AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004593.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004593.01.T01 MTR_1g083230 98.182 385 7 0 1 385 1 385 0.0 788
MsG0180004593.01.T01 MTR_7g108520 73.926 349 80 4 41 382 71 415 0.0 520
MsG0180004593.01.T01 MTR_7g108520 73.926 349 80 4 41 382 71 415 0.0 520
MsG0180004593.01.T01 MTR_3g093590 59.305 403 134 7 4 380 16 414 2.56e-163 464
MsG0180004593.01.T01 MTR_1g088855 62.000 350 128 2 37 382 4 352 1.47e-153 437
MsG0180004593.01.T01 MTR_7g108520 79.098 244 50 1 41 284 71 313 8.44e-142 407
MsG0180004593.01.T01 MTR_4g130190 32.567 261 164 5 36 291 15 268 4.10e-39 140
MsG0180004593.01.T01 MTR_4g130190 32.707 266 167 5 36 296 15 273 8.52e-39 142
MsG0180004593.01.T01 MTR_4g130190 32.707 266 167 5 36 296 15 273 1.19e-38 141
MsG0180004593.01.T01 MTR_4g130190 31.507 219 141 4 83 296 1 215 2.05e-26 107
MsG0180004593.01.T01 MTR_4g130190 31.507 219 141 4 83 296 1 215 2.66e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004593.01.T01 AT3G62770 75.335 373 87 2 13 385 58 425 0.0 571
MsG0180004593.01.T01 AT3G62770 75.802 343 78 2 13 355 58 395 0.0 525
MsG0180004593.01.T01 AT2G40810 59.259 378 137 5 17 380 14 388 1.40e-160 456
MsG0180004593.01.T01 AT2G40810 59.259 378 137 5 17 380 14 388 1.40e-160 456
MsG0180004593.01.T01 AT3G56440 60.490 367 131 6 26 382 26 388 3.06e-160 456
MsG0180004593.01.T01 AT3G56440 60.000 340 122 6 26 355 26 361 6.87e-145 416
MsG0180004593.01.T01 AT3G56440 59.197 299 109 5 26 314 26 321 3.83e-125 364
MsG0180004593.01.T01 AT5G05150 47.514 362 171 5 25 384 22 366 1.62e-110 328
MsG0180004593.01.T01 AT2G40810 56.805 169 58 3 226 380 96 263 2.35e-57 188
MsG0180004593.01.T01 AT2G40810 46.809 94 48 2 17 110 14 105 4.94e-20 89.4
MsG0180004593.01.T01 AT4G30510 31.727 249 162 4 39 282 14 259 9.96e-32 123
MsG0180004593.01.T01 AT4G30510 32.195 205 134 3 83 282 1 205 4.65e-25 104

Find 149 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAAATTGAATTGAAATT+AGG 0.116893 1:-80094546 None:intergenic
GAAATTAGGGTTCTCGAATT+TGG 0.127657 1:-80094532 None:intergenic
TTACAAGAATTGAAGAATTT+AGG 0.140724 1:-80094571 None:intergenic
TTGAGAGGTTTGAGACATTT+AGG 0.157626 1:-80094602 None:intergenic
AGGACGTTGGAGGTAGAATT+TGG 0.206534 1:-80094694 None:intergenic
TACAAGAATTGAAGAATTTA+GGG 0.219015 1:-80094570 None:intergenic
GGTTGCAGAAGGGTCAAATT+AGG 0.220681 1:+80095154 MsG0180004593.01.T01:CDS
GTCCCAAATCATCACCTTAT+TGG 0.233471 1:-80094914 None:intergenic
TGAAAATTGAATTGAAATTA+GGG 0.258342 1:-80094545 None:intergenic
GCTCCAAAGGGACTCTTGTT+AGG 0.259047 1:+80095280 MsG0180004593.01.T01:CDS
TATAATAAGTTTATGTTTCC+AGG 0.261573 1:-80094467 None:intergenic
ATGTGAAGTTTCACATGTTT+CGG 0.262218 1:+80095107 MsG0180004593.01.T01:CDS
AAATTAGGGTTCTCGAATTT+GGG 0.263912 1:-80094531 None:intergenic
AGAATGTCTCTTCTGGCTTT+AGG 0.269846 1:-80097856 None:intergenic
TTTGGTCCCGGCGGCGGAAT+TGG 0.275340 1:+80094820 MsG0180004593.01.T01:CDS
ACTTAAGGTTATTATAAATA+AGG 0.276212 1:-80097951 None:intergenic
GATTTGGGGAAGTTGGAATT+GGG 0.276850 1:-80094666 None:intergenic
CGATAGAATCGTCGTTGTTT+TGG 0.280713 1:+80095005 MsG0180004593.01.T01:CDS
GGATTTGGGGAAGTTGGAAT+TGG 0.282399 1:-80094667 None:intergenic
TGTGAAGTTTCACATGTTTC+GGG 0.284835 1:+80095108 MsG0180004593.01.T01:CDS
TGAGAGGTTTGAGACATTTA+GGG 0.292339 1:-80094601 None:intergenic
AATTGTGTCAGAAATATTCT+AGG 0.292753 1:+80098088 MsG0180004593.01.T01:three_prime_UTR
TTGGTTGTGTCAATTAAAAT+TGG 0.295581 1:+80098042 MsG0180004593.01.T01:three_prime_UTR
CTTCGGAATCGAGAGGCATT+AGG 0.303534 1:-80094627 None:intergenic
TTCACATGTTTCGGGAACTA+TGG 0.320785 1:+80095116 MsG0180004593.01.T01:CDS
TATACTATATTTACAACTTA+AGG 0.323494 1:-80097966 None:intergenic
AAGGTTGATTCGGGATTGTT+GGG 0.324856 1:+80096261 MsG0180004593.01.T01:CDS
ATTATAAATAAGGAGGTAAA+TGG 0.325174 1:-80097941 None:intergenic
CCAGGTGAGGTTGGTTGGAT+TGG 0.325873 1:-80094449 None:intergenic
CAGCCAATAAGGTGATGATT+TGG 0.335450 1:+80094911 MsG0180004593.01.T01:CDS
GGACGTTGGAGGTAGAATTT+GGG 0.340297 1:-80094693 None:intergenic
TGTTTCGGGAACTATGGTTT+TGG 0.343715 1:+80095122 MsG0180004593.01.T01:CDS
CCCACGCTATCCAGCCAATA+AGG 0.343990 1:+80094900 MsG0180004593.01.T01:CDS
TCGTCTCTTTCATTTATTAG+AGG 0.349163 1:+80096339 MsG0180004593.01.T01:CDS
GAAGGTTGATTCGGGATTGT+TGG 0.356073 1:+80096260 MsG0180004593.01.T01:CDS
AAAGGATTGGATGACATTAC+TGG 0.356520 1:-80097996 None:intergenic
TTTGCCGCCGGCACCGATCA+TGG 0.367511 1:+80094748 MsG0180004593.01.T01:CDS
TGAGGTTGGTTGGATTGGAT+TGG 0.368597 1:-80094444 None:intergenic
GAGGTTGGTTGGATTGGATT+GGG 0.375388 1:-80094443 None:intergenic
TTCAACCTGAAGGTTGATTC+GGG 0.377452 1:+80096252 MsG0180004593.01.T01:CDS
TCATACTAGAATGTCTCTTC+TGG 0.391067 1:-80097863 None:intergenic
CTTCAACCTGAAGGTTGATT+CGG 0.394087 1:+80096251 MsG0180004593.01.T01:CDS
GTTGCAGAAGGGTCAAATTA+GGG 0.396959 1:+80095155 MsG0180004593.01.T01:CDS
AACCCTAACAAGAGTCCCTT+TGG 0.416142 1:-80095283 None:intergenic
GGCTTGTCCTGGGTTGCAGA+AGG 0.416417 1:+80095143 MsG0180004593.01.T01:CDS
