AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003030.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003030.01.T01 MTR_0136s0010 86.679 533 24 4 1 495 1 524 0.0 922
MsG0180003030.01.T01 MTR_7g093450 55.172 609 146 10 1 492 1 599 0.0 602
MsG0180003030.01.T01 MTR_5g059400 44.794 509 209 9 25 481 28 516 3.09e-136 404
MsG0180003030.01.T01 MTR_1g116130 44.794 509 209 9 25 481 28 516 3.09e-136 404
MsG0180003030.01.T01 MTR_5g033800 44.796 442 197 7 80 481 50 484 8.01e-122 365
MsG0180003030.01.T01 MTR_8g069790 51.462 342 127 3 178 481 177 517 4.96e-121 365
MsG0180003030.01.T01 MTR_4g121560 49.857 349 133 5 174 482 109 455 8.64e-121 362
MsG0180003030.01.T01 MTR_4g126950 39.750 400 191 5 129 489 67 455 2.29e-101 312
MsG0180003030.01.T01 MTR_7g109550 43.529 340 145 5 179 480 137 467 3.13e-96 299
MsG0180003030.01.T01 MTR_7g094750 39.669 363 158 9 179 491 91 442 1.60e-81 260
MsG0180003030.01.T01 MTR_5g033800 48.207 251 124 4 114 362 81 327 3.85e-75 241
MsG0180003030.01.T01 MTR_2g022560 37.536 349 165 7 179 481 97 438 1.46e-70 232
MsG0180003030.01.T01 MTR_3g464570 35.530 349 165 10 179 481 43 377 3.15e-70 229
MsG0180003030.01.T01 MTR_1g050448 37.982 337 162 9 178 480 52 375 3.98e-70 228
MsG0180003030.01.T01 MTR_1g058380 36.261 353 175 8 179 487 55 401 9.92e-70 228
MsG0180003030.01.T01 MTR_1g112210 37.609 343 164 8 174 480 54 382 1.32e-68 224
MsG0180003030.01.T01 MTR_4g014440 36.011 361 173 10 174 483 57 410 2.24e-68 225
MsG0180003030.01.T01 MTR_5g071350 34.262 359 164 10 179 481 58 400 1.17e-67 223
MsG0180003030.01.T01 MTR_1g112210 37.026 343 153 8 174 480 54 369 4.20e-67 220
MsG0180003030.01.T01 MTR_4g087730 34.195 348 167 8 174 482 40 364 1.65e-65 216
MsG0180003030.01.T01 MTR_3g071650 34.571 350 175 8 179 481 89 431 2.66e-65 218
MsG0180003030.01.T01 MTR_7g070060 36.364 352 166 12 178 478 63 407 6.18e-65 216
MsG0180003030.01.T01 MTR_2g015720 34.694 343 161 8 179 482 42 360 2.50e-64 213
MsG0180003030.01.T01 MTR_4g079700 34.426 366 175 10 156 480 22 363 2.54e-62 207
MsG0180003030.01.T01 MTR_8g093530 36.103 349 166 7 176 483 87 419 5.58e-62 209
MsG0180003030.01.T01 MTR_2g091175 35.756 344 156 10 178 481 49 367 7.44e-62 206
MsG0180003030.01.T01 MTR_4g014430 31.873 411 221 10 111 477 48 443 9.63e-62 208
MsG0180003030.01.T01 MTR_5g083260 33.714 350 178 9 179 481 83 425 1.19e-60 205
MsG0180003030.01.T01 MTR_4g088030 33.236 343 167 9 179 482 33 352 3.30e-60 202
MsG0180003030.01.T01 MTR_8g463790 32.386 352 186 10 179 486 71 414 9.05e-59 200
MsG0180003030.01.T01 MTR_4g016940 33.048 351 179 10 178 480 85 427 1.20e-58 200
MsG0180003030.01.T01 MTR_3g021060 33.236 343 165 10 178 480 45 363 4.97e-58 196
MsG0180003030.01.T01 MTR_2g073500 36.047 344 153 12 179 481 29 346 6.40e-58 196
MsG0180003030.01.T01 MTR_2g073510 36.364 341 154 11 178 477 32 350 6.73e-58 196
MsG0180003030.01.T01 MTR_3g070900 31.818 352 184 8 179 481 106 450 9.90e-58 198
MsG0180003030.01.T01 MTR_1g111010 36.443 343 160 14 178 487 31 348 2.71e-57 194
MsG0180003030.01.T01 MTR_3g090120 32.658 395 205 8 129 483 89 462 7.41e-57 196
MsG0180003030.01.T01 MTR_7g094750 47.849 186 92 2 179 361 91 274 1.93e-56 191
MsG0180003030.01.T01 MTR_3g049330 33.528 343 166 9 179 481 31 351 2.93e-55 189
MsG0180003030.01.T01 MTR_3g035830 31.871 342 169 9 179 480 31 348 8.14e-55 187
MsG0180003030.01.T01 MTR_5g034810 33.528 343 164 9 179 481 35 353 4.91e-53 183
MsG0180003030.01.T01 MTR_5g082880 30.398 352 192 9 179 481 165 512 1.88e-52 185
MsG0180003030.01.T01 MTR_3g021090 31.176 340 166 7 179 476 31 344 5.29e-51 179
MsG0180003030.01.T01 MTR_8g099300 32.500 360 165 11 178 476 73 415 2.05e-46 167
MsG0180003030.01.T01 MTR_6g061710 25.373 536 310 16 17 489 14 522 1.49e-45 167
MsG0180003030.01.T01 MTR_1g076690 28.726 369 186 12 179 486 223 575 2.37e-45 167
MsG0180003030.01.T01 MTR_5g035080 31.565 377 178 13 179 494 75 432 4.75e-45 164
MsG0180003030.01.T01 MTR_3g464570 33.333 285 130 10 243 481 3 273 1.21e-44 158
MsG0180003030.01.T01 MTR_7g019120 29.457 387 202 10 155 483 50 423 9.52e-43 157
MsG0180003030.01.T01 MTR_7g070060 33.893 298 140 11 231 478 15 305 8.38e-42 152
MsG0180003030.01.T01 MTR_5g035150 30.939 362 185 10 179 486 85 435 2.91e-41 153
MsG0180003030.01.T01 MTR_7g033230 30.404 421 216 14 126 487 213 615 6.49e-40 152
MsG0180003030.01.T01 MTR_7g033230 30.404 421 216 14 126 487 283 685 1.10e-39 152
MsG0180003030.01.T01 MTR_8g104970 31.180 356 175 11 178 476 119 461 2.33e-39 149
MsG0180003030.01.T01 MTR_6g016880 28.108 370 186 9 175 484 74 423 1.30e-38 146
MsG0180003030.01.T01 MTR_8g027900 29.235 366 186 11 174 481 206 556 3.77e-38 147
MsG0180003030.01.T01 MTR_7g070060 39.227 181 99 4 178 354 63 236 4.89e-38 141
