AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004007.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004007.01.T01 MTR_4g102520 97.436 585 13 2 1 584 1 584 0.0 1192
MsG0180004007.01.T01 MTR_1g072740 98.318 535 8 1 1 535 1 534 0.0 1090
MsG0180004007.01.T01 MTR_8g467040 33.226 310 193 4 282 581 107 412 2.07e-51 182
MsG0180004007.01.T01 MTR_4g119620 27.964 329 210 10 270 584 6 321 2.71e-33 130
MsG0180004007.01.T01 MTR_1g072140 25.325 308 217 8 281 584 14 312 1.56e-29 119
MsG0180004007.01.T01 MTR_7g086360 26.730 318 220 9 268 581 32 340 2.96e-26 110
MsG0180004007.01.T01 MTR_8g092620 27.687 307 203 10 282 584 6 297 1.53e-24 104
MsG0180004007.01.T01 MTR_8g092620 24.514 257 147 8 283 496 47 299 2.05e-12 68.6
MsG0180004007.01.T01 MTR_4g104380 25.962 312 206 8 282 584 218 513 3.15e-24 107
MsG0180004007.01.T01 MTR_4g104380 33.019 106 65 3 273 374 289 392 7.98e-12 68.2
MsG0180004007.01.T01 MTR_3g075400 26.471 306 214 8 281 584 212 508 3.76e-23 103
MsG0180004007.01.T01 MTR_8g092620 27.541 305 202 10 282 582 13 302 3.84e-23 101
MsG0180004007.01.T01 MTR_2g436510 26.299 308 195 12 291 584 167 456 3.61e-19 91.3
MsG0180004007.01.T01 MTR_7g076230 26.132 287 188 9 292 560 367 647 5.99e-19 91.7
MsG0180004007.01.T01 MTR_8g092620 28.037 214 139 8 282 491 6 208 1.61e-16 79.3
MsG0180004007.01.T01 MTR_6g004040 29.825 171 111 6 285 453 92 255 1.64e-16 83.6
MsG0180004007.01.T01 MTR_6g004040 23.264 288 197 10 290 565 12 287 1.74e-14 77.0
MsG0180004007.01.T01 MTR_6g004040 24.868 189 135 4 396 584 31 212 3.65e-13 73.2
MsG0180004007.01.T01 MTR_6g004040 31.538 130 80 4 284 410 133 256 2.28e-11 67.4
MsG0180004007.01.T01 MTR_1g069345 24.691 324 227 11 267 584 191 503 8.33e-16 80.9
MsG0180004007.01.T01 MTR_2g012630 29.545 176 114 7 285 458 91 258 1.80e-15 80.5
MsG0180004007.01.T01 MTR_2g012630 23.737 198 144 4 387 584 21 211 3.71e-13 73.2
MsG0180004007.01.T01 MTR_2g012630 22.867 293 198 10 287 565 8 286 1.65e-12 71.2
MsG0180004007.01.T01 MTR_2g012630 29.545 176 114 7 285 458 91 258 1.84e-15 80.5
MsG0180004007.01.T01 MTR_2g012630 23.737 198 144 4 387 584 21 211 4.69e-13 72.8
MsG0180004007.01.T01 MTR_2g012630 22.867 293 198 10 287 565 8 286 1.80e-12 70.9
MsG0180004007.01.T01 MTR_1g054300 23.622 381 201 11 285 584 110 481 2.34e-15 79.3
MsG0180004007.01.T01 MTR_1g097140 25.329 304 204 14 287 584 73 359 3.56e-15 78.2
MsG0180004007.01.T01 MTR_5g090420 21.338 314 234 8 276 584 243 548 2.36e-14 76.6
MsG0180004007.01.T01 MTR_3g052220 23.824 319 217 11 283 584 202 511 2.62e-14 76.3
MsG0180004007.01.T01 MTR_3g116500 24.127 315 215 10 289 584 60 369 2.41e-13 72.4
MsG0180004007.01.T01 MTR_3g116500 26.222 225 150 7 373 584 38 259 8.78e-13 69.3
MsG0180004007.01.T01 MTR_8g106790 23.022 278 183 12 282 539 54 320 1.49e-12 69.3
MsG0180004007.01.T01 MTR_2g060520 21.429 322 228 8 283 584 115 431 6.53e-12 68.2
MsG0180004007.01.T01 MTR_4g123597 22.812 320 212 14 285 584 347 651 7.60e-12 68.9
MsG0180004007.01.T01 MTR_4g105700 21.639 305 212 11 298 584 316 611 9.52e-12 68.6
MsG0180004007.01.T01 MTR_1g034785 24.339 189 117 5 285 451 109 293 5.31e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004007.01.T01 AT1G10580 77.607 585 117 4 1 584 1 572 0.0 936
MsG0180004007.01.T01 AT5G54520 32.915 319 204 3 274 584 140 456 1.12e-54 192
MsG0180004007.01.T01 AT3G49660 25.321 312 215 9 281 584 11 312 2.50e-29 119
MsG0180004007.01.T01 AT3G49660 28.767 219 145 6 286 499 105 317 2.19e-25 107
MsG0180004007.01.T01 AT5G64730 27.508 309 201 11 282 584 6 297 8.20e-27 111
MsG0180004007.01.T01 AT4G15900 29.967 307 183 12 292 584 174 462 4.46e-26 112
MsG0180004007.01.T01 AT2G43770 26.460 291 206 7 291 578 50 335 1.31e-25 108
MsG0180004007.01.T01 AT4G02730 24.759 311 216 10 281 584 30 329 1.45e-24 105
MsG0180004007.01.T01 AT3G16650 28.990 307 185 13 292 584 168 455 6.27e-22 99.8
MsG0180004007.01.T01 AT5G50230 24.407 295 199 7 282 567 213 492 1.16e-19 92.8
MsG0180004007.01.T01 AT5G23430 23.256 301 200 12 287 578 9 287 1.45e-17 87.0
MsG0180004007.01.T01 AT5G23430 30.000 150 97 5 285 432 92 235 1.32e-14 77.8
MsG0180004007.01.T01 AT5G23430 25.000 192 131 4 396 584 31 212 4.75e-13 72.8
MsG0180004007.01.T01 AT5G23430 29.921 127 86 3 284 410 133 256 3.06e-11 67.0
MsG0180004007.01.T01 AT5G23430 23.256 301 200 12 287 578 9 287 1.46e-17 87.0
MsG0180004007.01.T01 AT5G23430 30.000 150 97 5 285 432 92 235 1.31e-14 77.8
MsG0180004007.01.T01 AT5G23430 25.000 192 131 4 396 584 31 212 4.55e-13 72.8
MsG0180004007.01.T01 AT5G23430 29.921 127 86 3 284 410 133 256 2.98e-11 67.0
MsG0180004007.01.T01 AT5G23430 23.256 301 200 12 287 578 9 287 1.46e-17 87.0
MsG0180004007.01.T01 AT5G23430 30.000 150 97 5 285 432 92 235 1.31e-14 77.8
MsG0180004007.01.T01 AT5G23430 25.000 192 131 4 396 584 31 212 4.55e-13 72.8
MsG0180004007.01.T01 AT5G23430 29.921 127 86 3 284 410 133 256 2.98e-11 67.0
