AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004469.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004469.01.T01 MTR_1g080470 97.719 570 10 1 1 567 1 570 0.0 1147
MsG0180004469.01.T01 MTR_1g080470 98.276 464 8 0 104 567 7 470 0.0 934
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004469.01.T01 AT5G32470 66.389 601 179 7 10 598 26 615 0.0 759

Find 143 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGACTTGCGAAGCGTTTC+TGG 0.062503 1:-78499533 MsG0180004469.01.T01:CDS
GTCTCTCTTATTTCTCTTTC+AGG 0.089732 1:-78494899 MsG0180004469.01.T01:three_prime_UTR
TTTCTGTTGGCTACTGCTTC+TGG 0.123278 1:-78497193 MsG0180004469.01.T01:CDS
TCAGGCTGATTGTCGGATTT+TGG 0.180316 1:+78496553 None:intergenic
GAGAATCATCATACATTTAT+TGG 0.192665 1:+78496423 None:intergenic
GCAGCTTCATTATAGATTAA+TGG 0.193575 1:-78494582 MsG0180004469.01.T01:three_prime_UTR
TAAAGTATAAGCAGCAATTT+TGG 0.205603 1:+78497117 None:intergenic
CTGCTGAATCCTTAAAATTA+TGG 0.221221 1:+78494668 None:intergenic
AAAATTGCTGCTTATACTTT+AGG 0.226024 1:-78497115 MsG0180004469.01.T01:CDS
TCGAGAACTCAGCAAATAAT+AGG 0.227356 1:-78496255 MsG0180004469.01.T01:CDS
CCATTTGGATTCGGTTTCTA+TGG 0.261612 1:+78499580 None:intergenic
CTATTCCTCTGATGGTTTCC+AGG 0.273448 1:-78496987 MsG0180004469.01.T01:intron
TCCAATTGGAAGGGTTTATC+TGG 0.273912 1:-78495103 MsG0180004469.01.T01:CDS
TGTCTGAAATTTCTCATTCC+TGG 0.275265 1:+78494773 None:intergenic
AGAACCATAGGGACACAATT+TGG 0.300668 1:-78495193 MsG0180004469.01.T01:CDS
TGGAGAGCGTTTGATTCTTC+AGG 0.303161 1:-78496179 MsG0180004469.01.T01:CDS
ATTAGGTCTGCTTTCTCTTC+AGG 0.304553 1:-78496064 MsG0180004469.01.T01:intron
TGTTGAGTCAGGGGTTCTTA+AGG 0.313829 1:-78496230 MsG0180004469.01.T01:CDS
ATGAGGCTGTATGCCTTTCT+TGG 0.316675 1:-78497076 MsG0180004469.01.T01:CDS
ATCACGAGACGATCTTCTTC+AGG 0.318505 1:+78496652 None:intergenic
AAACTAAGTGTCTCTTTAAC+TGG 0.341757 1:-78496793 MsG0180004469.01.T01:CDS
AATAATAGGGTTGTTGAGTC+AGG 0.361953 1:-78496241 MsG0180004469.01.T01:CDS
ATTCGAGCTATTTGATCTTC+AGG 0.363900 1:+78496535 None:intergenic
GCTGGTGTGGTGACCTCATT+AGG 0.364039 1:-78496081 MsG0180004469.01.T01:CDS
TTCTTTACACAGTCTCTAGT+TGG 0.371085 1:-78495078 MsG0180004469.01.T01:CDS
TTTCTCATTCCTGGCATGAT+TGG 0.373067 1:+78494782 None:intergenic
TGAGTTAATACTGTGCTCTT+TGG 0.378416 1:+78497237 None:intergenic
GTTGAGTCAGGGGTTCTTAA+GGG 0.382971 1:-78496229 MsG0180004469.01.T01:CDS
ATTGAAGGACTGAAAAGTTC+TGG 0.386533 1:-78497166 MsG0180004469.01.T01:CDS
TGTTGATTCATCTGCCATCT+TGG 0.390739 1:-78496599 MsG0180004469.01.T01:CDS
TTCTGTTGGCTACTGCTTCT+GGG 0.391154 1:-78497192 MsG0180004469.01.T01:CDS
TTTGTTATCTCTTTAGCTTC+CGG 0.395712 1:-78499468 MsG0180004469.01.T01:CDS
ATTGTGTCCCTATGGTTCTA+AGG 0.396530 1:+78495197 None:intergenic
TTTCAAATGCTTGTTAGATC+AGG 0.397897 1:-78494744 MsG0180004469.01.T01:three_prime_UTR
GATTGTGAATTGCTGCCATT+TGG 0.400081 1:+78499565 None:intergenic
TAGTGGTTCTTCGAAGCATC+TGG 0.405757 1:-78494837 MsG0180004469.01.T01:three_prime_UTR
TGAGTACTTTCTTCGAGGTC+TGG 0.410220 1:+78497034 None:intergenic
CATTGAAAAGCTTTATTACC+AGG 0.413331 1:-78496755 MsG0180004469.01.T01:CDS
ATACTCCTCTGTATACTGTT+TGG 0.415844 1:+78496474 None:intergenic
GAGATTGAAGAACGGATGAT+TGG 0.415990 1:+78499639 None:intergenic
CTCATTCCTGGCATGATTGG+AGG 0.418484 1:+78494785 None:intergenic
TGCATGTTCTTTCATACTGC+TGG 0.421221 1:-78496099 MsG0180004469.01.T01:CDS
GCCAGATAAACCCTTCCAAT+TGG 0.432865 1:+78495102 None:intergenic
AGTGCATGTTAAATCAAAAT+CGG 0.433883 1:+78496624 None:intergenic
ATTTATGCATATGAATTTCA+AGG 0.434571 1:+78494617 None:intergenic
CTATTTCAAGCTTCATTGCC+TGG 0.435585 1:+78496737 None:intergenic
CCAATATATTACGAAAAGCC+TGG 0.439834 1:+78495332 None:intergenic
ACAAAGAAAGCTCTTCCAAT+TGG 0.441203 1:-78495117 MsG0180004469.01.T01:CDS
TCTTTACACAGTCTCTAGTT+GGG 0.443386 1:-78495077 MsG0180004469.01.T01:CDS
GTGTTGTACTGGTATTTAGT+AGG 0.445056 1:-78494702 MsG0180004469.01.T01:three_prime_UTR
CAGACTTTGAAGTGTTGTAC+TGG 0.455330 1:-78494713 MsG0180004469.01.T01:three_prime_UTR
CGAGAACTCAGCAAATAATA+GGG 0.455612 1:-78496254 MsG0180004469.01.T01:CDS
ATCATCATACATTTATTGGC+AGG 0.455724 1:+78496427 None:intergenic
TTAGTCAAGGGTGCTATAGT+TGG 0.459081 1:+78496685 None:intergenic
TAGTTTGTCGAGCAATTCTT+CGG 0.468928 1:+78496810 None:intergenic
GAATTGCTGCCATTTGGATT+CGG 0.469510 1:+78499571 None:intergenic
TACCGGTGACATTGTTAAGA+AGG 0.475372 1:-78495377 MsG0180004469.01.T01:CDS
GCCAGCTGATTTAATTGAGA+TGG 0.477959 1:-78495440 MsG0180004469.01.T01:intron
TTGATCTTCAGGCTGATTGT+CGG 0.478317 1:+78496546 None:intergenic
AGGGTTATGTCCTTTAGTCA+AGG 0.480433 1:+78496672 None:intergenic
TGCCATTCTGATTTCTCTAG+TGG 0.480978 1:-78494854 MsG0180004469.01.T01:three_prime_UTR
AGAATCGATCTTCAAGTTAC+CGG 0.480978 1:+78499449 None:intergenic
TGTCTACTTGAAGCAGATGT+AGG 0.483362 1:-78495244 MsG0180004469.01.T01:CDS
TGTCGATCCACTTGCAATAC+GGG 0.484420 1:+78497011 None:intergenic
GATGCATGACTCACTGGTAA+AGG 0.484632 1:-78497864 MsG0180004469.01.T01:intron
ATTCACAATCACAGTGAAGC+TGG 0.488032 1:-78499552 MsG0180004469.01.T01:CDS
TTGTCGATCCACTTGCAATA+CGG 0.489328 1:+78497010 None:intergenic
AAAAGCCTGGACCTTGTCAA+TGG 0.490746 1:+78495345 None:intergenic
GGGTTATGTCCTTTAGTCAA+GGG 0.495478 1:+78496673 None:intergenic