MsG0180003030.01.T01 MTR_5g035090 31.025 361 181 14 178 483 82 429 9.73e-38 144
MsG0180003030.01.T01 MTR_3g109840 32.044 362 172 16 179 483 73 417 4.12e-37 142
MsG0180003030.01.T01 MTR_5g035070 29.730 370 191 10 179 492 87 443 4.23e-36 139
MsG0180003030.01.T01 MTR_6g016875 30.791 354 176 13 179 476 64 404 1.13e-35 137
MsG0180003030.01.T01 MTR_2g016060 27.473 364 187 13 180 482 56 403 3.14e-35 136
MsG0180003030.01.T01 MTR_7g068920 37.430 179 103 4 178 354 79 250 3.91e-35 136
MsG0180003030.01.T01 MTR_7g068920 44.000 100 50 3 386 480 323 421 4.14e-13 71.6
MsG0180003030.01.T01 MTR_6g007777 28.962 366 188 11 179 488 116 465 2.52e-34 135
MsG0180003030.01.T01 MTR_4g125060 26.836 354 193 10 179 480 171 510 4.65e-34 134
MsG0180003030.01.T01 MTR_4g125060 27.119 354 192 11 179 480 200 539 1.64e-33 133
MsG0180003030.01.T01 MTR_4g125060 27.119 354 192 11 179 480 132 471 2.83e-33 132
MsG0180003030.01.T01 MTR_8g093870 25.581 387 206 13 150 480 112 472 2.11e-30 124
MsG0180003030.01.T01 MTR_6g016240 28.338 367 177 16 179 480 71 416 9.38e-30 121
MsG0180003030.01.T01 MTR_4g092830 27.978 361 177 16 179 476 48 388 1.83e-29 120
MsG0180003030.01.T01 MTR_2g022580 46.032 126 65 2 239 362 2 126 2.62e-28 109
MsG0180003030.01.T01 MTR_5g069320 28.966 290 115 11 225 473 147 386 1.82e-26 111
MsG0180003030.01.T01 MTR_7g019140 41.525 118 64 1 155 267 50 167 5.61e-26 104
MsG0180003030.01.T01 MTR_5g035120 44.681 94 52 0 179 272 75 168 9.60e-22 92.8
MsG0180003030.01.T01 MTR_0929s0010 40.506 79 42 1 155 228 50 128 1.33e-11 62.4
MsG0180003030.01.T01 MTR_5g035140 26.459 257 128 9 284 484 17 268 2.25e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003030.01.T01 AT5G06700 52.768 578 170 11 12 486 23 600 0.0 545
MsG0180003030.01.T01 AT3G12060 50.940 532 209 7 11 494 22 549 0.0 522
MsG0180003030.01.T01 AT1G60790 47.368 399 158 7 130 481 140 533 5.50e-122 368
MsG0180003030.01.T01 AT5G49340 46.705 349 146 4 174 482 95 443 1.49e-111 338
MsG0180003030.01.T01 AT5G20590 41.292 356 168 3 169 485 131 484 4.24e-98 304
MsG0180003030.01.T01 AT3G62390 40.769 390 170 9 137 484 105 475 1.23e-94 295
MsG0180003030.01.T01 AT3G06080 40.223 358 164 7 172 484 96 448 4.72e-81 259
MsG0180003030.01.T01 AT5G19160 38.005 371 175 7 172 493 92 456 7.92e-78 251
MsG0180003030.01.T01 AT5G06230 36.415 357 173 7 178 486 20 370 1.38e-67 222
MsG0180003030.01.T01 AT2G30010 34.831 356 165 11 179 481 56 397 2.23e-67 222
MsG0180003030.01.T01 AT2G30010 34.831 356 165 11 179 481 99 440 3.29e-67 223
MsG0180003030.01.T01 AT5G06230 36.415 357 173 7 178 486 61 411 3.44e-67 222
MsG0180003030.01.T01 AT5G01620 33.807 352 181 9 171 477 102 446 1.59e-66 221
MsG0180003030.01.T01 AT5G01620 33.807 352 181 9 171 477 102 446 1.59e-66 221
MsG0180003030.01.T01 AT5G01620 33.807 352 181 9 171 477 110 454 2.02e-66 221
MsG0180003030.01.T01 AT1G73140 33.152 368 190 10 159 481 50 406 1.32e-65 218
MsG0180003030.01.T01 AT1G48880 35.311 354 162 8 178 486 114 445 3.29e-65 218
MsG0180003030.01.T01 AT3G11570 36.228 334 165 7 195 486 98 425 1.23e-64 216
MsG0180003030.01.T01 AT1G29050 31.522 368 188 7 154 482 38 380 1.86e-64 214
MsG0180003030.01.T01 AT5G58600 34.097 349 171 11 179 481 66 401 3.03e-64 214
MsG0180003030.01.T01 AT1G78710 38.562 306 148 10 178 481 30 297 8.34e-64 209
MsG0180003030.01.T01 AT2G34070 31.200 375 187 8 156 482 34 385 3.05e-63 211
MsG0180003030.01.T01 AT3G54260 35.799 338 169 9 179 481 51 375 1.62e-62 209
MsG0180003030.01.T01 AT2G40320 34.286 350 176 9 179 481 81 423 1.85e-60 204
MsG0180003030.01.T01 AT3G62390 42.857 231 114 3 137 363 105 321 4.55e-60 203
MsG0180003030.01.T01 AT2G42570 32.222 360 182 9 161 481 29 365 7.72e-60 201
MsG0180003030.01.T01 AT2G40160 31.250 384 205 8 155 486 53 429 2.39e-59 202
MsG0180003030.01.T01 AT5G20590 46.154 195 104 1 169 362 131 325 3.57e-59 200
MsG0180003030.01.T01 AT2G40160 30.971 381 204 8 155 483 53 426 1.12e-58 200
MsG0180003030.01.T01 AT5G01360 31.054 351 187 8 178 480 35 378 2.45e-58 197
MsG0180003030.01.T01 AT1G78710 35.465 344 159 12 178 481 37 357 3.11e-58 197
MsG0180003030.01.T01 AT5G01360 31.054 351 187 8 178 480 91 434 1.87e-57 197
MsG0180003030.01.T01 AT2G30900 33.043 345 168 9 179 481 43 366 2.01e-57 195
MsG0180003030.01.T01 AT3G11030 32.486 354 178 11 179 481 106 449 5.10e-57 196
MsG0180003030.01.T01 AT2G31110 32.164 342 170 8 178 480 44 362 5.34e-57 194
MsG0180003030.01.T01 AT2G38320 31.139 395 200 12 136 481 34 405 1.17e-56 194
MsG0180003030.01.T01 AT5G19160 47.917 192 99 1 172 362 92 283 2.16e-56 192
MsG0180003030.01.T01 AT3G14850 33.430 344 168 10 174 477 29 351 2.50e-55 189
MsG0180003030.01.T01 AT3G55990 28.017 464 257 11 74 483 46 486 1.93e-54 190