MsG0180004007.01.T01 AT5G08560 23.453 307 222 8 282 584 262 559 1.66e-17 86.7
MsG0180004007.01.T01 AT5G08560 23.453 307 222 8 282 584 262 559 1.66e-17 86.7
MsG0180004007.01.T01 AT5G08560 23.453 307 222 8 282 584 262 559 1.66e-17 86.7
MsG0180004007.01.T01 AT5G08390 23.913 276 192 9 287 561 9 267 2.70e-17 86.3
MsG0180004007.01.T01 AT5G08390 32.000 150 94 5 285 432 92 235 1.78e-15 80.5
MsG0180004007.01.T01 AT5G08390 25.000 192 131 4 396 584 31 212 3.14e-13 73.2
MsG0180004007.01.T01 AT5G08390 32.283 127 83 3 284 410 133 256 1.73e-12 70.9
MsG0180004007.01.T01 AT1G61210 31.429 175 112 6 285 458 91 258 7.12e-17 85.1
MsG0180004007.01.T01 AT1G61210 25.085 295 190 11 292 577 13 285 7.08e-16 82.0
MsG0180004007.01.T01 AT1G61210 23.810 189 137 4 396 584 30 211 1.29e-11 68.2
MsG0180004007.01.T01 AT1G61210 31.008 129 82 5 284 410 132 255 1.31e-11 68.2
MsG0180004007.01.T01 AT1G61210 31.429 175 112 6 285 458 91 258 9.68e-17 84.7
MsG0180004007.01.T01 AT1G61210 25.714 280 182 10 292 567 13 270 1.16e-15 81.3
MsG0180004007.01.T01 AT1G61210 31.008 129 82 5 284 410 132 255 1.58e-11 68.2
MsG0180004007.01.T01 AT1G61210 23.810 189 137 4 396 584 30 211 1.64e-11 68.2
MsG0180004007.01.T01 AT1G61210 31.429 175 112 6 285 458 91 258 1.00e-16 84.7
MsG0180004007.01.T01 AT1G61210 25.714 280 182 10 292 567 13 270 1.26e-15 81.3
MsG0180004007.01.T01 AT1G61210 23.810 189 137 4 396 584 30 211 1.48e-11 68.2
MsG0180004007.01.T01 AT1G61210 31.008 129 82 5 284 410 132 255 1.65e-11 68.2
MsG0180004007.01.T01 AT1G15440 26.457 223 156 5 292 510 347 565 1.52e-16 84.0
MsG0180004007.01.T01 AT1G15440 26.457 223 156 5 292 510 387 605 1.99e-16 83.6
MsG0180004007.01.T01 AT5G43920 24.688 320 218 12 278 584 204 513 3.21e-16 82.4
MsG0180004007.01.T01 AT1G11160 24.742 291 195 9 287 565 8 286 6.02e-16 82.0
MsG0180004007.01.T01 AT1G11160 27.684 177 120 6 285 460 91 260 6.57e-15 79.0
MsG0180004007.01.T01 AT1G11160 25.397 189 134 4 396 584 30 211 1.35e-14 77.8
MsG0180004007.01.T01 AT1G11160 30.534 131 80 6 284 410 132 255 5.94e-11 66.2
MsG0180004007.01.T01 AT1G11160 24.742 291 195 9 287 565 8 286 6.12e-16 82.0
MsG0180004007.01.T01 AT1G11160 27.684 177 120 6 285 460 91 260 6.34e-15 79.0
MsG0180004007.01.T01 AT1G11160 25.397 189 134 4 396 584 30 211 1.35e-14 77.8
MsG0180004007.01.T01 AT1G11160 30.534 131 80 6 284 410 132 255 5.63e-11 66.2
MsG0180004007.01.T01 AT1G11160 24.742 291 195 9 287 565 8 286 6.23e-16 82.0
MsG0180004007.01.T01 AT1G11160 27.684 177 120 6 285 460 91 260 7.04e-15 78.6
MsG0180004007.01.T01 AT1G11160 25.397 189 134 4 396 584 30 211 1.26e-14 77.8
MsG0180004007.01.T01 AT1G11160 30.534 131 80 6 284 410 132 255 6.04e-11 66.2
MsG0180004007.01.T01 AT1G11160 27.684 177 120 6 285 460 49 218 6.06e-15 79.0
MsG0180004007.01.T01 AT1G11160 25.749 167 117 4 418 584 10 169 1.40e-12 71.2
MsG0180004007.01.T01 AT1G11160 24.803 254 168 8 324 565 2 244 1.22e-11 68.2
MsG0180004007.01.T01 AT1G11160 30.534 131 80 6 284 410 90 213 5.41e-11 66.2
MsG0180004007.01.T01 AT3G18130 24.907 269 175 11 291 539 60 321 6.37e-14 73.6
MsG0180004007.01.T01 AT3G18130 24.907 269 184 9 293 553 14 272 1.37e-11 66.6
MsG0180004007.01.T01 AT5G52820 25.000 300 200 11 291 584 191 471 2.75e-13 72.8
MsG0180004007.01.T01 AT2G33340 25.591 254 173 9 285 532 255 498 6.47e-13 72.0
MsG0180004007.01.T01 AT2G33340 25.591 254 173 9 285 532 255 498 6.47e-13 72.0
MsG0180004007.01.T01 AT1G48630 24.907 269 177 11 291 541 60 321 7.17e-13 70.5
MsG0180004007.01.T01 AT1G48630 24.542 273 188 9 289 553 10 272 7.44e-12 67.4
MsG0180004007.01.T01 AT5G16750 25.444 169 118 5 289 452 55 220 9.30e-13 72.0
MsG0180004007.01.T01 AT2G41500 23.228 254 179 7 335 584 252 493 1.25e-12 70.9
MsG0180004007.01.T01 AT2G41500 25.472 212 152 6 286 496 331 537 4.04e-12 69.3
MsG0180004007.01.T01 AT2G41500 23.228 254 179 7 335 584 252 493 1.25e-12 70.9
MsG0180004007.01.T01 AT2G41500 25.472 212 152 6 286 496 331 537 4.04e-12 69.3
MsG0180004007.01.T01 AT1G73720 24.451 319 214 12 283 584 201 509 3.75e-12 69.3
MsG0180004007.01.T01 AT3G21540 23.864 264 174 12 334 584 402 651 9.42e-12 68.6
MsG0180004007.01.T01 AT3G21540 27.094 203 134 8 303 498 26 221 5.85e-11 66.2
MsG0180004007.01.T01 AT1G79990 22.460 187 141 3 310 494 72 256 1.62e-11 67.8
MsG0180004007.01.T01 AT2G33340 27.011 174 117 6 285 453 255 423 1.65e-11 67.4
MsG0180004007.01.T01 AT1G18080 23.420 269 182 9 291 541 60 322 1.79e-11 66.2
MsG0180004007.01.T01 AT1G18080 22.695 282 161 7 289 562 10 242 2.05e-11 65.9
MsG0180004007.01.T01 AT1G79990 22.460 187 141 3 310 494 72 256 2.10e-11 67.4
MsG0180004007.01.T01 AT5G60940 23.125 320 224 9 282 584 111 425 3.63e-11 65.9
MsG0180004007.01.T01 AT5G60940 23.125 320 224 9 282 584 19 333 5.86e-11 64.7
MsG0180004007.01.T01 AT5G67320 23.464 358 202 14 281 575 252 600 6.03e-11 65.9

Find 156 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATACTAAGGTTAAAATT+TGG 0.172435 1:+71709086 MsG0180004007.01.T01:CDS
