AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003042.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003042.01.T01 MTR_8g102580 68.909 669 176 6 6 644 2 668 0.0 905
MsG0180003042.01.T01 MTR_5g098680 65.333 675 196 6 6 644 6 678 0.0 859
MsG0180003042.01.T01 MTR_3g114910 59.719 427 108 7 38 461 26 391 3.37e-174 502
MsG0180003042.01.T01 MTR_6g053210 33.051 354 85 7 46 380 5 225 2.78e-44 160
MsG0180003042.01.T01 MTR_6g053210 60.526 76 30 0 569 644 235 310 1.10e-18 87.8
MsG0180003042.01.T01 MTR_1g035420 40.127 157 79 5 247 395 217 366 2.48e-19 92.8
MsG0180003042.01.T01 MTR_6g061270 35.928 167 91 5 247 403 223 383 9.38e-19 90.9
MsG0180003042.01.T01 MTR_8g070070 40.881 159 78 6 247 395 325 477 6.33e-18 88.6
MsG0180003042.01.T01 MTR_6g061200 34.731 167 93 5 247 403 223 383 2.54e-17 86.3
MsG0180003042.01.T01 MTR_7g088370 35.802 162 86 5 247 400 263 414 4.36e-17 85.9
MsG0180003042.01.T01 MTR_8g071030 38.365 159 82 5 247 395 305 457 8.74e-17 84.7
MsG0180003042.01.T01 MTR_7g084090 34.524 168 93 5 247 403 285 446 1.11e-16 84.3
MsG0180003042.01.T01 MTR_7g084090 34.524 168 93 5 247 403 285 446 1.68e-16 84.0
MsG0180003042.01.T01 MTR_8g070075 37.736 159 83 6 247 395 318 470 1.77e-15 80.5
MsG0180003042.01.T01 MTR_4g010550 33.987 153 90 3 247 396 49 193 1.18e-14 77.4
MsG0180003042.01.T01 MTR_1g035400 34.177 158 89 5 247 395 134 285 6.47e-13 72.0
MsG0180003042.01.T01 MTR_3g011440 32.759 174 100 5 237 400 188 354 1.30e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003042.01.T01 AT1G57820 53.758 612 230 9 8 573 6 610 0.0 661
MsG0180003042.01.T01 AT1G57820 53.758 612 230 9 8 573 6 610 0.0 661
MsG0180003042.01.T01 AT1G57820 53.268 612 230 10 8 573 6 607 0.0 650
MsG0180003042.01.T01 AT5G39550 53.769 597 224 13 8 570 6 584 0.0 629
MsG0180003042.01.T01 AT1G66040 53.559 590 225 12 8 563 6 580 0.0 616
MsG0180003042.01.T01 AT1G66050 53.220 590 227 11 8 563 6 580 0.0 613
MsG0180003042.01.T01 AT1G57800 49.186 614 243 14 6 558 4 609 0.0 583
MsG0180003042.01.T01 AT1G57800 48.940 613 242 14 6 558 4 605 0.0 577
MsG0180003042.01.T01 AT4G08590 48.283 466 175 14 8 448 6 430 1.30e-136 408
MsG0180003042.01.T01 AT4G08590 48.394 467 174 15 8 448 6 431 1.25e-135 405
MsG0180003042.01.T01 AT4G08590 48.018 454 169 15 8 435 6 418 6.06e-129 387
MsG0180003042.01.T01 AT4G08590 46.651 418 156 15 8 399 6 382 8.65e-112 342
MsG0180003042.01.T01 AT4G08590 45.178 394 150 14 8 376 6 358 2.66e-99 308
MsG0180003042.01.T01 AT4G08590 45.178 394 150 14 8 376 6 358 2.66e-99 308
MsG0180003042.01.T01 AT2G33290 38.854 157 81 5 247 396 211 359 2.84e-18 89.4
MsG0180003042.01.T01 AT2G33290 38.854 157 81 5 247 396 211 359 2.84e-18 89.4
MsG0180003042.01.T01 AT2G33290 38.854 157 81 5 247 396 211 359 2.84e-18 89.4
MsG0180003042.01.T01 AT2G33290 38.854 157 81 5 247 396 211 359 2.84e-18 89.4
MsG0180003042.01.T01 AT2G35160 33.761 234 117 9 204 427 307 512 1.14e-17 87.8
MsG0180003042.01.T01 AT2G35160 33.761 234 117 9 204 427 343 548 1.53e-17 87.4
MsG0180003042.01.T01 AT2G35160 33.761 234 117 9 204 427 343 548 1.53e-17 87.4
MsG0180003042.01.T01 AT2G35160 33.761 234 117 9 204 427 343 548 1.53e-17 87.4
MsG0180003042.01.T01 AT2G35160 33.761 234 117 9 204 427 343 548 1.53e-17 87.4
MsG0180003042.01.T01 AT2G22740 37.419 155 91 4 247 396 334 487 3.68e-17 86.3
MsG0180003042.01.T01 AT2G22740 37.419 155 91 4 247 396 334 487 3.68e-17 86.3
MsG0180003042.01.T01 AT5G13960 35.119 168 92 4 247 403 153 314 3.70e-17 85.9
MsG0180003042.01.T01 AT4G13460 37.195 164 88 5 247 403 209 364 4.46e-17 85.5
MsG0180003042.01.T01 AT4G13460 37.195 164 88 5 247 403 209 364 4.46e-17 85.5
MsG0180003042.01.T01 AT5G13960 36.025 161 86 4 247 396 19 173 5.37e-17 84.7
MsG0180003042.01.T01 AT5G04940 35.758 165 87 5 247 401 215 370 1.04e-16 84.3
MsG0180003042.01.T01 AT5G04940 35.758 165 87 5 247 401 215 370 1.04e-16 84.3
MsG0180003042.01.T01 AT1G73100 34.395 157 88 5 247 396 212 360 5.03e-13 72.8

Find 158 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCAGTCAGTTGCTCTTTC+TGG 0.065244 1:-55506155 MsG0180003042.01.T01:CDS
ACCTATAATTCAGGAGTTTA+AGG 0.146808 1:-55505440 MsG0180003042.01.T01:CDS
ACGATTCCAATAGATCATTT+TGG 0.199264 1:-55506317 MsG0180003042.01.T01:CDS
CGGTGAGTGGTTCCTTTATA+CGG 0.252259 1:-55506108 MsG0180003042.01.T01:CDS
GAGAAATGTTGGCGCAAAAT+TGG 0.255568 1:-55505783 MsG0180003042.01.T01:CDS
GACCAGCAATCCCCGCAATA+TGG 0.259357 1:+55506192 None:intergenic
GCTATCCTGTTCGTGTTATA+AGG 0.262250 1:-55505977 MsG0180003042.01.T01:intron
CCCCATATTGCGGGGATTGC+TGG 0.290706 1:-55506194 MsG0180003042.01.T01:CDS
TCATATCTCACTCCAACTTT+TGG 0.302957 1:+55505822 None:intergenic
TTCCACCACTTCCCGTATAA+AGG 0.309213 1:+55506096 None:intergenic
ATAGGTTAATAAAGAAATAA+TGG 0.310053 1:-55503078 MsG0180003042.01.T01:intron
TCCTTAAACTCCTGAATTAT+AGG 0.310622 1:+55505439 None:intergenic
GGCAACTTTGTTGATGTCAT+TGG 0.316463 1:+55507066 None:intergenic
GTAACAAAGGTACCAATAAA+AGG 0.321560 1:-55506061 MsG0180003042.01.T01:CDS
TTGGTATGCAGTGATTTATT+AGG 0.326326 1:-55505481 MsG0180003042.01.T01:intron
GGATTCTTTATCATCTTTGC+TGG 0.326626 1:+55506530 None:intergenic
TTCTCGATACGTCTCTTTGC+AGG 0.326727 1:+55507195 None:intergenic
CAATTGCTTGAATTGTAAAA+TGG 0.333749 1:-55506558 MsG0180003042.01.T01:CDS