GGAAGTTGGAATTGGGGTTG+AGG 0.417719 1:-80094659 None:intergenic
TTCGGAATCGAGAGGCATTA+GGG 0.424964 1:-80094626 None:intergenic
CTCCAAAGGGACTCTTGTTA+GGG 0.426131 1:+80095281 MsG0180004593.01.T01:CDS
GGTTGAGGATGGTGATTCTT+CGG 0.429172 1:-80094644 None:intergenic
AGCCAATAAGGTGATGATTT+GGG 0.436245 1:+80094912 MsG0180004593.01.T01:CDS
CGGAGAGTTGTCGTTTCGTT+CGG 0.437248 1:+80094957 MsG0180004593.01.T01:CDS
AGCAAGCAAACGACCATCTT+GGG 0.438730 1:-80095250 None:intergenic
ACAATCCCGAATCAACCTTC+AGG 0.441849 1:-80096257 None:intergenic
TGTTTCCAGGTGAGGTTGGT+TGG 0.444159 1:-80094454 None:intergenic
TAAGAGAACTAAGTTCATAA+TGG 0.444385 1:+80095194 MsG0180004593.01.T01:CDS
TTACAATATCATGTTGCCTT+CGG 0.456525 1:+80096621 MsG0180004593.01.T01:CDS
ACCTTATTGGCTGGATAGCG+TGG 0.456909 1:-80094901 None:intergenic
TAGCAAGCAAACGACCATCT+TGG 0.463630 1:-80095251 None:intergenic
CTTGCTACTGCAAGCTCCAA+AGG 0.465454 1:+80095267 MsG0180004593.01.T01:CDS
CGGCAAAGCAGCCGGAGTCC+TGG 0.467181 1:-80094732 None:intergenic
CCAATCCAACCAACCTCACC+TGG 0.468492 1:+80094449 MsG0180004593.01.T01:five_prime_UTR
GTTGGAATTGGGGTTGAGGA+TGG 0.469395 1:-80094655 None:intergenic
CAAATCATCACCTTATTGGC+TGG 0.472373 1:-80094910 None:intergenic
GAAACTATTGCTAACCCTAC+GGG 0.472592 1:+80095081 MsG0180004593.01.T01:CDS
GACTAAGCCAATTCCGCCGC+CGG 0.485684 1:-80094827 None:intergenic
TACAATTGTAATACTTGGCA+TGG 0.487686 1:+80096656 MsG0180004593.01.T01:CDS
CGGAGTCCTGGTTGAAGGAT+AGG 0.489221 1:-80094720 None:intergenic
TGCAATATCCTCGCTTTCGT+CGG 0.492313 1:+80094865 MsG0180004593.01.T01:CDS
GGATGGTTCTTTGCTTCAAG+AGG 0.496036 1:+80095317 MsG0180004593.01.T01:CDS
TCGTTTCGTTCGGAGGTGAA+AGG 0.497763 1:+80094967 MsG0180004593.01.T01:CDS
ATTTGACCCTTCTGCAACCC+AGG 0.497963 1:-80095150 None:intergenic
GAAGCCGCCGACGGGCTAGT+AGG 0.498221 1:-80096318 None:intergenic
TTTATGTTTCCAGGTGAGGT+TGG 0.500234 1:-80094458 None:intergenic
TAATACTTGGCATGGATGGC+AGG 0.502259 1:+80096664 MsG0180004593.01.T01:CDS
GGTGCCGGCGGCAAAGCAGC+CGG 0.502398 1:-80094740 None:intergenic
ATTTGGGGAAGTTGGAATTG+GGG 0.506962 1:-80094665 None:intergenic
GGATAGGTGGAGGACGTTGG+AGG 0.513566 1:-80094704 None:intergenic
GATCATCAATCACGGTGTAT+CGG 0.516564 1:+80094937 MsG0180004593.01.T01:CDS
GCAGCCGGAGTCCTGGTTGA+AGG 0.517004 1:-80094725 None:intergenic
GGCGGAAAATTTCGCGGAAG+GGG 0.519716 1:-80094792 None:intergenic
ATATATACACAGCAAAGGAT+TGG 0.520420 1:-80098009 None:intergenic
TAAGTTTATGTTTCCAGGTG+AGG 0.520566 1:-80094462 None:intergenic
GCGGAAGCCATGATCGGTGC+CGG 0.522383 1:-80094755 None:intergenic
GATTCTGTATATATCTTCGT+TGG 0.522681 1:+80097892 MsG0180004593.01.T01:three_prime_UTR
GCTTGTCCTGGGTTGCAGAA+GGG 0.523856 1:+80095144 MsG0180004593.01.T01:CDS
GAAGGATAGGTGGAGGACGT+TGG 0.528553 1:-80094707 None:intergenic
TGTCAATTTGACACTGCAAC+TGG 0.532622 1:+80097800 MsG0180004593.01.T01:CDS
ATTGTAATACTTGGCATGGA+TGG 0.536767 1:+80096660 MsG0180004593.01.T01:CDS
ATCCTCGCTTTCGTCGGTGG+CGG 0.540583 1:+80094871 MsG0180004593.01.T01:CDS
TAAGGTTATTATAAATAAGG+AGG 0.547436 1:-80097948 None:intergenic
CACTCTGAGCTAAAATACTT+AGG 0.547800 1:-80096567 None:intergenic
AGAGTTGTCGTTTCGTTCGG+AGG 0.554459 1:+80094960 MsG0180004593.01.T01:CDS
GACTCCGGCTGCTTTGCCGC+CGG 0.557421 1:+80094736 MsG0180004593.01.T01:CDS
GTAGGACTAGACTTGGATGT+AGG 0.560668 1:-80096300 None:intergenic
CGGGCTAGTAGGACTAGACT+TGG 0.561677 1:-80096307 None:intergenic
TGAAACTATTGCTAACCCTA+CGG 0.562131 1:+80095080 MsG0180004593.01.T01:CDS
GCTCAATTTCGCTTGCAAGA+AGG 0.566558 1:+80096597 MsG0180004593.01.T01:CDS
TTGCTACTGCAAGCTCCAAA+GGG 0.566940 1:+80095268 MsG0180004593.01.T01:CDS
AATATCCTCGCTTTCGTCGG+TGG 0.568451 1:+80094868 MsG0180004593.01.T01:CDS
CCACTGTGCAGTGGAAGAGA+AGG 0.569859 1:-80096193 None:intergenic
TGTATATATATGTTAAAGCT+TGG 0.570850 1:+80098023 MsG0180004593.01.T01:three_prime_UTR
AAAGAGACGAAGCCGCCGAC+GGG 0.573302 1:-80096326 None:intergenic
CGGCGGAAAATTTCGCGGAA+GGG 0.574148 1:-80094793 None:intergenic
GAAGGCGAGGCTATATATCT+CGG 0.578334 1:-80096175 None:intergenic
AACATATATATACACAGCAA+AGG 0.580642 1:-80098014 None:intergenic
ACTAAGCCAATTCCGCCGCC+GGG 0.583325 1:-80094826 None:intergenic
GCGGCGGAAAATTTCGCGGA+AGG 0.583883 1:-80094794 None:intergenic
CGTTCATGTCTTCAACCTGA+AGG 0.584539 1:+80096242 MsG0180004593.01.T01:CDS
CGCCGCCGGGACCAAAATCG+CGG 0.587933 1:-80094813 None:intergenic
GAGAGGCATTAGGGTTTGAG+AGG 0.590032 1:-80094617 None:intergenic
GAAAGAGACGAAGCCGCCGA+CGG 0.591104 1:-80096327 None:intergenic
GACGTTGGAGGTAGAATTTG+GGG 0.592299 1:-80094692 None:intergenic
AATCGCGGCGGAAAATTTCG+CGG 0.597246 1:-80094798 None:intergenic
GAAACTTCACATAGCCCCGT+AGG 0.599056 1:-80095096 None:intergenic
ATTTGACACTGCAACTGGTG+GGG 0.602166 1:+80097805 MsG0180004593.01.T01:CDS
AGGTTGATTCGGGATTGTTG+GGG 0.605401 1:+80096262 MsG0180004593.01.T01:CDS
CCTGGTTGAAGGATAGGTGG+AGG 0.605827 1:-80094714 None:intergenic
GACAGCTAACCACTGTGCAG+TGG 0.609111 1:-80096202 None:intergenic
ATCCGCCACCGACGAAAGCG+AGG 0.611040 1:-80094873 None:intergenic
GTTAGCTGTCTCGAGTGACA+AGG 0.613865 1:+80096215 MsG0180004593.01.T01:CDS