GATGGGTTTGGAGAGGGTTT+TGG 0.192541 1:-71708300 None:intergenic
GTGAGGGTAAGTGTTGGTTC+TGG 0.241552 1:+71709743 MsG0180004007.01.T01:CDS
AGAATCAAATGACCCGAATT+TGG 0.271905 1:-71709052 None:intergenic
ATCGAAATCACCGACGTAAT+TGG 0.272574 1:-71708540 None:intergenic
ACATTCTGTTTATCCTCATC+TGG 0.288775 1:-71709307 None:intergenic
GGATACTAAGGTTAAAATTT+GGG 0.302166 1:+71709087 MsG0180004007.01.T01:CDS
AGCATGGTATCGTCGACTTT+GGG 0.305375 1:-71708257 None:intergenic
CAAGAGTATGATCAGCATTT+GGG 0.309524 1:+71709394 MsG0180004007.01.T01:CDS
GAAATGTATGAGGACTTATA+TGG 0.321943 1:+71709126 MsG0180004007.01.T01:CDS
TTGAGTTGGGTCGATGGGTT+TGG 0.324589 1:-71708312 None:intergenic
TCCCTCAGGGTATGGGAATA+TGG 0.330247 1:+71709481 MsG0180004007.01.T01:CDS
TTGGCTCGCCGCTCAGAGTT+TGG 0.331077 1:+71709582 MsG0180004007.01.T01:CDS
CGAAAGGTGTTTCCGCGATT+AGG 0.337658 1:+71709023 MsG0180004007.01.T01:CDS
TGATAAGAATATTAAGTATT+GGG 0.340716 1:+71709216 MsG0180004007.01.T01:CDS
GTTCAGTGGGATATGAATAC+TGG 0.343180 1:+71709361 MsG0180004007.01.T01:CDS
CAGCTCTGGGCCCCGATTCA+AGG 0.351014 1:+71708365 MsG0180004007.01.T01:CDS
TGAGGGTAAGTGTTGGTTCT+GGG 0.355149 1:+71709744 MsG0180004007.01.T01:CDS
CGTTGTTGTCGTCGGTGTAT+TGG 0.360399 1:-71708157 None:intergenic
TGGGTCATTCAAAAGCTGTT+AGG 0.360518 1:+71709146 MsG0180004007.01.T01:CDS
TCAAGAGTATGATCAGCATT+TGG 0.367145 1:+71709393 MsG0180004007.01.T01:CDS
CGAAGAGATTGGTTCATACT+TGG 0.367310 1:+71708990 MsG0180004007.01.T01:CDS
GCGGCGAGCCAATTGGCATT+GGG 0.372981 1:-71709571 None:intergenic
AACAACCATGCCTCAGAAGC+TGG 0.373950 1:-71708716 None:intergenic
TTTGCTGGACATATTGTTGC+TGG 0.377860 1:+71709664 MsG0180004007.01.T01:CDS
GGTGAGATGGGCCTTGAATC+GGG 0.381007 1:-71708376 None:intergenic
CGATATAACCTGCCCCGTTT+CGG 0.387388 1:-71709242 None:intergenic
AAAGATAAGAGTACCTTTCA+TGG 0.388138 1:+71708884 MsG0180004007.01.T01:CDS
TTGTGCTATAAATAAGTATC+TGG 0.390504 1:-71709609 None:intergenic
ACCCTACCTACGACCAGCTC+TGG 0.397227 1:+71708351 MsG0180004007.01.T01:CDS
CACTTCACCCCAATGCCAAT+TGG 0.397316 1:+71709563 MsG0180004007.01.T01:CDS
TTACTCGCTTTAGCATCTTT+CGG 0.399207 1:-71708950 None:intergenic
GGGATTATCAAGGTAGGTCT+TGG 0.401179 1:+71708918 MsG0180004007.01.T01:CDS
TTTGGGGTCGGCGACGGTTA+GGG 0.403402 1:-71708282 None:intergenic
GTAAGTGTTGGTTCTGGGAT+TGG 0.407813 1:+71709749 MsG0180004007.01.T01:CDS
CTTGAATCGGGGCCCAGAGC+TGG 0.409734 1:-71708364 None:intergenic
GCAAAGTAGCGACGTGTGGC+TGG 0.411956 1:+71709851 MsG0180004007.01.T01:CDS
GAGCATGGTATCGTCGACTT+TGG 0.418651 1:-71708258 None:intergenic
AGCGGCGAGCCAATTGGCAT+TGG 0.418827 1:-71709572 None:intergenic
GGGTGAGATGGGCCTTGAAT+CGG 0.419829 1:-71708377 None:intergenic
ATGATAAGAATATTAAGTAT+TGG 0.420715 1:+71709215 MsG0180004007.01.T01:CDS
TCTTCTTCTGTTCACGGTGT+GGG 0.426132 1:-71708601 None:intergenic
GAACGGGAAGGGAGGAGACG+AGG 0.429345 1:-71708227 None:intergenic
AAGTATTGGGATACCGAAAC+GGG 0.432545 1:+71709229 MsG0180004007.01.T01:CDS
ATGACAAGTCCCTCAGGGTA+TGG 0.434880 1:+71709473 MsG0180004007.01.T01:CDS
GAGTCCTTGGGCTGGGAAGA+AGG 0.437077 1:+71708751 MsG0180004007.01.T01:CDS
CTCTTCTTCTGTTCACGGTG+TGG 0.437638 1:-71708602 None:intergenic
CTTCGACGAAACCGAGTTTG+TGG 0.444127 1:-71708436 None:intergenic
GCCCAGAGCTGGTCGTAGGT+AGG 0.447192 1:-71708353 None:intergenic
TTCGGGTCATTTGATTCTCT+CGG 0.449795 1:+71709057 MsG0180004007.01.T01:CDS
GGGTTAAGCTTCACAACATA+AGG 0.453310 1:-71709286 None:intergenic
TGAAGAATAAGAAGAGTCCT+TGG 0.458759 1:+71708738 MsG0180004007.01.T01:CDS
TGGGTCGATGGGTTTGGAGA+GGG 0.461924 1:-71708306 None:intergenic
TTGTTATATACCGAAGAGAT+TGG 0.463597 1:+71708979 MsG0180004007.01.T01:CDS
TGGTTGCGAGTGGCATCCTC+TGG 0.463609 1:+71709822 MsG0180004007.01.T01:CDS
GGGCGGCGGAACGGGAAGGG+AGG 0.465040 1:-71708235 None:intergenic
GGCATTGGGGTGAAGTGAAA+TGG 0.465903 1:-71709557 None:intergenic
TAGCGACGTGTGGCTGGGAC+GGG 0.469608 1:+71709857 MsG0180004007.01.T01:CDS
CCTTTCCTCTTTCCCATGAA+AGG 0.470308 1:-71708897 None:intergenic
GGGTCATTCAAAAGCTGTTA+GGG 0.470465 1:+71709147 MsG0180004007.01.T01:CDS
AGGTGTTGAGTTGGGTCGAT+GGG 0.471106 1:-71708317 None:intergenic
CCCAGAGCTGGTCGTAGGTA+GGG 0.477469 1:-71708352 None:intergenic
CTGATATACTTTATAACTAC+AGG 0.479452 1:-71709508 None:intergenic
TCAATACTGGGAAATGTATG+AGG 0.483897 1:+71709116 MsG0180004007.01.T01:CDS
TGTTGCTGGATATGCTTGTC+AGG 0.489525 1:+71709678 MsG0180004007.01.T01:CDS
CCAGTGATGACAAGTCCCTC+AGG 0.489956 1:+71709467 MsG0180004007.01.T01:CDS
CTCGGCTGGTATGGATACTA+AGG 0.491505 1:+71709075 MsG0180004007.01.T01:CDS
AGGCGATAAGGTGTTGAGTT+GGG 0.492099 1:-71708325 None:intergenic
TTTGATTCTCTCGGCTGGTA+TGG 0.492749 1:+71709066 MsG0180004007.01.T01:CDS
CTTTCATGGGAAAGAGGAAA+GGG 0.500065 1:+71708898 MsG0180004007.01.T01:CDS
GGTCATTTGATTCTCTCGGC+TGG 0.501830 1:+71709061 MsG0180004007.01.T01:CDS
CATTCTGTTTATCCTCATCT+GGG 0.502022 1:-71709306 None:intergenic
CCCTACCTACGACCAGCTCT+GGG 0.505645 1:+71708352 MsG0180004007.01.T01:CDS