ATCGGTCCAAAATGATCTAT+TGG 0.338198 1:+55506311 None:intergenic
AAATATTGATGAGGAGGAAT+TGG 0.338442 1:-55502835 MsG0180003042.01.T01:CDS
GGGTTCTTGTTGGTGATACA+TGG 0.342233 1:-55506256 MsG0180003042.01.T01:CDS
GATAGGGTTATAAAGTTTGC+AGG 0.357866 1:-55505647 MsG0180003042.01.T01:intron
TTAAGACTCAGTTGCCAAAA+AGG 0.359434 1:-55505999 MsG0180003042.01.T01:CDS
GCAACTTTGTTGATGTCATT+GGG 0.371718 1:+55507067 None:intergenic
CCGACCACTACCTATAATTC+AGG 0.374768 1:-55505449 MsG0180003042.01.T01:CDS
TTTGTTTAGCGATGAAGAAT+TGG 0.375796 1:-55507035 MsG0180003042.01.T01:CDS
CTGATCAACAATTTAAAGAT+AGG 0.376098 1:-55506031 MsG0180003042.01.T01:CDS
TTCAGGAGGAAAAGGGTTGC+TGG 0.389484 1:-55504025 MsG0180003042.01.T01:intron
TTCTGCAAAGTCTGCCTTGA+GGG 0.390533 1:-55503691 MsG0180003042.01.T01:CDS
ATACAAATTTCAGGAGGAAA+AGG 0.391935 1:-55504033 MsG0180003042.01.T01:intron
TTCCCACTACAATCTATGAT+TGG 0.394717 1:-55507111 MsG0180003042.01.T01:CDS
AAATGGATTAAGGATGGAAA+TGG 0.405164 1:-55506587 MsG0180003042.01.T01:CDS
CTCCCTTCGAAATATAACTT+TGG 0.415102 1:+55503656 None:intergenic
TTTATAGAATTGAGAAATGT+TGG 0.416474 1:-55505794 MsG0180003042.01.T01:CDS
TCCATTTCAGAAAACACTTT+AGG 0.419215 1:+55506603 None:intergenic
ACCAGCAATCCCCGCAATAT+GGG 0.421552 1:+55506193 None:intergenic
ACTCTCAGGTCTTGCTAGCT+TGG 0.432414 1:+55506469 None:intergenic
CCAACGAGAGGCTGAACAAA+TGG 0.436811 1:-55503039 MsG0180003042.01.T01:CDS
CTGAATTATAGGTAGTGGTC+GGG 0.437762 1:+55505450 None:intergenic
AGGAAAAGGGTTGCTGGTTG+TGG 0.439545 1:-55504019 MsG0180003042.01.T01:CDS
GAATGATCCAACAAGGAGTC+GGG 0.443795 1:-55506279 MsG0180003042.01.T01:CDS
ACTGAGAGAACAAAGAAATC+AGG 0.444069 1:-55506374 MsG0180003042.01.T01:CDS
GGAGGAATGTTTCTCCTTGT+GGG 0.444207 1:+55505851 None:intergenic
ATGCTTGCTCCAACACTCTC+AGG 0.446241 1:+55506455 None:intergenic
TGATACATGGGGAGATAGGA+TGG 0.447018 1:-55506243 MsG0180003042.01.T01:CDS
CGCCAGAAAGAGCAACTGAC+TGG 0.449819 1:+55506153 None:intergenic
TAGGATGGAATGTAAGCAAT+GGG 0.454356 1:-55506228 MsG0180003042.01.T01:CDS
ATGTATGAAGAACTTGTTGC+TGG 0.459347 1:-55507007 MsG0180003042.01.T01:CDS
ACAAACCTTATAACACGAAC+AGG 0.459522 1:+55505972 None:intergenic
ATCAACCTTGTCCATGGAGC+TGG 0.459843 1:+55505597 None:intergenic
GGATCATTCTCAGCAATAAT+CGG 0.463917 1:+55506293 None:intergenic
CCATTTGTTCAGCCTCTCGT+TGG 0.465410 1:+55503039 None:intergenic
TCCCACTACAATCTATGATT+GGG 0.467641 1:-55507110 MsG0180003042.01.T01:CDS
CTAACAGTGACAGGTCTCTC+AGG 0.469314 1:+55506899 None:intergenic
TTTCTGAAATGGATTAAGGA+TGG 0.470182 1:-55506593 MsG0180003042.01.T01:CDS
TACAAATTTCAGGAGGAAAA+GGG 0.470573 1:-55504032 MsG0180003042.01.T01:intron
GGTTCTTGTTGGTGATACAT+GGG 0.474741 1:-55506255 MsG0180003042.01.T01:CDS
TCAGGAAAAGCTAATGTTGT+TGG 0.481646 1:-55506356 MsG0180003042.01.T01:CDS
AGTCAGTTGCTCTTTCTGGC+GGG 0.488233 1:-55506151 MsG0180003042.01.T01:CDS
CATGCTGGATGATAAGATAG+AGG 0.489748 1:-55502976 MsG0180003042.01.T01:CDS
AAAGGAAAGGTGATCCATCA+TGG 0.491109 1:-55505399 MsG0180003042.01.T01:CDS
TCCTCCTATGCACCAAAAGT+TGG 0.491235 1:-55505834 MsG0180003042.01.T01:CDS
TCAGTCTTGTAACAAGTGTC+AGG 0.494666 1:+55506392 None:intergenic
TGGTTCCTTTATACGGGAAG+TGG 0.496746 1:-55506101 MsG0180003042.01.T01:CDS
TGAGCACAAGGTGTTGTAAG+AGG 0.501144 1:+55503718 None:intergenic
TGCTAGCTTGGCCACACGAA+TGG 0.503619 1:+55506481 None:intergenic
AAAGGTGTCCTTCAAAATCA+AGG 0.505676 1:-55503907 MsG0180003042.01.T01:CDS
AAGTGATGAAATTCTCATGC+TGG 0.508594 1:-55502991 MsG0180003042.01.T01:CDS
AACTCCTGAATTATAGGTAG+TGG 0.509776 1:+55505445 None:intergenic
GCAGGCCATGCATACGCCAT+TGG 0.521132 1:+55507213 None:intergenic
AGGAGGAATGTTTCTCCTTG+TGG 0.521454 1:+55505850 None:intergenic
ATCGGCTTCTTACTAAGTGG+TGG 0.526287 1:+55503987 None:intergenic
CAAAAGAAACTAACAGTGAC+AGG 0.526842 1:+55506890 None:intergenic
TGGCCAAAGTTATATTTCGA+AGG 0.527796 1:-55503659 MsG0180003042.01.T01:CDS
CGATGTTAGTTGAACAAGTA+GGG 0.527869 1:+55503611 None:intergenic
AATTAATTGTTCATACTGCA+TGG 0.529764 1:-55506927 MsG0180003042.01.T01:CDS
GTTTAGCGATGAAGAATTGG+CGG 0.530457 1:-55507032 MsG0180003042.01.T01:CDS
ATCGCTAAACAAAGGTGGAC+TGG 0.533268 1:+55507045 None:intergenic
TCCTCTACTGAAAACAACAT+TGG 0.535789 1:-55506983 MsG0180003042.01.T01:CDS
AAGAGGAGGAAAGGTAATGA+AGG 0.536156 1:-55502882 MsG0180003042.01.T01:CDS
GGTGAGTGGTTCCTTTATAC+GGG 0.536258 1:-55506107 MsG0180003042.01.T01:CDS
CAGTCAGTTGCTCTTTCTGG+CGG 0.537914 1:-55506152 MsG0180003042.01.T01:CDS
GGCCAAAGTTATATTTCGAA+GGG 0.540414 1:-55503658 MsG0180003042.01.T01:CDS
ATCTGAATGCTCCACAAAAG+AGG 0.543212 1:-55502899 MsG0180003042.01.T01:CDS
AGAATGATCCAACAAGGAGT+CGG 0.543910 1:-55506280 MsG0180003042.01.T01:CDS
GGCTTCTTACTAAGTGGTGG+AGG 0.546603 1:+55503990 None:intergenic
GGAAGAAAATATTGATGAGG+AGG 0.546941 1:-55502841 MsG0180003042.01.T01:CDS
GAGGAAAGGTAATGAAGGCA+AGG 0.549733 1:-55502877 MsG0180003042.01.T01:CDS
GAGCACAAGGTGTTGTAAGA+GGG 0.552772 1:+55503719 None:intergenic
CTAGCAAGACCTGAGAGTGT+TGG 0.554526 1:-55506464 MsG0180003042.01.T01:CDS
TTCCTTTATACGGGAAGTGG+TGG 0.555246 1:-55506098 MsG0180003042.01.T01:CDS
TGATTATCTTCAAAATCCAC+AGG 0.558282 1:-55503587 MsG0180003042.01.T01:intron
GGAAAAGCTAATGTTGTTGG+TGG 0.558380 1:-55506353 MsG0180003042.01.T01:CDS
TTGGTGATACATGGGGAGAT+AGG 0.560509 1:-55506247 MsG0180003042.01.T01:CDS