AGAAAGCTCTTCCAATTGGA+AGG 0.496687 1:-78495113 MsG0180004469.01.T01:CDS
AGGAGTGTACATAGAGAAGA+TGG 0.501365 1:+78499491 None:intergenic
TTGAAGAACGGATGATTGGA+AGG 0.503290 1:+78499643 None:intergenic
AGTTCAAGCCTTAGAACCAT+AGG 0.503930 1:-78495205 MsG0180004469.01.T01:CDS
GCTAACGAGTTCAGTTATGA+TGG 0.504877 1:-78495409 MsG0180004469.01.T01:CDS
GAACATCTTGAGCGATGTAA+TGG 0.505674 1:+78499421 None:intergenic
GAAGCTAAAGAGATAACAAA+AGG 0.510492 1:+78499471 None:intergenic
AACACCAAATTGTGTCCCTA+TGG 0.510860 1:+78495189 None:intergenic
TAAGTATACAGACTTTCTGT+TGG 0.511176 1:-78497206 MsG0180004469.01.T01:CDS
TATAGCAATTTCTGCCAAGA+TGG 0.512042 1:+78496585 None:intergenic
ACTGCTTCTGGGAAGATTGA+AGG 0.512264 1:-78497181 MsG0180004469.01.T01:CDS
CTGTCTCCTCCAATCATGCC+AGG 0.512366 1:-78494791 MsG0180004469.01.T01:three_prime_UTR
AAAGCCTGGACCTTGTCAAT+GGG 0.515036 1:+78495346 None:intergenic
CTTCTGACCTCAGGAACACA+TGG 0.515072 1:-78496507 MsG0180004469.01.T01:CDS
TCACGAGACGATCTTCTTCA+GGG 0.515838 1:+78496653 None:intergenic
GCTGAAGATGCATGACTCAC+TGG 0.516947 1:-78497870 MsG0180004469.01.T01:CDS
TAACCAAGCCAGAAAACAAT+GGG 0.517719 1:+78495158 None:intergenic
ACGGGTGAGTACTTTCTTCG+AGG 0.521166 1:+78497029 None:intergenic
CCATAGAAACCGAATCCAAA+TGG 0.521368 1:-78499580 MsG0180004469.01.T01:CDS
AACTGTTTACATTGGAGACT+CGG 0.521999 1:-78495281 MsG0180004469.01.T01:CDS
GTCTCCCATTGACAAGGTCC+AGG 0.526292 1:-78495350 MsG0180004469.01.T01:CDS
ACTATAGCACCCTTGACTAA+AGG 0.527516 1:-78496682 MsG0180004469.01.T01:CDS
TGCAATACAAATACACAAGC+AGG 0.530340 1:-78494957 MsG0180004469.01.T01:three_prime_UTR
TATGATGGATCTGTTTCTAC+CGG 0.533958 1:-78495394 MsG0180004469.01.T01:CDS
ATCGACAACTATTCCTCTGA+TGG 0.541822 1:-78496995 MsG0180004469.01.T01:CDS
TCATCCACTCGATGCGCATA+CGG 0.543245 1:-78499692 MsG0180004469.01.T01:exon
AAGAGAAAGCAGACCTAATG+AGG 0.544117 1:+78496068 None:intergenic
GAAAGCTCTTCCAATTGGAA+GGG 0.547435 1:-78495112 MsG0180004469.01.T01:CDS
GAATGTTGTCTTCTGACCTC+AGG 0.547502 1:-78496516 MsG0180004469.01.T01:CDS
CAGCCTCATGCAAGGAGTCA+TGG 0.552331 1:+78497090 None:intergenic
GTTAATGGTGTATAGGAATG+GGG 0.555143 1:-78497271 MsG0180004469.01.T01:intron
TGGAACGATCTTGAATTGAA+AGG 0.556469 1:+78499600 None:intergenic
ATAATAGGGTTGTTGAGTCA+GGG 0.558224 1:-78496240 MsG0180004469.01.T01:CDS
TGAAGAACGGATGATTGGAA+GGG 0.558401 1:+78499644 None:intergenic
GCAGATGTAGGAATTGTGAT+TGG 0.562607 1:-78495232 MsG0180004469.01.T01:CDS
GTTCTTTCATACTGCTGGTG+TGG 0.562655 1:-78496094 MsG0180004469.01.T01:CDS
TAATACTGTGCTCTTTGGCA+AGG 0.563964 1:+78497242 None:intergenic
CATGCGCCCAAATTCATGCT+AGG 0.564247 1:-78495007 MsG0180004469.01.T01:three_prime_UTR
GAGCGTTTGATTCTTCAGGA+TGG 0.565677 1:-78496175 MsG0180004469.01.T01:CDS
ACATAGAGAAGATGGATTCA+CGG 0.572125 1:+78499499 None:intergenic
ATAGAAGATGTAAAGCGCGC+TGG 0.574979 1:-78496199 MsG0180004469.01.T01:CDS
TGGTGTATAGGAATGGGGAT+TGG 0.575334 1:-78497266 MsG0180004469.01.T01:intron
GATGACGATGACGATAAGCT+TGG 0.577286 1:-78497926 MsG0180004469.01.T01:CDS
ATGATTTCATAGGTATGAGT+CGG 0.580799 1:-78497963 MsG0180004469.01.T01:intron
AGAGAAATAAGAGAGACAGC+AGG 0.584475 1:+78494905 None:intergenic
TTCTGACCTCAGGAACACAT+GGG 0.589740 1:-78496506 MsG0180004469.01.T01:CDS
AGCTTGGACTCTCTCAGTTG+AGG 0.591841 1:-78497910 MsG0180004469.01.T01:CDS
CACCTTCTTAACAATGTCAC+CGG 0.597188 1:+78495375 None:intergenic
GTACTCACCCGTATTGCAAG+TGG 0.597239 1:-78497018 MsG0180004469.01.T01:CDS
TTCGAAATGAGATTGAAGAA+CGG 0.598266 1:+78499631 None:intergenic
GCTATAGTTGGCTGAAAGAG+TGG 0.601212 1:+78496697 None:intergenic
TAATAGGGTTGTTGAGTCAG+GGG 0.605903 1:-78496239 MsG0180004469.01.T01:CDS
TTAACCAAGCCAGAAAACAA+TGG 0.607882 1:+78495157 None:intergenic
GAGAGACAGCAGGCAATCTG+TGG 0.609553 1:+78494915 None:intergenic
CGGTGACATTGTTAAGAAGG+TGG 0.609806 1:-78495374 MsG0180004469.01.T01:CDS
GTTTACATTGGAGACTCGGT+GGG 0.614786 1:-78495277 MsG0180004469.01.T01:CDS
GTGCCATGACTCCTTGCATG+AGG 0.617970 1:-78497093 MsG0180004469.01.T01:CDS
CATCTTGAGCGATGTAATGG+CGG 0.622829 1:+78499424 None:intergenic
GTTCAAGCCTTAGAACCATA+GGG 0.623981 1:-78495204 MsG0180004469.01.T01:CDS
AAGGCATACAGCCTCATGCA+AGG 0.640683 1:+78497082 None:intergenic
ACCACCGTATGCGCATCGAG+TGG 0.641894 1:+78499688 None:intergenic
TCCACTCGATGCGCATACGG+TGG 0.643704 1:-78499689 MsG0180004469.01.T01:exon
GAGAACCCCATGTGTTCCTG+AGG 0.647944 1:+78496500 None:intergenic
TGTTTACATTGGAGACTCGG+TGG 0.650130 1:-78495278 MsG0180004469.01.T01:CDS
AACCACTAGAGAAATCAGAA+TGG 0.651741 1:+78494852 None:intergenic
GGTGGAGTCTCCCATTGACA+AGG 0.664349 1:-78495356 MsG0180004469.01.T01:CDS
CATCGAGTGGATGAAACACA+CGG 0.665790 1:+78499701 None:intergenic
ACAAACCTGGAAACCATCAG+AGG 0.677140 1:+78496982 None:intergenic
GATGTTGCAATTCAGAGACA+TGG 0.679874 1:-78494877 MsG0180004469.01.T01:three_prime_UTR
GTATGAAAGAACATGCACAT+TGG 0.680060 1:+78496105 None:intergenic
TCTGACCTCAGGAACACATG+GGG 0.685059 1:-78496505 MsG0180004469.01.T01:CDS
TCTATCCAAACAGTATACAG+AGG 0.708451 1:-78496479 MsG0180004469.01.T01:CDS
AATACAAATACACAAGCAGG+TGG 0.724838 1:-78494954 MsG0180004469.01.T01:three_prime_UTR
CGAGTGGATGAAACACACGG+CGG 0.899207 1:+78499704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTTATAAGACAAT+AGG + Chr1:78498826-78498845 None:intergenic 10.0%