GAAGCCATGATCGGTGCCGG+CGG 0.615093 1:-80094752 None:intergenic
TATTGCAGCGGAAGAGCATG+TGG 0.617070 1:-80094849 None:intergenic
CAATTTGACACTGCAACTGG+TGG 0.617442 1:+80097803 MsG0180004593.01.T01:CDS
TTGAAGCAAAGAACCATCCA+AGG 0.620125 1:-80095313 None:intergenic
CGAGGCTATATATCTCGGCT+CGG 0.620501 1:-80096170 None:intergenic
AAACTTCACATAGCCCCGTA+GGG 0.620552 1:-80095095 None:intergenic
CCTTATTGGCTGGATAGCGT+GGG 0.620931 1:-80094900 None:intergenic
AGTCCTGGTTGAAGGATAGG+TGG 0.628383 1:-80094717 None:intergenic
GTAGATGCGGAAGCCATGAT+CGG 0.630967 1:-80094761 None:intergenic
CTATCCTTCAACCAGGACTC+CGG 0.636696 1:+80094721 MsG0180004593.01.T01:CDS
AATTAGGGTTCTCGAATTTG+GGG 0.646014 1:-80094530 None:intergenic
AGGGGTCACAGTTGTAGATG+CGG 0.647313 1:-80094774 None:intergenic
TTGCAAGCGAAATTGAGCCA+CGG 0.647957 1:-80096592 None:intergenic
CCTCCACCTATCCTTCAACC+AGG 0.650019 1:+80094714 MsG0180004593.01.T01:CDS
CTTCAGGTTGAAGACATGAA+CGG 0.653538 1:-80096241 None:intergenic
CGCCGGGACCAAAATCGCGG+CGG 0.659958 1:-80094810 None:intergenic
AATTTGACACTGCAACTGGT+GGG 0.661297 1:+80097804 MsG0180004593.01.T01:CDS
GTGCAGTGGAAGAGAAGGCG+AGG 0.663052 1:-80096188 None:intergenic
ATTAGGGTTCTCGAATTTGG+GGG 0.665593 1:-80094529 None:intergenic
TTTGGGACGATCATCAATCA+CGG 0.678175 1:+80094929 MsG0180004593.01.T01:CDS
TTAGCTGTCTCGAGTGACAA+GGG 0.678765 1:+80096216 MsG0180004593.01.T01:CDS
GTCTAGTCCTACTAGCCCGT+CGG 0.680314 1:+80096311 MsG0180004593.01.T01:CDS
TAGTCCTACTAGCCCGTCGG+CGG 0.686994 1:+80096314 MsG0180004593.01.T01:CDS
GGTGATTCTTCGGAATCGAG+AGG 0.689322 1:-80094634 None:intergenic
CCTTCTCTTCCACTGCACAG+TGG 0.689510 1:+80096193 MsG0180004593.01.T01:CDS
CGAAAGCGAGGATATTGCAG+CGG 0.695987 1:-80094861 None:intergenic
AAACTATTGCTAACCCTACG+GGG 0.703947 1:+80095082 MsG0180004593.01.T01:CDS
TGATGATATCAGGTACGGAG+AGG 0.704005 1:+80096141 MsG0180004593.01.T01:intron
ACGTTGGAGGTAGAATTTGG+GGG 0.709414 1:-80094691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGTATTATTTTATTTTTT+TGG - Chr1:80097487-80097506 None:intergenic 10.0%
!! AAAAATACAATTGTAATACT+TGG + Chr1:80096651-80096670 MsG0180004593.01.T01:CDS 15.0%
!! AAAACAAATATATAAAACTG+CGG + Chr1:80097643-80097662 MsG0180004593.01.T01:intron 15.0%
!! ACTTAAGGTTATTATAAATA+AGG - Chr1:80097954-80097973 None:intergenic 15.0%
!! TAAATTTATAAAAGAATACC+AGG + Chr1:80097094-80097113 MsG0180004593.01.T01:intron 15.0%
!! TATACTATATTTACAACTTA+AGG - Chr1:80097969-80097988 None:intergenic 15.0%
!! TATTTAAGTATTAAGTATGA+TGG - Chr1:80095699-80095718 None:intergenic 15.0%
!! TGAAAATTGAATTGAAATTA+GGG - Chr1:80094548-80094567 None:intergenic 15.0%
!! TTGAAAATTGAATTGAAATT+AGG - Chr1:80094549-80094568 None:intergenic 15.0%
!!! AAATTTATTTTTTCTTGATC+AGG - Chr1:80097149-80097168 None:intergenic 15.0%
!!! AATTTATTTTTTCTTGATCA+GGG - Chr1:80097148-80097167 None:intergenic 15.0%
!! AAAATCTTAAAAAAGACCAT+AGG + Chr1:80097596-80097615 MsG0180004593.01.T01:intron 20.0%
!! AATTAATGAATAACTAACAG+TGG - Chr1:80096378-80096397 None:intergenic 20.0%
!! ATTATAAATAAGGAGGTAAA+TGG - Chr1:80097944-80097963 None:intergenic 20.0%
!! ATTGCTAGAATTAGAAATAT+AGG + Chr1:80095484-80095503 MsG0180004593.01.T01:intron 20.0%
!! CTTAATACTTAAATAACCTT+AGG + Chr1:80095704-80095723 MsG0180004593.01.T01:intron 20.0%
!! GATATTAGAATTATTCACAT+AGG + Chr1:80096759-80096778 MsG0180004593.01.T01:intron 20.0%
!! TAAGGTTATTATAAATAAGG+AGG - Chr1:80097951-80097970 None:intergenic 20.0%
!! TACAAGAATTGAAGAATTTA+GGG - Chr1:80094573-80094592 None:intergenic 20.0%
!! TATAATAAGTTTATGTTTCC+AGG - Chr1:80094470-80094489 None:intergenic 20.0%
!! TGAATGATGATAAATTGATA+TGG - Chr1:80097694-80097713 None:intergenic 20.0%
!! TGTATATATATGTTAAAGCT+TGG + Chr1:80098023-80098042 MsG0180004593.01.T01:three_prime_UTR 20.0%
!! TTACAAGAATTGAAGAATTT+AGG - Chr1:80094574-80094593 None:intergenic 20.0%
!!! AAAACAACGGTTTTAAAAAA+AGG + Chr1:80095872-80095891 MsG0180004593.01.T01:intron 20.0%
!!! CTTTTTTCTTTTAGAGTTTA+AGG + Chr1:80096970-80096989 MsG0180004593.01.T01:intron 20.0%
!!! TTTAAAACCGTTGTTTTTAA+GGG - Chr1:80095869-80095888 None:intergenic 20.0%
!!! TTTTAAAACCGTTGTTTTTA+AGG - Chr1:80095870-80095889 None:intergenic 20.0%
! AAAAAATCAGTGTACAAAGT+AGG + Chr1:80095638-80095657 MsG0180004593.01.T01:intron 25.0%
! AACATATATATACACAGCAA+AGG - Chr1:80098017-80098036 None:intergenic 25.0%
! AATTGTGTCAGAAATATTCT+AGG + Chr1:80098088-80098107 MsG0180004593.01.T01:three_prime_UTR 25.0%
! ACATAAAACTGAACTAAAAG+TGG + Chr1:80095757-80095776 MsG0180004593.01.T01:intron 25.0%
! AGAATTAGAAATATAGGTTG+AGG + Chr1:80095490-80095509 MsG0180004593.01.T01:intron 25.0%
! ATAAATACACATATGAGCAA+TGG - Chr1:80097051-80097070 None:intergenic 25.0%
! ATTTATGCCCTTAAAAACAA+CGG + Chr1:80095859-80095878 MsG0180004593.01.T01:intron 25.0%
! CATAAAACTGAACTAAAAGT+GGG + Chr1:80095758-80095777 MsG0180004593.01.T01:intron 25.0%
! CATTAATTAGTTATCATGTG+TGG + Chr1:80096390-80096409 MsG0180004593.01.T01:intron 25.0%
! TAAATGAATTAAGGGCAATT+GGG - Chr1:80097236-80097255 None:intergenic 25.0%