TTGCAGAAGTTGTGAGCACA+AGG 0.561266 1:+55503706 None:intergenic
AGGTAATGAAGGCAAGGTTG+TGG 0.563364 1:-55502871 MsG0180003042.01.T01:CDS
CTTACATCAAAGTCCCATGA+TGG 0.566094 1:+55505385 None:intergenic
CAGCTTCCTTGTGACTCCAA+TGG 0.569846 1:-55507229 MsG0180003042.01.T01:CDS
GCAAAACTTGCAATAAGCCA+TGG 0.571037 1:-55507156 MsG0180003042.01.T01:CDS
GCCAGAAAGAGCAACTGACT+GGG 0.572445 1:+55506154 None:intergenic
TGTCCTTCAAAATCAAGGAT+AGG 0.577288 1:-55503902 MsG0180003042.01.T01:CDS
TTCATCGGCTTCTTACTAAG+TGG 0.577940 1:+55503984 None:intergenic
ATCAAGGATAGGTTATTGAA+AGG 0.579801 1:-55503891 MsG0180003042.01.T01:intron
CCTGAATTATAGGTAGTGGT+CGG 0.580206 1:+55505449 None:intergenic
CATAGATTGTAGTGGGAAGG+AGG 0.581188 1:+55507116 None:intergenic
AGGCAAGGTTGTGGTGAACA+TGG 0.583775 1:-55502862 MsG0180003042.01.T01:CDS
TGACTCCAATGGCGTATGCA+TGG 0.584830 1:-55507218 MsG0180003042.01.T01:CDS
AGTGGTGGAAAGGATACTGC+TGG 0.587233 1:-55506083 MsG0180003042.01.T01:CDS
TCCCAATCATAGATTGTAGT+GGG 0.591503 1:+55507109 None:intergenic
GTTGGCGAACGCCATTCGTG+TGG 0.592073 1:-55506492 MsG0180003042.01.T01:CDS
ACAATTTAAAGATAGGAATG+AGG 0.592075 1:-55506024 MsG0180003042.01.T01:CDS
GTGACAATGAGCCAGCTCCA+TGG 0.592691 1:-55505608 MsG0180003042.01.T01:CDS
GCTCCACAAAAGAGGAGGAA+AGG 0.592739 1:-55502891 MsG0180003042.01.T01:CDS
ATGAGCCAGCTCCATGGACA+AGG 0.595160 1:-55505602 MsG0180003042.01.T01:intron
TTTGCAGGTATTTGTTTGTG+AGG 0.596884 1:-55505632 MsG0180003042.01.T01:CDS
ATCTATGATTGGGAATGCCC+TGG 0.598470 1:-55507100 MsG0180003042.01.T01:CDS
CATGGAAGAAAATATTGATG+AGG 0.602211 1:-55502844 MsG0180003042.01.T01:CDS
TCTTCATCGCTAAACAAAGG+TGG 0.604543 1:+55507040 None:intergenic
ATGACGAAGACCACGGTGAG+TGG 0.606110 1:-55506121 MsG0180003042.01.T01:CDS
AGTAAACATGGCATATGCCA+TGG 0.607296 1:+55507139 None:intergenic
CCAGCAATCCCCGCAATATG+GGG 0.607358 1:+55506194 None:intergenic
AAGGATACTGCTGGTAACAA+AGG 0.607522 1:-55506074 MsG0180003042.01.T01:CDS
TTATACGGGAAGTGGTGGAA+AGG 0.608263 1:-55506093 MsG0180003042.01.T01:CDS
ATAGGATGGAATGTAAGCAA+TGG 0.609099 1:-55506229 MsG0180003042.01.T01:CDS
AATCATAGATTGTAGTGGGA+AGG 0.610898 1:+55507113 None:intergenic
GTTCTTGTTGGTGATACATG+GGG 0.611481 1:-55506254 MsG0180003042.01.T01:CDS
TTCCCAATCATAGATTGTAG+TGG 0.613702 1:+55507108 None:intergenic
AAAGTTGGAGTGAGATATGA+CGG 0.614186 1:-55505819 MsG0180003042.01.T01:CDS
AAGGAAAGGTGATCCATCAT+GGG 0.617640 1:-55505398 MsG0180003042.01.T01:CDS
ATGATCCAACAAGGAGTCGG+GGG 0.619653 1:-55506277 MsG0180003042.01.T01:CDS
ACGATGTTAGTTGAACAAGT+AGG 0.620801 1:+55503610 None:intergenic
AGCACAAGGTGTTGTAAGAG+GGG 0.621158 1:+55503720 None:intergenic
TGAATTATAGGTAGTGGTCG+GGG 0.621301 1:+55505451 None:intergenic
ATTGCTGGTCAAAGTAGTCA+AGG 0.624322 1:-55506179 MsG0180003042.01.T01:CDS
AATGATCCAACAAGGAGTCG+GGG 0.627888 1:-55506278 MsG0180003042.01.T01:CDS
ATGCAGTTGACATTACTGAA+AGG 0.633917 1:-55505417 MsG0180003042.01.T01:CDS
GTTGACATTACTGAAAGGAA+AGG 0.635029 1:-55505412 MsG0180003042.01.T01:CDS
ATAGGATCGACAATGTTCAT+CGG 0.638296 1:+55503969 None:intergenic
AATATTTCACTTGAATCACA+AGG 0.638799 1:+55502945 None:intergenic
TGGAGCAAGCATTTCTACCG+AGG 0.639066 1:-55506444 MsG0180003042.01.T01:CDS
GGCCAGAAAAGACACCCTCA+AGG 0.639715 1:+55503677 None:intergenic
TTATAGGTAGTGGTCGGGGA+CGG 0.640704 1:+55505455 None:intergenic
GTGAACAATATGAGAAACCT+CGG 0.641296 1:+55506427 None:intergenic
GAAAAGCTAATGTTGTTGGT+GGG 0.645095 1:-55506352 MsG0180003042.01.T01:CDS
AATTCTTCATCGCTAAACAA+AGG 0.645742 1:+55507037 None:intergenic
TACATTGATGACGAAGACCA+CGG 0.647956 1:-55506128 MsG0180003042.01.T01:CDS
CTTCTGCAAAGTCTGCCTTG+AGG 0.654282 1:-55503692 MsG0180003042.01.T01:CDS
CATAGAATCACTCCAACGAG+AGG 0.656194 1:-55503051 MsG0180003042.01.T01:CDS
TGAATGCTCCACAAAAGAGG+AGG 0.660195 1:-55502896 MsG0180003042.01.T01:CDS
CATACGCCATTGGAGTCACA+AGG 0.662456 1:+55507223 None:intergenic
TCATTGGTTCAGACTCCATG+TGG 0.662877 1:-55506638 MsG0180003042.01.T01:intron
TCATTGGGCTGAGAACAACC+AGG 0.663523 1:+55507082 None:intergenic
GTGGGAAGGAGGAGTAAACA+TGG 0.666201 1:+55507127 None:intergenic
TTGCTGAGAATGATCCAACA+AGG 0.692315 1:-55506286 MsG0180003042.01.T01:CDS
TGATCCAACAAGGAGTCGGG+GGG 0.700238 1:-55506276 MsG0180003042.01.T01:CDS
CATTGGGCTGAGAACAACCA+GGG 0.719376 1:+55507083 None:intergenic
TATAAAGGAACCACTCACCG+TGG 0.734894 1:+55506111 None:intergenic
AGGATGGAATGTAAGCAATG+GGG 0.764192 1:-55506227 MsG0180003042.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATATTTATTATTGAC+GGG - Chr1:55504377-55504396 MsG0180003042.01.T01:intron 10.0%
!! CATTTAATATTTATTATTGA+CGG - Chr1:55504376-55504395 MsG0180003042.01.T01:intron 10.0%
!!! AATATCAATGTTTTTAATAT+TGG - Chr1:55506552-55506571 MsG0180003042.01.T01:CDS 10.0%
!!! TAAAAAAGTTATTAGTTTAT+TGG + Chr1:55506903-55506922 None:intergenic 10.0%
!! AAACATAAATAAATGTAGAA+AGG + Chr1:55505758-55505777 None:intergenic 15.0%
!! AAATGTTTAATATGATAACT+TGG - Chr1:55504545-55504564 MsG0180003042.01.T01:intron 15.0%
!! ACTTTATCATTATGATTATT+AGG + Chr1:55504818-55504837 None:intergenic 15.0%
!! ATAGGTTAATAAAGAAATAA+TGG - Chr1:55506981-55507000 MsG0180003042.01.T01:CDS 15.0%
!! ATGATTAAACATTTCAATTA+AGG + Chr1:55503346-55503365 None:intergenic 15.0%
!! TAATTGTTAAAGAGATAAAA+GGG + Chr1:55503200-55503219 None:intergenic 15.0%