!! AATTAATCACTAATAAATTT+AGG - Chr1:78495693-78495712 MsG0180004469.01.T01:intron 10.0%
!! TTATTCTTATATTTGAATTT+AGG - Chr1:78497450-78497469 MsG0180004469.01.T01:intron 10.0%
!!! AAATTTATTTTCCTAATTTT+TGG - Chr1:78498836-78498855 MsG0180004469.01.T01:intron 10.0%
!!! ATACTATATTTTCATAAAAA+TGG + Chr1:78495350-78495369 None:intergenic 10.0%
!!! ATTTTTAAAATATTACAGTA+TGG + Chr1:78495520-78495539 None:intergenic 10.0%
!!! TTGTTTGAAAATATTTTAAA+AGG + Chr1:78495893-78495912 None:intergenic 10.0%
!!! TTTAAAATATTTTCAAACAA+TGG - Chr1:78495893-78495912 MsG0180004469.01.T01:intron 10.0%
!!! TTTTTAAAATATTACAGTAT+GGG + Chr1:78495519-78495538 None:intergenic 10.0%
!! AAAAAATTAACTGTTTACAT+TGG - Chr1:78499009-78499028 MsG0180004469.01.T01:intron 15.0%
!! AATAAATTTATTGTCTCATT+TGG + Chr1:78495755-78495774 None:intergenic 15.0%
!! ATCAAATATACATTTAATCA+TGG - Chr1:78497403-78497422 MsG0180004469.01.T01:intron 15.0%
!! ATTAAATGTATATTTGATCA+AGG + Chr1:78497401-78497420 None:intergenic 15.0%
!! CAAAAATTTCATATAACTAT+TGG + Chr1:78498615-78498634 None:intergenic 15.0%
!! TTATTGAAAGAATTACATTA+TGG + Chr1:78495652-78495671 None:intergenic 15.0%
!!! AAGTTTTTCAAAAATTGAAA+AGG + Chr1:78496690-78496709 None:intergenic 15.0%
!!! TTGTGTTATAAAGTATTTAA+GGG - Chr1:78496551-78496570 MsG0180004469.01.T01:CDS 15.0%
!!! TTTTAAAATATTACAGTATG+GGG + Chr1:78495518-78495537 None:intergenic 15.0%
!! AAACGAAAAAAACAACAAAT+GGG + Chr1:78496839-78496858 None:intergenic 20.0%
!! AAAGTTTATGGTAAGTAATT+TGG - Chr1:78496285-78496304 MsG0180004469.01.T01:CDS 20.0%
!! AAGAAACTATTGAAAGTTTA+TGG - Chr1:78496273-78496292 MsG0180004469.01.T01:CDS 20.0%
!! ATTTATGCATATGAATTTCA+AGG + Chr1:78499684-78499703 None:intergenic 20.0%
!! TAAACGAAAAAAACAACAAA+TGG + Chr1:78496840-78496859 None:intergenic 20.0%
!! TATCAACTTAAACATAAACA+TGG + Chr1:78496874-78496893 None:intergenic 20.0%
!! TTGAATTTCTATGATTTCAT+AGG - Chr1:78496325-78496344 MsG0180004469.01.T01:intron 20.0%
!!! ATAATTTTCAACTTGTGAAT+GGG - Chr1:78496590-78496609 MsG0180004469.01.T01:CDS 20.0%
!!! CTTGTGTTATAAAGTATTTA+AGG - Chr1:78496550-78496569 MsG0180004469.01.T01:CDS 20.0%
!!! CTTTTAATTTATTTATCGAG+AGG - Chr1:78496792-78496811 MsG0180004469.01.T01:CDS 20.0%
!!! TGTGTTATAAAGTATTTAAG+GGG - Chr1:78496552-78496571 MsG0180004469.01.T01:CDS 20.0%
!!! TTATTGTGGTTTTATGTTAA+TGG - Chr1:78497012-78497031 MsG0180004469.01.T01:CDS 20.0%
! ACATAAAACCACAATAACAT+AGG + Chr1:78497009-78497028 None:intergenic 25.0%
! AGTGCATGTTAAATCAAAAT+CGG + Chr1:78497677-78497696 None:intergenic 25.0%
! CATTATATGCTATGTTACAT+AGG + Chr1:78495593-78495612 None:intergenic 25.0%
! GAGAATCATCATACATTTAT+TGG + Chr1:78497878-78497897 None:intergenic 25.0%
! GTGTATAAAATAGCCTATTT+AGG - Chr1:78498425-78498444 MsG0180004469.01.T01:intron 25.0%
! GTTTCTTCCTTTCTTAAAAA+AGG + Chr1:78496260-78496279 None:intergenic 25.0%
! TATGCAACCATTAAGTATTT+GGG + Chr1:78496622-78496641 None:intergenic 25.0%
! TATTTATCGAGAGGAAAATT+GGG - Chr1:78496801-78496820 MsG0180004469.01.T01:CDS 25.0%
! TGACAACACTAATTAGAATA+TGG - Chr1:78495954-78495973 MsG0180004469.01.T01:intron 25.0%
! TTATTTATCGAGAGGAAAAT+TGG - Chr1:78496800-78496819 MsG0180004469.01.T01:CDS 25.0%
!! AAAATTGCTGCTTATACTTT+AGG - Chr1:78497183-78497202 MsG0180004469.01.T01:CDS 25.0%
!! ACTGTATGTACATTTTATTG+AGG - Chr1:78496164-78496183 MsG0180004469.01.T01:CDS 25.0%
!! CATAATTTTCAACTTGTGAA+TGG - Chr1:78496589-78496608 MsG0180004469.01.T01:CDS 25.0%
!! GTTTTATGTTAATGGTGTAT+AGG - Chr1:78497020-78497039 MsG0180004469.01.T01:CDS 25.0%
!! TAAAGTATAAGCAGCAATTT+TGG + Chr1:78497184-78497203 None:intergenic 25.0%
!! TTTTCAAACAATGGATATAG+TGG - Chr1:78495902-78495921 MsG0180004469.01.T01:intron 25.0%
!! TTTTGTTCACTGTCTTAAAA+CGG - Chr1:78495795-78495814 MsG0180004469.01.T01:intron 25.0%
!!! ATGTTTTTTGAAGTTTTGGT+TGG - Chr1:78498501-78498520 MsG0180004469.01.T01:intron 25.0%
!!! CATAATAGTGAAGTTTTATG+TGG - Chr1:78496723-78496742 MsG0180004469.01.T01:CDS 25.0%
!!! TCATTTTCAATGTTAGTTTG+CGG - Chr1:78498319-78498338 MsG0180004469.01.T01:intron 25.0%
!!! TGTGATGTTTTTTGAAGTTT+TGG - Chr1:78498497-78498516 MsG0180004469.01.T01:intron 25.0%
!!! TTTCTGTCCTTTTTTAAGAA+AGG - Chr1:78496250-78496269 MsG0180004469.01.T01:CDS 25.0%
AAAAAGTCGAAAACTAGAGT+TGG + Chr1:78495408-78495427 None:intergenic 30.0%
AAAAGCAGGTAACTCAAAAA+GGG + Chr1:78498716-78498735 None:intergenic 30.0%
AAAATGGTGAATTACGCATA+CGG - Chr1:78495303-78495322 MsG0180004469.01.T01:CDS 30.0%
AAACTAAGTGTCTCTTTAAC+TGG - Chr1:78497505-78497524 MsG0180004469.01.T01:intron 30.0%
AAATTGTTGTATTCTCGTAC+CGG - Chr1:78495536-78495555 MsG0180004469.01.T01:intron 30.0%
AACTGGAGAGTTTGATTATT+TGG - Chr1:78496137-78496156 MsG0180004469.01.T01:CDS 30.0%
ATAAGAATAACTGAGTAGCT+GGG + Chr1:78497440-78497459 None:intergenic 30.0%
ATCATCATACATTTATTGGC+AGG + Chr1:78497874-78497893 None:intergenic 30.0%
ATGATTTCATAGGTATGAGT+CGG - Chr1:78496335-78496354 MsG0180004469.01.T01:intron 30.0%
ATGTTAATGGTGTATAGGAA+TGG - Chr1:78497025-78497044 MsG0180004469.01.T01:CDS 30.0%
CTGCTGAATCCTTAAAATTA+TGG + Chr1:78499633-78499652 None:intergenic 30.0%
CTTTCTTGGTAAAAAGTTCA+AGG - Chr1:78497236-78497255 MsG0180004469.01.T01:CDS 30.0%