MsG0180003030.01.T01 AT3G06080 46.597 191 101 1 172 361 96 286 4.66e-54 185
MsG0180003030.01.T01 AT2G40150 29.235 366 189 10 178 484 70 424 2.54e-53 186
MsG0180003030.01.T01 AT2G38320 31.498 327 171 10 203 481 1 322 8.94e-47 166
MsG0180003030.01.T01 AT4G25360 26.585 410 225 10 136 483 131 526 2.03e-45 167
MsG0180003030.01.T01 AT4G25360 26.585 410 225 10 136 483 131 526 2.03e-45 167
MsG0180003030.01.T01 AT1G01430 28.505 428 228 12 118 488 49 455 3.30e-45 164
MsG0180003030.01.T01 AT4G11090 32.527 372 172 14 167 476 67 421 3.75e-44 161
MsG0180003030.01.T01 AT5G58600 37.838 185 102 3 179 362 66 238 2.54e-43 155
MsG0180003030.01.T01 AT5G51640 28.021 389 200 12 164 488 123 495 4.04e-43 160
MsG0180003030.01.T01 AT1G70230 31.988 347 177 12 179 480 79 411 1.36e-42 156
MsG0180003030.01.T01 AT2G30900 38.547 179 97 4 179 356 43 209 1.26e-38 142
MsG0180003030.01.T01 AT2G40160 34.286 210 128 3 155 361 53 255 1.67e-38 143
MsG0180003030.01.T01 AT3G28150 29.526 359 176 11 178 478 69 408 1.71e-38 145
MsG0180003030.01.T01 AT4G01080 28.650 363 185 8 178 484 90 434 5.75e-38 144
MsG0180003030.01.T01 AT4G23790 29.894 378 186 13 167 481 67 428 1.34e-37 143
MsG0180003030.01.T01 AT2G31110 36.872 179 100 3 178 356 44 209 1.45e-37 139
MsG0180003030.01.T01 AT5G06230 38.095 189 110 2 178 359 61 249 7.72e-37 138
MsG0180003030.01.T01 AT3G02440 30.252 357 171 12 179 476 127 464 1.87e-36 141
MsG0180003030.01.T01 AT3G02440 30.252 357 171 12 179 476 135 472 2.14e-36 141
MsG0180003030.01.T01 AT5G15890 25.328 533 303 18 18 476 7 518 2.54e-36 141
MsG0180003030.01.T01 AT5G64470 29.132 357 184 16 179 482 55 395 3.41e-36 139
MsG0180003030.01.T01 AT2G34070 29.197 274 131 7 249 482 1 251 1.77e-35 133
MsG0180003030.01.T01 AT5G64470 28.649 370 187 18 173 482 49 401 2.20e-35 136
MsG0180003030.01.T01 AT5G15900 28.165 387 193 13 157 480 45 409 4.95e-35 136
MsG0180003030.01.T01 AT5G15900 28.165 387 193 13 157 480 64 428 5.62e-35 136
MsG0180003030.01.T01 AT5G20680 26.571 350 195 10 179 478 118 455 2.80e-33 132
MsG0180003030.01.T01 AT5G20680 26.286 350 196 9 179 478 212 549 5.56e-33 132
MsG0180003030.01.T01 AT5G20680 26.286 350 196 9 179 478 212 549 5.56e-33 132
MsG0180003030.01.T01 AT5G20680 26.286 350 196 9 179 478 212 549 5.56e-33 132
MsG0180003030.01.T01 AT5G20680 26.286 350 196 9 179 478 212 549 5.56e-33 132
MsG0180003030.01.T01 AT5G20680 26.286 350 196 9 179 478 194 531 7.13e-33 131
MsG0180003030.01.T01 AT2G14530 28.571 364 179 15 179 480 62 406 9.45e-32 126
MsG0180003030.01.T01 AT5G64020 25.698 358 204 12 179 480 57 408 1.60e-31 125
MsG0180003030.01.T01 AT2G37720 25.485 361 220 10 163 480 128 482 1.79e-28 118
MsG0180003030.01.T01 AT3G14850 28.625 269 131 9 249 477 1 248 3.62e-26 107
MsG0180003030.01.T01 AT2G31110 28.700 223 104 7 297 480 8 214 7.42e-22 94.4
MsG0180003030.01.T01 AT5G64470 31.343 201 116 10 173 361 49 239 2.18e-20 92.4
MsG0180003030.01.T01 AT5G64470 31.343 201 116 10 173 361 49 239 2.38e-20 92.4

Find 82 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTGATAATCTTTATC+AGG 0.249165 1:+55269431 None:intergenic
GTTTCAGCCATTGAAGTTAA+AGG 0.262854 1:+55270085 None:intergenic
CCCTCCTAAGATGAGAGTTT+TGG 0.293601 1:-55267453 MsG0180003030.01.T01:CDS
ATTTCCTTTCGTCTGGTGAT+AGG 0.317687 1:+55267327 None:intergenic
CTCTTATTCATTCATATTCA+AGG 0.319341 1:-55268789 MsG0180003030.01.T01:intron
CTTGGAAGGCTACACCCTTT+TGG 0.341586 1:+55269398 None:intergenic
TGCAGCCATTGGTGCCTCCC+TGG 0.347447 1:-55267284 MsG0180003030.01.T01:CDS
CTTCTAATGCTTCTTCTCCT+TGG 0.351299 1:-55269931 MsG0180003030.01.T01:CDS
TGTATCGCCGTTCTTAGTTC+AGG 0.358097 1:-55268629 MsG0180003030.01.T01:CDS
GTTGAAACAACATCTTTAGA+TGG 0.366150 1:+55269671 None:intergenic
AGTGGCGGGCAATGGAATTC+AGG 0.377897 1:-55267533 MsG0180003030.01.T01:CDS
GGAAACACTTCGGCTCGATT+TGG 0.379965 1:-55268572 MsG0180003030.01.T01:CDS
TTGTTGGTGATTCAATCAAT+AGG 0.381153 1:-55268910 MsG0180003030.01.T01:CDS
AGTATCTCATTCCATGTATC+AGG 0.384571 1:+55267257 None:intergenic
GGCACCAATGGCTGCAGTCC+TGG 0.386507 1:+55267291 None:intergenic
ACACAACCCTTTAACTTCAA+TGG 0.398843 1:-55270092 MsG0180003030.01.T01:exon
TTGGTAGGATTACAACTTCT+CGG 0.404382 1:-55268662 MsG0180003030.01.T01:intron
CTTGAATATGAATGAATAAG+AGG 0.404921 1:+55268790 None:intergenic
TTTCAGCCATTGAAGTTAAA+GGG 0.411445 1:+55270086 None:intergenic
CAGAAACATGAGAAGAGGTT+TGG 0.417007 1:+55269642 None:intergenic
TCTTCTCATGTTTCTGATCA+AGG 0.418805 1:-55269635 MsG0180003030.01.T01:CDS
GTTTAAGTGTGTAACATGTT+TGG 0.439514 1:+55270060 None:intergenic
TCCCTGGTGTTCCTGATACA+TGG 0.446443 1:-55267268 MsG0180003030.01.T01:CDS
CTCATGATAAAACTTCTAAA+GGG 0.448781 1:-55268483 MsG0180003030.01.T01:intron
