Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003314.01.T01 | KEH41968.1 | 96.371 | 248 | 5 | 1 | 1 | 248 | 1 | 244 | 2.44E-178 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003314.01.T01 | Q8RYD3 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 1.27E-56 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003314.01.T01 | A0A072VKM7 | 96.371 | 248 | 5 | 1 | 1 | 248 | 1 | 244 | 1.17e-178 | 504 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180003314.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003314.01 | MsG0580027615.01 | 0.805606 | 1.231027e-49 | 6.540798e-47 |
| MsG0180003314.01 | MsG0880043867.01 | 0.815224 | 1.031707e-51 | 7.070924e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003314.01.T01 | MTR_1g058350 | 96.371 | 248 | 5 | 1 | 1 | 248 | 1 | 244 | 0.0 | 504 |
| MsG0180003314.01.T01 | MTR_7g105370 | 54.113 | 231 | 72 | 5 | 6 | 236 | 11 | 207 | 2.37e-62 | 198 |
| MsG0180003314.01.T01 | MTR_8g023990 | 70.796 | 113 | 29 | 2 | 75 | 185 | 167 | 277 | 2.73e-48 | 167 |
| MsG0180003314.01.T01 | MTR_5g053920 | 66.087 | 115 | 33 | 1 | 76 | 184 | 191 | 305 | 2.06e-45 | 157 |
| MsG0180003314.01.T01 | MTR_7g117455 | 69.725 | 109 | 29 | 2 | 79 | 185 | 117 | 223 | 2.38e-45 | 158 |
| MsG0180003314.01.T01 | MTR_1g093600 | 61.157 | 121 | 36 | 2 | 76 | 185 | 188 | 308 | 6.34e-41 | 145 |
| MsG0180003314.01.T01 | MTR_1g116920 | 50.467 | 107 | 43 | 2 | 68 | 169 | 145 | 246 | 2.18e-28 | 110 |
| MsG0180003314.01.T01 | MTR_7g073240 | 38.129 | 139 | 66 | 6 | 54 | 185 | 98 | 223 | 2.30e-16 | 78.2 |
| MsG0180003314.01.T01 | MTR_5g075410 | 36.296 | 135 | 65 | 6 | 58 | 185 | 302 | 422 | 3.58e-15 | 75.5 |
| MsG0180003314.01.T01 | MTR_4g028130 | 34.815 | 135 | 68 | 6 | 58 | 185 | 295 | 416 | 3.64e-15 | 75.5 |
| MsG0180003314.01.T01 | MTR_4g028130 | 35.338 | 133 | 66 | 6 | 58 | 183 | 295 | 414 | 3.93e-15 | 75.5 |
| MsG0180003314.01.T01 | MTR_4g028130 | 35.338 | 133 | 66 | 6 | 58 | 183 | 295 | 414 | 4.23e-15 | 75.5 |
| MsG0180003314.01.T01 | MTR_3g467380 | 35.758 | 165 | 81 | 9 | 58 | 211 | 319 | 469 | 1.82e-14 | 73.6 |
| MsG0180003314.01.T01 | MTR_2g011940 | 36.667 | 120 | 62 | 5 | 66 | 183 | 336 | 443 | 2.30e-14 | 73.2 |
| MsG0180003314.01.T01 | MTR_2g011940 | 36.066 | 122 | 64 | 5 | 66 | 185 | 345 | 454 | 3.35e-14 | 72.8 |
| MsG0180003314.01.T01 | MTR_2g011940 | 36.066 | 122 | 64 | 5 | 66 | 185 | 345 | 454 | 3.71e-14 | 72.4 |
| MsG0180003314.01.T01 | MTR_8g101360 | 38.053 | 113 | 64 | 3 | 71 | 183 | 129 | 235 | 1.53e-12 | 67.8 |
| MsG0180003314.01.T01 | MTR_1g094960 | 27.586 | 203 | 125 | 5 | 75 | 258 | 113 | 312 | 3.35e-12 | 66.6 |
| MsG0180003314.01.T01 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 75 | 208 | 103 | 238 | 3.98e-12 | 66.6 |
