AlfalfaGEDB | MsG0180003065.01

M. sativa cultivar ZhongmuNo.1 / MsG0180003065.01

KEGG: K12603
GO: -
PFAM: PF03372

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003065.01.T01	XP_013467715.2	91.368	475	7	2	13	458	123	592	0	876

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003065.01.T01	Q9M2F8	70.149	469	102	5	21	451	128	596	0	637

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
MsG0180003065.01	MsG0280010983.01	PPI
MsG0380012103.01	MsG0180003065.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003065.01.T01	MTR_1g054605	90.171	468	17	1	18	456	33	500	0.0	803
MsG0180003065.01.T01	MTR_1g054535	91.480	446	9	1	42	458	110	555	0.0	799
MsG0180003065.01.T01	MTR_1g054535	91.480	446	9	1	42	458	147	592	0.0	798
MsG0180003065.01.T01	MTR_1g054545	84.110	472	15	2	18	458	324	766	0.0	744
MsG0180003065.01.T01	MTR_1g054605	84.188	468	16	2	18	456	33	471	0.0	732
MsG0180003065.01.T01	MTR_7g107240	72.939	473	62	4	16	455	126	565	0.0	625
MsG0180003065.01.T01	MTR_6g084560	29.765	383	172	10	138	453	59	411	4.25e-34	133
MsG0180003065.01.T01	MTR_5g026280	27.518	407	192	14	109	453	5	370	4.19e-30	120
MsG0180003065.01.T01	MTR_5g026280	26.512	430	213	14	87	453	1	390	4.28e-30	120
MsG0180003065.01.T01	MTR_8g103870	27.481	393	183	13	129	457	46	400	6.35e-27	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180003065.01.T01	AT3G58580	70.149	469	102	5	21	451	128	596	0.0	637
MsG0180003065.01.T01	AT3G58560	69.623	451	97	5	40	451	143	592	0.0	590
MsG0180003065.01.T01	AT3G18500	28.571	350	173	10	139	449	109	420	3.68e-30	122
MsG0180003065.01.T01	AT3G18500	28.412	359	181	11	139	449	109	439	2.20e-29	120
MsG0180003065.01.T01	AT3G18500	28.099	363	181	11	139	449	109	443	2.97e-29	119
MsG0180003065.01.T01	AT3G18500	27.493	371	172	10	139	449	109	442	1.63e-28	117
MsG0180003065.01.T01	AT1G73875	28.533	375	171	10	142	449	103	447	7.82e-28	115
MsG0180003065.01.T01	AT1G31500	26.410	390	197	12	109	449	5	353	4.67e-25	106
MsG0180003065.01.T01	AT1G31500	26.410	390	197	12	109	449	30	378	7.87e-25	105
MsG0180003065.01.T01	AT1G31500	26.410	390	197	12	109	449	35	383	8.96e-25	105