ACTCATGATAAAACTTCTAA+AGG 0.457588 1:-55268484 MsG0180003030.01.T01:CDS
TCAATCAAATTGCATGAGCC+AGG 0.458796 1:+55269485 None:intergenic
GAAAGATGAGATTCAAATGA+TGG 0.467173 1:-55269576 MsG0180003030.01.T01:CDS
ACTAAAAGTGTTGCTAAAAG+TGG 0.469742 1:+55269796 None:intergenic
AATGGCGATTTCCTTTCGTC+TGG 0.470473 1:+55267320 None:intergenic
ATTCAATCAATAGGAATATG+TGG 0.472787 1:-55268901 MsG0180003030.01.T01:CDS
AGATTTAGAAGAATCAAAAG+TGG 0.480735 1:+55269880 None:intergenic
TCCAAAACTCTCATCTTAGG+AGG 0.488636 1:+55267452 None:intergenic
TGGGAAATGCTTGTCAAGAA+TGG 0.491910 1:-55268604 MsG0180003030.01.T01:CDS
AAATTGAAGTGGAAACCAAA+AGG 0.499526 1:-55269413 MsG0180003030.01.T01:CDS
GGAAGATGAAGAAGAAGAAG+TGG 0.500066 1:+55269817 None:intergenic
ACGGTCATCCCTCTATCTAT+AGG 0.500871 1:-55267358 MsG0180003030.01.T01:CDS
ATGAGAAGAGGTTTGGTTGG+TGG 0.507892 1:+55269649 None:intergenic
GGAGAAGAAGCATTAGAAGA+AGG 0.511691 1:+55269935 None:intergenic
CAAAATTCTCTAACCTTGGA+AGG 0.511952 1:+55269384 None:intergenic
TATCTTTCACAGAGTTTCTG+AGG 0.523448 1:+55268861 None:intergenic
AATTGAAGTGGAAACCAAAA+GGG 0.527916 1:-55269412 MsG0180003030.01.T01:CDS
GATATAATCATCTTCAACAC+TGG 0.528676 1:-55268517 MsG0180003030.01.T01:CDS
CGCCGTTCTTAGTTCAGGAG+TGG 0.532784 1:-55268624 MsG0180003030.01.T01:CDS
TTCCATGTATCAGGAACACC+AGG 0.535655 1:+55267266 None:intergenic
CAAACTGTAGTGGCGGGCAA+TGG 0.539070 1:-55267541 MsG0180003030.01.T01:CDS
ACTTTCAAACCAACCCATGT+TGG 0.539786 1:-55269719 MsG0180003030.01.T01:CDS
CTGCAGTCCTGGTACATCAA+TGG 0.539831 1:+55267302 None:intergenic
CTAATTGTATCAAACTGTAG+TGG 0.543401 1:-55267551 MsG0180003030.01.T01:CDS
TGTCAAGAATGGAACAAAGA+AGG 0.544391 1:-55268593 MsG0180003030.01.T01:CDS
GAACACCAGGGAGGCACCAA+TGG 0.544438 1:+55267279 None:intergenic
GTTGGACGGACTAAGAATGT+TGG 0.546773 1:-55268960 MsG0180003030.01.T01:CDS
CCAAAACTCTCATCTTAGGA+GGG 0.548310 1:+55267453 None:intergenic
AACATGAGAAGAGGTTTGGT+TGG 0.552738 1:+55269646 None:intergenic
AAGATTATCAGAAATTGAAG+TGG 0.552920 1:-55269424 MsG0180003030.01.T01:CDS
TCATCTTCAACACTGGCCAC+TGG 0.556878 1:-55268510 MsG0180003030.01.T01:CDS
TCAAGGTAAACATCAGAAGA+AGG 0.558246 1:-55269618 MsG0180003030.01.T01:CDS
CAAAAGGGTGTAGCCTTCCA+AGG 0.558932 1:-55269397 MsG0180003030.01.T01:intron
TTGTATCAAACTGTAGTGGC+GGG 0.562250 1:-55267547 MsG0180003030.01.T01:CDS
AGAATGTTGGATTTGTTGAG+AGG 0.566032 1:-55268947 MsG0180003030.01.T01:CDS
TCTTCAACACTGGCCACTGG+TGG 0.568508 1:-55268507 MsG0180003030.01.T01:CDS
TCAGTTGTATAAACAATGGA+AGG 0.570566 1:-55269454 MsG0180003030.01.T01:CDS
GCCGTTCTTAGTTCAGGAGT+GGG 0.572840 1:-55268623 MsG0180003030.01.T01:CDS
TTGATCAGAAACATGAGAAG+AGG 0.575776 1:+55269637 None:intergenic
TCTTATCCTCTCTATAAACC+TGG 0.580966 1:-55269503 MsG0180003030.01.T01:CDS
AAGAAGAAGTGGTTGTGTTG+TGG 0.581560 1:+55269828 None:intergenic
ATGACAGATTTCCGAAAAGA+CGG 0.583960 1:-55267377 MsG0180003030.01.T01:CDS
CATGAGCCAGGTTTATAGAG+AGG 0.584255 1:+55269497 None:intergenic
TCCCACTCCTGAACTAAGAA+CGG 0.589060 1:+55268622 None:intergenic
ACACTTCGGCTCGATTTGGT+TGG 0.593759 1:-55268568 MsG0180003030.01.T01:CDS
TTCAATCAATAGGAATATGT+GGG 0.595339 1:-55268900 MsG0180003030.01.T01:CDS
ATTGTATCAAACTGTAGTGG+CGG 0.602123 1:-55267548 MsG0180003030.01.T01:CDS
GTGAATATGTTAGTAAACCA+AGG 0.610005 1:+55269914 None:intergenic
TCCATGGCTAATAGGTTGGA+CGG 0.613362 1:-55268974 MsG0180003030.01.T01:intron
AAAACCTATCACCAGACGAA+AGG 0.617041 1:-55267331 MsG0180003030.01.T01:CDS
GGCGGGCAATGGAATTCAGG+TGG 0.621085 1:-55267530 MsG0180003030.01.T01:CDS
CAATTCAGTTGTATAAACAA+TGG 0.624015 1:-55269458 MsG0180003030.01.T01:CDS
TGTACCAGGACTGCAGCCAT+TGG 0.626268 1:-55267295 MsG0180003030.01.T01:CDS
GAAATCGCCATTGATGTACC+AGG 0.645824 1:-55267309 MsG0180003030.01.T01:CDS
GAACAAAGAAGGAAACACTT+CGG 0.668443 1:-55268582 MsG0180003030.01.T01:CDS
TCCATGTATCAGGAACACCA+GGG 0.763463 1:+55267267 None:intergenic
ATGTATCAGGAACACCAGGG+AGG 0.772412 1:+55267270 None:intergenic
ATGGAATGAGATACTCTACG+CGG 0.828676 1:-55267249 MsG0180003030.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAAAAATATGTTAATAAG+TGG + Chr1:55268225-55268244 None:intergenic 15.0%
!! TTTAATATCGAATCAATATA+TGG + Chr1:55269469-55269488 None:intergenic 15.0%
!! AAAAATATGTTAATAAGTGG+TGG + Chr1:55268222-55268241 None:intergenic 20.0%
!! AATTTCTGATAATCTTTATC+AGG + Chr1:55267911-55267930 None:intergenic 20.0%
!! CTAATACTATCTTAGAATTT+AGG - Chr1:55268147-55268166 MsG0180003030.01.T01:intron 20.0%
!! CTTATTAACATATTATGCTA+TGG - Chr1:55269734-55269753 MsG0180003030.01.T01:CDS 20.0%
!! TCAAAATAAGGTTGAAAATA+AGG + Chr1:55268935-55268954 None:intergenic 20.0%
!!! AAGTAGAGATTTATTTTATC+CGG + Chr1:55269543-55269562 None:intergenic 20.0%