! TAAGAGAACTAAGTTCATAA+TGG + Chr1:80095194-80095213 MsG0180004593.01.T01:CDS 25.0%
! TTAAATGAATTAAGGGCAAT+TGG - Chr1:80097237-80097256 None:intergenic 25.0%
! TTGGTTGTGTCAATTAAAAT+TGG + Chr1:80098042-80098061 MsG0180004593.01.T01:three_prime_UTR 25.0%
!! ATAACATTTTTACCCTTGAA+AGG + Chr1:80095824-80095843 MsG0180004593.01.T01:intron 25.0%
!! TAACATTTTTACCCTTGAAA+GGG + Chr1:80095825-80095844 MsG0180004593.01.T01:intron 25.0%
!! TATGATGAGTTCAATTGTTT+TGG + Chr1:80096103-80096122 MsG0180004593.01.T01:intron 25.0%
!! TTGGAAATTATGGTTTTTGA+TGG + Chr1:80096491-80096510 MsG0180004593.01.T01:intron 25.0%
!!! GGTTTTAAAAAAAGGATTTG+AGG + Chr1:80095880-80095899 MsG0180004593.01.T01:intron 25.0%
!!! TCTAAAACATCCTAAGTTTT+GGG + Chr1:80097562-80097581 MsG0180004593.01.T01:intron 25.0%
!!! TGTTTGTTAGTTTTGTTACT+AGG + Chr1:80095452-80095471 MsG0180004593.01.T01:intron 25.0%
!!! TTAGTTTTGTTACTAGGATT+TGG + Chr1:80095458-80095477 MsG0180004593.01.T01:intron 25.0%
!!! TTCTAAAACATCCTAAGTTT+TGG + Chr1:80097561-80097580 MsG0180004593.01.T01:intron 25.0%
!!! TTGTTTAGAAATGTTGGTTT+TGG + Chr1:80095534-80095553 MsG0180004593.01.T01:intron 25.0%
!!! TTTGTTTGGTTTGGAAATTA+TGG + Chr1:80096481-80096500 MsG0180004593.01.T01:intron 25.0%
!!! TTTTTTAGTCTTTGCAATAG+TGG - Chr1:80095624-80095643 None:intergenic 25.0%
AAATTAGGGTTCTCGAATTT+GGG - Chr1:80094534-80094553 None:intergenic 30.0%
AGGAAACAACGAACTAAAAA+AGG - Chr1:80096716-80096735 None:intergenic 30.0%
ATATATACACAGCAAAGGAT+TGG - Chr1:80098012-80098031 None:intergenic 30.0%
ATGTGAAGTTTCACATGTTT+CGG + Chr1:80095107-80095126 MsG0180004593.01.T01:CDS 30.0%
CATGCTTATAGTTGTTGTAA+AGG + Chr1:80097279-80097298 MsG0180004593.01.T01:intron 30.0%
GATTCTGTATATATCTTCGT+TGG + Chr1:80097892-80097911 MsG0180004593.01.T01:three_prime_UTR 30.0%
GGAAAAAGAGAATAAAAGAG+AGG - Chr1:80094511-80094530 None:intergenic 30.0%
TAATATCTCTAAGCAACACA+AGG - Chr1:80096746-80096765 None:intergenic 30.0%
TACAATTGTAATACTTGGCA+TGG + Chr1:80096656-80096675 MsG0180004593.01.T01:CDS 30.0%
TCGTCTCTTTCATTTATTAG+AGG + Chr1:80096339-80096358 MsG0180004593.01.T01:CDS 30.0%
TGCAACAACAAATGTTGTTA+TGG - Chr1:80096449-80096468 None:intergenic 30.0%
TTACAATATCATGTTGCCTT+CGG + Chr1:80096621-80096640 MsG0180004593.01.T01:CDS 30.0%
TTATAGTAACCAAGTTGCTT+GGG + Chr1:80097321-80097340 MsG0180004593.01.T01:intron 30.0%
TTATTGTTGTCCCAAAACTT+AGG - Chr1:80097575-80097594 None:intergenic 30.0%
! TGCTGATTGTTTAGAAATGT+TGG + Chr1:80095528-80095547 MsG0180004593.01.T01:intron 30.0%
!!! AATTGTTTTGGAAGACTGAA+TGG + Chr1:80096115-80096134 MsG0180004593.01.T01:intron 30.0%
!!! ATTGTTTTGGAAGACTGAAT+GGG + Chr1:80096116-80096135 MsG0180004593.01.T01:intron 30.0%
!!! CATCAGATGTTTTAATTCTC+GGG - Chr1:80097743-80097762 None:intergenic 30.0%
!!! GCATCAGATGTTTTAATTCT+CGG - Chr1:80097744-80097763 None:intergenic 30.0%
AAAAAGACCATAGGTTTGAG+AGG + Chr1:80097605-80097624 MsG0180004593.01.T01:intron 35.0%
AAAAGACCATAGGTTTGAGA+GGG + Chr1:80097606-80097625 MsG0180004593.01.T01:intron 35.0%
AAAGGATTGGATGACATTAC+TGG - Chr1:80097999-80098018 None:intergenic 35.0%
AAGCAACACAAGGAAAAAGA+AGG - Chr1:80096736-80096755 None:intergenic 35.0%
AATTAGGGTTCTCGAATTTG+GGG - Chr1:80094533-80094552 None:intergenic 35.0%
ACAACGAACTAAAAAAGGCA+TGG - Chr1:80096711-80096730 None:intergenic 35.0%
AGCCAATAAGGTGATGATTT+GGG + Chr1:80094912-80094931 MsG0180004593.01.T01:CDS 35.0%
ATTGTAATACTTGGCATGGA+TGG + Chr1:80096660-80096679 MsG0180004593.01.T01:CDS 35.0%
CACTCTGAGCTAAAATACTT+AGG - Chr1:80096570-80096589 None:intergenic 35.0%
CATCATACACACAAAACAGA+AGG - Chr1:80096090-80096109 None:intergenic 35.0%
CCTACAAAACAGACAGAATT+AGG - Chr1:80096540-80096559 None:intergenic 35.0%
CTTATAGTAACCAAGTTGCT+TGG + Chr1:80097320-80097339 MsG0180004593.01.T01:intron 35.0%
GAAATTAGGGTTCTCGAATT+TGG - Chr1:80094535-80094554 None:intergenic 35.0%
GCTATTGACAGCATATATGT+TGG + Chr1:80096050-80096069 MsG0180004593.01.T01:intron 35.0%
TAAGTTTATGTTTCCAGGTG+AGG - Chr1:80094465-80094484 None:intergenic 35.0%
TAATCATGCAGCTAGTTGTT+TGG - Chr1:80097021-80097040 None:intergenic 35.0%
TCATACTAGAATGTCTCTTC+TGG - Chr1:80097866-80097885 None:intergenic 35.0%
TGAAACTATTGCTAACCCTA+CGG + Chr1:80095080-80095099 MsG0180004593.01.T01:CDS 35.0%
TGGGAAGAAGAACAAAACAA+GGG + Chr1:80095777-80095796 MsG0180004593.01.T01:intron 35.0%
TGTGAAGTTTCACATGTTTC+GGG + Chr1:80095108-80095127 MsG0180004593.01.T01:CDS 35.0%
TGTTAAGATAAGACTACCAG+TGG - Chr1:80096899-80096918 None:intergenic 35.0%
TTTCTTGATCAGGGATTAGA+GGG - Chr1:80097182-80097201 None:intergenic 35.0%
! CAGCCTATGTCAATTTTAGA+GGG - Chr1:80096855-80096874 None:intergenic 35.0%
! CCTAATTCTGTCTGTTTTGT+AGG + Chr1:80096537-80096556 MsG0180004593.01.T01:intron 35.0%
! TATACCGCCATAGCATTTTA+GGG - Chr1:80095592-80095611 None:intergenic 35.0%
! TCAGCCTATGTCAATTTTAG+AGG - Chr1:80096856-80096875 None:intergenic 35.0%
! TGAAAGTGATGTTCTAAACC+TGG - Chr1:80097115-80097134 None:intergenic 35.0%
! TGAGAGGTTTGAGACATTTA+GGG - Chr1:80094604-80094623 None:intergenic 35.0%