!! TGAAAATATGAAATTTAGAA+AGG - Chr1:55506779-55506798 MsG0180003042.01.T01:intron 15.0%
!! TTAATTGTTAAAGAGATAAA+AGG + Chr1:55503201-55503220 None:intergenic 15.0%
!! TTTAATATTTATTATTGACG+GGG - Chr1:55504378-55504397 MsG0180003042.01.T01:intron 15.0%
!!! CTAAATTTCATATTTTCAAA+TGG + Chr1:55506777-55506796 None:intergenic 15.0%
!!! TGTATTGATTTATTTTGTTT+AGG - Chr1:55504184-55504203 MsG0180003042.01.T01:intron 15.0%
!!! TTTTGTAATAATAAAACAAG+TGG - Chr1:55504522-55504541 MsG0180003042.01.T01:intron 15.0%
!!! TTTTTTTTCTAAGATTTGTA+AGG - Chr1:55505984-55506003 MsG0180003042.01.T01:CDS 15.0%
!! AATTGTTAAAGAGATAAAAG+GGG + Chr1:55503199-55503218 None:intergenic 20.0%
!! AATTTGTGGATACAATTAAA+AGG + Chr1:55506708-55506727 None:intergenic 20.0%
!! CAATTAAAAGGAATTCAATA+TGG + Chr1:55506696-55506715 None:intergenic 20.0%
!! TAAAAGTTTCATGGTAAATT+AGG + Chr1:55506751-55506770 None:intergenic 20.0%
!! TAAATAAATGTAGAAAGGAA+TGG + Chr1:55505753-55505772 None:intergenic 20.0%
!! TATCATATATATTCACGAAT+AGG + Chr1:55504155-55504174 None:intergenic 20.0%
!! TTAAGTATTTAAAGACATCA+TGG + Chr1:55506825-55506844 None:intergenic 20.0%
!! TTTATAGAATTGAGAAATGT+TGG - Chr1:55504265-55504284 MsG0180003042.01.T01:intron 20.0%
!! TTTGAATTCATACAAATTTC+AGG - Chr1:55506017-55506036 MsG0180003042.01.T01:CDS 20.0%
!!! AAATGGTTTTAAAAGTTTCA+TGG + Chr1:55506760-55506779 None:intergenic 20.0%
!!! AGCTCATTTTCAAAATTTAT+AGG - Chr1:55505430-55505449 MsG0180003042.01.T01:CDS 20.0%
!!! CAATTTTCAATTTGATGTAT+TGG - Chr1:55506927-55506946 MsG0180003042.01.T01:CDS 20.0%
!!! TAACTTAATCTAGTTTGTTA+TGG - Chr1:55503298-55503317 MsG0180003042.01.T01:intron 20.0%
!!! TGATTCAAGTGAAATATTTT+TGG - Chr1:55507119-55507138 MsG0180003042.01.T01:CDS 20.0%
!!! TTGGTATTATTATTTGCTAT+TGG - Chr1:55506571-55506590 MsG0180003042.01.T01:CDS 20.0%
! AAACTAGAAATTGACAAATG+TGG - Chr1:55504898-55504917 MsG0180003042.01.T01:intron 25.0%
! AACAACCTACAACATATTAA+TGG - Chr1:55504847-55504866 MsG0180003042.01.T01:intron 25.0%
! AACAGATCATATATTCCTAT+TGG + Chr1:55505651-55505670 None:intergenic 25.0%
! AACCAACAAGACTATAATAT+AGG - Chr1:55505045-55505064 MsG0180003042.01.T01:intron 25.0%
! AACTAGAAATTGACAAATGT+GGG - Chr1:55504899-55504918 MsG0180003042.01.T01:intron 25.0%
! AATATTTCACTTGAATCACA+AGG + Chr1:55507117-55507136 None:intergenic 25.0%
! AATTAATTGTTCATACTGCA+TGG - Chr1:55503132-55503151 MsG0180003042.01.T01:intron 25.0%
! ACAATTTAAAGATAGGAATG+AGG - Chr1:55504035-55504054 MsG0180003042.01.T01:intron 25.0%
! ACCAACAAGACTATAATATA+GGG - Chr1:55505046-55505065 MsG0180003042.01.T01:intron 25.0%
! AGTAATTTCGTAGTAATTTG+TGG + Chr1:55506722-55506741 None:intergenic 25.0%
! ATTGTTAAAGAGATAAAAGG+GGG + Chr1:55503198-55503217 None:intergenic 25.0%
! CAATTGCTTGAATTGTAAAA+TGG - Chr1:55503501-55503520 MsG0180003042.01.T01:intron 25.0%
! CTGATCAACAATTTAAAGAT+AGG - Chr1:55504028-55504047 MsG0180003042.01.T01:intron 25.0%
! TAAATGATTGATAAACCACT+AGG + Chr1:55504362-55504381 None:intergenic 25.0%
! TAATCCCTTCATTATTTGAT+TGG + Chr1:55506655-55506674 None:intergenic 25.0%
! TTATTTAAGAGATCACCAAA+TGG + Chr1:55505875-55505894 None:intergenic 25.0%
! TTCACCAATCAAATAATGAA+GGG - Chr1:55506648-55506667 MsG0180003042.01.T01:intron 25.0%
! TTGATAGATTTACTTCCATT+TGG - Chr1:55505857-55505876 MsG0180003042.01.T01:intron 25.0%
! TTTCACCAATCAAATAATGA+AGG - Chr1:55506647-55506666 MsG0180003042.01.T01:intron 25.0%
!! ATAACTTGGATCAATTTTGT+TGG - Chr1:55504559-55504578 MsG0180003042.01.T01:intron 25.0%
!! CTTAATTTTCTGATGATTTC+TGG - Chr1:55503238-55503257 MsG0180003042.01.T01:intron 25.0%
!! TCCAAAAATCAATTTTCAGT+TGG - Chr1:55503549-55503568 MsG0180003042.01.T01:intron 25.0%
!!! AATATGTTGTAGGTTGTTTT+TGG + Chr1:55504845-55504864 None:intergenic 25.0%
!!! ATTTTGAAAATGAGCTATTG+AGG + Chr1:55505426-55505445 None:intergenic 25.0%
!!! GTATTTAGTTTTTCTCAAAC+AGG + Chr1:55505246-55505265 None:intergenic 25.0%
!!! TCTATTTTTACTCGATCAAT+AGG + Chr1:55506111-55506130 None:intergenic 25.0%
!!! TTCCTCATATTTTTTTTCCA+TGG - Chr1:55504491-55504510 MsG0180003042.01.T01:intron 25.0%
AAAAAAATCAACCTTGTCCA+TGG + Chr1:55504471-55504490 None:intergenic 30.0%
AAATATTGATGAGGAGGAAT+TGG - Chr1:55507224-55507243 MsG0180003042.01.T01:CDS 30.0%
AACAAACACAACTAGGATAT+AGG - Chr1:55505461-55505480 MsG0180003042.01.T01:CDS 30.0%
AACCGATAATTTAACCACAA+GGG - Chr1:55504992-55505011 MsG0180003042.01.T01:intron 30.0%
AAGGTTACTAATTATCAGCA+AGG + Chr1:55506202-55506221 None:intergenic 30.0%
AATTCTTCATCGCTAAACAA+AGG + Chr1:55503025-55503044 None:intergenic 30.0%
ACAAGGATTTAACTACTTCA+CGG - Chr1:55505303-55505322 MsG0180003042.01.T01:intron 30.0%
ACCTATAATTCAGGAGTTTA+AGG - Chr1:55504619-55504638 MsG0180003042.01.T01:intron 30.0%
AGTAAATACACTGTTACATG+TGG - Chr1:55506263-55506282 MsG0180003042.01.T01:CDS 30.0%
ATAAATTGAGTAAGACCTAG+TGG - Chr1:55504344-55504363 MsG0180003042.01.T01:intron 30.0%
ATAAGGAATGAGGCAAAATA+TGG - Chr1:55505541-55505560 MsG0180003042.01.T01:intron 30.0%
ATACAAATTTCAGGAGGAAA+AGG - Chr1:55506026-55506045 MsG0180003042.01.T01:CDS 30.0%
ATCAAGGATAGGTTATTGAA+AGG - Chr1:55506168-55506187 MsG0180003042.01.T01:CDS 30.0%
ATCCCTTGTGGTTAAATTAT+CGG + Chr1:55504997-55505016 None:intergenic 30.0%
CAAAAGAGAATATCAACACA+AGG - Chr1:55505286-55505305 MsG0180003042.01.T01:intron 30.0%
