:intron 20.0%
!!! ATTTTCAAGTTCATTTTCTA+AGG - Chr1:38255229-38255248 None:intergenic 20.0%
!!! GATTTTGTCTTACTAATTTA+AGG + Chr1:38257742-38257761 MsG0180002420.01.T01:intron 20.0%
!!! TCTTTTATACAATCTAAAAG+TGG + Chr1:38257985-38258004 MsG0180002420.01.T01:intron 20.0%
!!! TTTAAGTTCTCAACAAAAAA+TGG - Chr1:38257907-38257926 None:intergenic 20.0%
! AAACAACAAATCTACCTAAA+TGG + Chr1:38255570-38255589 MsG0180002420.01.T01:intron 25.0%
! AATACATATACGAAAAGAAG+GGG - Chr1:38255519-38255538 None:intergenic 25.0%
! AATTCTTTACTGTGTGATTA+TGG + Chr1:38255793-38255812 MsG0180002420.01.T01:intron 25.0%
! AGCAAATAACTTAGAATAAG+TGG + Chr1:38256248-38256267 MsG0180002420.01.T01:intron 25.0%
! AGTTTCAACTTTCAAAGATA+TGG + Chr1:38258291-38258310 MsG0180002420.01.T01:CDS 25.0%
! ATGGAAATGTTCCAAAATTT+CGG - Chr1:38257067-38257086 None:intergenic 25.0%
! CAAATAACTTAGAATAAGTG+GGG + Chr1:38256250-38256269 MsG0180002420.01.T01:intron 25.0%
! GCAAATAACTTAGAATAAGT+GGG + Chr1:38256249-38256268 MsG0180002420.01.T01:intron 25.0%
! TAAATTACGCACAAAATCAT+AGG - Chr1:38258126-38258145 None:intergenic 25.0%
! TTCAGAAATTGAAATGGAAA+TGG - Chr1:38257086-38257105 None:intergenic 25.0%
!! AAGATAAAAAGTAAGAGTGT+CGG + Chr1:38258166-38258185 MsG0180002420.01.T01:intron 25.0%
!! AATTCTTGAGAAACTTCTTT+TGG + Chr1:38258753-38258772 MsG0180002420.01.T01:CDS 25.0%
!! TGCGTAATTTAAAATTGTGT+GGG + Chr1:38258135-38258154 MsG0180002420.01.T01:intron 25.0%
!! TTTGATTTCTGGAAAGAATA+TGG + Chr1:38255417-38255436 MsG0180002420.01.T01:CDS 25.0%
!! TTTTACAAGCTTCATTTAGA+AGG + Chr1:38259871-38259890 MsG0180002420.01.T01:CDS 25.0%
!!! AATAGTATATAGTTTGCTTG+TGG + Chr1:38257854-38257873 MsG0180002420.01.T01:intron 25.0%
!!! AATTATTTTATTGGGTCTTG+AGG + Chr1:38256423-38256442 MsG0180002420.01.T01:intron 25.0%
!!! CATGAAATCTCATTTTTCAA+AGG + Chr1:38258027-38258046 MsG0180002420.01.T01:intron 25.0%
!!! CCGATCATATATAGTTTTTT+TGG + Chr1:38257200-38257219 MsG0180002420.01.T01:intron 25.0%
!!! GTTTTTTGTCAAATGAAATG+AGG - Chr1:38256337-38256356 None:intergenic 25.0%
!!! TTTTTTATACCAGGAAATGA+TGG - Chr1:38258952-38258971 None:intergenic 25.0%
AAAGAATATGGAGAGTCTAT+CGG + Chr1:38255429-38255448 MsG0180002420.01.T01:CDS 30.0%
AACATCAATACTACCATAAG+TGG - Chr1:38258512-38258531 None:intergenic 30.0%
AACTGGATACTGTTTATTCT+CGG - Chr1:38258926-38258945 None:intergenic 30.0%
AATATGCTGAGCTATTTAGA+TGG + Chr1:38259585-38259604 MsG0180002420.01.T01:CDS 30.0%
ACATGATCACAACATATCAT+TGG + Chr1:38256543-38256562 MsG0180002420.01.T01:intron 30.0%
ACCAACAGATATATTATCAG+AGG - Chr1:38258785-38258804 None:intergenic 30.0%
ACCTCTGATAATATATCTGT+TGG + Chr1:38258781-38258800 MsG0180002420.01.T01:CDS 30.0%
ACTTTCAAGCTTTGCATATT+AGG - Chr1:38258733-38258752 None:intergenic 30.0%
AGAAACTATAAACTGCTCAT+AGG - Chr1:38257513-38257532 None:intergenic 30.0%
AGTCAGAATATCCACATTTA+TGG - Chr1:38255173-38255192 None:intergenic 30.0%
ATATCTTTGCTCCAAAGAAA+TGG - Chr1:38255906-38255925 None:intergenic 30.0%
ATATGCTGAGCTATTTAGAT+GGG + Chr1:38259586-38259605 MsG0180002420.01.T01:CDS 30.0%
CTTGATCTAGTCTAATTAGT+TGG + Chr1:38256744-38256763 MsG0180002420.01.T01:intron 30.0%
GACAGCATATTAGTATTTGA+AGG - Chr1:38259828-38259847 None:intergenic 30.0%
TAGGCCTAGTTGTAATAAAA+AGG + Chr1:38259242-38259261 MsG0180002420.01.T01:CDS 30.0%