CAAGTATGAACCAATCTCTT+CGG 0.512443 1:-71708989 None:intergenic
GCTAAACCGTCTTTAGCGTA+AGG 0.513178 1:-71708398 None:intergenic
ACTCTGAGCGGCGAGCCAAT+TGG 0.513719 1:-71709578 None:intergenic
TAAGTATTGGGATACCGAAA+CGG 0.518461 1:+71709228 MsG0180004007.01.T01:CDS
ATCTCAAAACCCTAATTCAC+CGG 0.519645 1:+71708193 MsG0180004007.01.T01:CDS
CAAAGTAGCGACGTGTGGCT+GGG 0.520964 1:+71709852 MsG0180004007.01.T01:CDS
AGGTAGGGTTGAAGGCGATA+AGG 0.521290 1:-71708337 None:intergenic
TTGGGATACCGAAACGGGGC+AGG 0.523429 1:+71709234 MsG0180004007.01.T01:CDS
GTAGCGACGTGTGGCTGGGA+CGG 0.525013 1:+71709856 MsG0180004007.01.T01:CDS
GTTATATCGACTTTCTCCAC+TGG 0.528482 1:+71709256 MsG0180004007.01.T01:CDS
TCTTTAGCGTAAGGGTGAGA+TGG 0.528553 1:-71708389 None:intergenic
AAATGTATGAGGACTTATAT+GGG 0.528951 1:+71709127 MsG0180004007.01.T01:CDS
GATTGAAAACCCAGCTTCTG+AGG 0.529050 1:+71708706 MsG0180004007.01.T01:CDS
CTGGTCGTAGGTAGGGTTGA+AGG 0.530035 1:-71708345 None:intergenic
AAGGCGATAAGGTGTTGAGT+TGG 0.533837 1:-71708326 None:intergenic
GAGTACCTTTCATGGGAAAG+AGG 0.534334 1:+71708892 MsG0180004007.01.T01:CDS
CCTGAGGGACTTGTCATCAC+TGG 0.537996 1:-71709467 None:intergenic
TGATAAGAAGATTGTTCAGT+GGG 0.538924 1:+71709348 MsG0180004007.01.T01:CDS
ATAAGAAGAGTCCTTGGGCT+GGG 0.539663 1:+71708744 MsG0180004007.01.T01:CDS
ACAACCATGCCTCAGAAGCT+GGG 0.540280 1:-71708715 None:intergenic
CTTTAGCGTAAGGGTGAGAT+GGG 0.540886 1:-71708388 None:intergenic
TGTCACGAAGGCGTTACCAT+TGG 0.543297 1:+71709802 MsG0180004007.01.T01:CDS
AAAACCCAGCTTCTGAGGCA+TGG 0.546170 1:+71708711 MsG0180004007.01.T01:CDS
AAGATAAGAGTACCTTTCAT+GGG 0.546485 1:+71708885 MsG0180004007.01.T01:CDS
TTGGGTCGATGGGTTTGGAG+AGG 0.547307 1:-71708307 None:intergenic
TGACAAGTCCCTCAGGGTAT+GGG 0.550285 1:+71709474 MsG0180004007.01.T01:CDS
CCTTCCTTCTTCCCAGCCCA+AGG 0.553576 1:-71708755 None:intergenic
AAGGTGTTGAGTTGGGTCGA+TGG 0.555828 1:-71708318 None:intergenic
TGCTGTTCATCGAAGAGGAA+AGG 0.559395 1:-71708473 None:intergenic
GGGACGGGTTGATAAAGTAC+TGG 0.561357 1:+71709872 MsG0180004007.01.T01:CDS
GTCTGGGTCGTTGTTGTCGT+CGG 0.562377 1:-71708165 None:intergenic
GAAGAATAAGAAGAGTCCTT+GGG 0.563353 1:+71708739 MsG0180004007.01.T01:CDS
CCTTGGGCTGGGAAGAAGGA+AGG 0.564772 1:+71708755 MsG0180004007.01.T01:CDS
GGGAAGAAGGAAGGTTTACA+AGG 0.566983 1:+71708764 MsG0180004007.01.T01:CDS
AATAAGAAGAGTCCTTGGGC+TGG 0.567302 1:+71708743 MsG0180004007.01.T01:CDS
GACATGACAAAACGTCCATC+CGG 0.567963 1:-71709712 None:intergenic
GCATGGTATCGTCGACTTTG+GGG 0.568457 1:-71708256 None:intergenic
TGTCATGTCGGGTGATGGTG+AGG 0.571408 1:+71709726 MsG0180004007.01.T01:CDS
ATTGTTATCGACAAAAGTAA+TGG 0.571823 1:-71709428 None:intergenic
AAAGAGGAAAGGGATTATCA+AGG 0.572402 1:+71708908 MsG0180004007.01.T01:CDS
CGGGAAGGGAGGAGACGAGG+TGG 0.573173 1:-71708224 None:intergenic
GTGAGATGGGCCTTGAATCG+GGG 0.578748 1:-71708375 None:intergenic
CCTTTCATGGGAAAGAGGAA+AGG 0.585006 1:+71708897 MsG0180004007.01.T01:CDS
AACAACAACGAAGATGAAGA+TGG 0.585338 1:+71708677 MsG0180004007.01.T01:CDS
AGATTGGTTCATACTTGGAG+TGG 0.586471 1:+71708995 MsG0180004007.01.T01:CDS
CGGCGAGCCAATTGGCATTG+GGG 0.587352 1:-71709570 None:intergenic
CTCGCTTTAGCATCTTTCGG+AGG 0.588602 1:-71708947 None:intergenic
AAGAGTATGATCAGCATTTG+GGG 0.593826 1:+71709395 MsG0180004007.01.T01:CDS
TTCAGTGGGATATGAATACT+GGG 0.594900 1:+71709362 MsG0180004007.01.T01:CDS
TTATATCGACTTTCTCCACT+GGG 0.596005 1:+71709257 MsG0180004007.01.T01:CDS
GCTACTTTGCTCTGTTCCAG+AGG 0.598337 1:-71709838 None:intergenic
AGATACTTATTTATAGCACA+AGG 0.600630 1:+71709611 MsG0180004007.01.T01:CDS
GGCGACGGTTAGGGCGAGCA+TGG 0.602244 1:-71708273 None:intergenic
GCTAAAGACGGTTTAGCACA+AGG 0.608053 1:+71708404 MsG0180004007.01.T01:CDS
GCGTTACCATTGGTTGCGAG+TGG 0.608524 1:+71709812 MsG0180004007.01.T01:CDS
AGGAAAGGGATTATCAAGGT+AGG 0.608842 1:+71708912 MsG0180004007.01.T01:CDS
CTAAACCGTCTTTAGCGTAA+GGG 0.610141 1:-71708397 None:intergenic
GTCATGTCGGGTGATGGTGA+GGG 0.625539 1:+71709727 MsG0180004007.01.T01:CDS
CGGGGCCCAGAGCTGGTCGT+AGG 0.625795 1:-71708357 None:intergenic
ACCATATTCCCATACCCTGA+GGG 0.627603 1:-71709482 None:intergenic
CAGTGATGACAAGTCCCTCA+GGG 0.630201 1:+71709468 MsG0180004007.01.T01:CDS
CATGGTATCGTCGACTTTGG+GGG 0.631047 1:-71708255 None:intergenic
TCTCACCCTTACGCTAAAGA+CGG 0.631080 1:+71708392 MsG0180004007.01.T01:CDS
AGGATGCCACTCGCAACCAA+TGG 0.631424 1:-71709818 None:intergenic
TGTTATGCTGTTCATCGAAG+AGG 0.631441 1:-71708478 None:intergenic
TTGGGGTGAAGTGAAATGGA+AGG 0.631463 1:-71709553 None:intergenic
CAGAGCAAAGTAGCGACGTG+TGG 0.656241 1:+71709847 MsG0180004007.01.T01:CDS
ACTTGGAGTGGACATACGAA+AGG 0.656984 1:+71709007 MsG0180004007.01.T01:CDS
GTGATAAGAAGATTGTTCAG+TGG 0.659340 1:+71709347 MsG0180004007.01.T01:CDS
CCGACGTAATTGGAAGCAGA+CGG 0.664084 1:-71708530 None:intergenic
TGTGAAGCTTAACCCAGATG+AGG 0.669296 1:+71709294 MsG0180004007.01.T01:CDS
GATACTTATTTATAGCACAA+GGG 0.672388 1:+71709612 MsG0180004007.01.T01:CDS