| MsG0180003314.01.T01 | MTR_4g058930 | 32.432 | 148 | 83 | 4 | 75 | 217 | 104 | 239 | 5.01e-12 | 66.2 |
| MsG0180003314.01.T01 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 75 | 208 | 103 | 238 | 5.35e-12 | 66.2 |
| MsG0180003314.01.T01 | MTR_4g058930 | 32.432 | 148 | 83 | 4 | 75 | 217 | 104 | 239 | 5.38e-12 | 66.2 |
| MsG0180003314.01.T01 | MTR_2g094570 | 33.813 | 139 | 84 | 3 | 75 | 208 | 159 | 294 | 5.44e-12 | 66.2 |
| MsG0180003314.01.T01 | MTR_3g073420 | 35.897 | 117 | 69 | 4 | 69 | 183 | 105 | 217 | 1.02e-11 | 65.1 |
| MsG0180003314.01.T01 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 56 | 240 | 144 | 322 | 1.23e-11 | 65.1 |
| MsG0180003314.01.T01 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 56 | 240 | 144 | 322 | 1.25e-11 | 65.1 |
| MsG0180003314.01.T01 | MTR_2g093740 | 29.630 | 162 | 108 | 3 | 79 | 240 | 167 | 322 | 1.27e-11 | 65.1 |
| MsG0180003314.01.T01 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 56 | 240 | 14 | 192 | 1.53e-11 | 64.7 |
| MsG0180003314.01.T01 | MTR_2g093740 | 28.649 | 185 | 126 | 3 | 56 | 240 | 14 | 192 | 1.58e-11 | 64.7 |
| MsG0180003314.01.T01 | MTR_4g060460 | 30.178 | 169 | 112 | 3 | 72 | 240 | 158 | 320 | 1.86e-11 | 64.7 |
| MsG0180003314.01.T01 | MTR_4g060460 | 30.178 | 169 | 112 | 3 | 72 | 240 | 158 | 320 | 1.88e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003314.01.T01 | AT3G11580 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 4.69e-58 | 185 |
| MsG0180003314.01.T01 | AT3G11580 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 4.69e-58 | 185 |
| MsG0180003314.01.T01 | AT3G11580 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 4.69e-58 | 185 |
| MsG0180003314.01.T01 | AT3G11580 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 1.30e-57 | 185 |
| MsG0180003314.01.T01 | AT5G06250 | 70.000 | 130 | 31 | 1 | 73 | 194 | 39 | 168 | 2.02e-57 | 185 |
| MsG0180003314.01.T01 | AT5G06250 | 75.000 | 120 | 22 | 1 | 73 | 184 | 39 | 158 | 2.13e-57 | 185 |
| MsG0180003314.01.T01 | AT5G06250 | 75.000 | 120 | 22 | 1 | 73 | 184 | 39 | 158 | 2.21e-57 | 185 |
| MsG0180003314.01.T01 | AT5G06250 | 70.000 | 130 | 31 | 1 | 73 | 194 | 39 | 168 | 3.50e-57 | 184 |
| MsG0180003314.01.T01 | AT5G06250 | 70.000 | 130 | 31 | 1 | 73 | 194 | 39 | 168 | 4.86e-57 | 184 |
| MsG0180003314.01.T01 | AT3G11580 | 76.471 | 119 | 19 | 2 | 75 | 184 | 24 | 142 | 1.57e-56 | 186 |
| MsG0180003314.01.T01 | AT2G36080 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 6.02e-56 | 178 |
| MsG0180003314.01.T01 | AT2G36080 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 6.02e-56 | 178 |
| MsG0180003314.01.T01 | AT2G36080 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 1.67e-55 | 179 |