TGGAAATGTTCCAAAATTTC+GGG - Chr1:38257066-38257085 None:intergenic 30.0%
TGTATGCAAACGATGAATTT+CGG + Chr1:38258977-38258996 MsG0180002420.01.T01:CDS 30.0%
TTAGACTAGATCAAGTAGAT+AGG - Chr1:38256739-38256758 None:intergenic 30.0%
TTGAAACTTCTACAGTTAAC+TGG - Chr1:38258279-38258298 None:intergenic 30.0%
! AAGCTTCTTTTAGACAAAGA+AGG + Chr1:38258391-38258410 MsG0180002420.01.T01:CDS 30.0%
! ATATCTGATTGGTCGTTATA+TGG + Chr1:38260056-38260075 MsG0180002420.01.T01:CDS 30.0%
! ATTTCGGATGTTTTCTTTCA+AGG + Chr1:38258993-38259012 MsG0180002420.01.T01:CDS 30.0%
! CACACCTTTTTATTACAACT+AGG - Chr1:38259249-38259268 None:intergenic 30.0%
! GCAATTTTCAATCTAGTAGT+CGG + Chr1:38259517-38259536 MsG0180002420.01.T01:CDS 30.0%
! GTGCGTAATTTAAAATTGTG+TGG + Chr1:38258134-38258153 MsG0180002420.01.T01:intron 30.0%
! TATAAATTCCCCCGAAATTT+TGG + Chr1:38257053-38257072 MsG0180002420.01.T01:intron 30.0%
! TGGAGTACTAATTGCATAAT+TGG + Chr1:38256814-38256833 MsG0180002420.01.T01:intron 30.0%
!! AGGAAACAATGATGGATTTA+AGG + Chr1:38255146-38255165 MsG0180002420.01.T01:CDS 30.0%
!! GGAAACAATGATGGATTTAA+GGG + Chr1:38255147-38255166 MsG0180002420.01.T01:CDS 30.0%
!! TGGTAGTATTGATGTTATGA+AGG + Chr1:38258516-38258535 MsG0180002420.01.T01:CDS 30.0%
!!! CTTCATTGTTCCACTTTTTT+AGG + Chr1:38256686-38256705 MsG0180002420.01.T01:intron 30.0%
!!! GGGTGCAATGATATTTTAAT+GGG - Chr1:38255499-38255518 None:intergenic 30.0%
!!! TACATGCTGTTTTTTATACC+AGG - Chr1:38258961-38258980 None:intergenic 30.0%
!!! TAGCATAGCTGATTCTTTTT+TGG + Chr1:38258243-38258262 MsG0180002420.01.T01:intron 30.0%
AAAAAACAGAAGCCATTGCT+GGG - Chr1:38259746-38259765 None:intergenic 35.0%
AACAGCTCAAGTCATTCATA+AGG - Chr1:38259620-38259639 None:intergenic 35.0%
AAGAAGAGCCTAATCTATCA+TGG + Chr1:38260138-38260157 MsG0180002420.01.T01:CDS 35.0%
AAGAGGTCTTCAAGATTTGA+TGG - Chr1:38259687-38259706 None:intergenic 35.0%
AATGTGGATATTCTGACTCT+TGG + Chr1:38255175-38255194 MsG0180002420.01.T01:CDS 35.0%
ACAAAATTTCCGCAGAAAAG+AGG - Chr1:38259704-38259723 None:intergenic 35.0%
AGAAAGATGCTTAGCTATAC+AGG + Chr1:38255874-38255893 MsG0180002420.01.T01:intron 35.0%
AGAAGAGCCTAATCTATCAT+GGG + Chr1:38260139-38260158 MsG0180002420.01.T01:CDS 35.0%
ATAGGCTGGGAAAAATTAGA+TGG - Chr1:38259432-38259451 None:intergenic 35.0%
CAATCTAAAAGGACAGTTAG+AGG - Chr1:38255617-38255636 None:intergenic 35.0%
CATTAGGAGAATAAGACCAT+GGG - Chr1:38260034-38260053 None:intergenic 35.0%
CTCCTAATGAGATATCTGAT+TGG + Chr1:38260045-38260064 MsG0180002420.01.T01:CDS 35.0%
GAAATGTTCCAAAATTTCGG+GGG - Chr1:38257064-38257083 None:intergenic 35.0%
GAACTTGAAAATTGAGTCCA+TGG + Chr1:38255237-38255256 MsG0180002420.01.T01:intron 35.0%
GACCAATCAGATATCTCATT+AGG - Chr1:38260050-38260069 None:intergenic 35.0%
GATAAGTGTGAATATGCTCA+TGG + Chr1:38259165-38259184 MsG0180002420.01.T01:CDS 35.0%
GGAAATGTTCCAAAATTTCG+GGG - Chr1:38257065-38257084 None:intergenic 35.0%
GTGTATGAAACAATGAGATG+TGG - Chr1:38257172-38257191 None:intergenic 35.0%
GTTAGTTGTGTCAATAGCAA+TGG + Chr1:38258676-38258695 MsG0180002420.01.T01:CDS 35.0%
TATAGCACAAACAACACATG+AGG - Chr1:38257325-38257344 None:intergenic 35.0%
TCATTAGGAGAATAAGACCA+TGG - Chr1:38260035-38260054 None:intergenic 35.0%
TCCAATCATGAGATTGTGAA+CGG - Chr1:38259032-38259051 None:intergenic 35.0%