GGTATGCGTAACCACAAACT+CGG 0.673398 1:+71708425 MsG0180004007.01.T01:CDS
GTGATGGTGAGGGTAAGTGT+TGG 0.677988 1:+71709737 MsG0180004007.01.T01:CDS
AGATCAGAAGAAATATGCTG+AGG 0.679573 1:+71708799 MsG0180004007.01.T01:CDS
CTGGTTATCCAAACTCTGAG+CGG 0.682803 1:-71709590 None:intergenic
CCGTCTGCTTCCAATTACGT+CGG 0.687927 1:+71708530 MsG0180004007.01.T01:CDS
AGAACTCTCAAGTGTCACGA+AGG 0.693137 1:+71709790 MsG0180004007.01.T01:CDS
TACCATATTCCCATACCCTG+AGG 0.706671 1:-71709483 None:intergenic
GAAGGCATAGAATGCATGTG+TGG 0.724483 1:-71709535 None:intergenic
AACATAAGGAATCTTCCCAG+TGG 0.726027 1:-71709272 None:intergenic
AGTATTGGGATACCGAAACG+GGG 0.752897 1:+71709230 MsG0180004007.01.T01:CDS
AGAGTATGATCAGCATTTGG+GGG 0.760214 1:+71709396 MsG0180004007.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAAGAATATTAAGTAT+TGG + Chr1:71709215-71709234 MsG0180004007.01.T01:CDS 15.0%
!! TGATAAGAATATTAAGTATT+GGG + Chr1:71709216-71709235 MsG0180004007.01.T01:CDS 15.0%
!!! CATAACACCTTTTTAAAATT+CGG + Chr1:71708494-71708513 MsG0180004007.01.T01:CDS 20.0%
! AAATGTATGAGGACTTATAT+GGG + Chr1:71709127-71709146 MsG0180004007.01.T01:CDS 25.0%
! AGATACTTATTTATAGCACA+AGG + Chr1:71709611-71709630 MsG0180004007.01.T01:CDS 25.0%
! ATTGTTATCGACAAAAGTAA+TGG - Chr1:71709431-71709450 None:intergenic 25.0%
! CTGATATACTTTATAACTAC+AGG - Chr1:71709511-71709530 None:intergenic 25.0%
! GATACTTATTTATAGCACAA+GGG + Chr1:71709612-71709631 MsG0180004007.01.T01:CDS 25.0%
! GGATACTAAGGTTAAAATTT+GGG + Chr1:71709087-71709106 MsG0180004007.01.T01:CDS 25.0%
! TGGATACTAAGGTTAAAATT+TGG + Chr1:71709086-71709105 MsG0180004007.01.T01:CDS 25.0%
! TTCAACTTAACAAAAAGAAG+AGG + Chr1:71709641-71709660 MsG0180004007.01.T01:CDS 25.0%
! TTGTGCTATAAATAAGTATC+TGG - Chr1:71709612-71709631 None:intergenic 25.0%
!!! AGCATAACCGAATTTTAAAA+AGG - Chr1:71708504-71708523 None:intergenic 25.0%
!!! ATTAGGTTTTTTCCAAATTC+GGG + Chr1:71709040-71709059 MsG0180004007.01.T01:CDS 25.0%
!!! GATATTTGTTTTACCAATGA+TGG + Chr1:71709169-71709188 MsG0180004007.01.T01:CDS 25.0%
!!! GATTAGGTTTTTTCCAAATT+CGG + Chr1:71709039-71709058 MsG0180004007.01.T01:CDS 25.0%
!!! TTACTTTTGTCGATAACAAT+CGG + Chr1:71709431-71709450 MsG0180004007.01.T01:CDS 25.0%
AAGAAAGGTGAAGAAAAAAG+TGG + Chr1:71708833-71708852 MsG0180004007.01.T01:CDS 30.0%
ATTTGGAAAAAACCTAATCG+CGG - Chr1:71709038-71709057 None:intergenic 30.0%
CAAAAACTTAGTTCCATCAT+TGG - Chr1:71709185-71709204 None:intergenic 30.0%
GAAATGTATGAGGACTTATA+TGG + Chr1:71709126-71709145 MsG0180004007.01.T01:CDS 30.0%
TGATAAGAAGATTGTTCAGT+GGG + Chr1:71709348-71709367 MsG0180004007.01.T01:CDS 30.0%
TTGTTATATACCGAAGAGAT+TGG + Chr1:71708979-71708998 MsG0180004007.01.T01:CDS 30.0%
! GGATAAACAGAATGTTTTGT+TGG + Chr1:71709315-71709334 MsG0180004007.01.T01:CDS 30.0%
! TTTTTCTCTTCTTCTGTTCA+CGG - Chr1:71708610-71708629 None:intergenic 30.0%
!! AAAGATAAGAGTACCTTTCA+TGG + Chr1:71708884-71708903 MsG0180004007.01.T01:CDS 30.0%
!! AAGATAAGAGTACCTTTCAT+GGG + Chr1:71708885-71708904 MsG0180004007.01.T01:CDS 30.0%
!! ATTTGGGATGTTTTCAATAC+TGG + Chr1:71709103-71709122 MsG0180004007.01.T01:CDS 30.0%
!! TTTGGGATGTTTTCAATACT+GGG + Chr1:71709104-71709123 MsG0180004007.01.T01:CDS 30.0%
AAAGAGGAAAGGGATTATCA+AGG + Chr1:71708908-71708927 MsG0180004007.01.T01:CDS 35.0%
AACAAAAAGAAGAGGTTTGC+TGG + Chr1:71709649-71709668 MsG0180004007.01.T01:CDS 35.0%
AACAACAACGAAGATGAAGA+TGG + Chr1:71708677-71708696 MsG0180004007.01.T01:CDS 35.0%
ACATTCTGTTTATCCTCATC+TGG - Chr1:71709310-71709329 None:intergenic 35.0%
AGAATCAAATGACCCGAATT+TGG - Chr1:71709055-71709074 None:intergenic 35.0%
AGATCAGAAGAAATATGCTG+AGG + Chr1:71708799-71708818 MsG0180004007.01.T01:CDS 35.0%
ATCTCAAAACCCTAATTCAC+CGG + Chr1:71708193-71708212 MsG0180004007.01.T01:CDS 35.0%
CAAGTATGAACCAATCTCTT+CGG - Chr1:71708992-71709011 None:intergenic 35.0%
CATTCTGTTTATCCTCATCT+GGG - Chr1:71709309-71709328 None:intergenic 35.0%
GAAGAATAAGAAGAGTCCTT+GGG + Chr1:71708739-71708758 MsG0180004007.01.T01:CDS 35.0%
GTGATAAGAAGATTGTTCAG+TGG + Chr1:71709347-71709366 MsG0180004007.01.T01:CDS 35.0%
TCAATACTGGGAAATGTATG+AGG + Chr1:71709116-71709135 MsG0180004007.01.T01:CDS 35.0%
TGAAGAATAAGAAGAGTCCT+TGG + Chr1:71708738-71708757 MsG0180004007.01.T01:CDS 35.0%
TTACTCGCTTTAGCATCTTT+CGG - Chr1:71708953-71708972 None:intergenic 35.0%
TTCAGTGGGATATGAATACT+GGG + Chr1:71709362-71709381 MsG0180004007.01.T01:CDS 35.0%
! AAGAGTATGATCAGCATTTG+GGG + Chr1:71709395-71709414 MsG0180004007.01.T01:CDS 35.0%
! CAAGAGTATGATCAGCATTT+GGG + Chr1:71709394-71709413 MsG0180004007.01.T01:CDS 35.0%
! GAGAATTTTCCGGTGAATTA+GGG - Chr1:71708205-71708224 None:intergenic 35.0%
! GGTGAAGAAAAAAGTGGTTT+TGG + Chr1:71708839-71708858 MsG0180004007.01.T01:CDS 35.0%
! TCAAGAGTATGATCAGCATT+TGG + Chr1:71709393-71709412 MsG0180004007.01.T01:CDS 35.0%
!! AAACAGAATGTTTTGTTGGC+TGG + Chr1:71709319-71709338 MsG0180004007.01.T01:CDS 35.0%