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Find 154 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTGAAGCGAAGGT+TGG	0.456723	1:-56084022	None:intergenic
AAAGACATGGTTTGTTGACT+AGG	0.516376	1:-56084099	None:intergenic
AAAGATTTGAAGCGAAGGTT+GGG	0.483626	1:-56084021	None:intergenic
AAAGTGCTAGCTTGTCCCAC+AGG	0.545273	1:-56079906	None:intergenic
AAATCAAGGGAAAGTGTCTT+TGG	0.322230	1:-56079636	None:intergenic
AACAAAGTAGTAGAATTTGA+GGG	0.552282	1:+56084160	MsG0180003065.01.T01:three_prime_UTR
AACCTCATATTTCTTCACAT+GGG	0.614760	1:-56080861	None:intergenic
AAGAATTCACCATACCTTCC+TGG	0.432354	1:-56082026	None:intergenic
AAGGGAAAGTGTCTTTGGTA+TGG	0.466816	1:-56079631	None:intergenic
AAGTCTCCACAAACCAACAT+TGG	0.599413	1:-56081993	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACAAATATGGAAGGGA+AGG	-	Chr1:56082787-56082806	None:intergenic	30.0%
AACCTCATATTTCTTCACAT+GGG	-	Chr1:56080864-56080883	None:intergenic	30.0%
AATACAAATATGGAAGGGAA+GGG	-	Chr1:56082786-56082805	None:intergenic	30.0%
AATATATTACCAGTGGCAAT+TGG	-	Chr1:56082231-56082250	None:intergenic	30.0%
AATCAACTAGTTGACAATCT+TGG	+	Chr1:56081186-56081205	MsG0180003065.01.T01:CDS	30.0%
AATGTTAACCTGATTGTTGT+GGG	+	Chr1:56080774-56080793	MsG0180003065.01.T01:intron	30.0%
AATTTACCATTGGTCATATG+TGG	+	Chr1:56082344-56082363	MsG0180003065.01.T01:intron	30.0%
ACAACACAGATTCATCAAAA+CGG	-	Chr1:56080448-56080467	None:intergenic	30.0%
ACTACACAACAAAATGTACA+AGG	-	Chr1:56082994-56083013	None:intergenic	30.0%
ACTGGAAGTTATTGTAAGAA+CGG	+	Chr1:56083867-56083886	MsG0180003065.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	56079624	56084412	56079624	ID=MsG0180003065.01;Name=MsG0180003065.01
Chr1	mRNA	56079624	56084412	56079624	ID=MsG0180003065.01.T01;Parent=MsG0180003065.01;Name=MsG0180003065.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0.88\|0.9\|1\|0.88\|0.7\|10\|590\|458
Chr1	exon	56079624	56080193	56079624	ID=MsG0180003065.01.T01:exon:48240;Parent=MsG0180003065.01.T01
Chr1	exon	56080803	56080880	56080803	ID=MsG0180003065.01.T01:exon:48241;Parent=MsG0180003065.01.T01
Chr1	exon	56080967	56081053	56080967	ID=MsG0180003065.01.T01:exon:48242;Parent=MsG0180003065.01.T01
Chr1	exon	56081144	56081230	56081144	ID=MsG0180003065.01.T01:exon:48243;Parent=MsG0180003065.01.T01
Chr1	exon	56081807	56081860	56081807	ID=MsG0180003065.01.T01:exon:48244;Parent=MsG0180003065.01.T01
Chr1	exon	56081942	56082033	56081942	ID=MsG0180003065.01.T01:exon:48245;Parent=MsG0180003065.01.T01
Chr1	exon	56082126	56082240	56082126	ID=MsG0180003065.01.T01:exon:48246;Parent=MsG0180003065.01.T01
Chr1	exon	56082380	56082524	56082380	ID=MsG0180003065.01.T01:exon:48247;Parent=MsG0180003065.01.T01
Chr1	exon	56082610	56082766	56082610	ID=MsG0180003065.01.T01:exon:48248;Parent=MsG0180003065.01.T01
Chr1	exon	56083831	56084412	56083831	ID=MsG0180003065.01.T01:exon:48249;Parent=MsG0180003065.01.T01
Chr1	CDS	56079624	56080193	56079624	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56080803	56080880	56080803	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56080967	56081053	56080967	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56081144	56081230	56081144	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56081807	56081860	56081807	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56081942	56082033	56081942	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56082126	56082240	56082126	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56082380	56082524	56082380	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	CDS	56082610	56082758	56082610	ID=MsG0180003065.01.T01:cds;Parent=MsG0180003065.01.T01
Chr1	three_prime_UTR	56082759	56082766	56082759	ID=MsG0180003065.01.T01:three_prime_utr;Parent=MsG0180003065.01.T01
Chr1	three_prime_UTR	56083831	56084412	56083831	ID=MsG0180003065.01.T01:three_prime_utr;Parent=MsG0180003065.01.T01