CAACAAGACTATAATATAGG+GGG - Chr1:55505048-55505067 MsG0180003042.01.T01:intron 30.0%
CATAATTAGTCCAAGAAATG+TGG - Chr1:55504969-55504988 MsG0180003042.01.T01:intron 30.0%
CATGGAAGAAAATATTGATG+AGG - Chr1:55507215-55507234 MsG0180003042.01.T01:CDS 30.0%
CCAACAAGACTATAATATAG+GGG - Chr1:55505047-55505066 MsG0180003042.01.T01:intron 30.0%
CCTCAAAAGAATGTTAAGTA+CGG + Chr1:55505816-55505835 None:intergenic 30.0%
CTAAGATAACAAACACAACT+AGG - Chr1:55505454-55505473 MsG0180003042.01.T01:CDS 30.0%
GAAAGATTCAACTAATACGT+TGG + Chr1:55505329-55505348 None:intergenic 30.0%
GAATTCATACAAATTTCAGG+AGG - Chr1:55506020-55506039 MsG0180003042.01.T01:CDS 30.0%
GAGCTAAGAAAAAATAGACA+AGG + Chr1:55506221-55506240 None:intergenic 30.0%
GGAATTGGAAAGCAAAAAAA+TGG - Chr1:55507239-55507258 MsG0180003042.01.T01:CDS 30.0%
GTAAATACACTGTTACATGT+GGG - Chr1:55506264-55506283 MsG0180003042.01.T01:CDS 30.0%
GTCCATGGAAAAAAAATATG+AGG + Chr1:55504496-55504515 None:intergenic 30.0%
TAAGGAATGAGGCAAAATAT+GGG - Chr1:55505542-55505561 MsG0180003042.01.T01:intron 30.0%
TACAAATTTCAGGAGGAAAA+GGG - Chr1:55506027-55506046 MsG0180003042.01.T01:CDS 30.0%
TCCATTTCAGAAAACACTTT+AGG + Chr1:55503459-55503478 None:intergenic 30.0%
TCCTTAAACTCCTGAATTAT+AGG + Chr1:55504623-55504642 None:intergenic 30.0%
TCTCACCATTAATATGTTGT+AGG + Chr1:55504855-55504874 None:intergenic 30.0%
TGATTATCTTCAAAATCCAC+AGG - Chr1:55506472-55506491 MsG0180003042.01.T01:CDS 30.0%
TGTTGTAATGTTGTTGTCAT+TGG - Chr1:55503405-55503424 MsG0180003042.01.T01:intron 30.0%
TTGGTATGCAGTGATTTATT+AGG - Chr1:55504578-55504597 MsG0180003042.01.T01:intron 30.0%
TTTGTTTAGCGATGAAGAAT+TGG - Chr1:55503024-55503043 MsG0180003042.01.T01:CDS 30.0%
! ACGATTCCAATAGATCATTT+TGG - Chr1:55503742-55503761 MsG0180003042.01.T01:CDS 30.0%
! ATCAGATGATTGCCTTTTAT+TGG + Chr1:55504013-55504032 None:intergenic 30.0%
! CACTTTAGTTGATTCTTTGT+AGG - Chr1:55505613-55505632 MsG0180003042.01.T01:CDS 30.0%
! TAACCTATCCTTGATTTTGA+AGG + Chr1:55506163-55506182 None:intergenic 30.0%
!! AAATGGATTAAGGATGGAAA+TGG - Chr1:55503472-55503491 MsG0180003042.01.T01:intron 30.0%
!! GCCAACTGAAAATTGATTTT+TGG + Chr1:55503553-55503572 None:intergenic 30.0%
!! GTAACAAAGGTACCAATAAA+AGG - Chr1:55503998-55504017 MsG0180003042.01.T01:CDS 30.0%
!! TTTCTGAAATGGATTAAGGA+TGG - Chr1:55503466-55503485 MsG0180003042.01.T01:intron 30.0%
!!! GTGTTTTCTGAAATGGATTA+AGG - Chr1:55503462-55503481 MsG0180003042.01.T01:intron 30.0%
AAAGTTGGAGTGAGATATGA+CGG - Chr1:55504240-55504259 MsG0180003042.01.T01:intron 35.0%
AACTCCTGAATTATAGGTAG+TGG + Chr1:55504617-55504636 None:intergenic 35.0%
AAGTGATGAAATTCTCATGC+TGG - Chr1:55507068-55507087 MsG0180003042.01.T01:CDS 35.0%
ACAAACCTTATAACACGAAC+AGG + Chr1:55504090-55504109 None:intergenic 35.0%
ACGATGTTAGTTGAACAAGT+AGG + Chr1:55506452-55506471 None:intergenic 35.0%
ACTGAGAGAACAAAGAAATC+AGG - Chr1:55503685-55503704 MsG0180003042.01.T01:CDS 35.0%
AGAGAATGCCACAAAACATA+AGG - Chr1:55505524-55505543 MsG0180003042.01.T01:intron 35.0%
ATAGGATCGACAATGTTCAT+CGG + Chr1:55506093-55506112 None:intergenic 35.0%
ATAGGATGGAATGTAAGCAA+TGG - Chr1:55503830-55503849 MsG0180003042.01.T01:intron 35.0%
ATCGGTCCAAAATGATCTAT+TGG + Chr1:55503751-55503770 None:intergenic 35.0%
ATGAATCAGTCAAACATGAG+TGG - Chr1:55505386-55505405 MsG0180003042.01.T01:intron 35.0%
ATGCAGTTGACATTACTGAA+AGG - Chr1:55504642-55504661 MsG0180003042.01.T01:intron 35.0%
ATTACAAAAACACACGTCCA+TGG + Chr1:55504511-55504530 None:intergenic 35.0%
CAAAAGAAACTAACAGTGAC+AGG + Chr1:55503172-55503191 None:intergenic 35.0%
CGATGTTAGTTGAACAAGTA+GGG + Chr1:55506451-55506470 None:intergenic 35.0%
CTCCCTTCGAAATATAACTT+TGG + Chr1:55506406-55506425 None:intergenic 35.0%
GAAAAGCTAATGTTGTTGGT+GGG - Chr1:55503707-55503726 MsG0180003042.01.T01:CDS 35.0%
GAACCGATAATTTAACCACA+AGG - Chr1:55504991-55505010 MsG0180003042.01.T01:intron 35.0%
GAGAAAAACTTGTGTGCAAA+AGG - Chr1:55505497-55505516 MsG0180003042.01.T01:intron 35.0%
GATAGGGTTATAAAGTTTGC+AGG - Chr1:55504412-55504431 MsG0180003042.01.T01:intron 35.0%
GCAACTTTGTTGATGTCATT+GGG + Chr1:55502995-55503014 None:intergenic 35.0%
GGAAGAAAATATTGATGAGG+AGG - Chr1:55507218-55507237 MsG0180003042.01.T01:CDS 35.0%
GGATCATTCTCAGCAATAAT+CGG + Chr1:55503769-55503788 None:intergenic 35.0%
GGATTCTTTATCATCTTTGC+TGG + Chr1:55503532-55503551 None:intergenic 35.0%
GGCCAAAGTTATATTTCGAA+GGG - Chr1:55506401-55506420 MsG0180003042.01.T01:CDS 35.0%
GTGAACAATATGAGAAACCT+CGG + Chr1:55503635-55503654 None:intergenic 35.0%
GTTGACATTACTGAAAGGAA+AGG - Chr1:55504647-55504666 MsG0180003042.01.T01:intron 35.0%
TAGGATGGAATGTAAGCAAT+GGG - Chr1:55503831-55503850 MsG0180003042.01.T01:intron 35.0%
TCAGGAAAAGCTAATGTTGT+TGG - Chr1:55503703-55503722 MsG0180003042.01.T01:CDS 35.0%
TCCCAATCATAGATTGTAGT+GGG + Chr1:55502953-55502972 None:intergenic 35.0%
TCCCACTACAATCTATGATT+GGG - Chr1:55502949-55502968 MsG0180003042.01.T01:CDS 35.0%
TCCTCTACTGAAAACAACAT+TGG - Chr1:55503076-55503095 MsG0180003042.01.T01:CDS 35.0%
TGAAAGTTTGTCGAGAATTC+CGG + Chr1:55505926-55505945 None:intergenic 35.0%
TGGCCAAAGTTATATTTCGA+AGG - Chr1:55506400-55506419 MsG0180003042.01.T01:CDS 35.0%
TGTCCTTCAAAATCAAGGAT+AGG - Chr1:55506157-55506176 MsG0180003042.01.T01:CDS 35.0%
TGTTACGCCAGAAGAAAAAA+AGG - Chr1:55506134-55506153 MsG0180003042.01.T01:CDS 35.0%