!! TAAGTATTGGGATACCGAAA+CGG + Chr1:71709228-71709247 MsG0180004007.01.T01:CDS 35.0%
!! TTATATCGACTTTCTCCACT+GGG + Chr1:71709257-71709276 MsG0180004007.01.T01:CDS 35.0%
!!! GAAGAAAAAAGTGGTTTTGG+TGG + Chr1:71708842-71708861 MsG0180004007.01.T01:CDS 35.0%
!!! TTTTGGTGGTGAAAAAGTTG+AGG + Chr1:71708856-71708875 MsG0180004007.01.T01:CDS 35.0%
AACATAAGGAATCTTCCCAG+TGG - Chr1:71709275-71709294 None:intergenic 40.0%
AGAGTATGATCAGCATTTGG+GGG + Chr1:71709396-71709415 MsG0180004007.01.T01:CDS 40.0%
AGGAAAGGGATTATCAAGGT+AGG + Chr1:71708912-71708931 MsG0180004007.01.T01:CDS 40.0%
ATCGAAATCACCGACGTAAT+TGG - Chr1:71708543-71708562 None:intergenic 40.0%
CTAAACCGTCTTTAGCGTAA+GGG - Chr1:71708400-71708419 None:intergenic 40.0%
CTTTCATGGGAAAGAGGAAA+GGG + Chr1:71708898-71708917 MsG0180004007.01.T01:CDS 40.0%
GGGTCATTCAAAAGCTGTTA+GGG + Chr1:71709147-71709166 MsG0180004007.01.T01:CDS 40.0%
GGGTTAAGCTTCACAACATA+AGG - Chr1:71709289-71709308 None:intergenic 40.0%
GTTCAGTGGGATATGAATAC+TGG + Chr1:71709361-71709380 MsG0180004007.01.T01:CDS 40.0%
TGGGTCATTCAAAAGCTGTT+AGG + Chr1:71709146-71709165 MsG0180004007.01.T01:CDS 40.0%
TGTTATGCTGTTCATCGAAG+AGG - Chr1:71708481-71708500 None:intergenic 40.0%
TTCGGGTCATTTGATTCTCT+CGG + Chr1:71709057-71709076 MsG0180004007.01.T01:CDS 40.0%
TTTGCTGGACATATTGTTGC+TGG + Chr1:71709664-71709683 MsG0180004007.01.T01:CDS 40.0%
! AGATTGGTTCATACTTGGAG+TGG + Chr1:71708995-71709014 MsG0180004007.01.T01:CDS 40.0%
! CGAAGAGATTGGTTCATACT+TGG + Chr1:71708990-71709009 MsG0180004007.01.T01:CDS 40.0%
! GGAGAATTTTCCGGTGAATT+AGG - Chr1:71708206-71708225 None:intergenic 40.0%
! TTGTCAGGTCAATTTTTCGC+CGG + Chr1:71709693-71709712 MsG0180004007.01.T01:CDS 40.0%
!! AAGTATTGGGATACCGAAAC+GGG + Chr1:71709229-71709248 MsG0180004007.01.T01:CDS 40.0%
!! GTTATATCGACTTTCTCCAC+TGG + Chr1:71709256-71709275 MsG0180004007.01.T01:CDS 40.0%
!!! GGAACTAAGTTTTTGAGTGC+TGG + Chr1:71709190-71709209 MsG0180004007.01.T01:CDS 40.0%
!!! GGTGAATTAGGGTTTTGAGA+TGG - Chr1:71708194-71708213 None:intergenic 40.0%
AATAAGAAGAGTCCTTGGGC+TGG + Chr1:71708743-71708762 MsG0180004007.01.T01:CDS 45.0%
ACCATATTCCCATACCCTGA+GGG - Chr1:71709485-71709504 None:intergenic 45.0%
ACTTGGAGTGGACATACGAA+AGG + Chr1:71709007-71709026 MsG0180004007.01.T01:CDS 45.0%
AGAACTCTCAAGTGTCACGA+AGG + Chr1:71709790-71709809 MsG0180004007.01.T01:CDS 45.0%
ATAAGAAGAGTCCTTGGGCT+GGG + Chr1:71708744-71708763 MsG0180004007.01.T01:CDS 45.0%
CCTTTCATGGGAAAGAGGAA+AGG + Chr1:71708897-71708916 MsG0180004007.01.T01:CDS 45.0%
CCTTTCCTCTTTCCCATGAA+AGG - Chr1:71708900-71708919 None:intergenic 45.0%
CTGGTTATCCAAACTCTGAG+CGG - Chr1:71709593-71709612 None:intergenic 45.0%
CTTTAGCGTAAGGGTGAGAT+GGG - Chr1:71708391-71708410 None:intergenic 45.0%
GACATGACAAAACGTCCATC+CGG - Chr1:71709715-71709734 None:intergenic 45.0%
GAGTACCTTTCATGGGAAAG+AGG + Chr1:71708892-71708911 MsG0180004007.01.T01:CDS 45.0%
GATTGAAAACCCAGCTTCTG+AGG + Chr1:71708706-71708725 MsG0180004007.01.T01:CDS 45.0%
GCTAAACCGTCTTTAGCGTA+AGG - Chr1:71708401-71708420 None:intergenic 45.0%
GCTAAAGACGGTTTAGCACA+AGG + Chr1:71708404-71708423 MsG0180004007.01.T01:CDS 45.0%
GGGAAGAAGGAAGGTTTACA+AGG + Chr1:71708764-71708783 MsG0180004007.01.T01:CDS 45.0%
GGGATTATCAAGGTAGGTCT+TGG + Chr1:71708918-71708937 MsG0180004007.01.T01:CDS 45.0%
GGTATGCGTAACCACAAACT+CGG + Chr1:71708425-71708444 MsG0180004007.01.T01:CDS 45.0%
TACCATATTCCCATACCCTG+AGG - Chr1:71709486-71709505 None:intergenic 45.0%
TCTCACCCTTACGCTAAAGA+CGG + Chr1:71708392-71708411 MsG0180004007.01.T01:CDS 45.0%
TCTTCTTCTGTTCACGGTGT+GGG - Chr1:71708604-71708623 None:intergenic 45.0%
TCTTTAGCGTAAGGGTGAGA+TGG - Chr1:71708392-71708411 None:intergenic 45.0%
TGCTGTTCATCGAAGAGGAA+AGG - Chr1:71708476-71708495 None:intergenic 45.0%
TGTGAAGCTTAACCCAGATG+AGG + Chr1:71709294-71709313 MsG0180004007.01.T01:CDS 45.0%
TGTTGCTGGATATGCTTGTC+AGG + Chr1:71709678-71709697 MsG0180004007.01.T01:CDS 45.0%
TTGGGGTGAAGTGAAATGGA+AGG - Chr1:71709556-71709575 None:intergenic 45.0%
TTTGATTCTCTCGGCTGGTA+TGG + Chr1:71709066-71709085 MsG0180004007.01.T01:CDS 45.0%
! AGACGAGGTGGAGAATTTTC+CGG - Chr1:71708215-71708234 None:intergenic 45.0%
! AGTATTGGGATACCGAAACG+GGG + Chr1:71709230-71709249 MsG0180004007.01.T01:CDS 45.0%
! ATGGGTTTGGAGAGGGTTTT+GGG - Chr1:71708302-71708321 None:intergenic 45.0%
! GAAGGCATAGAATGCATGTG+TGG - Chr1:71709538-71709557 None:intergenic 45.0%
! GAGGAGCACGCAAAAAAGAA+AGG + Chr1:71708818-71708837 MsG0180004007.01.T01:CDS 45.0%
! GATGGACGTTTTGTCATGTC+GGG + Chr1:71709715-71709734 MsG0180004007.01.T01:CDS 45.0%
! GGATGGACGTTTTGTCATGT+CGG + Chr1:71709714-71709733 MsG0180004007.01.T01:CDS 45.0%
!! AAGGCGATAAGGTGTTGAGT+TGG - Chr1:71708329-71708348 None:intergenic 45.0%
!! AGCATGGTATCGTCGACTTT+GGG - Chr1:71708260-71708279 None:intergenic 45.0%
!! AGGCGATAAGGTGTTGAGTT+GGG - Chr1:71708328-71708347 None:intergenic 45.0%