TCTATTAAGAGCTTACCAGT+GGG - Chr1:38255476-38255495 None:intergenic 35.0%
TTCAAGCTTTGCATATTAGG+AGG - Chr1:38258730-38258749 None:intergenic 35.0%
TTCCAGAAATCAAACTTGTC+AGG - Chr1:38255411-38255430 None:intergenic 35.0%
TTTCAATCTAGTAGTCGGTT+GGG + Chr1:38259522-38259541 MsG0180002420.01.T01:CDS 35.0%
! AGACTCTTTTCCAAGTTTAC+TGG + Chr1:38258336-38258355 MsG0180002420.01.T01:CDS 35.0%
! AGTTTGCTTGTGGAAATTCA+GGG + Chr1:38257864-38257883 MsG0180002420.01.T01:intron 35.0%
! CACATTGTTTTCGTCCATTT+AGG - Chr1:38255587-38255606 None:intergenic 35.0%
! TGCTTTTAATGCGATGGAAT+TGG + Chr1:38259353-38259372 MsG0180002420.01.T01:CDS 35.0%
! TTTTCAATCTAGTAGTCGGT+TGG + Chr1:38259521-38259540 MsG0180002420.01.T01:CDS 35.0%
!! AGTTCTGGTTTGCTTGAAAA+TGG + Chr1:38258838-38258857 MsG0180002420.01.T01:CDS 35.0%
!! ATTCAGGGCTAGCATATTTT+TGG + Chr1:38257879-38257898 MsG0180002420.01.T01:intron 35.0%
!! GGGGTGCAATGATATTTTAA+TGG - Chr1:38255500-38255519 None:intergenic 35.0%
!! TAGTTTGCTTGTGGAAATTC+AGG + Chr1:38257863-38257882 MsG0180002420.01.T01:intron 35.0%
!! TCTGTTGATTCTTCTAGTTC+TGG + Chr1:38258823-38258842 MsG0180002420.01.T01:CDS 35.0%
!!! TTTTTTCGCACACGATGAAA+AGG + Chr1:38259269-38259288 MsG0180002420.01.T01:CDS 35.0%
AAAATCCCTTCCTCTGTTGT+TGG + Chr1:38259996-38260015 MsG0180002420.01.T01:CDS 40.0%
AACTTCTCTGTATTCGTCTC+AGG - Chr1:38260191-38260210 None:intergenic 40.0%
AAGACGATGCTCATCATTCT+TGG - Chr1:38259853-38259872 None:intergenic 40.0%
AAGTATATCCCTCAACAGTG+TGG - Chr1:38255327-38255346 None:intergenic 40.0%
AATGAGATGTGGAAGAGAGA+AGG - Chr1:38257161-38257180 None:intergenic 40.0%
ACAGGTGTCTTCCATTTCTT+TGG + Chr1:38255892-38255911 MsG0180002420.01.T01:intron 40.0%
ACTAGCATCATCTGTAACCA+TGG - Chr1:38255257-38255276 None:intergenic 40.0%
ACTTGGACCCATGATAGATT+AGG - Chr1:38260149-38260168 None:intergenic 40.0%
AGACGATGCTCATCATTCTT+GGG - Chr1:38259852-38259871 None:intergenic 40.0%
AGCTTCTTCGATTAATGAGG+CGG + Chr1:38258414-38258433 MsG0180002420.01.T01:CDS 40.0%
AGGAGCTTCTTCGATTAATG+AGG + Chr1:38258411-38258430 MsG0180002420.01.T01:CDS 40.0%
ATATAGCAAGCAGCAAGAGA+TGG + Chr1:38255818-38255837 MsG0180002420.01.T01:intron 40.0%
ATCAATGACCACACTGTTGA+GGG + Chr1:38255316-38255335 MsG0180002420.01.T01:intron 40.0%
ATGAGATGTGGAAGAGAGAA+GGG - Chr1:38257160-38257179 None:intergenic 40.0%
ATGAGGATGCATTGTGCATT+TGG - Chr1:38260097-38260116 None:intergenic 40.0%
ATTTGGTACGGTCGACAAAA+TGG + Chr1:38258439-38258458 MsG0180002420.01.T01:CDS 40.0%
CAAGGACATGAGTCAATTGT+GGG - Chr1:38256938-38256957 None:intergenic 40.0%
CACACGATGAAAAGGAATTG+AGG + Chr1:38259277-38259296 MsG0180002420.01.T01:CDS 40.0%
CACTTTCTCTTACCATTGTC+TGG - Chr1:38255746-38255765 None:intergenic 40.0%
CCAATCATGAGATTGTGAAC+GGG - Chr1:38259031-38259050 None:intergenic 40.0%
CTAATGTTGTTGATGCTGTG+AGG + Chr1:38258629-38258648 MsG0180002420.01.T01:CDS 40.0%
CTCAGCATATTGAAGTCTTC+AGG - Chr1:38259576-38259595 None:intergenic 40.0%
GAAAAAACAGAAGCCATTGC+TGG - Chr1:38259747-38259766 None:intergenic 40.0%
GAACACGACTCTGTAAAGAT+AGG + Chr1:38259223-38259242 MsG0180002420.01.T01:CDS 40.0%
GAAGCAAGTACCAGTAAACT+TGG - Chr1:38258349-38258368 None:intergenic 40.0%
GAAGGTTATACTCTCGTATC+CGG + Chr1:38258534-38258553 MsG0180002420.01.T01:CDS 40.0%