TTAAGACTCAGTTGCCAAAA+AGG - Chr1:55504060-55504079 MsG0180003042.01.T01:intron 35.0%
TTCCCAATCATAGATTGTAG+TGG + Chr1:55502954-55502973 None:intergenic 35.0%
TTCCCACTACAATCTATGAT+TGG - Chr1:55502948-55502967 MsG0180003042.01.T01:CDS 35.0%
TTTGCAGGTATTTGTTTGTG+AGG - Chr1:55504427-55504446 MsG0180003042.01.T01:intron 35.0%
! AATCATAGATTGTAGTGGGA+AGG + Chr1:55502949-55502968 None:intergenic 35.0%
! CCGTACTTAACATTCTTTTG+AGG - Chr1:55505813-55505832 MsG0180003042.01.T01:CDS 35.0%
! GCTTATTGCAAGTTTTGCAA+AGG + Chr1:55502901-55502920 None:intergenic 35.0%
! TCATATCTCACTCCAACTTT+TGG + Chr1:55504240-55504259 None:intergenic 35.0%
! TTAACCACAAGGGATCATTT+TGG - Chr1:55505002-55505021 MsG0180003042.01.T01:intron 35.0%
!! AAAGGTGTCCTTCAAAATCA+AGG - Chr1:55506152-55506171 MsG0180003042.01.T01:CDS 35.0%
!! ATGTATGAAGAACTTGTTGC+TGG - Chr1:55503052-55503071 MsG0180003042.01.T01:CDS 35.0%
!! ATTATCGGTTCCACATTTCT+TGG + Chr1:55504982-55505001 None:intergenic 35.0%
!! CCCCTATATTATAGTCTTGT+TGG + Chr1:55505050-55505069 None:intergenic 35.0%
!! GCCTAAAGTGTTTTCTGAAA+TGG - Chr1:55503455-55503474 MsG0180003042.01.T01:intron 35.0%
!! TATTTTGTTTAGGTCCCACA+AGG - Chr1:55504194-55504213 MsG0180003042.01.T01:intron 35.0%
!!! AAGGACACCTTTTTTTCTTC+TGG + Chr1:55506144-55506163 None:intergenic 35.0%
!!! TCCAATGTTGTTTTCAGTAG+AGG + Chr1:55503080-55503099 None:intergenic 35.0%
AAAGGAAAGGTGATCCATCA+TGG - Chr1:55504660-55504679 MsG0180003042.01.T01:intron 40.0%
AACTCCAAAATGATCCCTTG+TGG + Chr1:55505009-55505028 None:intergenic 40.0%
AAGAGGAGGAAAGGTAATGA+AGG - Chr1:55507177-55507196 MsG0180003042.01.T01:CDS 40.0%
AAGGAAAGGTGATCCATCAT+GGG - Chr1:55504661-55504680 MsG0180003042.01.T01:intron 40.0%
AAGGATACTGCTGGTAACAA+AGG - Chr1:55503985-55504004 MsG0180003042.01.T01:CDS 40.0%
AATACTAGCAGTAGTACCTG+TGG + Chr1:55506491-55506510 None:intergenic 40.0%
AGAATGATCCAACAAGGAGT+CGG - Chr1:55503779-55503798 MsG0180003042.01.T01:intron 40.0%
AGGATGGAATGTAAGCAATG+GGG - Chr1:55503832-55503851 MsG0180003042.01.T01:intron 40.0%
AGGCAAAAATTGTGTCCACA+TGG + Chr1:55503439-55503458 None:intergenic 40.0%
AGTAAACATGGCATATGCCA+TGG + Chr1:55502923-55502942 None:intergenic 40.0%
ATCTGAATGCTCCACAAAAG+AGG - Chr1:55507160-55507179 MsG0180003042.01.T01:CDS 40.0%
ATTGCTGGTCAAAGTAGTCA+AGG - Chr1:55503880-55503899 MsG0180003042.01.T01:intron 40.0%
CATGCTGGATGATAAGATAG+AGG - Chr1:55507083-55507102 MsG0180003042.01.T01:CDS 40.0%
CATTGTTGAGAGCTATGAAC+CGG - Chr1:55505904-55505923 MsG0180003042.01.T01:intron 40.0%
CTTACATCAAAGTCCCATGA+TGG + Chr1:55504677-55504696 None:intergenic 40.0%
GAGAAATGTTGGCGCAAAAT+TGG - Chr1:55504276-55504295 MsG0180003042.01.T01:intron 40.0%
GCAAAACTTGCAATAAGCCA+TGG - Chr1:55502903-55502922 MsG0180003042.01.T01:CDS 40.0%
GCCACAAAACATAAGGAATG+AGG - Chr1:55505531-55505550 MsG0180003042.01.T01:intron 40.0%
GCTATCCTGTTCGTGTTATA+AGG - Chr1:55504082-55504101 MsG0180003042.01.T01:intron 40.0%
GGAAAAGCTAATGTTGTTGG+TGG - Chr1:55503706-55503725 MsG0180003042.01.T01:CDS 40.0%
GGCAACTTTGTTGATGTCAT+TGG + Chr1:55502996-55503015 None:intergenic 40.0%
GTTTAGCGATGAAGAATTGG+CGG - Chr1:55503027-55503046 MsG0180003042.01.T01:CDS 40.0%
TCTTCATCGCTAAACAAAGG+TGG + Chr1:55503022-55503041 None:intergenic 40.0%
TGAGGCAAAATATGGGATCT+AGG - Chr1:55505549-55505568 MsG0180003042.01.T01:intron 40.0%
TTGCTGAGAATGATCCAACA+AGG - Chr1:55503773-55503792 MsG0180003042.01.T01:intron 40.0%
! CCTGAATTATAGGTAGTGGT+CGG + Chr1:55504613-55504632 None:intergenic 40.0%
! CTGAATTATAGGTAGTGGTC+GGG + Chr1:55504612-55504631 None:intergenic 40.0%
! GCCTCATTCCTTATGTTTTG+TGG + Chr1:55505535-55505554 None:intergenic 40.0%
! TCAGTCTTGTAACAAGTGTC+AGG + Chr1:55503670-55503689 None:intergenic 40.0%
! TGAATTATAGGTAGTGGTCG+GGG + Chr1:55504611-55504630 None:intergenic 40.0%
! TGCTCATTTTCCCCATATTG+CGG - Chr1:55503855-55503874 MsG0180003042.01.T01:intron 40.0%
! TTACCTTTCCTCCTCTTTTG+TGG + Chr1:55507174-55507193 None:intergenic 40.0%
!! GGTTCTTGTTGGTGATACAT+GGG - Chr1:55503804-55503823 MsG0180003042.01.T01:intron 40.0%
!! GTTCTTGTTGGTGATACATG+GGG - Chr1:55503805-55503824 MsG0180003042.01.T01:intron 40.0%
!! TACATTGATGACGAAGACCA+CGG - Chr1:55503931-55503950 MsG0180003042.01.T01:CDS 40.0%
!! TTCATCGGCTTCTTACTAAG+TGG + Chr1:55506078-55506097 None:intergenic 40.0%
AATGATCCAACAAGGAGTCG+GGG - Chr1:55503781-55503800 MsG0180003042.01.T01:intron 45.0%
AGGAGGAATGTTTCTCCTTG+TGG + Chr1:55504212-55504231 None:intergenic 45.0%
AGGTAATGAAGGCAAGGTTG+TGG - Chr1:55507188-55507207 MsG0180003042.01.T01:CDS 45.0%
ATCGCTAAACAAAGGTGGAC+TGG + Chr1:55503017-55503036 None:intergenic 45.0%
ATCTATGATTGGGAATGCCC+TGG - Chr1:55502959-55502978 MsG0180003042.01.T01:CDS 45.0%
CATAGAATCACTCCAACGAG+AGG - Chr1:55507008-55507027 MsG0180003042.01.T01:CDS 45.0%
CCGACCACTACCTATAATTC+AGG - Chr1:55504610-55504629 MsG0180003042.01.T01:intron 45.0%
CGGTGAGTGGTTCCTTTATA+CGG - Chr1:55503951-55503970 MsG0180003042.01.T01:CDS 45.0%
GAATGATCCAACAAGGAGTC+GGG - Chr1:55503780-55503799 MsG0180003042.01.T01:intron 45.0%
GAGGAAAGGTAATGAAGGCA+AGG - Chr1:55507182-55507201 MsG0180003042.01.T01:CDS 45.0%
GCTCTATTTCACAAGAGTCG+TGG - Chr1:55504940-55504959 MsG0180003042.01.T01:intron 45.0%
GGAGGAATGTTTCTCCTTGT+GGG + Chr1:55504211-55504230 None:intergenic 45.0%