! TGTATTTTTCTGATGACCGA+AGG - Chr1:80096640-80096659 None:intergenic 35.0%
! TGTTAGGGTTTTCAATACCT+TGG + Chr1:80095296-80095315 MsG0180004593.01.T01:CDS 35.0%
! TTGAGAGGTTTGAGACATTT+AGG - Chr1:80094605-80094624 None:intergenic 35.0%
! TTTTCTTGATCAGGGATAGA+GGG - Chr1:80097140-80097159 None:intergenic 35.0%
! TTTTCTTGATCAGGGATTAG+AGG - Chr1:80097183-80097202 None:intergenic 35.0%
! TTTTTCTTGATCAGGGATAG+AGG - Chr1:80097141-80097160 None:intergenic 35.0%
!! CTACCCTCTAAAATTGACAT+AGG + Chr1:80096849-80096868 MsG0180004593.01.T01:intron 35.0%
!! TGTTTTGCTATAACCCAAGA+TGG + Chr1:80095237-80095256 MsG0180004593.01.T01:CDS 35.0%
!!! CTAAGTATTTTAGCTCAGAG+TGG + Chr1:80096568-80096587 MsG0180004593.01.T01:CDS 35.0%
!!! TATTTTTTTGGCTTTCGCAC+CGG - Chr1:80097475-80097494 None:intergenic 35.0%
AAAATGCTATGGCGGTATAG+TGG + Chr1:80095593-80095612 MsG0180004593.01.T01:intron 40.0%
AAACTATTGCTAACCCTACG+GGG + Chr1:80095082-80095101 MsG0180004593.01.T01:CDS 40.0%
AAATGCTATGGCGGTATAGT+GGG + Chr1:80095594-80095613 MsG0180004593.01.T01:intron 40.0%
AAGCTGGAGACAAACAATAG+CGG - Chr1:80095974-80095993 None:intergenic 40.0%
AATTCTCGGGAAAAAAGAGC+AGG - Chr1:80097730-80097749 None:intergenic 40.0%
AATTTGACACTGCAACTGGT+GGG + Chr1:80097804-80097823 MsG0180004593.01.T01:CDS 40.0%
ACAAACAATAGCGGTTGTTG+CGG - Chr1:80095965-80095984 None:intergenic 40.0%
ACCCTTGAAAGGGTTTGAAT+TGG + Chr1:80095835-80095854 MsG0180004593.01.T01:intron 40.0%
ATCATCAAGATTTGTGCCAC+TGG + Chr1:80096880-80096899 MsG0180004593.01.T01:intron 40.0%
ATTAGGGTTCTCGAATTTGG+GGG - Chr1:80094532-80094551 None:intergenic 40.0%
ATTTGGGGAAGTTGGAATTG+GGG - Chr1:80094668-80094687 None:intergenic 40.0%
CAAATCATCACCTTATTGGC+TGG - Chr1:80094913-80094932 None:intergenic 40.0%
CAGCCAATAAGGTGATGATT+TGG + Chr1:80094911-80094930 MsG0180004593.01.T01:CDS 40.0%
GAAACTATTGCTAACCCTAC+GGG + Chr1:80095081-80095100 MsG0180004593.01.T01:CDS 40.0%
GATCATCAATCACGGTGTAT+CGG + Chr1:80094937-80094956 MsG0180004593.01.T01:CDS 40.0%
GATGGCAGGTATTTCAGTAA+TGG + Chr1:80096678-80096697 MsG0180004593.01.T01:intron 40.0%
GATTTGGGGAAGTTGGAATT+GGG - Chr1:80094669-80094688 None:intergenic 40.0%
GCCAATTCAAACCCTTTCAA+GGG - Chr1:80095839-80095858 None:intergenic 40.0%
GTCCCAAATCATCACCTTAT+TGG - Chr1:80094917-80094936 None:intergenic 40.0%
GTGGGAAGAAGAACAAAACA+AGG + Chr1:80095776-80095795 MsG0180004593.01.T01:intron 40.0%
GTTGCAGAAGGGTCAAATTA+GGG + Chr1:80095155-80095174 MsG0180004593.01.T01:CDS 40.0%
GTTGTATTGCTCTGTACCTA+AGG - Chr1:80095723-80095742 None:intergenic 40.0%
TCAGTCAGAAACCCTAATAG+TGG + Chr1:80095907-80095926 MsG0180004593.01.T01:intron 40.0%
TCCAAACCAAACAAAACCCT+GGG - Chr1:80096476-80096495 None:intergenic 40.0%
TGAATGGGAGTGATGATATC+AGG + Chr1:80096131-80096150 MsG0180004593.01.T01:intron 40.0%
TGCCAATTCAAACCCTTTCA+AGG - Chr1:80095840-80095859 None:intergenic 40.0%
TGTCAATTTGACACTGCAAC+TGG + Chr1:80097800-80097819 MsG0180004593.01.T01:CDS 40.0%
TTCACATAGGACTACTAGCA+TGG + Chr1:80096772-80096791 MsG0180004593.01.T01:intron 40.0%
TTCACATGTTTCGGGAACTA+TGG + Chr1:80095116-80095135 MsG0180004593.01.T01:CDS 40.0%
TTCCAAACCAAACAAAACCC+TGG - Chr1:80096477-80096496 None:intergenic 40.0%
TTGAAGCAAAGAACCATCCA+AGG - Chr1:80095316-80095335 None:intergenic 40.0%
TTTATGTTTCCAGGTGAGGT+TGG - Chr1:80094461-80094480 None:intergenic 40.0%
! AGGGTTTTCAATACCTTGGA+TGG + Chr1:80095300-80095319 MsG0180004593.01.T01:CDS 40.0%
! ATACCGCCATAGCATTTTAG+GGG - Chr1:80095591-80095610 None:intergenic 40.0%
! CGATAGAATCGTCGTTGTTT+TGG + Chr1:80095005-80095024 MsG0180004593.01.T01:CDS 40.0%
! CTATACCGCCATAGCATTTT+AGG - Chr1:80095593-80095612 None:intergenic 40.0%
! CTTCAACCTGAAGGTTGATT+CGG + Chr1:80096251-80096270 MsG0180004593.01.T01:CDS 40.0%
! TAGAATTTGGGGGTGGATTT+GGG - Chr1:80094684-80094703 None:intergenic 40.0%
! TGTTTCGGGAACTATGGTTT+TGG + Chr1:80095122-80095141 MsG0180004593.01.T01:CDS 40.0%
! TTCAACCTGAAGGTTGATTC+GGG + Chr1:80096252-80096271 MsG0180004593.01.T01:CDS 40.0%
! TTTGGGACGATCATCAATCA+CGG + Chr1:80094929-80094948 MsG0180004593.01.T01:CDS 40.0%
!! AAGGTTGATTCGGGATTGTT+GGG + Chr1:80096261-80096280 MsG0180004593.01.T01:CDS 40.0%
!! AATTTTAGAGGGTAGTGCAC+GGG - Chr1:80096844-80096863 None:intergenic 40.0%
!! AGAATGTCTCTTCTGGCTTT+AGG - Chr1:80097859-80097878 None:intergenic 40.0%
!! CAATTTTAGAGGGTAGTGCA+CGG - Chr1:80096845-80096864 None:intergenic 40.0%
!! CTTCAGGTTGAAGACATGAA+CGG - Chr1:80096244-80096263 None:intergenic 40.0%
AAACTTCACATAGCCCCGTA+GGG - Chr1:80095098-80095117 None:intergenic 45.0%
AACCCTAACAAGAGTCCCTT+TGG - Chr1:80095286-80095305 None:intergenic 45.0%
AATACCGGGTTCAATTCCCA+GGG + Chr1:80097375-80097394 MsG0180004593.01.T01:intron 45.0%
ACAATCCCGAATCAACCTTC+AGG - Chr1:80096260-80096279 None:intergenic 45.0%
ACATAGGACTACTAGCATGG+TGG + Chr1:80096775-80096794 MsG0180004593.01.T01:intron 45.0%
ACGTTGGAGGTAGAATTTGG+GGG - Chr1:80094694-80094713 None:intergenic 45.0%
AGCAAGCAAACGACCATCTT+GGG - Chr1:80095253-80095272 None:intergenic 45.0%
AGGACGTTGGAGGTAGAATT+TGG - Chr1:80094697-80094716 None:intergenic 45.0%