| MsG0180003314.01.T01 | AT2G36080 | 78.571 | 112 | 23 | 1 | 74 | 184 | 32 | 143 | 1.87e-55 | 179 |
| MsG0180003314.01.T01 | AT3G61970 | 68.468 | 111 | 34 | 1 | 75 | 184 | 18 | 128 | 9.94e-50 | 166 |
| MsG0180003314.01.T01 | AT2G46870 | 69.912 | 113 | 29 | 2 | 75 | 184 | 30 | 140 | 6.67e-48 | 161 |
| MsG0180003314.01.T01 | AT1G68840 | 63.934 | 122 | 44 | 0 | 65 | 186 | 173 | 294 | 9.12e-47 | 160 |
| MsG0180003314.01.T01 | AT1G68840 | 63.934 | 122 | 44 | 0 | 65 | 186 | 173 | 294 | 9.12e-47 | 160 |
| MsG0180003314.01.T01 | AT1G13260 | 66.087 | 115 | 38 | 1 | 77 | 191 | 185 | 298 | 1.83e-46 | 159 |
| MsG0180003314.01.T01 | AT3G25730 | 62.097 | 124 | 45 | 2 | 77 | 198 | 180 | 303 | 2.37e-45 | 155 |
| MsG0180003314.01.T01 | AT1G01030 | 62.185 | 119 | 40 | 2 | 69 | 184 | 45 | 161 | 7.83e-45 | 154 |
| MsG0180003314.01.T01 | AT1G01030 | 62.185 | 119 | 40 | 2 | 69 | 184 | 45 | 161 | 1.02e-44 | 154 |
| MsG0180003314.01.T01 | AT1G25560 | 59.375 | 128 | 46 | 1 | 76 | 197 | 191 | 318 | 5.74e-44 | 152 |
| MsG0180003314.01.T01 | AT4G01500 | 53.906 | 128 | 46 | 2 | 67 | 185 | 23 | 146 | 9.14e-38 | 135 |
| MsG0180003314.01.T01 | AT1G50680 | 50.000 | 98 | 40 | 1 | 79 | 167 | 156 | 253 | 1.09e-25 | 103 |
| MsG0180003314.01.T01 | AT1G51120 | 49.474 | 95 | 42 | 1 | 79 | 167 | 177 | 271 | 4.41e-25 | 102 |
| MsG0180003314.01.T01 | AT2G30470 | 35.664 | 143 | 79 | 6 | 79 | 215 | 294 | 429 | 1.13e-15 | 77.0 |
| MsG0180003314.01.T01 | AT4G32010 | 31.944 | 144 | 89 | 5 | 79 | 220 | 285 | 421 | 1.97e-14 | 73.6 |
| MsG0180003314.01.T01 | AT4G32010 | 31.944 | 144 | 89 | 5 | 79 | 220 | 281 | 417 | 2.00e-14 | 73.6 |
| MsG0180003314.01.T01 | AT1G35240 | 33.793 | 145 | 87 | 4 | 64 | 201 | 105 | 247 | 2.21e-12 | 67.4 |
| MsG0180003314.01.T01 | AT1G77850 | 36.283 | 113 | 65 | 3 | 73 | 183 | 112 | 219 | 2.74e-12 | 67.0 |
| MsG0180003314.01.T01 | AT1G77850 | 36.283 | 113 | 65 | 3 | 73 | 183 | 112 | 219 | 3.09e-12 | 66.6 |
| MsG0180003314.01.T01 | AT1G35520 | 33.103 | 145 | 88 | 4 | 64 | 201 | 105 | 247 | 6.34e-12 | 65.9 |
| MsG0180003314.01.T01 | AT1G34310 | 31.944 | 144 | 91 | 3 | 64 | 201 | 105 | 247 | 1.19e-11 | 65.1 |
| MsG0180003314.01.T01 | AT5G60450 | 31.288 | 163 | 103 | 4 | 79 | 240 | 152 | 306 | 7.84e-11 | 62.8 |
| MsG0180003314.01.T01 | AT2G33860 | 30.000 | 160 | 106 | 3 | 79 | 238 | 158 | 311 | 8.56e-11 | 62.4 |
| MsG0180003314.01.T01 | AT5G60450 | 31.288 | 163 | 103 | 4 | 79 | 240 | 176 | 330 | 8.75e-11 | 62.4 |
Find 51 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAGTCGAACCAACTTCT+TGG | 0.317183 | 1:+60477747 | MsG0180003314.01.T01:CDS |
| GGCGTTTCCGTTACTCATAT+TGG | 0.359426 | 1:+60478065 | MsG0180003314.01.T01:CDS |
| CCTACGTCAGAAGGTGTTAA+GGG | 0.377142 | 1:-60477920 | None:intergenic |