GAAGCTAAAGAGATAACAAA+AGG + Chr1:78494830-78494849 None:intergenic 30.0%
GAGTCAACTAAAAAATACAC+AGG + Chr1:78499662-78499681 None:intergenic 30.0%
GCAGCTTCATTATAGATTAA+TGG - Chr1:78499716-78499735 MsG0180004469.01.T01:five_prime_UTR 30.0%
GTATGCAACCATTAAGTATT+TGG + Chr1:78496623-78496642 None:intergenic 30.0%
TAAAAGCAGGTAACTCAAAA+AGG + Chr1:78498717-78498736 None:intergenic 30.0%
TAAGTATACAGACTTTCTGT+TGG - Chr1:78497092-78497111 MsG0180004469.01.T01:CDS 30.0%
TATAAGAATAACTGAGTAGC+TGG + Chr1:78497441-78497460 None:intergenic 30.0%
TATGCTATGTTACATAGGTA+CGG + Chr1:78495588-78495607 None:intergenic 30.0%
TGTCTTAAAACGGAGAAAAA+CGG - Chr1:78495805-78495824 MsG0180004469.01.T01:intron 30.0%
TGTTAATGGTGTATAGGAAT+GGG - Chr1:78497026-78497045 MsG0180004469.01.T01:CDS 30.0%
TTAGAATATGGTTGTTGTCT+TGG - Chr1:78495966-78495985 MsG0180004469.01.T01:intron 30.0%
TTCGAAATGAGATTGAAGAA+CGG + Chr1:78494670-78494689 None:intergenic 30.0%
! AAAATAGCCTATTTAGGACT+TGG - Chr1:78498431-78498450 MsG0180004469.01.T01:intron 30.0%
! ACTGCTGTTCCATAATTTTA+AGG - Chr1:78499621-78499640 MsG0180004469.01.T01:CDS 30.0%
! ATAATCAAACTCTCCAGTTT+TGG + Chr1:78496136-78496155 None:intergenic 30.0%
! CATTATCGCTAATCAAGTTT+TGG - Chr1:78494967-78494986 MsG0180004469.01.T01:three_prime_UTR 30.0%
! CATTTTATTGAGGTGAGTTT+TGG - Chr1:78496174-78496193 MsG0180004469.01.T01:CDS 30.0%
! CTTGAACTTTTTACCAAGAA+AGG + Chr1:78497238-78497257 None:intergenic 30.0%
! TAAAGTATTTAAGGGGAAGA+AGG - Chr1:78496559-78496578 MsG0180004469.01.T01:CDS 30.0%
! TTTCAAATGCTTGTTAGATC+AGG - Chr1:78499554-78499573 MsG0180004469.01.T01:CDS 30.0%
! TTTGTTATCTCTTTAGCTTC+CGG - Chr1:78494830-78494849 MsG0180004469.01.T01:three_prime_UTR 30.0%
! TTTTAGCCTAGCATGAATTT+GGG + Chr1:78499300-78499319 None:intergenic 30.0%
!! ATAGTGAAGTTTTATGTGGT+TGG - Chr1:78496727-78496746 MsG0180004469.01.T01:CDS 30.0%
!! CATTGAAAAGCTTTATTACC+AGG - Chr1:78497543-78497562 MsG0180004469.01.T01:intron 30.0%
!! TAAAGGTAAGGTATTTTTCC+CGG - Chr1:78496451-78496470 MsG0180004469.01.T01:CDS 30.0%
!! TTTTTAGCCTAGCATGAATT+TGG + Chr1:78499301-78499320 None:intergenic 30.0%
!!! GCAATTTTGGTTTTCTCAAA+TGG + Chr1:78497171-78497190 None:intergenic 30.0%
!!! TTGAAGTTTTGGTTGGAATA+GGG - Chr1:78498508-78498527 MsG0180004469.01.T01:intron 30.0%
!!! TTTGAAGTTTTGGTTGGAAT+AGG - Chr1:78498507-78498526 MsG0180004469.01.T01:intron 30.0%
AAAAAAACCTGCCCCAATTA+AGG + Chr1:78496486-78496505 None:intergenic 35.0%
AAAAATCACAAGCAACAGGT+AGG + Chr1:78495779-78495798 None:intergenic 35.0%
AAAACGGAGAAAAACGGTAT+CGG - Chr1:78495811-78495830 MsG0180004469.01.T01:intron 35.0%
AAAATCACAAGCAACAGGTA+GGG + Chr1:78495778-78495797 None:intergenic 35.0%
AAACACGAATGAAGAACTCA+TGG + Chr1:78498687-78498706 None:intergenic 35.0%
AAATAGCTGTTATAGCGTTG+CGG - Chr1:78495080-78495099 MsG0180004469.01.T01:CDS 35.0%
AAATCAGCTGGCCAAAAATT+AGG + Chr1:78498850-78498869 None:intergenic 35.0%
AACCACTAGAGAAATCAGAA+TGG + Chr1:78499449-78499468 None:intergenic 35.0%
AACTGTTTACATTGGAGACT+CGG - Chr1:78499017-78499036 MsG0180004469.01.T01:intron 35.0%
AAGCATGGGTACTTGTAAAA+TGG - Chr1:78495287-78495306 MsG0180004469.01.T01:CDS 35.0%
AATAATAGGGTTGTTGAGTC+AGG - Chr1:78498057-78498076 MsG0180004469.01.T01:intron 35.0%
AATACAAATACACAAGCAGG+TGG - Chr1:78499344-78499363 MsG0180004469.01.T01:intron 35.0%
AATATGGTTGTTGTCTTGGA+TGG - Chr1:78495970-78495989 MsG0180004469.01.T01:intron 35.0%
ACAAAGAAAGCTCTTCCAAT+TGG - Chr1:78499181-78499200 MsG0180004469.01.T01:intron 35.0%
ACAGTTCGTTACTGCAAAAT+CGG + Chr1:78495861-78495880 None:intergenic 35.0%
ATAATAGGGTTGTTGAGTCA+GGG - Chr1:78498058-78498077 MsG0180004469.01.T01:intron 35.0%
ATACTCCTCTGTATACTGTT+TGG + Chr1:78497827-78497846 None:intergenic 35.0%
ATAGGCTGTATGAGTGAAAA+GGG + Chr1:78496991-78497010 None:intergenic 35.0%
ATCACAGATATGCTAAAAGC+AGG + Chr1:78498730-78498749 None:intergenic 35.0%
ATCATATAATCTCCGAAGCA+TGG - Chr1:78495272-78495291 MsG0180004469.01.T01:CDS 35.0%
ATGCTATGTTACATAGGTAC+GGG + Chr1:78495587-78495606 None:intergenic 35.0%
ATTCGAGCTATTTGATCTTC+AGG + Chr1:78497766-78497785 None:intergenic 35.0%
ATTGAAGGACTGAAAAGTTC+TGG - Chr1:78497132-78497151 MsG0180004469.01.T01:CDS 35.0%
ATTGCCTTCTAAATGCTGAT+TGG - Chr1:78496661-78496680 MsG0180004469.01.T01:CDS 35.0%
CAAAATATCAAAGTGCGTCA+AGG - Chr1:78495146-78495165 MsG0180004469.01.T01:CDS 35.0%
CAACAATCCAAGTCCTAAAT+AGG + Chr1:78498441-78498460 None:intergenic 35.0%
CCAATATATTACGAAAAGCC+TGG + Chr1:78498969-78498988 None:intergenic 35.0%
CGAGAACTCAGCAAATAATA+GGG - Chr1:78498044-78498063 MsG0180004469.01.T01:intron 35.0%
GAACAAAAATCACAAGCAAC+AGG + Chr1:78495783-78495802 None:intergenic 35.0%
GAATACTGCGTTACAATTTG+CGG - Chr1:78495191-78495210 MsG0180004469.01.T01:CDS 35.0%
GAGAACTAAATCACATCTCA+TGG + Chr1:78498273-78498292 None:intergenic 35.0%
GTATGAAAGAACATGCACAT+TGG + Chr1:78498196-78498215 None:intergenic 35.0%
GTTAATGGTGTATAGGAATG+GGG - Chr1:78497027-78497046 MsG0180004469.01.T01:CDS 35.0%
TAAAAGTTCTTGTTCCCCAT+CGG + Chr1:78496778-78496797 None:intergenic 35.0%
TAACCAAGCCAGAAAACAAT+GGG + Chr1:78499143-78499162 None:intergenic 35.0%
TAAGAATAACTGAGTAGCTG+GGG + Chr1:78497439-78497458 None:intergenic 35.0%
TAGTATCAAAGCAACCACAA+AGG + Chr1:78497371-78497390 None:intergenic 35.0%