GAGGAAATGCAGACATTTGA+GGG - Chr1:38259920-38259939 None:intergenic 40.0%
GCACTATATTTGTGTTGTGC+AGG + Chr1:38255686-38255705 MsG0180002420.01.T01:intron 40.0%
GCTGGGAAAAATTAGATGGA+TGG - Chr1:38259428-38259447 None:intergenic 40.0%
GGAACAACAATGAGATCAAC+AGG - Chr1:38258709-38258728 None:intergenic 40.0%
GGATTTAAGGGCCATAAATG+TGG + Chr1:38255159-38255178 MsG0180002420.01.T01:CDS 40.0%
GGGAATTATTCTGTAGGACT+TGG - Chr1:38260166-38260185 None:intergenic 40.0%
GTAAATTTCGAATCCACCAC+AGG - Chr1:38258904-38258923 None:intergenic 40.0%
GTCTATTAAGAGCTTACCAG+TGG - Chr1:38255477-38255496 None:intergenic 40.0%
TAGGAAACGGCCTAAAAAAG+TGG - Chr1:38256699-38256718 None:intergenic 40.0%
TCCTTGCTCATTCCAATCAT+TGG + Chr1:38256952-38256971 MsG0180002420.01.T01:intron 40.0%
TCTTTGACTGTCAAGTGCAA+GGG - Chr1:38255378-38255397 None:intergenic 40.0%
TGAGCACAAAACTCCTTTGA+TGG + Chr1:38258480-38258499 MsG0180002420.01.T01:CDS 40.0%
TGAGGAAATGCAGACATTTG+AGG - Chr1:38259921-38259940 None:intergenic 40.0%
TGATTATTACCGGTAACCGA+TGG - Chr1:38257251-38257270 None:intergenic 40.0%
! AACAACAGAGGAAGGGATTT+TGG - Chr1:38259997-38260016 None:intergenic 40.0%
! AATGAGATGCCATTTCCAGA+AGG - Chr1:38259459-38259478 None:intergenic 40.0%
! AGCTGCATAGTGTTAGTTCT+AGG + Chr1:38259961-38259980 MsG0180002420.01.T01:CDS 40.0%
! ATAGCAGCTGATTCATGTGA+AGG - Chr1:38259771-38259790 None:intergenic 40.0%
! ATGAGATGCCATTTCCAGAA+GGG - Chr1:38259458-38259477 None:intergenic 40.0%
! CGGAAATTTTGTCATCTCCT+AGG + Chr1:38259712-38259731 MsG0180002420.01.T01:CDS 40.0%
! GCTGCAATGAATCTTTTGGT+CGG + Chr1:38259378-38259397 MsG0180002420.01.T01:CDS 40.0%
! TAGCAGCTGATTCATGTGAA+GGG - Chr1:38259770-38259789 None:intergenic 40.0%
! TCTTGAAGACCTCTTTTCTG+CGG + Chr1:38259692-38259711 MsG0180002420.01.T01:CDS 40.0%
! TGTGAGGATTCTTATTTCCG+CGG + Chr1:38258645-38258664 MsG0180002420.01.T01:CDS 40.0%
!! AGTGTTAGTTCTAGGGAACT+TGG + Chr1:38259969-38259988 MsG0180002420.01.T01:CDS 40.0%
!! GCTGCATAGTGTTAGTTCTA+GGG + Chr1:38259962-38259981 MsG0180002420.01.T01:CDS 40.0%
!! TGCATCTGCTTTTAATGCGA+TGG + Chr1:38259347-38259366 MsG0180002420.01.T01:CDS 40.0%
AAAGCAGATGCAGATGAACG+TGG - Chr1:38259339-38259358 None:intergenic 45.0%
AAGCCCCTTTCCTGAATTCA+GGG - Chr1:38259134-38259153 None:intergenic 45.0%
AATAAGTGGGGCAACACTAG+GGG + Chr1:38256262-38256281 MsG0180002420.01.T01:intron 45.0%
AATGAGGCGGGAATTTGGTA+CGG + Chr1:38258427-38258446 MsG0180002420.01.T01:CDS 45.0%
ACAACTAACATTTGCACCCG+CGG - Chr1:38258665-38258684 None:intergenic 45.0%
ACGATCGTCATCTTCTCCAT+CGG + Chr1:38257232-38257251 MsG0180002420.01.T01:intron 45.0%
AGAATAAGTGGGGCAACACT+AGG + Chr1:38256260-38256279 MsG0180002420.01.T01:intron 45.0%
AGTCGTGTTCGATACTGATC+TGG - Chr1:38259213-38259232 None:intergenic 45.0%
ATGGAAGTAAGAGACTGACG+GGG - Chr1:38259409-38259428 None:intergenic 45.0%
ATGTGGAAGAGAGAAGGGTT+AGG - Chr1:38257155-38257174 None:intergenic 45.0%
ATTGCTGGGTCAGAATACCT+AGG - Chr1:38259732-38259751 None:intergenic 45.0%
ATTGTGAACGGGAACAACGA+AGG - Chr1:38259020-38259039 None:intergenic 45.0%
CAATGAGCCATCTGCATTCT+TGG - Chr1:38255769-38255788 None:intergenic 45.0%
CACTAGGGGTCTAATTGGTA+AGG + Chr1:38256276-38256295 MsG0180002420.01.T01:intron 45.0%
CAGGTGGGGAATTATTCTGT+AGG - Chr1:38260172-38260191 None:intergenic 45.0%