ATTGTTTGTCTCCAGCTTGC+AGG + Chr1:80095976-80095995 MsG0180004593.01.T01:intron 45.0%
ATTTGACACTGCAACTGGTG+GGG + Chr1:80097805-80097824 MsG0180004593.01.T01:CDS 45.0%
ATTTGTCGCCCAACACTGTT+GGG + Chr1:80097442-80097461 MsG0180004593.01.T01:intron 45.0%
CAATTTGACACTGCAACTGG+TGG + Chr1:80097803-80097822 MsG0180004593.01.T01:CDS 45.0%
CCTAATAGTGGTTGCGATAG+CGG + Chr1:80095919-80095938 MsG0180004593.01.T01:intron 45.0%
CGCTATCGCAACCACTATTA+GGG - Chr1:80095921-80095940 None:intergenic 45.0%
CGTTCATGTCTTCAACCTGA+AGG + Chr1:80096242-80096261 MsG0180004593.01.T01:CDS 45.0%
CTCCAAAGGGACTCTTGTTA+GGG + Chr1:80095281-80095300 MsG0180004593.01.T01:CDS 45.0%
CTGTCAATAGCACGCTATAG+CGG - Chr1:80096041-80096060 None:intergenic 45.0%
GAAGGCGAGGCTATATATCT+CGG - Chr1:80096178-80096197 None:intergenic 45.0%
GACGTTGGAGGTAGAATTTG+GGG - Chr1:80094695-80094714 None:intergenic 45.0%
GCTCAATTTCGCTTGCAAGA+AGG + Chr1:80096597-80096616 MsG0180004593.01.T01:CDS 45.0%
GGACGTTGGAGGTAGAATTT+GGG - Chr1:80094696-80094715 None:intergenic 45.0%
GGATGGTTCTTTGCTTCAAG+AGG + Chr1:80095317-80095336 MsG0180004593.01.T01:CDS 45.0%
GGATTTGGGGAAGTTGGAAT+TGG - Chr1:80094670-80094689 None:intergenic 45.0%
GGGAGTGATGATATCAGGTA+CGG + Chr1:80096136-80096155 MsG0180004593.01.T01:intron 45.0%
GGTTGAGGATGGTGATTCTT+CGG - Chr1:80094647-80094666 None:intergenic 45.0%
GGTTGCAGAAGGGTCAAATT+AGG + Chr1:80095154-80095173 MsG0180004593.01.T01:CDS 45.0%
GTAGGACTAGACTTGGATGT+AGG - Chr1:80096303-80096322 None:intergenic 45.0%
GTTTCCAACCCAACAGTGTT+GGG - Chr1:80097453-80097472 None:intergenic 45.0%
TAATACTTGGCATGGATGGC+AGG + Chr1:80096664-80096683 MsG0180004593.01.T01:CDS 45.0%
TAGCAAGCAAACGACCATCT+TGG - Chr1:80095254-80095273 None:intergenic 45.0%
TGATGATATCAGGTACGGAG+AGG + Chr1:80096141-80096160 MsG0180004593.01.T01:intron 45.0%
TGCAATATCCTCGCTTTCGT+CGG + Chr1:80094865-80094884 MsG0180004593.01.T01:CDS 45.0%
TTAGCTGTCTCGAGTGACAA+GGG + Chr1:80096216-80096235 MsG0180004593.01.T01:CDS 45.0%
TTGCAAGCGAAATTGAGCCA+CGG - Chr1:80096595-80096614 None:intergenic 45.0%
TTGCTACTGCAAGCTCCAAA+GGG + Chr1:80095268-80095287 MsG0180004593.01.T01:CDS 45.0%
! AGAATTTGGGGGTGGATTTG+GGG - Chr1:80094683-80094702 None:intergenic 45.0%
! GAAATTTTCCGCCGCGATTT+TGG + Chr1:80094802-80094821 MsG0180004593.01.T01:CDS 45.0%
! GAGGTTGGTTGGATTGGATT+GGG - Chr1:80094446-80094465 None:intergenic 45.0%
! GTAGAATTTGGGGGTGGATT+TGG - Chr1:80094685-80094704 None:intergenic 45.0%
! TACCGCCATAGCATTTTAGG+GGG - Chr1:80095590-80095609 None:intergenic 45.0%
! TGAGGTTGGTTGGATTGGAT+TGG - Chr1:80094447-80094466 None:intergenic 45.0%
!! AACACTGTTGGGTTGGAAAC+CGG + Chr1:80097453-80097472 MsG0180004593.01.T01:intron 45.0%
!! AGGTTGATTCGGGATTGTTG+GGG + Chr1:80096262-80096281 MsG0180004593.01.T01:CDS 45.0%
!! ATTTGTTGTTGCATCAGCCC+AGG + Chr1:80096456-80096475 MsG0180004593.01.T01:intron 45.0%
!! GAAGGTTGATTCGGGATTGT+TGG + Chr1:80096260-80096279 MsG0180004593.01.T01:CDS 45.0%
!! TTCGGAATCGAGAGGCATTA+GGG - Chr1:80094629-80094648 None:intergenic 45.0%
!! TTTGTTGTTGCATCAGCCCA+GGG + Chr1:80096457-80096476 MsG0180004593.01.T01:intron 45.0%
!!! ACTATGGTTTTGGCTTGTCC+TGG + Chr1:80095132-80095151 MsG0180004593.01.T01:CDS 45.0%
!!! CTATGGTTTTGGCTTGTCCT+GGG + Chr1:80095133-80095152 MsG0180004593.01.T01:CDS 45.0%
!!! ATTTTTATTAAATGAATTAA+GGG - Chr1:80097244-80097263 None:intergenic 5.0%
!!! TATTTTTATTAAATGAATTA+AGG - Chr1:80097245-80097264 None:intergenic 5.0%
AATATCCTCGCTTTCGTCGG+TGG + Chr1:80094868-80094887 MsG0180004593.01.T01:CDS 50.0%
AATCGCGGCGGAAAATTTCG+CGG - Chr1:80094801-80094820 None:intergenic 50.0%
ACCTGCCCCCTAAAATGCTA+TGG + Chr1:80095582-80095601 MsG0180004593.01.T01:intron 50.0%
AGACCATAGGTTTGAGAGGG+AGG + Chr1:80097609-80097628 MsG0180004593.01.T01:intron 50.0%
AGGACGTACACAGGGAATAC+CGG + Chr1:80097360-80097379 MsG0180004593.01.T01:intron 50.0%
AGGGGTCACAGTTGTAGATG+CGG - Chr1:80094777-80094796 None:intergenic 50.0%
AGTCCTGGTTGAAGGATAGG+TGG - Chr1:80094720-80094739 None:intergenic 50.0%
ATACCGGGTTCAATTCCCAG+GGG + Chr1:80097376-80097395 MsG0180004593.01.T01:intron 50.0%
ATCCCTCCCTCTCAAACCTA+TGG - Chr1:80097615-80097634 None:intergenic 50.0%
ATTTGACCCTTCTGCAACCC+AGG - Chr1:80095153-80095172 None:intergenic 50.0%
CCGCTATCGCAACCACTATT+AGG - Chr1:80095922-80095941 None:intergenic 50.0%
CGAAAGCGAGGATATTGCAG+CGG - Chr1:80094864-80094883 None:intergenic 50.0%
CGAGGCTATATATCTCGGCT+CGG - Chr1:80096173-80096192 None:intergenic 50.0%
CTATCCTTCAACCAGGACTC+CGG + Chr1:80094721-80094740 MsG0180004593.01.T01:CDS 50.0%
CTTGCTACTGCAAGCTCCAA+AGG + Chr1:80095267-80095286 MsG0180004593.01.T01:CDS 50.0%
GAAACTTCACATAGCCCCGT+AGG - Chr1:80095099-80095118 None:intergenic 50.0%
GAATACCGGGTTCAATTCCC+AGG + Chr1:80097374-80097393 MsG0180004593.01.T01:intron 50.0%
GACCATAGGTTTGAGAGGGA+GGG + Chr1:80097610-80097629 MsG0180004593.01.T01:intron 50.0%
GATTTGTCGCCCAACACTGT+TGG + Chr1:80097441-80097460 MsG0180004593.01.T01:intron 50.0%