TAGTGTGATGCAAAGCAATT+GGG - Chr1:78498636-78498655 MsG0180004469.01.T01:intron 35.0%
TATAGCAATTTCTGCCAAGA+TGG + Chr1:78497716-78497735 None:intergenic 35.0%
TCATACAGCCTATGTTATTG+TGG - Chr1:78496998-78497017 MsG0180004469.01.T01:CDS 35.0%
TCATATAATCTCCGAAGCAT+GGG - Chr1:78495273-78495292 MsG0180004469.01.T01:CDS 35.0%
TCCATCTCAATTAAATCAGC+TGG + Chr1:78498862-78498881 None:intergenic 35.0%
TCGAGAACTCAGCAAATAAT+AGG - Chr1:78498043-78498062 MsG0180004469.01.T01:intron 35.0%
TCTATCCAAACAGTATACAG+AGG - Chr1:78497819-78497838 MsG0180004469.01.T01:intron 35.0%
TCTCTGCATTCTTTCTACTA+TGG - Chr1:78497894-78497913 MsG0180004469.01.T01:CDS 35.0%
TCTTTACACAGTCTCTAGTT+GGG - Chr1:78499221-78499240 MsG0180004469.01.T01:intron 35.0%
TGAGTTAATACTGTGCTCTT+TGG + Chr1:78497064-78497083 None:intergenic 35.0%
TGCAATACAAATACACAAGC+AGG - Chr1:78499341-78499360 MsG0180004469.01.T01:intron 35.0%
TGGAACGATCTTGAATTGAA+AGG + Chr1:78494701-78494720 None:intergenic 35.0%
TGGTTGCATACTAACAGTAA+AGG - Chr1:78496632-78496651 MsG0180004469.01.T01:CDS 35.0%
TGTGATTCCTAGCATATCTT+GGG - Chr1:78498744-78498763 MsG0180004469.01.T01:intron 35.0%
TTAACCAAGCCAGAAAACAA+TGG + Chr1:78499144-78499163 None:intergenic 35.0%
TTAGTGTGATGCAAAGCAAT+TGG - Chr1:78498635-78498654 MsG0180004469.01.T01:intron 35.0%
TTCTTTACACAGTCTCTAGT+TGG - Chr1:78499220-78499239 MsG0180004469.01.T01:intron 35.0%
! ACATAGAGAAGATGGATTCA+CGG + Chr1:78494802-78494821 None:intergenic 35.0%
! AGAATCGATCTTCAAGTTAC+CGG + Chr1:78494852-78494871 None:intergenic 35.0%
! CAGGTGGCTAATTTTATAAG+CGG - Chr1:78499360-78499379 MsG0180004469.01.T01:intron 35.0%
! CCAGGCTTTTCGTAATATAT+TGG - Chr1:78498966-78498985 MsG0180004469.01.T01:intron 35.0%
! CTATTTAGGACTTGGATTGT+TGG - Chr1:78498439-78498458 MsG0180004469.01.T01:intron 35.0%
! GTCTCTCTTATTTCTCTTTC+AGG - Chr1:78499399-78499418 MsG0180004469.01.T01:CDS 35.0%
! GTGTTGTACTGGTATTTAGT+AGG - Chr1:78499596-78499615 MsG0180004469.01.T01:CDS 35.0%
! GTTTTCTCAGTAACCAAAAC+TGG - Chr1:78496120-78496139 MsG0180004469.01.T01:CDS 35.0%
! TAGTTTGTCGAGCAATTCTT+CGG + Chr1:78497491-78497510 None:intergenic 35.0%
! TCATTTGTCCCATTGTTTTC+TGG - Chr1:78499132-78499151 MsG0180004469.01.T01:intron 35.0%
! TGTCTGAAATTTCTCATTCC+TGG + Chr1:78499528-78499547 None:intergenic 35.0%
! TTTTACAAGTACCCATGCTT+CGG + Chr1:78495287-78495306 None:intergenic 35.0%
!! ATGATTGGAAGGGTTTTGAT+AGG + Chr1:78494647-78494666 None:intergenic 35.0%
!! GTTGAGGAAGAATGTTTTAG+AGG - Chr1:78496404-78496423 MsG0180004469.01.T01:intron 35.0%
!! TATGATGGATCTGTTTCTAC+CGG - Chr1:78498904-78498923 MsG0180004469.01.T01:intron 35.0%
!! TGAAGTGCATGCTTTTGTTT+TGG - Chr1:78499245-78499264 MsG0180004469.01.T01:intron 35.0%
!! TGATTGGAAGGGTTTTGATA+GGG + Chr1:78494646-78494665 None:intergenic 35.0%
!!! GAAGTGCATGCTTTTGTTTT+GGG - Chr1:78499246-78499265 MsG0180004469.01.T01:intron 35.0%
AAAAAGTAGTGCAAGGGAGA+TGG + Chr1:78496233-78496252 None:intergenic 40.0%
AAAAGTAGTGCAAGGGAGAT+GGG + Chr1:78496232-78496251 None:intergenic 40.0%
AACACCAAATTGTGTCCCTA+TGG + Chr1:78499112-78499131 None:intergenic 40.0%
AAGAGAAAGCAGACCTAATG+AGG + Chr1:78498233-78498252 None:intergenic 40.0%
AAGCAACCACAAAGGCTATA+TGG + Chr1:78497363-78497382 None:intergenic 40.0%
ACATGAGTCTCCTTTCATCT+CGG - Chr1:78498465-78498484 MsG0180004469.01.T01:intron 40.0%
ACCACAAAGGCTATATGGTA+TGG + Chr1:78497358-78497377 None:intergenic 40.0%
ACTATAGCACCCTTGACTAA+AGG - Chr1:78497616-78497635 MsG0180004469.01.T01:intron 40.0%
AGAAAGCTCTTCCAATTGGA+AGG - Chr1:78499185-78499204 MsG0180004469.01.T01:intron 40.0%
AGAACCATAGGGACACAATT+TGG - Chr1:78499105-78499124 MsG0180004469.01.T01:intron 40.0%
AGAGAAATAAGAGAGACAGC+AGG + Chr1:78499396-78499415 None:intergenic 40.0%
AGGACAGAAAAAGTAGTGCA+AGG + Chr1:78496240-78496259 None:intergenic 40.0%
AGGGTTATGTCCTTTAGTCA+AGG + Chr1:78497629-78497648 None:intergenic 40.0%
AGGTTTGTCATGTTGACAGT+AGG - Chr1:78497331-78497350 MsG0180004469.01.T01:intron 40.0%
AGTAAGTGCAACTGAACTTG+TGG - Chr1:78496018-78496037 MsG0180004469.01.T01:intron 40.0%
AGTGTGATGCAAAGCAATTG+GGG - Chr1:78498637-78498656 MsG0180004469.01.T01:intron 40.0%
AGTTCAAGCCTTAGAACCAT+AGG - Chr1:78499093-78499112 MsG0180004469.01.T01:intron 40.0%
ATCGACAACTATTCCTCTGA+TGG - Chr1:78497303-78497322 MsG0180004469.01.T01:intron 40.0%
ATGAAAAGCTCCGAGATGAA+AGG + Chr1:78498478-78498497 None:intergenic 40.0%
ATGACTCACTGGTAAAGGTA+AGG - Chr1:78496439-78496458 MsG0180004469.01.T01:CDS 40.0%
ATTAGGTCTGCTTTCTCTTC+AGG - Chr1:78498234-78498253 MsG0180004469.01.T01:intron 40.0%
ATTCACAATCACAGTGAAGC+TGG - Chr1:78494746-78494765 MsG0180004469.01.T01:three_prime_UTR 40.0%
ATTCCTAGCATATCTTGGGT+TGG - Chr1:78498748-78498767 MsG0180004469.01.T01:intron 40.0%
CAAAATCGGCCACAACAAAA+GGG + Chr1:78495847-78495866 None:intergenic 40.0%
CACCTTCTTAACAATGTCAC+CGG + Chr1:78498926-78498945 None:intergenic 40.0%
CATAGGCTGTATGAGTGAAA+AGG + Chr1:78496992-78497011 None:intergenic 40.0%
CCATAGAAACCGAATCCAAA+TGG - Chr1:78494718-78494737 MsG0180004469.01.T01:three_prime_UTR 40.0%
CTATTTCAAGCTTCATTGCC+TGG + Chr1:78497564-78497583 None:intergenic 40.0%
CTGTGATTCCTAGCATATCT+TGG - Chr1:78498743-78498762 MsG0180004469.01.T01:intron 40.0%