!! GTAAGTGTTGGTTCTGGGAT+TGG + Chr1:71709749-71709768 MsG0180004007.01.T01:CDS 45.0%
!! TGAGGGTAAGTGTTGGTTCT+GGG + Chr1:71709744-71709763 MsG0180004007.01.T01:CDS 45.0%
!!! GGTTTTGAGATGGTGAGTCT+GGG - Chr1:71708184-71708203 None:intergenic 45.0%
AACAACCATGCCTCAGAAGC+TGG - Chr1:71708719-71708738 None:intergenic 50.0%
ACAACCATGCCTCAGAAGCT+GGG - Chr1:71708718-71708737 None:intergenic 50.0%
AGGTAGGGTTGAAGGCGATA+AGG - Chr1:71708340-71708359 None:intergenic 50.0%
ATGACAAGTCCCTCAGGGTA+TGG + Chr1:71709473-71709492 MsG0180004007.01.T01:CDS 50.0%
CACTTCACCCCAATGCCAAT+TGG + Chr1:71709563-71709582 MsG0180004007.01.T01:CDS 50.0%
CAGTGATGACAAGTCCCTCA+GGG + Chr1:71709468-71709487 MsG0180004007.01.T01:CDS 50.0%
CCGACGTAATTGGAAGCAGA+CGG - Chr1:71708533-71708552 None:intergenic 50.0%
CCGTCTGCTTCCAATTACGT+CGG + Chr1:71708530-71708549 MsG0180004007.01.T01:CDS 50.0%
CGATATAACCTGCCCCGTTT+CGG - Chr1:71709245-71709264 None:intergenic 50.0%
CGTTGTTGTCGTCGGTGTAT+TGG - Chr1:71708160-71708179 None:intergenic 50.0%
CTCGCTTTAGCATCTTTCGG+AGG - Chr1:71708950-71708969 None:intergenic 50.0%
CTCGGCTGGTATGGATACTA+AGG + Chr1:71709075-71709094 MsG0180004007.01.T01:CDS 50.0%
CTCTTCTTCTGTTCACGGTG+TGG - Chr1:71708605-71708624 None:intergenic 50.0%
CTTCGACGAAACCGAGTTTG+TGG - Chr1:71708439-71708458 None:intergenic 50.0%
GGTCATTTGATTCTCTCGGC+TGG + Chr1:71709061-71709080 MsG0180004007.01.T01:CDS 50.0%
GTATGATCAGCATTTGGGGG+CGG + Chr1:71709399-71709418 MsG0180004007.01.T01:CDS 50.0%
TCCCTCAGGGTATGGGAATA+TGG + Chr1:71709481-71709500 MsG0180004007.01.T01:CDS 50.0%
TGACAAGTCCCTCAGGGTAT+GGG + Chr1:71709474-71709493 MsG0180004007.01.T01:CDS 50.0%
! CAGGTCAATTTTTCGCCGGA+TGG + Chr1:71709697-71709716 MsG0180004007.01.T01:CDS 50.0%
! CGTTTTGTCATGTCGGGTGA+TGG + Chr1:71709721-71709740 MsG0180004007.01.T01:CDS 50.0%
! GCTACTTTGCTCTGTTCCAG+AGG - Chr1:71709841-71709860 None:intergenic 50.0%
! GGCATTGGGGTGAAGTGAAA+TGG - Chr1:71709560-71709579 None:intergenic 50.0%
! GTGATGGTGAGGGTAAGTGT+TGG + Chr1:71709737-71709756 MsG0180004007.01.T01:CDS 50.0%
! TGGGTTTGGAGAGGGTTTTG+GGG - Chr1:71708301-71708320 None:intergenic 50.0%
!! AAAACCCAGCTTCTGAGGCA+TGG + Chr1:71708711-71708730 MsG0180004007.01.T01:CDS 50.0%
!! AAGGTGTTGAGTTGGGTCGA+TGG - Chr1:71708321-71708340 None:intergenic 50.0%
!! AGGTGTTGAGTTGGGTCGAT+GGG - Chr1:71708320-71708339 None:intergenic 50.0%
!! CATGGTATCGTCGACTTTGG+GGG - Chr1:71708258-71708277 None:intergenic 50.0%
!! CGAAAGGTGTTTCCGCGATT+AGG + Chr1:71709023-71709042 MsG0180004007.01.T01:CDS 50.0%
!! GAGCATGGTATCGTCGACTT+TGG - Chr1:71708261-71708280 None:intergenic 50.0%
!! GATGGGTTTGGAGAGGGTTT+TGG - Chr1:71708303-71708322 None:intergenic 50.0%
!! GCATGGTATCGTCGACTTTG+GGG - Chr1:71708259-71708278 None:intergenic 50.0%
!! GGGACGGGTTGATAAAGTAC+TGG + Chr1:71709872-71709891 MsG0180004007.01.T01:CDS 50.0%
!! GTGAGGGTAAGTGTTGGTTC+TGG + Chr1:71709743-71709762 MsG0180004007.01.T01:CDS 50.0%
!! TGTCACGAAGGCGTTACCAT+TGG + Chr1:71709802-71709821 MsG0180004007.01.T01:CDS 50.0%
!! TTGAGTTGGGTCGATGGGTT+TGG - Chr1:71708315-71708334 None:intergenic 50.0%
!!! GGGTTTTGAGATGGTGAGTC+TGG - Chr1:71708185-71708204 None:intergenic 50.0%
!!! TTTGGAGAGGGTTTTGGGGT+CGG - Chr1:71708297-71708316 None:intergenic 50.0%
AGGATGCCACTCGCAACCAA+TGG - Chr1:71709821-71709840 None:intergenic 55.0%
CAAAGTAGCGACGTGTGGCT+GGG + Chr1:71709852-71709871 MsG0180004007.01.T01:CDS 55.0%
CAGAGCAAAGTAGCGACGTG+TGG + Chr1:71709847-71709866 MsG0180004007.01.T01:CDS 55.0%
CCAGTGATGACAAGTCCCTC+AGG + Chr1:71709467-71709486 MsG0180004007.01.T01:CDS 55.0%
CCTGAGGGACTTGTCATCAC+TGG - Chr1:71709470-71709489 None:intergenic 55.0%
CTGGTCGTAGGTAGGGTTGA+AGG - Chr1:71708348-71708367 None:intergenic 55.0%
GGGTGAGATGGGCCTTGAAT+CGG - Chr1:71708380-71708399 None:intergenic 55.0%
GGTGAGATGGGCCTTGAATC+GGG - Chr1:71708379-71708398 None:intergenic 55.0%
GTCTGGGTCGTTGTTGTCGT+CGG - Chr1:71708168-71708187 None:intergenic 55.0%
GTGAGATGGGCCTTGAATCG+GGG - Chr1:71708378-71708397 None:intergenic 55.0%
! GCGTTACCATTGGTTGCGAG+TGG + Chr1:71709812-71709831 MsG0180004007.01.T01:CDS 55.0%
! GTCATGTCGGGTGATGGTGA+GGG + Chr1:71709727-71709746 MsG0180004007.01.T01:CDS 55.0%
! TGGGTCGATGGGTTTGGAGA+GGG - Chr1:71708309-71708328 None:intergenic 55.0%
! TGTCATGTCGGGTGATGGTG+AGG + Chr1:71709726-71709745 MsG0180004007.01.T01:CDS 55.0%
! TTGGGTCGATGGGTTTGGAG+AGG - Chr1:71708310-71708329 None:intergenic 55.0%
ACCCTACCTACGACCAGCTC+TGG + Chr1:71708351-71708370 MsG0180004007.01.T01:CDS 60.0%
ACTCTGAGCGGCGAGCCAAT+TGG - Chr1:71709581-71709600 None:intergenic 60.0%
AGCGGCGAGCCAATTGGCAT+TGG - Chr1:71709575-71709594 None:intergenic 60.0%
CCCAGAGCTGGTCGTAGGTA+GGG - Chr1:71708355-71708374 None:intergenic 60.0%
CCCTACCTACGACCAGCTCT+GGG + Chr1:71708352-71708371 MsG0180004007.01.T01:CDS 60.0%
CCTTCCTTCTTCCCAGCCCA+AGG - Chr1:71708758-71708777 None:intergenic 60.0%
CGGCGAGCCAATTGGCATTG+GGG - Chr1:71709573-71709592 None:intergenic 60.0%