CATCAATGACCACACTGTTG+AGG + Chr1:38255315-38255334 MsG0180002420.01.T01:intron 45.0%
CCAGTTGATCCATCATTTCC+TGG + Chr1:38258940-38258959 MsG0180002420.01.T01:CDS 45.0%
CCCGTTCACAATCTCATGAT+TGG + Chr1:38259028-38259047 MsG0180002420.01.T01:CDS 45.0%
CGAGGTGAAGGAAACAATGA+TGG + Chr1:38255138-38255157 MsG0180002420.01.T01:CDS 45.0%
CGATTAATGAGGCGGGAATT+TGG + Chr1:38258422-38258441 MsG0180002420.01.T01:CDS 45.0%
CTCATGGAATATTCGAGTGC+TGG + Chr1:38259181-38259200 MsG0180002420.01.T01:CDS 45.0%
CTCTTTGACTGTCAAGTGCA+AGG - Chr1:38255379-38255398 None:intergenic 45.0%
CTTGCCCTGAATTCAGGAAA+GGG + Chr1:38259127-38259146 MsG0180002420.01.T01:CDS 45.0%
GAATAAGTGGGGCAACACTA+GGG + Chr1:38256261-38256280 MsG0180002420.01.T01:intron 45.0%
GACTCTTGGTCAGTATTTGC+AGG + Chr1:38255189-38255208 MsG0180002420.01.T01:intron 45.0%
GATGGAAGTAAGAGACTGAC+GGG - Chr1:38259410-38259429 None:intergenic 45.0%
GCAAGGACATGAGTCAATTG+TGG - Chr1:38256939-38256958 None:intergenic 45.0%
GCCAATGATTGGAATGAGCA+AGG - Chr1:38256956-38256975 None:intergenic 45.0%
GCTTCTCACAATGACTCTGA+AGG + Chr1:38258364-38258383 MsG0180002420.01.T01:CDS 45.0%
GCTTCTTCGATTAATGAGGC+GGG + Chr1:38258415-38258434 MsG0180002420.01.T01:CDS 45.0%
GGATGGAAGTAAGAGACTGA+CGG - Chr1:38259411-38259430 None:intergenic 45.0%
GTCGTGTTCGATACTGATCT+GGG - Chr1:38259212-38259231 None:intergenic 45.0%
TAAGTGGCAGCAACCATCAA+AGG - Chr1:38258496-38258515 None:intergenic 45.0%
TACGATCTTCATACCGAGCT+GGG + Chr1:38255709-38255728 MsG0180002420.01.T01:CDS 45.0%
TAGGTATTCTGACCCAGCAA+TGG + Chr1:38259731-38259750 MsG0180002420.01.T01:CDS 45.0%
TCTCTGTATTCGTCTCAGGT+GGG - Chr1:38260187-38260206 None:intergenic 45.0%
TGATGTGAATTCCGCTTGCA+TGG + Chr1:38258561-38258580 MsG0180002420.01.T01:CDS 45.0%
TGGGCACAGCAAAATGTTCT+AGG + Chr1:38259492-38259511 MsG0180002420.01.T01:CDS 45.0%
TTCTCTGTATTCGTCTCAGG+TGG - Chr1:38260188-38260207 None:intergenic 45.0%
TTGCCCTGAATTCAGGAAAG+GGG + Chr1:38259128-38259147 MsG0180002420.01.T01:CDS 45.0%
! ACTTTTGTTCGCCATGCAAG+CGG - Chr1:38258575-38258594 None:intergenic 45.0%
! AGCAGCTGATTCATGTGAAG+GGG - Chr1:38259769-38259788 None:intergenic 45.0%
! CGCCTGACAAGTTTGATTTC+TGG + Chr1:38255406-38255425 MsG0180002420.01.T01:CDS 45.0%
! GGCTGCTGCAATGAATCTTT+TGG + Chr1:38259374-38259393 MsG0180002420.01.T01:CDS 45.0%
! GGTTTTCGTTATGTAGCCAG+CGG + Chr1:38255450-38255469 MsG0180002420.01.T01:CDS 45.0%
! GTGAGGATTCTTATTTCCGC+GGG + Chr1:38258646-38258665 MsG0180002420.01.T01:CDS 45.0%
! TCATCTTCTCCATCGGTTAC+CGG + Chr1:38257239-38257258 MsG0180002420.01.T01:intron 45.0%
! TCCTAGTTCTTGTCGGTCTA+AGG + Chr1:38259653-38259672 MsG0180002420.01.T01:CDS 45.0%
! TCTCATTCTCAAGTGCTGCT+TGG + Chr1:38259472-38259491 MsG0180002420.01.T01:CDS 45.0%
! TGAGATGCCATTTCCAGAAG+GGG - Chr1:38259457-38259476 None:intergenic 45.0%
! TTGATGGTTGCTGCCACTTA+TGG + Chr1:38258496-38258515 MsG0180002420.01.T01:CDS 45.0%
!! CCAGGAAATGATGGATCAAC+TGG - Chr1:38258943-38258962 None:intergenic 45.0%
!! CTCATTCTCAAGTGCTGCTT+GGG + Chr1:38259473-38259492 MsG0180002420.01.T01:CDS 45.0%
!! GAAAGTGCCAAGAATGCAGA+TGG + Chr1:38255759-38255778 MsG0180002420.01.T01:intron 45.0%
!! TTGAGCTGTTTCTCACAACC+CGG + Chr1:38259630-38259649 MsG0180002420.01.T01:CDS 45.0%