| GGTAAGAATGAGGTTGTTAA+TGG | 0.377492 | 1:+60478295 | MsG0180003314.01.T01:CDS |
| TCCTACGTCAGAAGGTGTTA+AGG | 0.388480 | 1:-60477921 | None:intergenic |
| CAAAGCTATGTTCTAACAAA+AGG | 0.431965 | 1:+60478097 | MsG0180003314.01.T01:CDS |
| TGATGATGATGCGCAGGATA+AGG | 0.435593 | 1:-60478355 | None:intergenic |
| AATAAAACCCGAAGACGAAA+AGG | 0.463997 | 1:+60477880 | MsG0180003314.01.T01:CDS |
| AAAGACAAACGACTCGATGC+TGG | 0.484361 | 1:+60478136 | MsG0180003314.01.T01:CDS |
| TCAACTGGAGGAGGAGGAGT+GGG | 0.485693 | 1:+60478209 | MsG0180003314.01.T01:CDS |
| AATGAGGTTGTTAATGGTGT+AGG | 0.496825 | 1:+60478301 | MsG0180003314.01.T01:CDS |
| ACCATGGAGGTTGGTGGTGA+TGG | 0.501172 | 1:-60477775 | None:intergenic |
| ATCAACTGGAGGAGGAGGAG+TGG | 0.505623 | 1:+60478208 | MsG0180003314.01.T01:CDS |
| AGCAGAGGGGTGGGACATCA+TGG | 0.518191 | 1:+60478253 | MsG0180003314.01.T01:CDS |
| CATCATGGTAAAGGTAGTGA+TGG | 0.524393 | 1:+60478268 | MsG0180003314.01.T01:CDS |
| GAGGAGTGGGGATGATCAGT+CGG | 0.525500 | 1:+60478222 | MsG0180003314.01.T01:CDS |
| GCTATGTTCTAACAAAAGGT+TGG | 0.532394 | 1:+60478101 | MsG0180003314.01.T01:CDS |
| TAGTAAAAGTCCTTTGCACT+CGG | 0.550197 | 1:-60478014 | None:intergenic |
| ATGGTGTAGGGTGGTCCAGA+GGG | 0.553370 | 1:+60478314 | MsG0180003314.01.T01:CDS |
| AAGATGAGTCAGGGAAGTGT+TGG | 0.556819 | 1:+60478044 | MsG0180003314.01.T01:CDS |
| TCCATCACCACCAACCTCCA+TGG | 0.565376 | 1:+60477774 | MsG0180003314.01.T01:CDS |
| AATGGTGTAGGGTGGTCCAG+AGG | 0.566906 | 1:+60478313 | MsG0180003314.01.T01:CDS |
| GCGGAGTCTGCTCCGCCGAG+TGG | 0.567487 | 1:-60477992 | None:intergenic |
| CATGATCAATGTCTTCATGC+AGG | 0.570998 | 1:+60478394 | MsG0180003314.01.T01:CDS |
| GCAGACTCCGCCGAGTGCAA+AGG | 0.576404 | 1:+60478004 | MsG0180003314.01.T01:CDS |
| TACTGTTCCAATATGAGTAA+CGG | 0.578342 | 1:-60478072 | None:intergenic |
| ATGCGCAGAATAGAACCCTC+TGG | 0.580439 | 1:-60478329 | None:intergenic |
| GGCGTATGTTAGCAGAGGGG+TGG | 0.580643 | 1:+60478243 | MsG0180003314.01.T01:CDS |
| TGATGGAGAGACCAAGAAGT+TGG | 0.584201 | 1:-60477758 | None:intergenic |
| GCGTATGTTAGCAGAGGGGT+GGG | 0.587165 | 1:+60478244 | MsG0180003314.01.T01:CDS |
| GGGGTGGGACATCATGGTAA+AGG | 0.589571 | 1:+60478259 | MsG0180003314.01.T01:CDS |
| AGACATTGATCATGTTGGTA+TGG | 0.589887 | 1:-60478385 | None:intergenic |
| TTTCAGAAACATCACTCTGG+TGG | 0.596606 | 1:+60477681 | MsG0180003314.01.T01:CDS |
| ATGAGGTTGTTAATGGTGTA+GGG | 0.597680 | 1:+60478302 | MsG0180003314.01.T01:CDS |
| GAGAATTGAACCATGGAGGT+TGG | 0.598304 | 1:-60477784 | None:intergenic |
| AAGACTTGATGATGATGCGC+AGG | 0.600336 | 1:-60478361 | None:intergenic |
| ATCATGGTAAAGGTAGTGAT+GGG | 0.605307 | 1:+60478269 | MsG0180003314.01.T01:CDS |
| TGGATTTGAGAATTGAACCA+TGG | 0.606350 | 1:-60477791 | None:intergenic |