GCAAAGTAGCGACGTGTGGC+TGG + Chr1:71709851-71709870 MsG0180004007.01.T01:CDS 60.0%
GCGGCGAGCCAATTGGCATT+GGG - Chr1:71709574-71709593 None:intergenic 60.0%
TGGTTGCGAGTGGCATCCTC+TGG + Chr1:71709822-71709841 MsG0180004007.01.T01:CDS 60.0%
TTGGGATACCGAAACGGGGC+AGG + Chr1:71709234-71709253 MsG0180004007.01.T01:CDS 60.0%
! CCTTGGGCTGGGAAGAAGGA+AGG + Chr1:71708755-71708774 MsG0180004007.01.T01:CDS 60.0%
! GAGTCCTTGGGCTGGGAAGA+AGG + Chr1:71708751-71708770 MsG0180004007.01.T01:CDS 60.0%
! TTGGCTCGCCGCTCAGAGTT+TGG + Chr1:71709582-71709601 MsG0180004007.01.T01:CDS 60.0%
! TTTGGGGTCGGCGACGGTTA+GGG - Chr1:71708285-71708304 None:intergenic 60.0%
!! GGTATCGTCGACTTTGGGGG+CGG - Chr1:71708255-71708274 None:intergenic 60.0%
!!! TTTTGGGGTCGGCGACGGTT+AGG - Chr1:71708286-71708305 None:intergenic 60.0%
CTTGAATCGGGGCCCAGAGC+TGG - Chr1:71708367-71708386 None:intergenic 65.0%
GAACGGGAAGGGAGGAGACG+AGG - Chr1:71708230-71708249 None:intergenic 65.0%
GCCCAGAGCTGGTCGTAGGT+AGG - Chr1:71708356-71708375 None:intergenic 65.0%
GTAGCGACGTGTGGCTGGGA+CGG + Chr1:71709856-71709875 MsG0180004007.01.T01:CDS 65.0%
TAGCGACGTGTGGCTGGGAC+GGG + Chr1:71709857-71709876 MsG0180004007.01.T01:CDS 65.0%
!! ATCGTCGACTTTGGGGGCGG+CGG - Chr1:71708252-71708271 None:intergenic 65.0%
!! CAGCTCTGGGCCCCGATTCA+AGG + Chr1:71708365-71708384 MsG0180004007.01.T01:CDS 65.0%
!!! GAGGGTTTTGGGGTCGGCGA+CGG - Chr1:71708291-71708310 None:intergenic 65.0%
CGGGAAGGGAGGAGACGAGG+TGG - Chr1:71708227-71708246 None:intergenic 70.0%
GGCGACGGTTAGGGCGAGCA+TGG - Chr1:71708276-71708295 None:intergenic 70.0%
! CGACTTTGGGGGCGGCGGAA+CGG - Chr1:71708247-71708266 None:intergenic 70.0%
! GACTTTGGGGGCGGCGGAAC+GGG - Chr1:71708246-71708265 None:intergenic 70.0%
CGGGGCCCAGAGCTGGTCGT+AGG - Chr1:71708360-71708379 None:intergenic 75.0%
TGGGGGCGGCGGAACGGGAA+GGG - Chr1:71708241-71708260 None:intergenic 75.0%
TTGGGGGCGGCGGAACGGGA+AGG - Chr1:71708242-71708261 None:intergenic 75.0%
! GGGCGGCGGAACGGGAAGGG+AGG - Chr1:71708238-71708257 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 71708143 71709897 71708143 ID=MsG0180004007.01;Name=MsG0180004007.01
Chr1 mRNA 71708143 71709897 71708143 ID=MsG0180004007.01.T01;Parent=MsG0180004007.01;Name=MsG0180004007.01.T01;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|584
Chr1 exon 71708143 71709897 71708143 ID=MsG0180004007.01.T01:exon:4890;Parent=MsG0180004007.01.T01
Chr1 CDS 71708143 71709897 71708143 ID=MsG0180004007.01.T01:cds;Parent=MsG0180004007.01.T01
Gene Sequence

>MsG0180004007.01.T01

ATGGATCTACTCAACCAATACACCGACGACAACAACGACCCAGACTCACCATCTCAAAACCCTAATTCACCGGAAAATTCTCCACCTCGTCTCCTCCCTTCCCGTTCCGCCGCCCCCAAAGTCGACGATACCATGCTCGCCCTAACCGTCGCCGACCCCAAAACCCTCTCCAAACCCATCGACCCAACTCAACACCTTATCGCCTTCAACCCTACCTACGACCAGCTCTGGGCCCCGATTCAAGGCCCATCTCACCCTTACGCTAAAGACGGTTTAGCACAAGGTATGCGTAACCACAAACTCGGTTTCGTCGAAGACGCTAATATCGAACCTTTCCTCTTCGATGAACAGCATAACACCTTTTTAAAATTCGGTTATGCTGCTGATCCGTCTGCTTCCAATTACGTCGGTGATTTCGATGCTTTGCAGAAGAATAATGCTGCTTCTGTTTATAATATCCCACACCGTGAACAGAAGAAGAGAAAAATCGAATCTCTTAAGAAGAAAGAAGACAATGATAACGAAAAAGACAATAACAACAACGAAGATGAAGATGGTGTTGAGATTGAAAACCCAGCTTCTGAGGCATGGTTGTTGAAGAATAAGAAGAGTCCTTGGGCTGGGAAGAAGGAAGGTTTACAAGGAGAGTTAACTGAAGATCAGAAGAAATATGCTGAGGAGCACGCAAAAAAGAAAGGTGAAGAAAAAAGTGGTTTTGGTGGTGAAAAAGTTGAGGCTGTTAAAGATAAGAGTACCTTTCATGGGAAAGAGGAAAGGGATTATCAAGGTAGGTCTTGGATTGCGCCTCCGAAAGATGCTAAAGCGAGTAATGATCATTGTTATATACCGAAGAGATTGGTTCATACTTGGAGTGGACATACGAAAGGTGTTTCCGCGATTAGGTTTTTTCCAAATTCGGGTCATTTGATTCTCTCGGCTGGTATGGATACTAAGGTTAAAATTTGGGATGTTTTCAATACTGGGAAATGTATGAGGACTTATATGGGTCATTCAAAAGCTGTTAGGGATATTTGTTTTACCAATGATGGAACTAAGTTTTTGAGTGCTGGTTATGATAAGAATATTAAGTATTGGGATACCGAAACGGGGCAGGTTATATCGACTTTCTCCACTGGGAAGATTCCTTATGTTGTGAAGCTTAACCCAGATGAGGATAAACAGAATGTTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTTCAGTGGGATATGAATACTGGGCAGATCACTCAAGAGTATGATCAGCATTTGGGGGCGGTGAATACCATTACTTTTGTCGATAACAATCGGAGATTTGTTACTTCCAGTGATGACAAGTCCCTCAGGGTATGGGAATATGGTATTCCTGTAGTTATAAAGTATATCAGTGAGCCACACATGCATTCTATGCCTTCCATTTCACTTCACCCCAATGCCAATTGGCTCGCCGCTCAGAGTTTGGATAACCAGATACTTATTTATAGCACAAGGGAGAAGTTTCAACTTAACAAAAAGAAGAGGTTTGCTGGACATATTGTTGCTGGATATGCTTGTCAGGTCAATTTTTCGCCGGATGGACGTTTTGTCATGTCGGGTGATGGTGAGGGTAAGTGTTGGTTCTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTCAAGTGTCACGAAGGCGTTACCATTGGTTGCGAGTGGCATCCTCTGGAACAGAGCAAAGTAGCGACGTGTGGCTGGGACGGGTTGATAAAGTACTGGTAA

Protein sequence

>MsG0180004007.01.T01

MDLLNQYTDDNNDPDSPSQNPNSPENSPPRLLPSRSAAPKVDDTMLALTVADPKTLSKPIDPTQHLIAFNPTYDQLWAPIQGPSHPYAKDGLAQGMRNHKLGFVEDANIEPFLFDEQHNTFLKFGYAADPSASNYVGDFDALQKNNAASVYNIPHREQKKRKIESLKKKEDNDNEKDNNNNEDEDGVEIENPASEAWLLKNKKSPWAGKKEGLQGELTEDQKKYAEEHAKKKGEEKSGFGGEKVEAVKDKSTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPNSGHLILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISLHPNANWLAAQSLDNQILIYSTREKFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVTIGCEWHPLEQSKVATCGWDGLIKYW*