GAAAGCTCTTCCAATTGGAA+GGG - Chr1:78499186-78499205 MsG0180004469.01.T01:intron 40.0%
GAACATCTTGAGCGATGTAA+TGG + Chr1:78494880-78494899 None:intergenic 40.0%
GAGATTGAAGAACGGATGAT+TGG + Chr1:78494662-78494681 None:intergenic 40.0%
GAGTCCAATCAGCATTTAGA+AGG + Chr1:78496668-78496687 None:intergenic 40.0%
GATGTTGCAATTCAGAGACA+TGG - Chr1:78499421-78499440 MsG0180004469.01.T01:CDS 40.0%
GATTGTGAATTGCTGCCATT+TGG + Chr1:78494736-78494755 None:intergenic 40.0%
GCAGATGTAGGAATTGTGAT+TGG - Chr1:78499066-78499085 MsG0180004469.01.T01:intron 40.0%
GCCAAATCTTCGCTGTTAAA+CGG - Chr1:78498770-78498789 MsG0180004469.01.T01:intron 40.0%
GCTAACGAGTTCAGTTATGA+TGG - Chr1:78498889-78498908 MsG0180004469.01.T01:intron 40.0%
GGACAGAAAAAGTAGTGCAA+GGG + Chr1:78496239-78496258 None:intergenic 40.0%
GGGTTATGTCCTTTAGTCAA+GGG + Chr1:78497628-78497647 None:intergenic 40.0%
GGTTTGTCATGTTGACAGTA+GGG - Chr1:78497332-78497351 MsG0180004469.01.T01:intron 40.0%
GTTCAAGCCTTAGAACCATA+GGG - Chr1:78499094-78499113 MsG0180004469.01.T01:intron 40.0%
TAATACTGTGCTCTTTGGCA+AGG + Chr1:78497059-78497078 None:intergenic 40.0%
TAATAGGGTTGTTGAGTCAG+GGG - Chr1:78498059-78498078 MsG0180004469.01.T01:intron 40.0%
TACCGGTGACATTGTTAAGA+AGG - Chr1:78498921-78498940 MsG0180004469.01.T01:intron 40.0%
TACTGTCAACATGACAAACC+TGG + Chr1:78497332-78497351 None:intergenic 40.0%
TAGGCTGTATGAGTGAAAAG+GGG + Chr1:78496990-78497009 None:intergenic 40.0%
TCCAATTGGAAGGGTTTATC+TGG - Chr1:78499195-78499214 MsG0180004469.01.T01:intron 40.0%
TCCGTTTAACAGCGAAGATT+TGG + Chr1:78498774-78498793 None:intergenic 40.0%
TGAAGAACGGATGATTGGAA+GGG + Chr1:78494657-78494676 None:intergenic 40.0%
TGCATGTTCTTTCATACTGC+TGG - Chr1:78498199-78498218 MsG0180004469.01.T01:intron 40.0%
TGCCATTCTGATTTCTCTAG+TGG - Chr1:78499444-78499463 MsG0180004469.01.T01:CDS 40.0%
TGTCTACTTGAAGCAGATGT+AGG - Chr1:78499054-78499073 MsG0180004469.01.T01:intron 40.0%
TTGAAGAACGGATGATTGGA+AGG + Chr1:78494658-78494677 None:intergenic 40.0%
TTGATCTTCAGGCTGATTGT+CGG + Chr1:78497755-78497774 None:intergenic 40.0%
TTGTCGATCCACTTGCAATA+CGG + Chr1:78497291-78497310 None:intergenic 40.0%
TTTATACACCCACCAAGACT+AGG + Chr1:78498414-78498433 None:intergenic 40.0%
TTTCAACTTGTGAATGGGAC+TGG - Chr1:78496595-78496614 MsG0180004469.01.T01:CDS 40.0%
TTTCCACTGCAAATCACACA+AGG + Chr1:78497975-78497994 None:intergenic 40.0%
TTTCTCATTCCTGGCATGAT+TGG + Chr1:78499519-78499538 None:intergenic 40.0%
! AGGAGTGTACATAGAGAAGA+TGG + Chr1:78494810-78494829 None:intergenic 40.0%
! AGGTATTTTTCCCGGTAACA+TGG - Chr1:78496459-78496478 MsG0180004469.01.T01:CDS 40.0%
! ATTGTGTCCCTATGGTTCTA+AGG + Chr1:78499104-78499123 None:intergenic 40.0%
! CACAACAAAAGGGTATAGGT+AGG + Chr1:78495837-78495856 None:intergenic 40.0%
! CCATTTGGATTCGGTTTCTA+TGG + Chr1:78494721-78494740 None:intergenic 40.0%
! CGTCAAGGATTTTGCGATTT+CGG - Chr1:78495161-78495180 MsG0180004469.01.T01:CDS 40.0%
! CTACCTATACCCTTTTGTTG+TGG - Chr1:78495835-78495854 MsG0180004469.01.T01:intron 40.0%
! GAATTGCTGCCATTTGGATT+CGG + Chr1:78494730-78494749 None:intergenic 40.0%
! GACTGGTCCCAAATACTTAA+TGG - Chr1:78496612-78496631 MsG0180004469.01.T01:CDS 40.0%
! GCCAGCTGATTTAATTGAGA+TGG - Chr1:78498858-78498877 MsG0180004469.01.T01:intron 40.0%
! GGTATTTTTCCCGGTAACAT+GGG - Chr1:78496460-78496479 MsG0180004469.01.T01:CDS 40.0%
!! CAGACTTTGAAGTGTTGTAC+TGG - Chr1:78499585-78499604 MsG0180004469.01.T01:CDS 40.0%
!! GCTGTTAAACGGATTGAAGT+TGG - Chr1:78498781-78498800 MsG0180004469.01.T01:intron 40.0%
!! TGTTGATTCATCTGCCATCT+TGG - Chr1:78497699-78497718 MsG0180004469.01.T01:intron 40.0%
!! TTAGTCAAGGGTGCTATAGT+TGG + Chr1:78497616-78497635 None:intergenic 40.0%
AAAAGCCTGGACCTTGTCAA+TGG + Chr1:78498956-78498975 None:intergenic 45.0%
AAAGCCTGGACCTTGTCAAT+GGG + Chr1:78498955-78498974 None:intergenic 45.0%
AATGGATATAGTGGCGCCAT+AGG - Chr1:78495911-78495930 MsG0180004469.01.T01:intron 45.0%
ACAAACCTGGAAACCATCAG+AGG + Chr1:78497319-78497338 None:intergenic 45.0%
ATAGAAGATGTAAAGCGCGC+TGG - Chr1:78498099-78498118 MsG0180004469.01.T01:intron 45.0%
ATCACGAGACGATCTTCTTC+AGG + Chr1:78497649-78497668 None:intergenic 45.0%
ATGAGGCTGTATGCCTTTCT+TGG - Chr1:78497222-78497241 MsG0180004469.01.T01:CDS 45.0%
ATGGTTGTTGTCTTGGATGG+TGG - Chr1:78495973-78495992 MsG0180004469.01.T01:intron 45.0%
ATTGTGTCCATTTCGCACTC+TGG - Chr1:78498374-78498393 MsG0180004469.01.T01:intron 45.0%
CAATTAAGGCCCATGTTACC+GGG + Chr1:78496472-78496491 None:intergenic 45.0%
CACGAATGAAGAACTCATGG+TGG + Chr1:78498684-78498703 None:intergenic 45.0%
CATCGAGTGGATGAAACACA+CGG + Chr1:78494600-78494619 None:intergenic 45.0%
CATCTTGAGCGATGTAATGG+CGG + Chr1:78494877-78494896 None:intergenic 45.0%
CCAATTAAGGCCCATGTTAC+CGG + Chr1:78496473-78496492 None:intergenic 45.0%
CGGTAACATGGGCCTTAATT+GGG - Chr1:78496471-78496490 MsG0180004469.01.T01:CDS 45.0%
CGGTGACATTGTTAAGAAGG+TGG - Chr1:78498924-78498943 MsG0180004469.01.T01:intron 45.0%
CTATTCCTCTGATGGTTTCC+AGG - Chr1:78497311-78497330 MsG0180004469.01.T01:intron 45.0%
GAATGTTGTCTTCTGACCTC+AGG - Chr1:78497782-78497801 MsG0180004469.01.T01:intron 45.0%
GAGCGTTTGATTCTTCAGGA+TGG - Chr1:78498123-78498142 MsG0180004469.01.T01:intron 45.0%