GGTGAGTGGTTCCTTTATAC+GGG - Chr1:55503952-55503971 MsG0180003042.01.T01:CDS 45.0%
TATAAAGGAACCACTCACCG+TGG + Chr1:55503951-55503970 None:intergenic 45.0%
TCCTCCTATGCACCAAAAGT+TGG - Chr1:55504225-55504244 MsG0180003042.01.T01:intron 45.0%
TGAATGCTCCACAAAAGAGG+AGG - Chr1:55507163-55507182 MsG0180003042.01.T01:CDS 45.0%
TGATACATGGGGAGATAGGA+TGG - Chr1:55503816-55503835 MsG0180003042.01.T01:intron 45.0%
TGGTTCCTTTATACGGGAAG+TGG - Chr1:55503958-55503977 MsG0180003042.01.T01:CDS 45.0%
TTCCACCACTTCCCGTATAA+AGG + Chr1:55503966-55503985 None:intergenic 45.0%
TTCCTTTATACGGGAAGTGG+TGG - Chr1:55503961-55503980 MsG0180003042.01.T01:CDS 45.0%
TTCTCGATACGTCTCTTTGC+AGG + Chr1:55502867-55502886 None:intergenic 45.0%
TTCTGCAAAGTCTGCCTTGA+GGG - Chr1:55506368-55506387 MsG0180003042.01.T01:CDS 45.0%
TTGCAGAAGTTGTGAGCACA+AGG + Chr1:55506356-55506375 None:intergenic 45.0%
! ACGGGGTATCTATGTGTGAT+AGG - Chr1:55504395-55504414 MsG0180003042.01.T01:intron 45.0%
! ATCGGCTTCTTACTAAGTGG+TGG + Chr1:55506075-55506094 None:intergenic 45.0%
! CACGAACAGGATAGCCTTTT+TGG + Chr1:55504077-55504096 None:intergenic 45.0%
! CATAGATTGTAGTGGGAAGG+AGG + Chr1:55502946-55502965 None:intergenic 45.0%
! CGGGGTATCTATGTGTGATA+GGG - Chr1:55504396-55504415 MsG0180003042.01.T01:intron 45.0%
! CTCATTTTCCCCATATTGCG+GGG - Chr1:55503857-55503876 MsG0180003042.01.T01:intron 45.0%
! GCTCATTTTCCCCATATTGC+GGG - Chr1:55503856-55503875 MsG0180003042.01.T01:intron 45.0%
! TTATACGGGAAGTGGTGGAA+AGG - Chr1:55503966-55503985 MsG0180003042.01.T01:CDS 45.0%
! TTGGTGATACATGGGGAGAT+AGG - Chr1:55503812-55503831 MsG0180003042.01.T01:intron 45.0%
!! AGCACAAGGTGTTGTAAGAG+GGG + Chr1:55506342-55506361 None:intergenic 45.0%
!! CACTCCAACTTTTGGTGCAT+AGG + Chr1:55504232-55504251 None:intergenic 45.0%
!! GAGCACAAGGTGTTGTAAGA+GGG + Chr1:55506343-55506362 None:intergenic 45.0%
!! GGGTTCTTGTTGGTGATACA+TGG - Chr1:55503803-55503822 MsG0180003042.01.T01:intron 45.0%
!! TCATTGGTTCAGACTCCATG+TGG - Chr1:55503421-55503440 MsG0180003042.01.T01:intron 45.0%
!! TCCAACTTTTGGTGCATAGG+AGG + Chr1:55504229-55504248 None:intergenic 45.0%
!! TGAGCACAAGGTGTTGTAAG+AGG + Chr1:55506344-55506363 None:intergenic 45.0%
!!! ATAATTTCTTATTTTTTAAT+AGG - Chr1:55506963-55506982 MsG0180003042.01.T01:CDS 5.0%
ACCAAGTTTGACGAGAAGCG+TGG - Chr1:55505357-55505376 MsG0180003042.01.T01:intron 50.0%
ACCAGCAATCCCCGCAATAT+GGG + Chr1:55503869-55503888 None:intergenic 50.0%
ACTCTCAGGTCTTGCTAGCT+TGG + Chr1:55503593-55503612 None:intergenic 50.0%
AGGCAAGGTTGTGGTGAACA+TGG - Chr1:55507197-55507216 MsG0180003042.01.T01:CDS 50.0%
AGGCTACGATCACAGCCAAT+AGG - Chr1:55505633-55505652 MsG0180003042.01.T01:CDS 50.0%
ATCAACCTTGTCCATGGAGC+TGG + Chr1:55504465-55504484 None:intergenic 50.0%
ATGATCCAACAAGGAGTCGG+GGG - Chr1:55503782-55503801 MsG0180003042.01.T01:intron 50.0%
ATGCTTGCTCCAACACTCTC+AGG + Chr1:55503607-55503626 None:intergenic 50.0%
CAGCTTCCTTGTGACTCCAA+TGG - Chr1:55502830-55502849 MsG0180003042.01.T01:CDS 50.0%
CAGTCAGTTGCTCTTTCTGG+CGG - Chr1:55503907-55503926 MsG0180003042.01.T01:CDS 50.0%
CATACGCCATTGGAGTCACA+AGG + Chr1:55502839-55502858 None:intergenic 50.0%
CATTGGGCTGAGAACAACCA+GGG + Chr1:55502979-55502998 None:intergenic 50.0%
CCAACGAGAGGCTGAACAAA+TGG - Chr1:55507020-55507039 MsG0180003042.01.T01:CDS 50.0%
CCATTTGTTCAGCCTCTCGT+TGG + Chr1:55507023-55507042 None:intergenic 50.0%
CTAACAGTGACAGGTCTCTC+AGG + Chr1:55503163-55503182 None:intergenic 50.0%
CTTCTGCAAAGTCTGCCTTG+AGG - Chr1:55506367-55506386 MsG0180003042.01.T01:CDS 50.0%
GCCAGAAAGAGCAACTGACT+GGG + Chr1:55503908-55503927 None:intergenic 50.0%
GCTCCACAAAAGAGGAGGAA+AGG - Chr1:55507168-55507187 MsG0180003042.01.T01:CDS 50.0%
GGCTTCTTACTAAGTGGTGG+AGG + Chr1:55506072-55506091 None:intergenic 50.0%
GTGGGAAGGAGGAGTAAACA+TGG + Chr1:55502935-55502954 None:intergenic 50.0%
TCATTGGGCTGAGAACAACC+AGG + Chr1:55502980-55502999 None:intergenic 50.0%
TGACTCCAATGGCGTATGCA+TGG - Chr1:55502841-55502860 MsG0180003042.01.T01:CDS 50.0%
TGGAGCAAGCATTTCTACCG+AGG - Chr1:55503615-55503634 MsG0180003042.01.T01:CDS 50.0%
TTCAGGAGGAAAAGGGTTGC+TGG - Chr1:55506034-55506053 MsG0180003042.01.T01:CDS 50.0%
! AGGAAAAGGGTTGCTGGTTG+TGG - Chr1:55506040-55506059 MsG0180003042.01.T01:CDS 50.0%
! AGTCAGTTGCTCTTTCTGGC+GGG - Chr1:55503908-55503927 MsG0180003042.01.T01:CDS 50.0%
! AGTGGTGGAAAGGATACTGC+TGG - Chr1:55503976-55503995 MsG0180003042.01.T01:CDS 50.0%
! CCAAGTTTGACGAGAAGCGT+GGG - Chr1:55505358-55505377 MsG0180003042.01.T01:intron 50.0%
! CTAGCAAGACCTGAGAGTGT+TGG - Chr1:55503595-55503614 MsG0180003042.01.T01:CDS 50.0%
! TTATAGGTAGTGGTCGGGGA+CGG + Chr1:55504607-55504626 None:intergenic 50.0%
!!! TGCCTTGAGGGTGTCTTTTC+TGG - Chr1:55506380-55506399 MsG0180003042.01.T01:CDS 50.0%
ATGACGAAGACCACGGTGAG+TGG - Chr1:55503938-55503957 MsG0180003042.01.T01:CDS 55.0%
ATGAGCCAGCTCCATGGACA+AGG - Chr1:55504457-55504476 MsG0180003042.01.T01:intron 55.0%
CCAGCAATCCCCGCAATATG+GGG + Chr1:55503868-55503887 None:intergenic 55.0%
CCCACGCTTCTCGTCAAACT+TGG + Chr1:55505361-55505380 None:intergenic 55.0%
CGCCAGAAAGAGCAACTGAC+TGG + Chr1:55503909-55503928 None:intergenic 55.0%
GACCAGCAATCCCCGCAATA+TGG + Chr1:55503870-55503889 None:intergenic 55.0%
GCCCAGTCAGTTGCTCTTTC+TGG - Chr1:55503904-55503923 MsG0180003042.01.T01:CDS 55.0%