!!! AATTTTGATGTTGTTCAAAT+TGG - Chr1:55268287-55268306 MsG0180003030.01.T01:intron 20.0%
!!! AGTTTCAGTGTTATTTTTTA+GGG - Chr1:55269391-55269410 MsG0180003030.01.T01:intron 20.0%
!!! ATGTTTTTAGGAACTTAATT+TGG - Chr1:55268317-55268336 MsG0180003030.01.T01:intron 20.0%
!!! GTATAATGAATTGAATGTTT+TGG - Chr1:55269199-55269218 MsG0180003030.01.T01:intron 20.0%
! AAGATTATCAGAAATTGAAG+TGG - Chr1:55267915-55267934 MsG0180003030.01.T01:intron 25.0%
! ACTCATGATAAAACTTCTAA+AGG - Chr1:55268855-55268874 MsG0180003030.01.T01:CDS 25.0%
! AGATTTAGAAGAATCAAAAG+TGG + Chr1:55267462-55267481 None:intergenic 25.0%
! ATTCAATCAATAGGAATATG+TGG - Chr1:55268438-55268457 MsG0180003030.01.T01:intron 25.0%
! CAATTCAGTTGTATAAACAA+TGG - Chr1:55267881-55267900 MsG0180003030.01.T01:intron 25.0%
! CTCATGATAAAACTTCTAAA+GGG - Chr1:55268856-55268875 MsG0180003030.01.T01:CDS 25.0%
! CTCTTATTCATTCATATTCA+AGG - Chr1:55268550-55268569 MsG0180003030.01.T01:CDS 25.0%
! CTTGAATATGAATGAATAAG+AGG + Chr1:55268552-55268571 None:intergenic 25.0%
! GTGGGAATAAAATCAAAATA+AGG + Chr1:55268947-55268966 None:intergenic 25.0%
! TTCAATCAATAGGAATATGT+GGG - Chr1:55268439-55268458 MsG0180003030.01.T01:intron 25.0%
!! AAGTATTTTTCGTTCTTGAT+TGG + Chr1:55269857-55269876 None:intergenic 25.0%
!! AATGGAAGAGTTCATTTTAA+AGG - Chr1:55268521-55268540 MsG0180003030.01.T01:CDS 25.0%
!! GCAAAATTGGACATATTTTT+GGG - Chr1:55268046-55268065 MsG0180003030.01.T01:intron 25.0%
!! TGCAAAATTGGACATATTTT+TGG - Chr1:55268045-55268064 MsG0180003030.01.T01:intron 25.0%
!! TGTGACTGTTGTATTTATTT+TGG - Chr1:55269346-55269365 MsG0180003030.01.T01:intron 25.0%
!!! AGTAAAGTTTTTGAAGCAAA+TGG - Chr1:55268503-55268522 MsG0180003030.01.T01:CDS 25.0%
!!! ATGAAGTGTGATTTTTTTGA+TGG - Chr1:55267794-55267813 MsG0180003030.01.T01:intron 25.0%
!!! ATTGGTTTGTGAATGTTTTT+AGG - Chr1:55268305-55268324 MsG0180003030.01.T01:intron 25.0%
!!! CAGTTTCAGTGTTATTTTTT+AGG - Chr1:55269390-55269409 MsG0180003030.01.T01:intron 25.0%
!!! TAATCTCAACAACTTTTTTC+AGG - Chr1:55269147-55269166 MsG0180003030.01.T01:intron 25.0%
!!! TAATGAATTGAATGTTTTGG+AGG - Chr1:55269202-55269221 MsG0180003030.01.T01:intron 25.0%
!!! TGAAGTGTGATTTTTTTGAT+GGG - Chr1:55267795-55267814 MsG0180003030.01.T01:intron 25.0%
AAATTGAAGTGGAAACCAAA+AGG - Chr1:55267926-55267945 MsG0180003030.01.T01:intron 30.0%
AATTGAAGTGGAAACCAAAA+GGG - Chr1:55267927-55267946 MsG0180003030.01.T01:intron 30.0%
AGAAATTGCACAAAGCAAAA+TGG + Chr1:55268623-55268642 None:intergenic 30.0%
AGACTTGGATGTATTTATGT+TGG + Chr1:55269270-55269289 None:intergenic 30.0%
AGCTGAGAAAAAAGATTAGT+TGG + Chr1:55269579-55269598 None:intergenic 30.0%
CATAAATACATCCAAGTCTA+TGG - Chr1:55269271-55269290 MsG0180003030.01.T01:intron 30.0%
CTAATTGTATCAAACTGTAG+TGG - Chr1:55269788-55269807 MsG0180003030.01.T01:CDS 30.0%
GAAAGATGAGATTCAAATGA+TGG - Chr1:55267763-55267782 MsG0180003030.01.T01:intron 30.0%
GATATAATCATCTTCAACAC+TGG - Chr1:55268822-55268841 MsG0180003030.01.T01:CDS 30.0%
GTGAATATGTTAGTAAACCA+AGG + Chr1:55267428-55267447 None:intergenic 30.0%
GTTGAAACAACATCTTTAGA+TGG + Chr1:55267671-55267690 None:intergenic 30.0%
GTTTAAGTGTGTAACATGTT+TGG + Chr1:55267282-55267301 None:intergenic 30.0%
TAAGTCATAAACATTCGAGA+TGG + Chr1:55269699-55269718 None:intergenic 30.0%
TCAAGAACGAAAAATACTTG+AGG - Chr1:55269858-55269877 MsG0180003030.01.T01:CDS 30.0%
TCAGTTGTATAAACAATGGA+AGG - Chr1:55267885-55267904 MsG0180003030.01.T01:intron 30.0%
TCATCAAAATTCTCTAACCT+TGG + Chr1:55267962-55267981 None:intergenic 30.0%
TGATATTTGTATTCTGTCCA+TGG - Chr1:55268349-55268368 MsG0180003030.01.T01:intron 30.0%
TTGAACTCAATCAGTCTATT+TGG - Chr1:55269489-55269508 MsG0180003030.01.T01:CDS 30.0%
TTTCAGCCATTGAAGTTAAA+GGG + Chr1:55267256-55267275 None:intergenic 30.0%
! AGTAAAAGCGATAGTTTTTC+TGG + Chr1:55267333-55267352 None:intergenic 30.0%
! AGTGACACAAGATTTTAGAT+AGG - Chr1:55268122-55268141 MsG0180003030.01.T01:intron 30.0%
! ATCAAAAGTGGAAGTTTTTG+TGG + Chr1:55267450-55267469 None:intergenic 30.0%
! TTTTCCAAAACTCTCATCTT+AGG + Chr1:55269893-55269912 None:intergenic 30.0%
! TTTTGCTTCCTATAGATAGA+GGG + Chr1:55269992-55270011 None:intergenic 30.0%
!! ACTAAAAGTGTTGCTAAAAG+TGG + Chr1:55267546-55267565 None:intergenic 30.0%
!! TGAATATTGATTCCCTTGTT+TGG - Chr1:55268658-55268677 MsG0180003030.01.T01:CDS 30.0%
!! TTAGTGTTGTTTCCATGATT+CGG - Chr1:55268573-55268592 MsG0180003030.01.T01:CDS 30.0%
!! TTGTTGGTGATTCAATCAAT+AGG - Chr1:55268429-55268448 MsG0180003030.01.T01:intron 30.0%
!!! GTGATTTTTTTGATGGGAAA+TGG - Chr1:55267801-55267820 MsG0180003030.01.T01:intron 30.0%
!!! TAAGATGAGAGTTTTGGAAA+AGG - Chr1:55269892-55269911 MsG0180003030.01.T01:CDS 30.0%
!!! TTGAGTTTTGTTTCCAACAT+GGG + Chr1:55267636-55267655 None:intergenic 30.0%