| TGATGGGAATGGTAAGAATG+AGG | 0.609090 | 1:+60478285 | MsG0180003314.01.T01:CDS |
| CATGAAGACATTGATCATGT+TGG | 0.609605 | 1:-60478390 | None:intergenic |
| ATCTTTCAGAAACATCACTC+TGG | 0.613066 | 1:+60477678 | MsG0180003314.01.T01:CDS |
| GGTAAAGGTAGTGATGGGAA+TGG | 0.616121 | 1:+60478274 | MsG0180003314.01.T01:CDS |
| AGTCGGCGTATGTTAGCAGA+GGG | 0.627715 | 1:+60478239 | MsG0180003314.01.T01:CDS |
| CAGTCGGCGTATGTTAGCAG+AGG | 0.631740 | 1:+60478238 | MsG0180003314.01.T01:CDS |
| CCCTTAACACCTTCTGACGT+AGG | 0.645250 | 1:+60477920 | MsG0180003314.01.T01:CDS |
| TAAAAGTCCTTTGCACTCGG+CGG | 0.651002 | 1:-60478011 | None:intergenic |
| CAACTGGAGGAGGAGGAGTG+GGG | 0.652199 | 1:+60478210 | MsG0180003314.01.T01:CDS |
| AATTGAACCATGGAGGTTGG+TGG | 0.658505 | 1:-60477781 | None:intergenic |
| ATTTGAGAATTGAACCATGG+AGG | 0.715955 | 1:-60477788 | None:intergenic |
| AGGTTGTTAATGGTGTAGGG+TGG | 0.756848 | 1:+60478305 | MsG0180003314.01.T01:CDS |
| GTCGGCGTATGTTAGCAGAG+GGG | 0.766314 | 1:+60478240 | MsG0180003314.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCAGCGTATTGTTTT+GGG | - | Chr1:60477967-60477986 | None:intergenic | 25.0% |
| !!! | TATTTTTCAGCGTATTGTTT+TGG | - | Chr1:60477968-60477987 | None:intergenic | 25.0% |
| CAAAGCTATGTTCTAACAAA+AGG | + | Chr1:60478097-60478116 | MsG0180003314.01.T01:CDS | 30.0% | |
| TACTGTTCCAATATGAGTAA+CGG | - | Chr1:60478075-60478094 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGAGGTTGTAATG+AGG | - | Chr1:60477827-60477846 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGGATAACAAGA+CGG | - | Chr1:60477955-60477974 | None:intergenic | 30.0% |
| !!! | TAAGTTTTGAAGATGAGTCA+GGG | + | Chr1:60478035-60478054 | MsG0180003314.01.T01:CDS | 30.0% |
| AATAAAACCCGAAGACGAAA+AGG | + | Chr1:60477880-60477899 | MsG0180003314.01.T01:CDS | 35.0% | |
| AATGAGGTTGTTAATGGTGT+AGG | + | Chr1:60478301-60478320 | MsG0180003314.01.T01:CDS | 35.0% | |
| AGACATTGATCATGTTGGTA+TGG | - | Chr1:60478388-60478407 | None:intergenic | 35.0% | |
| ATCATGGTAAAGGTAGTGAT+GGG | + | Chr1:60478269-60478288 | MsG0180003314.01.T01:CDS | 35.0% | |
| ATCTTTCAGAAACATCACTC+TGG | + | Chr1:60477678-60477697 | MsG0180003314.01.T01:CDS | 35.0% | |
| ATGAGGTTGTTAATGGTGTA+GGG | + | Chr1:60478302-60478321 | MsG0180003314.01.T01:CDS | 35.0% | |
| ATTTGAGAATTGAACCATGG+AGG | - | Chr1:60477791-60477810 | None:intergenic | 35.0% | |
| CATGAAGACATTGATCATGT+TGG | - | Chr1:60478393-60478412 | None:intergenic | 35.0% | |
| GCTATGTTCTAACAAAAGGT+TGG | + | Chr1:60478101-60478120 | MsG0180003314.01.T01:CDS | 35.0% | |
| GCTGAAAAATACTTTCCACT+CGG | + | Chr1:60477977-60477996 | MsG0180003314.01.T01:CDS | 35.0% | |
| GGTAAGAATGAGGTTGTTAA+TGG | + | Chr1:60478295-60478314 | MsG0180003314.01.T01:CDS | 35.0% | |