AAGGTGGTGACACTGAAGGA+GGG - Chr1:38258879-38258898 None:intergenic 50.0%
AATTCAGGAAAGGGGCTTGC+AGG + Chr1:38259136-38259155 MsG0180002420.01.T01:CDS 50.0%
ACCAGAAGCAGCACAGTGAA+GGG - Chr1:38258602-38258621 None:intergenic 50.0%
ACGATCTTCATACCGAGCTG+GGG + Chr1:38255710-38255729 MsG0180002420.01.T01:CDS 50.0%
ACGCCAGATCCAGTTAACGA+AGG - Chr1:38259309-38259328 None:intergenic 50.0%
ACTGTCAAGTGCAAGGGAGT+CGG - Chr1:38255372-38255391 None:intergenic 50.0%
AGACATTTGAGGGCTCAGTG+GGG - Chr1:38259910-38259929 None:intergenic 50.0%
AGACCGACAAGAACTAGGAC+CGG - Chr1:38259652-38259671 None:intergenic 50.0%
ATATGTGCATCCCGGAGAGA+AGG + Chr1:38259062-38259081 MsG0180002420.01.T01:CDS 50.0%
CAAGCCCCTTTCCTGAATTC+AGG - Chr1:38259135-38259154 None:intergenic 50.0%
CAGACATTTGAGGGCTCAGT+GGG - Chr1:38259911-38259930 None:intergenic 50.0%
CCTTGCCCTGAATTCAGGAA+AGG + Chr1:38259126-38259145 MsG0180002420.01.T01:CDS 50.0%
CCTTTCCTGAATTCAGGGCA+AGG - Chr1:38259129-38259148 None:intergenic 50.0%
CTCTGTATTCGTCTCAGGTG+GGG - Chr1:38260186-38260205 None:intergenic 50.0%
CTCTGTTGTTGGACCACCTA+CGG + Chr1:38260007-38260026 MsG0180002420.01.T01:CDS 50.0%
CTGCCTTCGTTAACTGGATC+TGG + Chr1:38259303-38259322 MsG0180002420.01.T01:CDS 50.0%
GAATAAGACCATGGGTCCGT+AGG - Chr1:38260026-38260045 None:intergenic 50.0%
GAGTGTCCATATGTGCATCC+CGG + Chr1:38259054-38259073 MsG0180002420.01.T01:CDS 50.0%
GATCCAGTTAACGAAGGCAG+TGG - Chr1:38259303-38259322 None:intergenic 50.0%
GATGCAGATGAACGTGGTGA+AGG - Chr1:38259333-38259352 None:intergenic 50.0%
GCCTTAGACCGACAAGAACT+AGG - Chr1:38259657-38259676 None:intergenic 50.0%
GCGGAATTCACATCAACCTC+CGG - Chr1:38258556-38258575 None:intergenic 50.0%
GGCAACACTAGGGGTCTAAT+TGG + Chr1:38256271-38256290 MsG0180002420.01.T01:intron 50.0%
GGTTATACTCTCGTATCCGG+AGG + Chr1:38258537-38258556 MsG0180002420.01.T01:CDS 50.0%
GTACGATCTTCATACCGAGC+TGG + Chr1:38255708-38255727 MsG0180002420.01.T01:CDS 50.0%
GTAGTGCGTGTGCCAATGAT+TGG - Chr1:38256967-38256986 None:intergenic 50.0%
GTGGTCCAACAACAGAGGAA+GGG - Chr1:38260004-38260023 None:intergenic 50.0%
TGGAAGTAAGAGACTGACGG+GGG - Chr1:38259408-38259427 None:intergenic 50.0%
TTCGAATCCACCACAGGAGA+AGG - Chr1:38258898-38258917 None:intergenic 50.0%
TTCTCTCCGGGATGCACATA+TGG - Chr1:38259063-38259082 None:intergenic 50.0%
! AACCCGGTCCTAGTTCTTGT+CGG + Chr1:38259646-38259665 MsG0180002420.01.T01:CDS 50.0%
! CGAATCTGATGACGAGGTGA+AGG + Chr1:38255126-38255145 MsG0180002420.01.T01:CDS 50.0%
! CGGTCGACAAAATGGCTCTA+CGG + Chr1:38258447-38258466 MsG0180002420.01.T01:CDS 50.0%
! GAGATGCCATTTCCAGAAGG+GGG - Chr1:38259456-38259475 None:intergenic 50.0%
!! TTCACTGTGCTGCTTCTGGT+GGG + Chr1:38258602-38258621 MsG0180002420.01.T01:CDS 50.0%
AGGCCACTGCCTTCGTTAAC+TGG + Chr1:38259297-38259316 MsG0180002420.01.T01:CDS 55.0%
AGTGTCACCACCTTCTCCTG+TGG + Chr1:38258885-38258904 MsG0180002420.01.T01:CDS 55.0%
CACCAGAAGCAGCACAGTGA+AGG - Chr1:38258603-38258622 None:intergenic 55.0%
CAGGCTGAATGTTGCAAGCG+CGG - Chr1:38259557-38259576 None:intergenic 55.0%
CCTCGTCATCAGATTCGCCA+AGG - Chr1:38255123-38255142 None:intergenic 55.0%
CGTAGGTGGTCCAACAACAG+AGG - Chr1:38260009-38260028 None:intergenic 55.0%
GAAGGTGGTGACACTGAAGG+AGG - Chr1:38258880-38258899 None:intergenic 55.0%
GAATCCACCACAGGAGAAGG+TGG - Chr1:38258895-38258914 None:intergenic 55.0%