GATGACGATGACGATAAGCT+TGG - Chr1:78496372-78496391 MsG0180004469.01.T01:intron 45.0%
GATGCATGACTCACTGGTAA+AGG - Chr1:78496434-78496453 MsG0180004469.01.T01:intron 45.0%
GCAAAATCGGCCACAACAAA+AGG + Chr1:78495848-78495867 None:intergenic 45.0%
GCCAGATAAACCCTTCCAAT+TGG + Chr1:78499199-78499218 None:intergenic 45.0%
GCCATACCATATAGCCTTTG+TGG - Chr1:78497354-78497373 MsG0180004469.01.T01:intron 45.0%
GCTATAGTTGGCTGAAAGAG+TGG + Chr1:78497604-78497623 None:intergenic 45.0%
GGTAACATGGGCCTTAATTG+GGG - Chr1:78496472-78496491 MsG0180004469.01.T01:CDS 45.0%
GTACAGTACCCGGTACAATA+CGG + Chr1:78495565-78495584 None:intergenic 45.0%
GTTCTTTCATACTGCTGGTG+TGG - Chr1:78498204-78498223 MsG0180004469.01.T01:intron 45.0%
GTTGAGTCAGGGGTTCTTAA+GGG - Chr1:78498069-78498088 MsG0180004469.01.T01:intron 45.0%
TACAGTACCCGGTACAATAC+GGG + Chr1:78495564-78495583 None:intergenic 45.0%
TCACGAGACGATCTTCTTCA+GGG + Chr1:78497648-78497667 None:intergenic 45.0%
TGAGTACTTTCTTCGAGGTC+TGG + Chr1:78497267-78497286 None:intergenic 45.0%
TGGTGTATAGGAATGGGGAT+TGG - Chr1:78497032-78497051 MsG0180004469.01.T01:CDS 45.0%
TGTCGATCCACTTGCAATAC+GGG + Chr1:78497290-78497309 None:intergenic 45.0%
TGTTGAGTCAGGGGTTCTTA+AGG - Chr1:78498068-78498087 MsG0180004469.01.T01:intron 45.0%
TGTTTACATTGGAGACTCGG+TGG - Chr1:78499020-78499039 MsG0180004469.01.T01:intron 45.0%
TTCTGACCTCAGGAACACAT+GGG - Chr1:78497792-78497811 MsG0180004469.01.T01:intron 45.0%
TTGTGTCCATTTCGCACTCT+GGG - Chr1:78498375-78498394 MsG0180004469.01.T01:intron 45.0%
! ACTGCTTCTGGGAAGATTGA+AGG - Chr1:78497117-78497136 MsG0180004469.01.T01:CDS 45.0%
! GTTTACATTGGAGACTCGGT+GGG - Chr1:78499021-78499040 MsG0180004469.01.T01:intron 45.0%
! TAGTGGTTCTTCGAAGCATC+TGG - Chr1:78499461-78499480 MsG0180004469.01.T01:CDS 45.0%
! TCAGGCTGATTGTCGGATTT+TGG + Chr1:78497748-78497767 None:intergenic 45.0%
! TGACCTTGTGTGATTTGCAG+TGG - Chr1:78497969-78497988 MsG0180004469.01.T01:intron 45.0%
! TTCTGTTGGCTACTGCTTCT+GGG - Chr1:78497106-78497125 MsG0180004469.01.T01:CDS 45.0%
! TTTCTGTTGGCTACTGCTTC+TGG - Chr1:78497105-78497124 MsG0180004469.01.T01:CDS 45.0%
!! GGAAGGGTTTTGATAGGGTT+TGG + Chr1:78494641-78494660 None:intergenic 45.0%
!! GGGTTTTGATAGGGTTTGGA+AGG + Chr1:78494637-78494656 None:intergenic 45.0%
!! TGGAGAGCGTTTGATTCTTC+AGG - Chr1:78498119-78498138 MsG0180004469.01.T01:intron 45.0%
!!! TGTCCCATTGTTTTCTGGCT+TGG - Chr1:78499137-78499156 MsG0180004469.01.T01:intron 45.0%
AAGGCATACAGCCTCATGCA+AGG + Chr1:78497219-78497238 None:intergenic 50.0%
ACGGGTGAGTACTTTCTTCG+AGG + Chr1:78497272-78497291 None:intergenic 50.0%
AGCTTGGACTCTCTCAGTTG+AGG - Chr1:78496388-78496407 MsG0180004469.01.T01:intron 50.0%
ATAGGTACGGGTACAGTACC+CGG + Chr1:78495575-78495594 None:intergenic 50.0%
ATCGGAAAGGATGTCCCTCA+GGG + Chr1:78496760-78496779 None:intergenic 50.0%
ATTCCGCTACGCAACACCTA+TGG + Chr1:78495930-78495949 None:intergenic 50.0%
CATGCGCCCAAATTCATGCT+AGG - Chr1:78499291-78499310 MsG0180004469.01.T01:intron 50.0%
CCGGTAACATGGGCCTTAAT+TGG - Chr1:78496470-78496489 MsG0180004469.01.T01:CDS 50.0%
CTCATTCCTGGCATGATTGG+AGG + Chr1:78499516-78499535 None:intergenic 50.0%
CTTCTGACCTCAGGAACACA+TGG - Chr1:78497791-78497810 MsG0180004469.01.T01:intron 50.0%
GACAGGAGTCATCCTAGTCT+TGG - Chr1:78498399-78498418 MsG0180004469.01.T01:intron 50.0%
GCTGAAGATGCATGACTCAC+TGG - Chr1:78496428-78496447 MsG0180004469.01.T01:intron 50.0%
GTACTCACCCGTATTGCAAG+TGG - Chr1:78497280-78497299 MsG0180004469.01.T01:intron 50.0%
GTTCTTGTTCCCCATCGGAA+AGG + Chr1:78496773-78496792 None:intergenic 50.0%
TACCGGTACCCGTATTGTAC+CGG - Chr1:78495553-78495572 MsG0180004469.01.T01:intron 50.0%
TCATCCACTCGATGCGCATA+CGG - Chr1:78494606-78494625 MsG0180004469.01.T01:three_prime_UTR 50.0%
TCTGACCTCAGGAACACATG+GGG - Chr1:78497793-78497812 MsG0180004469.01.T01:intron 50.0%
TGAGGGACATCCTTTCCGAT+GGG - Chr1:78496760-78496779 MsG0180004469.01.T01:CDS 50.0%
TGGCCAACCCAAGATATGCT+AGG + Chr1:78498754-78498773 None:intergenic 50.0%
TGGTTGGAGTATGACCCTGA+GGG - Chr1:78496743-78496762 MsG0180004469.01.T01:CDS 50.0%
! CGGCCACAACAAAAGGGTAT+AGG + Chr1:78495841-78495860 None:intergenic 50.0%
!! AGGAGTCATCCTAGTCTTGG+TGG - Chr1:78498402-78498421 MsG0180004469.01.T01:intron 50.0%
!! GGAGTCATCCTAGTCTTGGT+GGG - Chr1:78498403-78498422 MsG0180004469.01.T01:intron 50.0%
ACATGGGCCTTAATTGGGGC+AGG - Chr1:78496476-78496495 MsG0180004469.01.T01:CDS 55.0%
ACCCGGTACAATACGGGTAC+CGG + Chr1:78495558-78495577 None:intergenic 55.0%
ACCGGTACCCGTATTGTACC+GGG - Chr1:78495554-78495573 MsG0180004469.01.T01:intron 55.0%
CAGCCTCATGCAAGGAGTCA+TGG + Chr1:78497211-78497230 None:intergenic 55.0%
CATCGGAAAGGATGTCCCTC+AGG + Chr1:78496761-78496780 None:intergenic 55.0%
CGAGTGGATGAAACACACGG+CGG + Chr1:78494597-78494616 None:intergenic 55.0%
CTGAGGGACATCCTTTCCGA+TGG - Chr1:78496759-78496778 MsG0180004469.01.T01:CDS 55.0%
CTGTCTCCCAGAGTGCGAAA+TGG + Chr1:78498384-78498403 None:intergenic 55.0%
CTGTCTCCTCCAATCATGCC+AGG - Chr1:78499507-78499526 MsG0180004469.01.T01:CDS 55.0%
GAGAACCCCATGTGTTCCTG+AGG + Chr1:78497801-78497820 None:intergenic 55.0%
GAGAGACAGCAGGCAATCTG+TGG + Chr1:78499386-78499405 None:intergenic 55.0%
GAGGGACATCCTTTCCGATG+GGG - Chr1:78496761-78496780 MsG0180004469.01.T01:CDS 55.0%