!!! TTTGAGTTTTGTTTCCAACA+TGG + Chr1:55267637-55267656 None:intergenic 30.0%
!!! TTTTGATGGGAAATGGATTA+AGG - Chr1:55267808-55267827 MsG0180003030.01.T01:intron 30.0%
ACATGAATCCCGAATCATTA+TGG - Chr1:55269512-55269531 MsG0180003030.01.T01:CDS 35.0%
AGTATCTCATTCCATGTATC+AGG + Chr1:55270085-55270104 None:intergenic 35.0%
AGTTGTAATCCTACCAAACA+AGG + Chr1:55268674-55268693 None:intergenic 35.0%
ATAGACTCAAGAGAGTAATG+CGG + Chr1:55269079-55269098 None:intergenic 35.0%
ATGACAGATTTCCGAAAAGA+CGG - Chr1:55269962-55269981 MsG0180003030.01.T01:CDS 35.0%
ATTGTATCAAACTGTAGTGG+CGG - Chr1:55269791-55269810 MsG0180003030.01.T01:CDS 35.0%
CAAAATTCTCTAACCTTGGA+AGG + Chr1:55267958-55267977 None:intergenic 35.0%
CAGATTACTTGTCGTAATCA+TGG - Chr1:55269416-55269435 MsG0180003030.01.T01:CDS 35.0%
CTTTAATGCAGTCACTTCTA+TGG + Chr1:55268912-55268931 None:intergenic 35.0%
GAACAAAGAAGGAAACACTT+CGG - Chr1:55268757-55268776 MsG0180003030.01.T01:intron 35.0%
GTTGAGATTAACAGTTAACG+AGG + Chr1:55269137-55269156 None:intergenic 35.0%
GTTGTAATCCTACCAAACAA+GGG + Chr1:55268673-55268692 None:intergenic 35.0%
GTTTCAGCCATTGAAGTTAA+AGG + Chr1:55267257-55267276 None:intergenic 35.0%
TAACTCAATCGCTGCAAAAT+TGG - Chr1:55268033-55268052 MsG0180003030.01.T01:intron 35.0%
TATACACATGACTACCTTCT+TGG + Chr1:55269184-55269203 None:intergenic 35.0%
TATCTTTCACAGAGTTTCTG+AGG + Chr1:55268481-55268500 None:intergenic 35.0%
TCAAGGTAAACATCAGAAGA+AGG - Chr1:55267721-55267740 MsG0180003030.01.T01:intron 35.0%
TCTTATCCTCTCTATAAACC+TGG - Chr1:55267836-55267855 MsG0180003030.01.T01:intron 35.0%
TGTCAAGAATGGAACAAAGA+AGG - Chr1:55268746-55268765 MsG0180003030.01.T01:intron 35.0%
TTATAATGCAGACCGAATCA+TGG + Chr1:55268588-55268607 None:intergenic 35.0%
TTCAGTCAGGGTTTAAACTT+AGG - Chr1:55269024-55269043 MsG0180003030.01.T01:intron 35.0%
TTGATCAGAAACATGAGAAG+AGG + Chr1:55267705-55267724 None:intergenic 35.0%
TTGGTAGGATTACAACTTCT+CGG - Chr1:55268677-55268696 MsG0180003030.01.T01:intron 35.0%
! AATTTTGCAGCGATTGAGTT+AGG + Chr1:55268034-55268053 None:intergenic 35.0%
! ACACAACCCTTTAACTTCAA+TGG - Chr1:55267247-55267266 MsG0180003030.01.T01:CDS 35.0%
! ACCAATAGTTGTTTCAGTCA+GGG - Chr1:55269012-55269031 MsG0180003030.01.T01:intron 35.0%
! CATTTTCGTGACATTCAAGT+AGG + Chr1:55269945-55269964 None:intergenic 35.0%
! GCTATTCTTCTTCGCATTTT+AGG - Chr1:55269306-55269325 MsG0180003030.01.T01:intron 35.0%
! GTTTTGCTTCCTATAGATAG+AGG + Chr1:55269993-55270012 None:intergenic 35.0%
! TCTTCTCATGTTTCTGATCA+AGG - Chr1:55267704-55267723 MsG0180003030.01.T01:intron 35.0%
!! AGAATGTTGGATTTGTTGAG+AGG - Chr1:55268392-55268411 MsG0180003030.01.T01:intron 35.0%
!! TATTGATTCCCTTGTTTGGT+AGG - Chr1:55268662-55268681 MsG0180003030.01.T01:intron 35.0%
!! TTGGTGTTGCATTACTTTGA+GGG - Chr1:55269365-55269384 MsG0180003030.01.T01:intron 35.0%
!! TTTGGTGTTGCATTACTTTG+AGG - Chr1:55269364-55269383 MsG0180003030.01.T01:intron 35.0%
!!! ACATATTTTTGGGACTCGTA+AGG - Chr1:55268056-55268075 MsG0180003030.01.T01:intron 35.0%
!!! ATATTTTTGGGACTCGTAAG+GGG - Chr1:55268058-55268077 MsG0180003030.01.T01:intron 35.0%
!!! CATATTTTTGGGACTCGTAA+GGG - Chr1:55268057-55268076 MsG0180003030.01.T01:intron 35.0%
!!! CTCAACAACTTTTTTCAGGA+AGG - Chr1:55269151-55269170 MsG0180003030.01.T01:intron 35.0%
AAAACCTATCACCAGACGAA+AGG - Chr1:55270008-55270027 MsG0180003030.01.T01:CDS 40.0%
AAGAAGAAGTGGTTGTGTTG+TGG + Chr1:55267514-55267533 None:intergenic 40.0%
AAGTCTATGGTCTTCTTCAG+AGG - Chr1:55269284-55269303 MsG0180003030.01.T01:intron 40.0%
AATATATGGCTCGCGTGTAT+CGG + Chr1:55269455-55269474 None:intergenic 40.0%
ACAATCCTCTCCTTACAAGT+CGG + Chr1:55268199-55268218 None:intergenic 40.0%
ACCCTGACTGAAACAACTAT+TGG + Chr1:55269016-55269035 None:intergenic 40.0%
ACTTTCAAACCAACCCATGT+TGG - Chr1:55267620-55267639 MsG0180003030.01.T01:intron 40.0%
AGAGTAATGCGGTTCAGTAA+AGG + Chr1:55269068-55269087 None:intergenic 40.0%
AGGAAGGACTATTACCAAGA+AGG - Chr1:55269167-55269186 MsG0180003030.01.T01:intron 40.0%
ATGGAATGAGATACTCTACG+CGG - Chr1:55270090-55270109 MsG0180003030.01.T01:exon 40.0%
ATTTCCTTTCGTCTGGTGAT+AGG + Chr1:55270015-55270034 None:intergenic 40.0%
CAGAAACATGAGAAGAGGTT+TGG + Chr1:55267700-55267719 None:intergenic 40.0%
CCAAAACTCTCATCTTAGGA+GGG + Chr1:55269889-55269908 None:intergenic 40.0%
CCGAATCATTATGGTGAATC+CGG - Chr1:55269521-55269540 MsG0180003030.01.T01:CDS 40.0%
CCGGATTCACCATAATGATT+CGG + Chr1:55269524-55269543 None:intergenic 40.0%
CGGATTCACCATAATGATTC+GGG + Chr1:55269523-55269542 None:intergenic 40.0%
CTTCTAATGCTTCTTCTCCT+TGG - Chr1:55267408-55267427 MsG0180003030.01.T01:CDS 40.0%
GACTGAAACAACTATTGGTC+AGG + Chr1:55269011-55269030 None:intergenic 40.0%