GCTCCAAAGGGACTCTTGTT+AGG + Chr1:80095280-80095299 MsG0180004593.01.T01:CDS 50.0%
GGAAGTTGGAATTGGGGTTG+AGG - Chr1:80094662-80094681 None:intergenic 50.0%
GGTGATTCTTCGGAATCGAG+AGG - Chr1:80094637-80094656 None:intergenic 50.0%
GGTTTCCAACCCAACAGTGT+TGG - Chr1:80097454-80097473 None:intergenic 50.0%
GTAGATGCGGAAGCCATGAT+CGG - Chr1:80094764-80094783 None:intergenic 50.0%
GTATTCCCTGTGTACGTCCT+TGG - Chr1:80097360-80097379 None:intergenic 50.0%
GTTAGCTGTCTCGAGTGACA+AGG + Chr1:80096215-80096234 MsG0180004593.01.T01:CDS 50.0%
GTTGGAATTGGGGTTGAGGA+TGG - Chr1:80094658-80094677 None:intergenic 50.0%
GTTGTTGCGGCTGCTAATTG+CGG - Chr1:80095952-80095971 None:intergenic 50.0%
TCGTTTCGTTCGGAGGTGAA+AGG + Chr1:80094967-80094986 MsG0180004593.01.T01:CDS 50.0%
TGCCCCCTAAAATGCTATGG+CGG + Chr1:80095585-80095604 MsG0180004593.01.T01:intron 50.0%
TTGGAGGTAGAATTTGGGGG+TGG - Chr1:80094691-80094710 None:intergenic 50.0%
TTGTTGCGGCTGCTAATTGC+GGG - Chr1:80095951-80095970 None:intergenic 50.0%
! ACAGTGTTGGGCGACAAATC+CGG - Chr1:80097441-80097460 None:intergenic 50.0%
! ACCTTATTGGCTGGATAGCG+TGG - Chr1:80094904-80094923 None:intergenic 50.0%
! AGAGTTGTCGTTTCGTTCGG+AGG + Chr1:80094960-80094979 MsG0180004593.01.T01:CDS 50.0%
! AGTGGTTGCGATAGCGGTTT+GGG + Chr1:80095925-80095944 MsG0180004593.01.T01:intron 50.0%
! CCTTATTGGCTGGATAGCGT+GGG - Chr1:80094903-80094922 None:intergenic 50.0%
! CGGAGAGTTGTCGTTTCGTT+CGG + Chr1:80094957-80094976 MsG0180004593.01.T01:CDS 50.0%
! GCTATAGCGGAATAGCGTAG+CGG - Chr1:80096028-80096047 None:intergenic 50.0%
! TAGTGGTTGCGATAGCGGTT+TGG + Chr1:80095924-80095943 MsG0180004593.01.T01:intron 50.0%
! TATTGCAGCGGAAGAGCATG+TGG - Chr1:80094852-80094871 None:intergenic 50.0%
! TGTTTCCAGGTGAGGTTGGT+TGG - Chr1:80094457-80094476 None:intergenic 50.0%
!! CTTCGGAATCGAGAGGCATT+AGG - Chr1:80094630-80094649 None:intergenic 50.0%
!! GAGAGGCATTAGGGTTTGAG+AGG - Chr1:80094620-80094639 None:intergenic 50.0%
!!! CATCAGCCCAGGGTTTTGTT+TGG + Chr1:80096467-80096486 MsG0180004593.01.T01:intron 50.0%
!!! GCCCAGGGTTTTGTTTGGTT+TGG + Chr1:80096472-80096491 MsG0180004593.01.T01:intron 50.0%
!!! TTTTAGCTCAGAGTGGTCCG+TGG + Chr1:80096575-80096594 MsG0180004593.01.T01:CDS 50.0%
CAAATCCGGCTCATGCGTAG+AGG - Chr1:80097427-80097446 None:intergenic 55.0%
CCAATCCAACCAACCTCACC+TGG + Chr1:80094449-80094468 MsG0180004593.01.T01:five_prime_UTR 55.0%
CCACTAGAGCCCAAGCAACT+TGG - Chr1:80097333-80097352 None:intergenic 55.0%
CCACTGTGCAGTGGAAGAGA+AGG - Chr1:80096196-80096215 None:intergenic 55.0%
CCCACGCTATCCAGCCAATA+AGG + Chr1:80094900-80094919 MsG0180004593.01.T01:CDS 55.0%
CCTCCACCTATCCTTCAACC+AGG + Chr1:80094714-80094733 MsG0180004593.01.T01:CDS 55.0%
CCTGGTTGAAGGATAGGTGG+AGG - Chr1:80094717-80094736 None:intergenic 55.0%
CCTTCTCTTCCACTGCACAG+TGG + Chr1:80096193-80096212 MsG0180004593.01.T01:CDS 55.0%
CGGAGTCCTGGTTGAAGGAT+AGG - Chr1:80094723-80094742 None:intergenic 55.0%
CGGCGGAAAATTTCGCGGAA+GGG - Chr1:80094796-80094815 None:intergenic 55.0%
GAAGGATAGGTGGAGGACGT+TGG - Chr1:80094710-80094729 None:intergenic 55.0%
GACAGCTAACCACTGTGCAG+TGG - Chr1:80096205-80096224 None:intergenic 55.0%
GCCTTCCAAGGACGTACACA+GGG + Chr1:80097352-80097371 MsG0180004593.01.T01:intron 55.0%
GCTTGTCCTGGGTTGCAGAA+GGG + Chr1:80095144-80095163 MsG0180004593.01.T01:CDS 55.0%
GGACGTACACAGGGAATACC+GGG + Chr1:80097361-80097380 MsG0180004593.01.T01:intron 55.0%
GGCGGAAAATTTCGCGGAAG+GGG - Chr1:80094795-80094814 None:intergenic 55.0%
GTCTAGTCCTACTAGCCCGT+CGG + Chr1:80096311-80096330 MsG0180004593.01.T01:CDS 55.0%
TACCGGGTTCAATTCCCAGG+GGG + Chr1:80097377-80097396 MsG0180004593.01.T01:intron 55.0%
TCCCTGTGTACGTCCTTGGA+AGG - Chr1:80097356-80097375 None:intergenic 55.0%
TTCCCCCTGGGAATTGAACC+CGG - Chr1:80097382-80097401 None:intergenic 55.0%
! AACGCTTTTGGCCTGCAAGC+TGG - Chr1:80095990-80096009 None:intergenic 55.0%
! CCAAGTTGCTTGGGCTCTAG+TGG + Chr1:80097330-80097349 MsG0180004593.01.T01:intron 55.0%
! CCAGGTGAGGTTGGTTGGAT+TGG - Chr1:80094452-80094471 None:intergenic 55.0%
!! CGGGCTAGTAGGACTAGACT+TGG - Chr1:80096310-80096329 None:intergenic 55.0%
!! GCCATAGCATTTTAGGGGGC+AGG - Chr1:80095586-80095605 None:intergenic 55.0%
AAAGAGACGAAGCCGCCGAC+GGG - Chr1:80096329-80096348 None:intergenic 60.0%
ACTAAGCCAATTCCGCCGCC+GGG - Chr1:80094829-80094848 None:intergenic 60.0%
ATCCTCGCTTTCGTCGGTGG+CGG + Chr1:80094871-80094890 MsG0180004593.01.T01:CDS 60.0%
CGGAATAGCGTAGCGGTGCT+GGG - Chr1:80096021-80096040 None:intergenic 60.0%
GAAAGAGACGAAGCCGCCGA+CGG - Chr1:80096330-80096349 None:intergenic 60.0%
GACTAAGCCAATTCCGCCGC+CGG - Chr1:80094830-80094849 None:intergenic 60.0%
GCATGCCTCTACGCATGAGC+CGG + Chr1:80097419-80097438 MsG0180004593.01.T01:intron 60.0%
GCGGCGGAAAATTTCGCGGA+AGG - Chr1:80094797-80094816 None:intergenic 60.0%
GGATAGGTGGAGGACGTTGG+AGG - Chr1:80094707-80094726 None:intergenic 60.0%
GGCCTTCCAAGGACGTACAC+AGG + Chr1:80097351-80097370 MsG0180004593.01.T01:intron 60.0%
GGCTTGTCCTGGGTTGCAGA+AGG + Chr1:80095143-80095162 MsG0180004593.01.T01:CDS 60.0%
GGGCAGGTGCGACACTATCT+AGG - Chr1:80095570-80095589 None:intergenic 60.0%