| TAGTAAAAGTCCTTTGCACT+CGG | - | Chr1:60478017-60478036 | None:intergenic | 35.0% | |
| TATTAGTCGAACCAACTTCT+TGG | + | Chr1:60477747-60477766 | MsG0180003314.01.T01:CDS | 35.0% | |
| TGGATTTGAGAATTGAACCA+TGG | - | Chr1:60477794-60477813 | None:intergenic | 35.0% | |
| ! | AGAGACTTTTTATCAACTGG+AGG | + | Chr1:60478197-60478216 | MsG0180003314.01.T01:CDS | 35.0% |
| ! | GTCAGAGACTTTTTATCAAC+TGG | + | Chr1:60478194-60478213 | MsG0180003314.01.T01:CDS | 35.0% |
| ! | TGTAATGAGGTGAGTTTTCA+TGG | - | Chr1:60477814-60477833 | None:intergenic | 35.0% |
| !! | ATTGATTCCTTTTCGTCTTC+GGG | - | Chr1:60477890-60477909 | None:intergenic | 35.0% |
| !! | CTTCATCTTCGATGTTTTTG+AGG | - | Chr1:60477838-60477857 | None:intergenic | 35.0% |
| !!! | CATTGATTCCTTTTCGTCTT+CGG | - | Chr1:60477891-60477910 | None:intergenic | 35.0% |
| !!! | CTAAGTTTTGAAGATGAGTC+AGG | + | Chr1:60478034-60478053 | MsG0180003314.01.T01:CDS | 35.0% |
| !!! | TTCGTCTTCGGGTTTTATTA+CGG | - | Chr1:60477879-60477898 | None:intergenic | 35.0% |
| CATCATGGTAAAGGTAGTGA+TGG | + | Chr1:60478268-60478287 | MsG0180003314.01.T01:CDS | 40.0% | |
| CATGATCAATGTCTTCATGC+AGG | + | Chr1:60478394-60478413 | MsG0180003314.01.T01:CDS | 40.0% | |
| GAAAAATACTTTCCACTCGG+CGG | + | Chr1:60477980-60477999 | MsG0180003314.01.T01:CDS | 40.0% | |
| TGATGGGAATGGTAAGAATG+AGG | + | Chr1:60478285-60478304 | MsG0180003314.01.T01:CDS | 40.0% | |
| TTTCAGAAACATCACTCTGG+TGG | + | Chr1:60477681-60477700 | MsG0180003314.01.T01:CDS | 40.0% | |
| ! | GACTTTTTATCAACTGGAGG+AGG | + | Chr1:60478200-60478219 | MsG0180003314.01.T01:CDS | 40.0% |
| ! | TTGAGTTTTCCTACGTCAGA+AGG | - | Chr1:60477932-60477951 | None:intergenic | 40.0% |
| ! | TTTTTATCAACTGGAGGAGG+AGG | + | Chr1:60478203-60478222 | MsG0180003314.01.T01:CDS | 40.0% |
| AAAGACAAACGACTCGATGC+TGG | + | Chr1:60478136-60478155 | MsG0180003314.01.T01:CDS | 45.0% | |
| AATTGAACCATGGAGGTTGG+TGG | - | Chr1:60477784-60477803 | None:intergenic | 45.0% | |
| AGGTTGTTAATGGTGTAGGG+TGG | + | Chr1:60478305-60478324 | MsG0180003314.01.T01:CDS | 45.0% | |
| GAGAATTGAACCATGGAGGT+TGG | - | Chr1:60477787-60477806 | None:intergenic | 45.0% | |
| GGCGTTTCCGTTACTCATAT+TGG | + | Chr1:60478065-60478084 | MsG0180003314.01.T01:CDS | 45.0% | |
| TAAAAGTCCTTTGCACTCGG+CGG | - | Chr1:60478014-60478033 | None:intergenic | 45.0% | |
| TGATGGAGAGACCAAGAAGT+TGG | - | Chr1:60477761-60477780 | None:intergenic | 45.0% | |
| ! | AAGATGAGTCAGGGAAGTGT+TGG | + | Chr1:60478044-60478063 | MsG0180003314.01.T01:CDS | 45.0% |
| ! | GGTAAAGGTAGTGATGGGAA+TGG | + | Chr1:60478274-60478293 | MsG0180003314.01.T01:CDS | 45.0% |
| ! | TGATGATGATGCGCAGGATA+AGG | - | Chr1:60478358-60478377 | None:intergenic | 45.0% |
| !! | AAGACTTGATGATGATGCGC+AGG | - | Chr1:60478364-60478383 | None:intergenic | 45.0% |