GGAAGATGAAGAAGAAGAAG+TGG + Chr1:55267525-55267544 None:intergenic 40.0%
GTATTCTGTCCATGGCTAAT+AGG - Chr1:55268357-55268376 MsG0180003030.01.T01:intron 40.0%
TCAATCAAATTGCATGAGCC+AGG + Chr1:55267857-55267876 None:intergenic 40.0%
TCAGTAAAGGTCCAATCGAT+GGG + Chr1:55269055-55269074 None:intergenic 40.0%
TCCAAAACTCTCATCTTAGG+AGG + Chr1:55269890-55269909 None:intergenic 40.0%
TCTGAAGAAGACCATAGACT+TGG + Chr1:55269285-55269304 None:intergenic 40.0%
TGAGAGTTTCGCATTAGGTA+CGG + Chr1:55268248-55268267 None:intergenic 40.0%
TGGGAAATGCTTGTCAAGAA+TGG - Chr1:55268735-55268754 MsG0180003030.01.T01:intron 40.0%
TTCAGTAAAGGTCCAATCGA+TGG + Chr1:55269056-55269075 None:intergenic 40.0%
TTGTATCAAACTGTAGTGGC+GGG - Chr1:55269792-55269811 MsG0180003030.01.T01:CDS 40.0%
TTTATTCCCACGAAATTCCC+TGG - Chr1:55268956-55268975 MsG0180003030.01.T01:CDS 40.0%
! AACATGAGAAGAGGTTTGGT+TGG + Chr1:55267696-55267715 None:intergenic 40.0%
! AGTGTTGAGAGTTTCGCATT+AGG + Chr1:55268253-55268272 None:intergenic 40.0%
! GACCAATAGTTGTTTCAGTC+AGG - Chr1:55269011-55269030 MsG0180003030.01.T01:intron 40.0%
! TTTTATCATGAGTCCACCAG+TGG + Chr1:55268848-55268867 None:intergenic 40.0%
!! GGAGAAGAAGCATTAGAAGA+AGG + Chr1:55267407-55267426 None:intergenic 40.0%
!!! GAGTTTTGGAAAAGGTACTG+AGG - Chr1:55269900-55269919 MsG0180003030.01.T01:CDS 40.0%
!!! GGCAAGAGACTTGTTTTTGT+TGG - Chr1:55268413-55268432 MsG0180003030.01.T01:intron 40.0%
!!! GTTTTGTTTCCAACATGGGT+TGG + Chr1:55267632-55267651 None:intergenic 40.0%
!!! TGTTTTGGAGGCATTTCGAA+AGG - Chr1:55269214-55269233 MsG0180003030.01.T01:intron 40.0%
AATGGCGATTTCCTTTCGTC+TGG + Chr1:55270022-55270041 None:intergenic 45.0%
ACGAAATTCCCTGGTAAAGG+GGG - Chr1:55268965-55268984 MsG0180003030.01.T01:intron 45.0%
ACGGTCATCCCTCTATCTAT+AGG - Chr1:55269981-55270000 MsG0180003030.01.T01:CDS 45.0%
CACGAAATTCCCTGGTAAAG+GGG - Chr1:55268964-55268983 MsG0180003030.01.T01:intron 45.0%
CAGTAAAGGTCCAATCGATG+GGG + Chr1:55269054-55269073 None:intergenic 45.0%
CATGAGCCAGGTTTATAGAG+AGG + Chr1:55267845-55267864 None:intergenic 45.0%
CCACGAAATTCCCTGGTAAA+GGG - Chr1:55268963-55268982 MsG0180003030.01.T01:CDS 45.0%
CCTTTACCAGGGAATTTCGT+GGG + Chr1:55268965-55268984 None:intergenic 45.0%
GAAATCGCCATTGATGTACC+AGG - Chr1:55270030-55270049 MsG0180003030.01.T01:CDS 45.0%
GTCACTACTATCAGACGACT+CGG + Chr1:55268108-55268127 None:intergenic 45.0%
TCACTACTATCAGACGACTC+GGG + Chr1:55268107-55268126 None:intergenic 45.0%
TCCATGTATCAGGAACACCA+GGG + Chr1:55270075-55270094 None:intergenic 45.0%
TCCCACTCCTGAACTAAGAA+CGG + Chr1:55268720-55268739 None:intergenic 45.0%
TCTGTCCATGGCTAATAGGT+TGG - Chr1:55268361-55268380 MsG0180003030.01.T01:intron 45.0%
TGTATCGCCGTTCTTAGTTC+AGG - Chr1:55268710-55268729 MsG0180003030.01.T01:intron 45.0%
TTCCATGTATCAGGAACACC+AGG + Chr1:55270076-55270095 None:intergenic 45.0%
TTCGAAAGGCTATAACGACC+TGG - Chr1:55269228-55269247 MsG0180003030.01.T01:intron 45.0%
! ATGAGAAGAGGTTTGGTTGG+TGG + Chr1:55267693-55267712 None:intergenic 45.0%
! CCCTCCTAAGATGAGAGTTT+TGG - Chr1:55269886-55269905 MsG0180003030.01.T01:CDS 45.0%
! TAGAGGGATGACCGTCTTTT+CGG + Chr1:55269976-55269995 None:intergenic 45.0%
! TCCATGGCTAATAGGTTGGA+CGG - Chr1:55268365-55268384 MsG0180003030.01.T01:intron 45.0%
!! GTTGGACGGACTAAGAATGT+TGG - Chr1:55268379-55268398 MsG0180003030.01.T01:intron 45.0%
!! TCCTACAACACCGACTTGTA+AGG - Chr1:55268186-55268205 MsG0180003030.01.T01:intron 45.0%
!! TCCTTACAAGTCGGTGTTGT+AGG + Chr1:55268190-55268209 None:intergenic 45.0%
ATGTATCAGGAACACCAGGG+AGG + Chr1:55270072-55270091 None:intergenic 50.0%
CCCACGAAATTCCCTGGTAA+AGG - Chr1:55268962-55268981 MsG0180003030.01.T01:CDS 50.0%
CCCTTTACCAGGGAATTTCG+TGG + Chr1:55268966-55268985 None:intergenic 50.0%
CTATAACGACCTGGAGCAGA+TGG - Chr1:55269237-55269256 MsG0180003030.01.T01:intron 50.0%
CTGCAGTCCTGGTACATCAA+TGG + Chr1:55270040-55270059 None:intergenic 50.0%
GCCGTTCTTAGTTCAGGAGT+GGG - Chr1:55268716-55268735 MsG0180003030.01.T01:intron 50.0%
TCATCTTCAACACTGGCCAC+TGG - Chr1:55268829-55268848 MsG0180003030.01.T01:CDS 50.0%
TCCCTGGTGTTCCTGATACA+TGG - Chr1:55270071-55270090 MsG0180003030.01.T01:CDS 50.0%
TCCGTCCAACCTATTAGCCA+TGG + Chr1:55268369-55268388 None:intergenic 50.0%
TCCTGTCAACTCGAGTCTCT+AGG - Chr1:55269111-55269130 MsG0180003030.01.T01:intron 50.0%
! CAAAAGGGTGTAGCCTTCCA+AGG - Chr1:55267942-55267961 MsG0180003030.01.T01:intron 50.0%
! CTTGGAAGGCTACACCCTTT+TGG + Chr1:55267944-55267963 None:intergenic 50.0%
! GGAAACACTTCGGCTCGATT+TGG - Chr1:55268767-55268786 MsG0180003030.01.T01:intron 50.0%
!! ACACTTCGGCTCGATTTGGT+TGG - Chr1:55268771-55268790 MsG0180003030.01.T01:intron 50.0%
!! CAACACCGACTTGTAAGGAG+AGG - Chr1:55268191-55268210 MsG0180003030.01.T01:intron 50.0%