GTCGCCCAACACTGTTGGGT+TGG + Chr1:80097446-80097465 MsG0180004593.01.T01:intron 60.0%
GTGCAGTGGAAGAGAAGGCG+AGG - Chr1:80096191-80096210 None:intergenic 60.0%
TAGTCCTACTAGCCCGTCGG+CGG + Chr1:80096314-80096333 MsG0180004593.01.T01:CDS 60.0%
TTCCCAGGGGGAACAACGCT+TGG + Chr1:80097389-80097408 MsG0180004593.01.T01:intron 60.0%
! AGCCAAGCGTTGTTCCCCCT+GGG - Chr1:80097394-80097413 None:intergenic 60.0%
! GGGGGTGGATTTGGGGAAGT+TGG - Chr1:80094676-80094695 None:intergenic 60.0%
! TAGCCAAGCGTTGTTCCCCC+TGG - Chr1:80097395-80097414 None:intergenic 60.0%
! TAGCGTAGCGGTGCTGGGTT+CGG - Chr1:80096016-80096035 None:intergenic 60.0%
! TGGGCTCTAGTGGCCTTCCA+AGG + Chr1:80097340-80097359 MsG0180004593.01.T01:intron 60.0%
! TGGGTTCGGCGCAACGCTTT+TGG - Chr1:80096002-80096021 None:intergenic 60.0%
!! TTCCGCCGCGATTTTGGTCC+CGG + Chr1:80094808-80094827 MsG0180004593.01.T01:CDS 60.0%
ATCCGCCACCGACGAAAGCG+AGG - Chr1:80094876-80094895 None:intergenic 65.0%
GCAGCCGGAGTCCTGGTTGA+AGG - Chr1:80094728-80094747 None:intergenic 65.0%
GCGGAAGCCATGATCGGTGC+CGG - Chr1:80094758-80094777 None:intergenic 65.0%
GCGGAATAGCGTAGCGGTGC+TGG - Chr1:80096022-80096041 None:intergenic 65.0%
TTTGGTCCCGGCGGCGGAAT+TGG + Chr1:80094820-80094839 MsG0180004593.01.T01:CDS 65.0%
!! GAAGCCATGATCGGTGCCGG+CGG - Chr1:80094755-80094774 None:intergenic 65.0%
!! TTTGCCGCCGGCACCGATCA+TGG + Chr1:80094748-80094767 MsG0180004593.01.T01:CDS 65.0%
CGCCGCCGGGACCAAAATCG+CGG - Chr1:80094816-80094835 None:intergenic 70.0%
CGCCGGGACCAAAATCGCGG+CGG - Chr1:80094813-80094832 None:intergenic 70.0%
CGGCAAAGCAGCCGGAGTCC+TGG - Chr1:80094735-80094754 None:intergenic 70.0%
! GACTCCGGCTGCTTTGCCGC+CGG + Chr1:80094736-80094755 MsG0180004593.01.T01:CDS 70.0%
!! CGCCGCGATTTTGGTCCCGG+CGG + Chr1:80094811-80094830 MsG0180004593.01.T01:CDS 70.0%
!! CGCGATTTTGGTCCCGGCGG+CGG + Chr1:80094814-80094833 MsG0180004593.01.T01:CDS 70.0%
!! GAAGCCGCCGACGGGCTAGT+AGG - Chr1:80096321-80096340 None:intergenic 70.0%
!! GGTGCCGGCGGCAAAGCAGC+CGG - Chr1:80094743-80094762 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 80094436 80098130 80094436 ID=MsG0180004593.01;Name=MsG0180004593.01
Chr1 mRNA 80094436 80098130 80094436 ID=MsG0180004593.01.T01;Parent=MsG0180004593.01;Name=MsG0180004593.01.T01;_AED=0.34;_eAED=0.34;_QI=171|1|1|1|1|1|4|250|385
Chr1 exon 80094436 80095338 80094436 ID=MsG0180004593.01.T01:exon:45741;Parent=MsG0180004593.01.T01
Chr1 exon 80096153 80096360 80096153 ID=MsG0180004593.01.T01:exon:45742;Parent=MsG0180004593.01.T01
Chr1 exon 80096559 80096685 80096559 ID=MsG0180004593.01.T01:exon:45743;Parent=MsG0180004593.01.T01
Chr1 exon 80097790 80098130 80097790 ID=MsG0180004593.01.T01:exon:45744;Parent=MsG0180004593.01.T01
Chr1 five_prime_UTR 80094436 80094606 80094436 ID=MsG0180004593.01.T01:five_prime_utr;Parent=MsG0180004593.01.T01
Chr1 CDS 80094607 80095338 80094607 ID=MsG0180004593.01.T01:cds;Parent=MsG0180004593.01.T01
Chr1 CDS 80096153 80096360 80096153 ID=MsG0180004593.01.T01:cds;Parent=MsG0180004593.01.T01
Chr1 CDS 80096559 80096685 80096559 ID=MsG0180004593.01.T01:cds;Parent=MsG0180004593.01.T01
Chr1 CDS 80097790 80097880 80097790 ID=MsG0180004593.01.T01:cds;Parent=MsG0180004593.01.T01
Chr1 three_prime_UTR 80097881 80098130 80097881 ID=MsG0180004593.01.T01:three_prime_utr;Parent=MsG0180004593.01.T01
Gene Sequence

>MsG0180004593.01.T01

ATGTCTCAAACCTCTCAAACCCTAATGCCTCTCGATTCCGAAGAATCACCATCCTCAACCCCAATTCCAACTTCCCCAAATCCACCCCCAAATTCTACCTCCAACGTCCTCCACCTATCCTTCAACCAGGACTCCGGCTGCTTTGCCGCCGGCACCGATCATGGCTTCCGCATCTACAACTGTGACCCCTTCCGCGAAATTTTCCGCCGCGATTTTGGTCCCGGCGGCGGAATTGGCTTAGTCCACATGCTCTTCCGCTGCAATATCCTCGCTTTCGTCGGTGGCGGATCAGACCCACGCTATCCAGCCAATAAGGTGATGATTTGGGACGATCATCAATCACGGTGTATCGGAGAGTTGTCGTTTCGTTCGGAGGTGAAAGGTGTTCGTCTTCGTCGCGATAGAATCGTCGTTGTTTTGGCGCATAAGATTTTTGTTTACAATTTTGCTGATCTTAAAGTTCTTCATCAAATTGAAACTATTGCTAACCCTACGGGGCTATGTGAAGTTTCACATGTTTCGGGAACTATGGTTTTGGCTTGTCCTGGGTTGCAGAAGGGTCAAATTAGGGTTGAACATTATGCTTCTAAGAGAACTAAGTTCATAATGGCACATGATTCGAGAATTGCGTGTTTTGCTATAACCCAAGATGGTCGTTTGCTTGCTACTGCAAGCTCCAAAGGGACTCTTGTTAGGGTTTTCAATACCTTGGATGGTTCTTTGCTTCAAGAGGTACGGAGAGGTGCTGACCGAGCCGAGATATATAGCCTCGCCTTCTCTTCCACTGCACAGTGGTTAGCTGTCTCGAGTGACAAGGGAACCGTTCATGTCTTCAACCTGAAGGTTGATTCGGGATTGTTGGGGCACGACAGATCGCATCCTACATCCAAGTCTAGTCCTACTAGCCCGTCGGCGGCTTCGTCTCTTTCATTTATTAGAGGTGTGTTACCTAAGTATTTTAGCTCAGAGTGGTCCGTGGCTCAATTTCGCTTGCAAGAAGGTTTACAATATCATGTTGCCTTCGGTCATCAGAAAAATACAATTGTAATACTTGGCATGGATGGCAGCTTCTATCGATGTCAATTTGACACTGCAACTGGTGGGGAGATGACACAACTCGAGTATTACAATTTCCTAAAGCCAGAAGAGACATTCTAG
Protein sequence

>MsG0180004593.01.T01

MSQTSQTLMPLDSEESPSSTPIPTSPNPPPNSTSNVLHLSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDFGPGGGIGLVHMLFRCNILAFVGGGSDPRYPANKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPTGLCEVSHVSGTMVLACPGLQKGQIRVEHYASKRTKFIMAHDSRIACFAITQDGRLLATASSKGTLVRVFNTLDGSLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHPTSKSSPTSPSAASSLSFIRGVLPKYFSSEWSVAQFRLQEGLQYHVAFGHQKNTIVILGMDGSFYRCQFDTATGGEMTQLEYYNFLKPEETF*