GACCGACAAGAACTAGGACC+GGG - Chr1:38259651-38259670 None:intergenic 55.0%
GCAGACATTTGAGGGCTCAG+TGG - Chr1:38259912-38259931 None:intergenic 55.0%
GCATGCCTTGCCCTGAATTC+AGG + Chr1:38259121-38259140 MsG0180002420.01.T01:CDS 55.0%
GGAGAAGGTGGTGACACTGA+AGG - Chr1:38258883-38258902 None:intergenic 55.0%
GGAGCTCTTCGTCCAGACAA+TGG + Chr1:38255731-38255750 MsG0180002420.01.T01:CDS 55.0%
GGTGACACTGAAGGAGGGTA+TGG - Chr1:38258874-38258893 None:intergenic 55.0%
GGTGGTCCAACAACAGAGGA+AGG - Chr1:38260005-38260024 None:intergenic 55.0%
TAAGACCATGGGTCCGTAGG+TGG - Chr1:38260023-38260042 None:intergenic 55.0%
! CCATTTCCAGAAGGGGGCAT+AGG - Chr1:38259450-38259469 None:intergenic 55.0%
! CCTATGCCCCCTTCTGGAAA+TGG + Chr1:38259447-38259466 MsG0180002420.01.T01:CDS 55.0%
! CCTTGGCGAATCTGATGACG+AGG + Chr1:38255120-38255139 MsG0180002420.01.T01:CDS 55.0%
!! CTTCACTGTGCTGCTTCTGG+TGG + Chr1:38258601-38258620 MsG0180002420.01.T01:CDS 55.0%
!! TGCTGCTGTTTCTCGCGATG+AGG - Chr1:38259939-38259958 None:intergenic 55.0%
AGGAAAGGGGCTTGCAGGCA+TGG + Chr1:38259141-38259160 MsG0180002420.01.T01:CDS 60.0%
AGGCTCGGAGGAGAGACCTT+AGG + Chr1:38259082-38259101 MsG0180002420.01.T01:CDS 60.0%
CTCGGAGGAGAGACCTTAGG+AGG + Chr1:38259085-38259104 MsG0180002420.01.T01:CDS 60.0%
GTCACCACCTTCTCCTGTGG+TGG + Chr1:38258888-38258907 MsG0180002420.01.T01:CDS 60.0%
TCTCCTCCGAGCCTTCTCTC+CGG - Chr1:38259076-38259095 None:intergenic 60.0%
TGCATCCCGGAGAGAAGGCT+CGG + Chr1:38259067-38259086 MsG0180002420.01.T01:CDS 60.0%
TTATGTAGCCAGCGGCCCAC+TGG + Chr1:38255458-38255477 MsG0180002420.01.T01:CDS 60.0%
TTGGACCACCTACGGACCCA+TGG + Chr1:38260015-38260034 MsG0180002420.01.T01:CDS 60.0%
! TCCAGAAGGGGGCATAGGCT+GGG - Chr1:38259445-38259464 None:intergenic 60.0%
! TTCCAGAAGGGGGCATAGGC+TGG - Chr1:38259446-38259465 None:intergenic 60.0%
!! GCCCTTCACTGTGCTGCTTC+TGG + Chr1:38258598-38258617 MsG0180002420.01.T01:CDS 60.0%
AGAGCTTACCAGTGGGCCGC+TGG - Chr1:38255469-38255488 None:intergenic 65.0%
ATCCCGGAGAGAAGGCTCGG+AGG + Chr1:38259070-38259089 MsG0180002420.01.T01:CDS 65.0%
CTCCTCCGAGCCTTCTCTCC+GGG - Chr1:38259075-38259094 None:intergenic 65.0%
GGACGAAGAGCTCCCCAGCT+CGG - Chr1:38255725-38255744 None:intergenic 65.0%
TCCCAGCCTATGCCCCCTTC+TGG + Chr1:38259441-38259460 MsG0180002420.01.T01:CDS 65.0%
TGAGGGCTCAGTGGGGAGAC+TGG - Chr1:38259903-38259922 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38255112 38260250 38255112 ID=MsG0180002420.01;Name=MsG0180002420.01
Chr1 mRNA 38255112 38260250 38255112 ID=MsG0180002420.01.T01;Parent=MsG0180002420.01;Name=MsG0180002420.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.33|0|1|1|1|4|0|729
Chr1 exon 38255112 38255196 38255112 ID=MsG0180002420.01.T01:exon:13003;Parent=MsG0180002420.01.T01
Chr1 exon 38255391 38255479 38255391 ID=MsG0180002420.01.T01:exon:13002;Parent=MsG0180002420.01.T01
Chr1 exon 38255708 38255752 38255708 ID=MsG0180002420.01.T01:exon:13001;Parent=MsG0180002420.01.T01
Chr1 exon 38258280 38260250 38258280 ID=MsG0180002420.01.T01:exon:13000;Parent=MsG0180002420.01.T01
Chr1 CDS 38255112 38255196 38255112 ID=MsG0180002420.01.T01:cds;Parent=MsG0180002420.01.T01
Chr1 CDS 38255391 38255479 38255391 ID=MsG0180002420.01.T01:cds;Parent=MsG0180002420.01.T01