Gene Sequence

>MsG0180003065.01.T01

ATGACTCCCATACCAAAGACACTTTCCCTTGATTTGAAGGATGAGGTATTTGAGTGCTTTAATAGTTCTAATGCTGGGATAACCAATTCCAATTTATCTGGCTCTGCATCAAGTGCTAGTTTGACGAATGGGTATGCAGCTCCTATGTATCCAGCTGGTATCAGAAATGACAATGAAACTTGGTTCGAAGTTGGACGATCCAAGACTTATACCCCAACTGCTGATGACATTGGTCATGTCCTTAAGTTTGAATGTTCTGTAGTTGATGCAGTGACAAAATCACCTGTGGGACAAGCTAGCACTTTACAAACTAATAGGGTCATTCCTGCTCCTTCACCAATTCCACGCCGAATTATACGTGTTGATGGGATGGGGCATTTAGATCTAGATAGGCGTATGACATCTTCAGGAACTTTTACTGCTCTGTCATACAATGTCTTATCTGAAACATGTGCCTCAAATGATCTCTATAGCTACTGCCCTCCGTGGGCACTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTATGCTGCAGACATTATTTGCCTTCAGGAGGTATCCAGTGGCAACACAATTGATGGTTGTGCGACATTTTTTCGCAGAGACAAATTTTCCCATGTGAAGAAATATGAGGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGAGGCCATGATTCCAACTGCTCAGAAGAAAACTGCCTTGAATCGGCTGGTCAAGGATAATGTTGCACTAATAGTTGTTCTAGAAACGAAAGTTAACAATCAACTAGTTGACAATCTTGGGAAAAGACAACTTCTTTGTGTGGCAAATACACATGTTCATGTTCAGCAAGATTTGAAAGATGTCAAGCTCTGGCAGGTGCATACTCTATTAAAGGGGTTGGAAAAAATAGCTACAAGTGCGGACATTCCAATGTTGGTTTGTGGAGACTTTAATTCTGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGACCCGTCGCATCCTGATTTAACAGTTGACCCACTTAATATTTTACGCCCTCATAGCAAGTTGGTTCACCAATTGCCACTGGTCAGTGCATACTCGTCTTTTGCAAGAACAGCAGGTCTTGCATTCGAGCAGCATAAAAGGAGATTGGATGGCGGCACAAATGAACCTTTGTTCACAAGCGTTACTAGAGATTTTGTTGGCACTCTAGACTACATATTTTACACAGCGGATTCATTAGTTGTGGAGTCATTATTGGAGTTATTGGATGAAGAGAATTTGAGAAAGGACACTGCACTTCCTTCACCTGGATGGTCCTCAGATCATATAGCACTCCTAGCCGAGTTCCGCTGCTGCAAAAATAAGTCTACGCATTGA

Protein sequence

>MsG0180003065.01.T01

MTPIPKTLSLDLKDEVFECFNSSNAGITNSNLSGSASSASLTNGYAAPMYPAGIRNDNETWFEVGRSKTYTPTADDIGHVLKFECSVVDAVTKSPVGQASTLQTNRVIPAPSPIPRRIIRVDGMGHLDLDRRMTSSGTFTALSYNVLSETCASNDLYSYCPPWALSWPYRRQNLLREIVGYAADIICLQEVSSGNTIDGCATFFRRDKFSHVKKYEVEFNKAAQSLTEAMIPTAQKKTALNRLVKDNVALIVVLETKVNNQLVDNLGKRQLLCVANTHVHVQQDLKDVKLWQVHTLLKGLEKIATSADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLTVDPLNILRPHSKLVHQLPLVSAYSSFARTAGLAFEQHKRRLDGGTNEPLFTSVTRDFVGTLDYIFYTADSLVVESLLELLDEENLRKDTALPSPGWSSDHIALLAEFRCCKNKSTH*