!!! TTTTTGGGACTCGTAAGGGG+AGG - Chr1:55268061-55268080 MsG0180003030.01.T01:intron 50.0%
CGCCGTTCTTAGTTCAGGAG+TGG - Chr1:55268715-55268734 MsG0180003030.01.T01:intron 55.0%
CTTAGGCACTCCCCATCGAT+TGG - Chr1:55269041-55269060 MsG0180003030.01.T01:intron 55.0%
GGCATCAATCCATCTGCTCC+AGG + Chr1:55269249-55269268 None:intergenic 55.0%
TCTTCAACACTGGCCACTGG+TGG - Chr1:55268832-55268851 MsG0180003030.01.T01:CDS 55.0%
TGTACCAGGACTGCAGCCAT+TGG - Chr1:55270044-55270063 MsG0180003030.01.T01:CDS 55.0%
!! AGTGGCGGGCAATGGAATTC+AGG - Chr1:55269806-55269825 MsG0180003030.01.T01:CDS 55.0%
!! CAAACTGTAGTGGCGGGCAA+TGG - Chr1:55269798-55269817 MsG0180003030.01.T01:CDS 55.0%
!! GCCTAGAGACTCGAGTTGAC+AGG + Chr1:55269115-55269134 None:intergenic 55.0%
CGTACACGCCCCCTTTACCA+GGG + Chr1:55268976-55268995 None:intergenic 60.0%
GGCGGGCAATGGAATTCAGG+TGG - Chr1:55269809-55269828 MsG0180003030.01.T01:CDS 60.0%
TCGTACACGCCCCCTTTACC+AGG + Chr1:55268977-55268996 None:intergenic 60.0%
! TGGTAAAGGGGGCGTGTACG+AGG - Chr1:55268976-55268995 MsG0180003030.01.T01:intron 60.0%
!! GAACACCAGGGAGGCACCAA+TGG + Chr1:55270063-55270082 None:intergenic 60.0%
GGCACCAATGGCTGCAGTCC+TGG + Chr1:55270051-55270070 None:intergenic 65.0%
GGGACTCGTAAGGGGAGGAC+TGG - Chr1:55268066-55268085 MsG0180003030.01.T01:intron 65.0%
! TGCAGCCATTGGTGCCTCCC+TGG - Chr1:55270055-55270074 MsG0180003030.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 55267196 55270165 55267196 ID=MsG0180003030.01;Name=MsG0180003030.01
Chr1 mRNA 55267196 55270165 55267196 ID=MsG0180003030.01.T01;Parent=MsG0180003030.01;Name=MsG0180003030.01.T01;_AED=0.31;_eAED=0.32;_QI=70|0.66|0.75|1|0.66|0.75|4|0|495
Chr1 exon 55267196 55267598 55267196 ID=MsG0180003030.01.T01:exon:22425;Parent=MsG0180003030.01.T01
Chr1 exon 55268484 55268677 55268484 ID=MsG0180003030.01.T01:exon:22424;Parent=MsG0180003030.01.T01
Chr1 exon 55268790 55268982 55268790 ID=MsG0180003030.01.T01:exon:22423;Parent=MsG0180003030.01.T01
Chr1 exon 55269398 55270165 55269398 ID=MsG0180003030.01.T01:exon:22422;Parent=MsG0180003030.01.T01
Chr1 five_prime_UTR 55270096 55270165 55270096 ID=MsG0180003030.01.T01:five_prime_utr;Parent=MsG0180003030.01.T01
Chr1 CDS 55269398 55270095 55269398 ID=MsG0180003030.01.T01:cds;Parent=MsG0180003030.01.T01
Chr1 CDS 55268790 55268982 55268790 ID=MsG0180003030.01.T01:cds;Parent=MsG0180003030.01.T01
Chr1 CDS 55268484 55268677 55268484 ID=MsG0180003030.01.T01:cds;Parent=MsG0180003030.01.T01
Chr1 CDS 55267196 55267598 55267196 ID=MsG0180003030.01.T01:cds;Parent=MsG0180003030.01.T01
Gene Sequence

>MsG0180003030.01.T01

ATGGCTGAAACAACCAAACATGTTACACACTTAAACATCAAAAGCTTCTCTTCTATTCTCAAAACCAGAAAAACTATCGCTTTTACTTATGCTTTTATGCTTGCTTTTGTTTCTTTAACTGTTTTCTTAGCTTTTTCTCCTTCTTCTAATGCTTCTTCTCCTTGGTTTACTAACATATTCACCACAAAAACTTCCACTTTTGATTCTTCTAAATCTCATCTTTCTTCTATTTTCTCATTCTTTTTCCACAACACAACCACTTCTTCTTCTTCATCTTCCACTTTTAGCAACACTTTTAGTAACACTTCTAGATCTAATAGTAACACTTTTCAATCTTCTAACTCAAATACAACAACTTTCAAACCAACCCATGTTGGAAACAAAACTCAAAACTCTCTCAATCCATCTAAAGATGTTGTTTCAACCACCAACCAAACCTCTTCTCATGTTTCTGATCAAGGTAAACATCAGAAGAAGGAAAATCAAACTGCAAGTATGAAAGATGAGATTCAAATGATGGAGTCATTGATGAAGTGTGATTTTTTTGATGGGAAATGGATTAAGGATGAATCTTATCCTCTCTATAAACCTGGCTCATGCAATTTGATTGATGAACAATTCAGTTGTATAAACAATGGAAGGCCTGATAAAGATTATCAGAAATTGAAGTGGAAACCAAAAGGGTGTAGCCTTCCAAGGTTGGACGGACTAAGAATGTTGGATTTGTTGAGAGGCAAGAGACTTGTTTTTGTTGGTGATTCAATCAATAGGAATATGTGGGAATCTCTTATTTGCATCCTCAGAAACTCTGTGAAAGATAAAAGTAAAGTTTTTGAAGCAAATGGAAGAGTTCATTTTAAAGGAGAATCCTCTTATTCATTCATATTCAAGGATTACAACTTCTCGGTCGAGCTTTTTGTATCGCCGTTCTTAGTTCAGGAGTGGGAAATGCTTGTCAAGAATGGAACAAAGAAGGAAACACTTCGGCTCGATTTGGTTGGTAGATCGTCTAATCAATATAAAGATGCAGATATAATCATCTTCAACACTGGCCACTGGTGGACTCATGATAAAACTTCTAAAGGAATTCTGATACATATACATGTTTTTCTAATTGTATCAAACTGTAGTGGCGGGCAATGGAATTCAGGTGGACAATGTAACAGTGAAATCGTGCCAATCAAGAACGAAAAATACTTGAGGCAATACCCTCCTAAGATGAGAGTTTTGGAAAAGGTACTGAGGAACATGAAGACTCGTGTCACCTACTTGAATGTCACGAAAATGACAGATTTCCGAAAAGACGGTCATCCCTCTATCTATAGGAAGCAAAACCTATCACCAGACGAAAGGAAATCGCCATTGATGTACCAGGACTGCAGCCATTGGTGCCTCCCTGGTGTTCCTGATACATGGAATGAGATACTCTACGCGGAGCTTTTAATGAAACAATATCAATATCGAAATCAAAATCAGAATCAGCATTGA
Protein sequence

>MsG0180003030.01.T01

MAETTKHVTHLNIKSFSSILKTRKTIAFTYAFMLAFVSLTVFLAFSPSSNASSPWFTNIFTTKTSTFDSSKSHLSSIFSFFFHNTTTSSSSSSTFSNTFSNTSRSNSNTFQSSNSNTTTFKPTHVGNKTQNSLNPSKDVVSTTNQTSSHVSDQGKHQKKENQTASMKDEIQMMESLMKCDFFDGKWIKDESYPLYKPGSCNLIDEQFSCINNGRPDKDYQKLKWKPKGCSLPRLDGLRMLDLLRGKRLVFVGDSINRNMWESLICILRNSVKDKSKVFEANGRVHFKGESSYSFIFKDYNFSVELFVSPFLVQEWEMLVKNGTKKETLRLDLVGRSSNQYKDADIIIFNTGHWWTHDKTSKGILIHIHVFLIVSNCSGGQWNSGGQCNSEIVPIKNEKYLRQYPPKMRVLEKVLRNMKTRVTYLNVTKMTDFRKDGHPSIYRKQNLSPDERKSPLMYQDCSHWCLPGVPDTWNEILYAELLMKQYQYRNQNQNQH*