GCTGGTGTGGTGACCTCATT+AGG - Chr1:78498217-78498236 MsG0180004469.01.T01:intron 55.0%
GGAGATGGGTAGGTCTTGCA+CGG + Chr1:78496218-78496237 None:intergenic 55.0%
GGTGGAGTCTCCCATTGACA+AGG - Chr1:78498942-78498961 MsG0180004469.01.T01:intron 55.0%
GTAGTGCAAGGGAGATGGGT+AGG + Chr1:78496228-78496247 None:intergenic 55.0%
GTCTCCCATTGACAAGGTCC+AGG - Chr1:78498948-78498967 MsG0180004469.01.T01:intron 55.0%
GTGCCATGACTCCTTGCATG+AGG - Chr1:78497205-78497224 MsG0180004469.01.T01:CDS 55.0%
GTGGTTGGAGTATGACCCTG+AGG - Chr1:78496742-78496761 MsG0180004469.01.T01:CDS 55.0%
! CATTTCGCACTCTGGGAGAC+AGG - Chr1:78498382-78498401 MsG0180004469.01.T01:intron 55.0%
! CTGGACTTGCGAAGCGTTTC+TGG - Chr1:78494765-78494784 MsG0180004469.01.T01:three_prime_UTR 55.0%
ACCACCGTATGCGCATCGAG+TGG + Chr1:78494613-78494632 None:intergenic 60.0%
TCCACTCGATGCGCATACGG+TGG - Chr1:78494609-78494628 MsG0180004469.01.T01:three_prime_UTR 60.0%
! GCGCCATAGGTGTTGCGTAG+CGG - Chr1:78495924-78495943 MsG0180004469.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78494570 78499750 78494570 ID=MsG0180004469.01;Name=MsG0180004469.01
Chr1 mRNA 78494570 78499750 78494570 ID=MsG0180004469.01.T01;Parent=MsG0180004469.01;Name=MsG0180004469.01.T01;_AED=0.43;_eAED=0.43;_QI=47|1|1|1|0.6|0.66|6|475|599
Chr1 exon 78494570 78495457 78494570 ID=MsG0180004469.01.T01:exon:45398;Parent=MsG0180004469.01.T01
Chr1 exon 78496065 78496331 78496065 ID=MsG0180004469.01.T01:exon:45397;Parent=MsG0180004469.01.T01
Chr1 exon 78496437 78496848 78496437 ID=MsG0180004469.01.T01:exon:45396;Parent=MsG0180004469.01.T01
Chr1 exon 78496988 78497278 78496988 ID=MsG0180004469.01.T01:exon:45395;Parent=MsG0180004469.01.T01
Chr1 exon 78497865 78497973 78497865 ID=MsG0180004469.01.T01:exon:45394;Parent=MsG0180004469.01.T01
Chr1 exon 78499396 78499750 78499396 ID=MsG0180004469.01.T01:exon:45393;Parent=MsG0180004469.01.T01
Chr1 five_prime_UTR 78499704 78499750 78499704 ID=MsG0180004469.01.T01:five_prime_utr;Parent=MsG0180004469.01.T01
Chr1 CDS 78499396 78499703 78499396 ID=MsG0180004469.01.T01:cds;Parent=MsG0180004469.01.T01
Chr1 CDS 78497865 78497973 78497865 ID=MsG0180004469.01.T01:cds;Parent=MsG0180004469.01.T01
Chr1 CDS 78496988 78497278 78496988 ID=MsG0180004469.01.T01:cds;Parent=MsG0180004469.01.T01
Chr1 CDS 78496437 78496848 78496437 ID=MsG0180004469.01.T01:cds;Parent=MsG0180004469.01.T01
Chr1 CDS 78496065 78496331 78496065 ID=MsG0180004469.01.T01:cds;Parent=MsG0180004469.01.T01
Chr1 CDS 78495045 78495457 78495045 ID=MsG0180004469.01.T01:cds;Parent=MsG0180004469.01.T01
Chr1 three_prime_UTR 78494570 78495044 78494570 ID=MsG0180004469.01.T01:three_prime_utr;Parent=MsG0180004469.01.T01
Gene Sequence

>MsG0180004469.01.T01

ATGCGCATACGGTGGTTCCTTCCAAACCCTATCAAAACCCTTCCAATCATCCGTTCTTCAATCTCATTTCGAAACTTCGTTCCTTTCAATTCAAGATCGTTCCATAGAAACCGAATCCAAATGGCAGCAATTCACAATCACAGTGAAGCTGGACTTGCGAAGCGTTTCTGGATCAAGTTCAACCGTGAATCCATCTTCTCTATGTACACTCCTTTTGTTATCTCTTTAGCTTCCGGTAACTTGAAGATCGATTCTTTCCGCCATTACATCGCTCAAGATGTTCATTTTCTTCGCGCTTTTGTTCAAGCGTATGAGTCGGCAGAAGACTGTGCTGATGACGATGACGATAAGCTTGGACTCTCTCAGTTGAGGAAGAATGTTTTAGAGGAGCTGAAGATGCATGACTCACTGGTAAAGGAATGGGGATTGGACCTTGCCAAAGAGCACAGTATTAACTCAGCAACAGTTAAGTATACAGACTTTCTGTTGGCTACTGCTTCTGGGAAGATTGAAGGACTGAAAAGTTCTGGTAAACTTGCAACACCATTTGAGAAAACCAAAATTGCTGCTTATACTTTAGGTGCCATGACTCCTTGCATGAGGCTGTATGCCTTTCTTGGTAAAAAGTTCAAGGAACTTCCAGACCTCGAAGAAAGTACTCACCCGTATTGCAAGTGGATCGACAACTATTCCTCTGATGGTTTCCAGGCTTCTGCTCTGCAAACCGAAGAATTGCTCGACAAACTAAGTGTCTCTTTAACTGGCGAAGAACTCGATGTCATTGAAAAGCTTTATTACCAGGCAATGAAGCTTGAAATAGACTTCTTCAATGCTCAACCACTCTTTCAGCCAACTATAGCACCCTTGACTAAAGGACATAACCCTGAAGAAGATCGTCTCGTGATTTTTTCCGATTTTGATTTAACATGCACTGTTGTTGATTCATCTGCCATCTTGGCAGAAATTGCTATAGTGACAGCACCAAAATCCGACAATCAGCCTGAAGATCAAATAGCTCGAATGTTGTCTTCTGACCTCAGGAACACATGGGGTTCTCTATCCAAACAGTATACAGAGGAGTATGAGCAATGTATAGAAAGCATTATGCCTGCCAATAAATTGGAAAATTTTGATTATAAAGAACTGTCTACAGCACTTGAGCAACTTTCAAAGTTCGAGAACTCAGCAAATAATAGGGTTGTTGAGTCAGGGGTTCTTAAGGGTATAAATATAGAAGATGTAAAGCGCGCTGGAGAGCGTTTGATTCTTCAGGATGGTTGCACTGACTTTTTTAAGAGAGTTGTAAAGAATAAAAATTTGAATGCCAATGTGCATGTTCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTGCTTTCTCTTCAGCTGATTTAATTGAGATGGATGTTCATGCTAACGAGTTCAGTTATGATGGATCTGTTTCTACCGGTGACATTGTTAAGAAGGTGGAGTCTCCCATTGACAAGGTCCAGGCTTTTCGTAATATATTGGAAAATTGCAACGATGACAAGAAAAAATTAACTGTTTACATTGGAGACTCGGTGGGTGATTTACTTTGTCTACTTGAAGCAGATGTAGGAATTGTGATTGGTTCAAGTTCAAGCCTTAGAACCATAGGGACACAATTTGGTGTTTCATTTGTCCCATTGTTTTCTGGCTTGGTTAAGAAACAGAAAGAATACAACAAAGAAAGCTCTTCCAATTGGAAGGGTTTATCTGGCATTCTTTACACAGTCTCTAGTTGGGCTGAAGTGCATGCTTTTGTTTTGGGTTGCTAG
Protein sequence

>MsG0180004469.01.T01

MRIRWFLPNPIKTLPIIRSSISFRNFVPFNSRSFHRNRIQMAAIHNHSEAGLAKRFWIKFNRESIFSMYTPFVISLASGNLKIDSFRHYIAQDVHFLRAFVQAYESAEDCADDDDDKLGLSQLRKNVLEELKMHDSLVKEWGLDLAKEHSINSATVKYTDFLLATASGKIEGLKSSGKLATPFEKTKIAAYTLGAMTPCMRLYAFLGKKFKELPDLEESTHPYCKWIDNYSSDGFQASALQTEELLDKLSVSLTGEELDVIEKLYYQAMKLEIDFFNAQPLFQPTIAPLTKGHNPEEDRLVIFSDFDLTCTVVDSSAILAEIAIVTAPKSDNQPEDQIARMLSSDLRNTWGSLSKQYTEEYEQCIESIMPANKLENFDYKELSTALEQLSKFENSANNRVVESGVLKGINIEDVKRAGERLILQDGCTDFFKRVVKNKNLNANVHVLSYCWCGDLIRSAFSSADLIEMDVHANEFSYDGSVSTGDIVKKVESPIDKVQAFRNILENCNDDKKKLTVYIGDSVGDLLCLLEADVGIVIGSSSSLRTIGTQFGVSFVPLFSGLVKKQKEYNKESSSNWKGLSGILYTVSSWAEVHAFVLGC*