Chr1 CDS 38255708 38255752 38255708 ID=MsG0180002420.01.T01:cds;Parent=MsG0180002420.01.T01
Chr1 CDS 38258280 38260250 38258280 ID=MsG0180002420.01.T01:cds;Parent=MsG0180002420.01.T01
Gene Sequence

>MsG0180002420.01.T01

ATGTTAGGCCTTGGCGAATCTGATGACGAGGTGAAGGAAACAATGATGGATTTAAGGGCCATAAATGTGGATATTCTGACTCTTGTCAAAGAGTATGTTACGCCTGACAAGTTTGATTTCTGGAAAGAATATGGAGAGTCTATCGGTTTTCGTTATGTAGCCAGCGGCCCACTGGTACGATCTTCATACCGAGCTGGGGAGCTCTTCGTCCAGACAATGTTAACTGTAGAAGTTTCAACTTTCAAAGATATGGAAACACTAGCTGTTAATATTAAAGACTCTTTTCCAAGTTTACTGGTACTTGCTTCTCACAATGACTCTGAAGGTTTTAAGCTTCTTTTAGACAAAGAAGGAGCTTCTTCGATTAATGAGGCGGGAATTTGGTACGGTCGACAAAATGGCTCTACGGAGATTGTTCTTGAGCACAAAACTCCTTTGATGGTTGCTGCCACTTATGGTAGTATTGATGTTATGAAGGTTATACTCTCGTATCCGGAGGTTGATGTGAATTCCGCTTGCATGGCGAACAAAAGTACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGCTAATGTTGTTGATGCTGTGAGGATTCTTATTTCCGCGGGTGCAAATGTTAGTTGTGTCAATAGCAATGGAAATCGTCCTGTTGATCTCATTGTTGTTCCTCCTAATATGCAAAGCTTGAAAGTAATTCTTGAGAAACTTCTTTTGGATAATACCTCTGATAATATATCTGTTGGTGATTTCTCTATTTCAGCGTCTGTTGATTCTTCTAGTTCTGGTTTGCTTGAAAATGGAATGTCTTTGCCATACCCTCCTTCAGTGTCACCACCTTCTCCTGTGGTGGATTCGAAATTTACCGAGAATAAACAGTATCCAGTTGATCCATCATTTCCTGGTATAAAAAACAGCATGTATGCAAACGATGAATTTCGGATGTTTTCTTTCAAGGTCCTTCGTTGTTCCCGTTCACAATCTCATGATTGGACTGAGTGTCCATATGTGCATCCCGGAGAGAAGGCTCGGAGGAGAGACCTTAGGAGGTTCTCTTACAGCTGCATGCCTTGCCCTGAATTCAGGAAAGGGGCTTGCAGGCATGGAGATAAGTGTGAATATGCTCATGGAATATTCGAGTGCTGGCTACACCCAGATCAGTATCGAACACGACTCTGTAAAGATAGGCCTAGTTGTAATAAAAAGGTGTGTTTTTTCGCACACGATGAAAAGGAATTGAGGCCACTGCCTTCGTTAACTGGATCTGGCGTTCCTTCACCACGTTCATCTGCATCTGCTTTTAATGCGATGGAATTGGCTGCTGCAATGAATCTTTTGGTCGGTTCACCCCCGTCAGTCTCTTACTTCCATCCATCTAATTTTTCCCAGCCTATGCCCCCTTCTGGAAATGGCATCTCATTCTCAAGTGCTGCTTGGGCACAGCAAAATGTTCTAGGAAGCAATTTTCAATCTAGTAGTCGGTTGGGATCTTCTCTCCGCGCTTGCAACATTCAGCCTGAAGACTTCAATATGCTGAGCTATTTAGATGGGCAGCAGCACCTTATGAATGACTTGAGCTGTTTCTCACAACCCGGTCCTAGTTCTTGTCGGTCTAAGGCACTAACTCCATCAAATCTTGAAGACCTCTTTTCTGCGGAAATTTTGTCATCTCCTAGGTATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCTTCACATGAATCAGCTGCTATGAATGAGCTTAAACAATTTCAAAATATGTTATCGCCTTCAAATACTAATATGCTGTCTCCCAAGAATGATGAGCATCGTCTTTTACAAGCTTCATTTAGAAGGCTTGAACCAGTCTCCCCACTGAGCCCTCAAATGTCTGCATTTCCTCATCGCGAGAAACAGCAGCAACAGCTGCATAGTGTTAGTTCTAGGGAACTTGGTTCCAAAATCCCTTCCTCTGTTGTTGGACCACCTACGGACCCATGGTCTTATTCTCCTAATGAGATATCTGATTGGTCGTTATATGGAGACGAACTAAGTCGCCAAATGCACAATGCATCCTCATTTGAACATAAAATCATTGGGAAAGAAGAGCCTAATCTATCATGGGTCCAAGTCCTACAGAATAATTCCCCACCTGAGACGAATACAGAGAAGTTTGCATCTTCTGCTATATTGAATTCCAATTCGCAAATTTAA
Protein sequence

>MsG0180002420.01.T01

MLGLGESDDEVKETMMDLRAINVDILTLVKEYVTPDKFDFWKEYGESIGFRYVASGPLVRSSYRAGELFVQTMLTVEVSTFKDMETLAVNIKDSFPSLLVLASHNDSEGFKLLLDKEGASSINEAGIWYGRQNGSTEIVLEHKTPLMVAATYGSIDVMKVILSYPEVDVNSACMANKSTALHCAASGGSANVVDAVRILISAGANVSCVNSNGNRPVDLIVVPPNMQSLKVILEKLLLDNTSDNISVGDFSISASVDSSSSGLLENGMSLPYPPSVSPPSPVVDSKFTENKQYPVDPSFPGIKNSMYANDEFRMFSFKVLRCSRSQSHDWTECPYVHPGEKARRRDLRRFSYSCMPCPEFRKGACRHGDKCEYAHGIFECWLHPDQYRTRLCKDRPSCNKKVCFFAHDEKELRPLPSLTGSGVPSPRSSASAFNAMELAAAMNLLVGSPPSVSYFHPSNFSQPMPPSGNGISFSSAAWAQQNVLGSNFQSSSRLGSSLRACNIQPEDFNMLSYLDGQQHLMNDLSCFSQPGPSSCRSKALTPSNLEDLFSAEILSSPRYSDPAMASVFSPSHESAAMNELKQFQNMLSPSNTNMLSPKNDEHRLLQASFRRLEPVSPLSPQMSAFPHREKQQQQLHSVSSRELGSKIPSSVVGPPTDPWSYSPNEISDWSLYGDELSRQMHNASSFEHKIIGKEEPNLSWVQVLQNNSPPETNTEKFASSAILNSNSQI*