GGCCAGAAAAGACACCCTCA+AGG + Chr1:55506385-55506404 None:intergenic 55.0%
GTGACAATGAGCCAGCTCCA+TGG - Chr1:55504451-55504470 MsG0180003042.01.T01:intron 55.0%
TGATCCAACAAGGAGTCGGG+GGG - Chr1:55503783-55503802 MsG0180003042.01.T01:intron 55.0%
! TGCTAGCTTGGCCACACGAA+TGG + Chr1:55503581-55503600 None:intergenic 55.0%
AGAACCCCCCGACTCCTTGT+TGG + Chr1:55503790-55503809 None:intergenic 60.0%
AGGAGTCGGGGGGTTCTTGT+TGG - Chr1:55503793-55503812 MsG0180003042.01.T01:intron 60.0%
CCCCATATTGCGGGGATTGC+TGG - Chr1:55503865-55503884 MsG0180003042.01.T01:intron 60.0%
GCAGGCCATGCATACGCCAT+TGG + Chr1:55502849-55502868 None:intergenic 60.0%
GTTGGCGAACGCCATTCGTG+TGG - Chr1:55503567-55503586 MsG0180003042.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 55502809 55507272 55502809 ID=MsG0180003042.01;Name=MsG0180003042.01
Chr1 mRNA 55502809 55507272 55502809 ID=MsG0180003042.01.T01;Parent=MsG0180003042.01;Name=MsG0180003042.01.T01;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|8|0|644
Chr1 exon 55506904 55507272 55506904 ID=MsG0180003042.01.T01:exon:3049;Parent=MsG0180003042.01.T01
Chr1 exon 55505978 55506648 55505978 ID=MsG0180003042.01.T01:exon:3048;Parent=MsG0180003042.01.T01
Chr1 exon 55505776 55505875 55505776 ID=MsG0180003042.01.T01:exon:3047;Parent=MsG0180003042.01.T01
Chr1 exon 55505603 55505664 55505603 ID=MsG0180003042.01.T01:exon:3046;Parent=MsG0180003042.01.T01
Chr1 exon 55505390 55505492 55505390 ID=MsG0180003042.01.T01:exon:3045;Parent=MsG0180003042.01.T01
Chr1 exon 55503892 55504042 55503892 ID=MsG0180003042.01.T01:exon:3044;Parent=MsG0180003042.01.T01
Chr1 exon 55503588 55503778 55503588 ID=MsG0180003042.01.T01:exon:3043;Parent=MsG0180003042.01.T01
Chr1 exon 55502809 55503096 55502809 ID=MsG0180003042.01.T01:exon:3042;Parent=MsG0180003042.01.T01
Chr1 CDS 55506904 55507272 55506904 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55505978 55506648 55505978 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55505776 55505875 55505776 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55505603 55505664 55505603 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55505390 55505492 55505390 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55503892 55504042 55503892 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55503588 55503778 55503588 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Chr1 CDS 55502809 55503096 55502809 ID=MsG0180003042.01.T01:cds;Parent=MsG0180003042.01.T01
Gene Sequence

>MsG0180003042.01.T01

ATGGAACAAGAGCATAGCAAGCAGCTTCCTTGTGACTCCAATGGCGTATGCATGGCCTGCAAAGAGACGTATCGAGAATTTGAAACTCTCCTTTGCAAAACTTGCAATAAGCCATGGCATATGCCATGTTTACTCCTCCTTCCCACTACAATCTATGATTGGGAATGCCCTGGTTGTTCTCAGCCCAATGACATCAACAAAGTTGCCAGTCCACCTTTGTTTAGCGATGAAGAATTGGCGGAAATGTATGAAGAACTTGTTGCTGGATCCTCTACTGAAAACAACATTGGAAGCAATGTCGTGCTTGATATCTTCAATCGTAGAATTAATTGTTCATACTGCATGGAATTGCCTGAGAGACCTGTCACTACTCCATGTGGACACAATTTTTGCCTAAAGTGTTTTCTGAAATGGATTAAGGATGGAAATGGAAAACGCAATTGCTTGAATTGTAAAATGGTCATTCCAGCAAAGATGATAAAGAATCCAAAAATCAATTTTCAGTTGGCGAACGCCATTCGTGTGGCCAAGCTAGCAAGACCTGAGAGTGTTGGAGCAAGCATTTCTACCGAGGTTTCTCATATTGTTCACGATGATCAGCGTCCTGACACTTGTTACAAGACTGAGAGAACAAAGAAATCAGGAAAAGCTAATGTTGTTGGTGGGAAGATATTTGTGACGATTCCAATAGATCATTTTGGACCGATTATTGCTGAGAATGATCCAACAAGGAGTCGGGGGGTTCTTGTTGGTGATACATGGGGAGATAGGATGGAATGTAAGCAATGGGGTGCTCATTTTCCCCATATTGCGGGGATTGCTGGTCAAAGTAGTCAAGGTGCCCAGTCAGTTGCTCTTTCTGGCGGGTACATTGATGACGAAGACCACGGTGAGTGGTTCCTTTATACGGGAAGTGGTGGAAAGGATACTGCTGGTAACAAAGGTACCAATAAAAGGCAATCATCTGATCAACAATTTAAAGATAGGAATGAGGCGTTAAGACTCAGTTGCCAAAAAGGCTATCCTGTTCGTGTTATAAGGTCCCACAAGGAGAAACATTCCTCCTATGCACCAAAAGTTGGAGTGAGATATGACGGAGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAAAACAAGGTTATAAAGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTATTAGGAGACCGTCCCCGACCACTACCTATAATTCAGGAGTTTAAGGATGCAGTTGACATTACTGAAAGGAAAGGTGATCCATCATGGGACTTTGATGAGGAAAAGGGTTGCTGGTTGTGGAAGAAGCCTCCACCACTTAGTAAGAAGCCGATGAACATTGTCGATCCTATTGATCGAGTAAAAATAGAAGATGTTACGCCAGAAGAAAAAAAGGTGTCCTTCAAAATCAAGGATAGGTTATTGAAAGAGTTTGTTTGCAATATTTGTCACAACGTGTTAGCTTCCCCTCTTACAACACCTTGTGCTCACAACTTCTGCAAAGTCTGCCTTGAGGGTGTCTTTTCTGGCCAAAGTTATATTTCGAAGGGAGAACAAAAGAACATTATGAAATGCCCTACTTGTTCAACTAACATCGTTGATTATCTTCAAAATCCACAGGTTAATAAAGAAATAATGGATGTCATAGAATCACTCCAACGAGAGGCTGAACAAATGGAGAGTTTTGAAGAATCAATTGCTAAAAGTGATGAAATTCTCATGCTGGATGATAAGATAGAGGTTTCAAAACCTTGTGATTCAAGTGAAATATTTTTGGAGAAAATTAACGAGAATGATCTGAATGCTCCACAAAAGAGGAGGAAAGGTAATGAAGGCAAGGTTGTGGTGAACATGGAAGAAAATATTGATGAGGAGGAATTGGAAAGCAAAAAAATGGATTGCAATTAG
Protein sequence

>MsG0180003042.01.T01

MEQEHSKQLPCDSNGVCMACKETYREFETLLCKTCNKPWHMPCLLLLPTTIYDWECPGCSQPNDINKVASPPLFSDEELAEMYEELVAGSSTENNIGSNVVLDIFNRRINCSYCMELPERPVTTPCGHNFCLKCFLKWIKDGNGKRNCLNCKMVIPAKMIKNPKINFQLANAIRVAKLARPESVGASISTEVSHIVHDDQRPDTCYKTERTKKSGKANVVGGKIFVTIPIDHFGPIIAENDPTRSRGVLVGDTWGDRMECKQWGAHFPHIAGIAGQSSQGAQSVALSGGYIDDEDHGEWFLYTGSGGKDTAGNKGTNKRQSSDQQFKDRNEALRLSCQKGYPVRVIRSHKEKHSSYAPKVGVRYDGVYRIEKCWRKIGKQGYKVCRYLFVRCDNEPAPWTSDLLGDRPRPLPIIQEFKDAVDITERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNIVDPIDRVKIEDVTPEEKKVSFKIKDRLLKEFVCNICHNVLASPLTTPCAHNFCKVCLEGVFSGQSYISKGEQKNIMKCPTCSTNIVDYLQNPQVNKEIMDVIESLQREAEQMESFEESIAKSDEILMLDDKIEVSKPCDSSEIFLEKINENDLNAPQKRRKGNEGKVVVNMEENIDEEELESKKMDCN*