| !! | CCTACGTCAGAAGGTGTTAA+GGG | - | Chr1:60477923-60477942 | None:intergenic | 45.0% |
| !! | TCCTACGTCAGAAGGTGTTA+AGG | - | Chr1:60477924-60477943 | None:intergenic | 45.0% |
| !!! | GTCTTCGGGTTTTATTACGG+TGG | - | Chr1:60477876-60477895 | None:intergenic | 45.0% |
| !!! | TTCGGGTTTTATTACGGTGG+TGG | - | Chr1:60477873-60477892 | None:intergenic | 45.0% |
| AGTCGGCGTATGTTAGCAGA+GGG | + | Chr1:60478239-60478258 | MsG0180003314.01.T01:CDS | 50.0% | |
| ATGCGCAGAATAGAACCCTC+TGG | - | Chr1:60478332-60478351 | None:intergenic | 50.0% | |
| CCCTTAACACCTTCTGACGT+AGG | + | Chr1:60477920-60477939 | MsG0180003314.01.T01:CDS | 50.0% | |
| AATGGTGTAGGGTGGTCCAG+AGG | + | Chr1:60478313-60478332 | MsG0180003314.01.T01:CDS | 55.0% | |
| ATCAACTGGAGGAGGAGGAG+TGG | + | Chr1:60478208-60478227 | MsG0180003314.01.T01:CDS | 55.0% | |
| ATGGTGTAGGGTGGTCCAGA+GGG | + | Chr1:60478314-60478333 | MsG0180003314.01.T01:CDS | 55.0% | |
| CAGTCGGCGTATGTTAGCAG+AGG | + | Chr1:60478238-60478257 | MsG0180003314.01.T01:CDS | 55.0% | |
| GAGGAGTGGGGATGATCAGT+CGG | + | Chr1:60478222-60478241 | MsG0180003314.01.T01:CDS | 55.0% | |
| GCGTATGTTAGCAGAGGGGT+GGG | + | Chr1:60478244-60478263 | MsG0180003314.01.T01:CDS | 55.0% | |
| GGGGTGGGACATCATGGTAA+AGG | + | Chr1:60478259-60478278 | MsG0180003314.01.T01:CDS | 55.0% | |
| GTCGGCGTATGTTAGCAGAG+GGG | + | Chr1:60478240-60478259 | MsG0180003314.01.T01:CDS | 55.0% | |
| TCAACTGGAGGAGGAGGAGT+GGG | + | Chr1:60478209-60478228 | MsG0180003314.01.T01:CDS | 55.0% | |
| TCCATCACCACCAACCTCCA+TGG | + | Chr1:60477774-60477793 | MsG0180003314.01.T01:CDS | 55.0% | |
| !! | ACCATGGAGGTTGGTGGTGA+TGG | - | Chr1:60477778-60477797 | None:intergenic | 55.0% |
| AGCAGAGGGGTGGGACATCA+TGG | + | Chr1:60478253-60478272 | MsG0180003314.01.T01:CDS | 60.0% | |
| CAACTGGAGGAGGAGGAGTG+GGG | + | Chr1:60478210-60478229 | MsG0180003314.01.T01:CDS | 60.0% | |
| GGCGTATGTTAGCAGAGGGG+TGG | + | Chr1:60478243-60478262 | MsG0180003314.01.T01:CDS | 60.0% | |
| GCAGACTCCGCCGAGTGCAA+AGG | + | Chr1:60478004-60478023 | MsG0180003314.01.T01:CDS | 65.0% | |
| GCGGAGTCTGCTCCGCCGAG+TGG | - | Chr1:60477995-60478014 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 60477674 | 60478489 | 60477674 | ID=MsG0180003314.01;Name=MsG0180003314.01 |
| Chr1 | mRNA | 60477674 | 60478489 | 60477674 | ID=MsG0180003314.01.T01;Parent=MsG0180003314.01;Name=MsG0180003314.01.T01;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|271 |
| Chr1 | exon | 60477674 | 60478489 | 60477674 | ID=MsG0180003314.01.T01:exon:49337;Parent=MsG0180003314.01.T01 |
| Chr1 | CDS | 60477674 | 60478489 | 60477674 | ID=MsG0180003314.01.T01:cds;Parent=MsG0180003314.01.T01 |
| Gene Sequence |
| Protein sequence |
