AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005196.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005196.01.T01 MTR_1g094890 92.224 733 17 2 1 709 1 717 0.0 1386
MsG0180005196.01.T01 MTR_2g094620 57.296 747 246 9 1 709 16 727 0.0 848
MsG0180005196.01.T01 MTR_2g094620 53.815 747 238 10 1 709 16 693 0.0 776
MsG0180005196.01.T01 MTR_2g094620 55.394 686 233 9 1 648 16 666 0.0 744
MsG0180005196.01.T01 MTR_5g027200 30.559 769 408 15 2 705 8 715 4.33e-110 350
MsG0180005196.01.T01 MTR_5g027200 30.519 770 408 16 2 705 8 716 7.52e-109 347
MsG0180005196.01.T01 MTR_4g116840 26.623 770 436 20 3 705 26 733 1.62e-77 263
MsG0180005196.01.T01 MTR_2g449780 26.873 774 430 21 3 705 28 736 1.34e-76 261
MsG0180005196.01.T01 MTR_3g105780 35.714 238 130 4 477 707 43 264 1.80e-46 167
MsG0180005196.01.T01 MTR_4g067360 33.613 238 137 3 477 709 35 256 1.28e-43 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005196.01.T01 AT3G54800 57.728 757 232 15 1 705 10 730 0.0 836
MsG0180005196.01.T01 AT3G54800 57.728 757 232 15 1 705 10 730 0.0 836
MsG0180005196.01.T01 AT2G28320 55.968 754 258 11 1 709 13 737 0.0 830
MsG0180005196.01.T01 AT5G45560 31.388 771 403 21 2 708 7 715 1.04e-110 351
MsG0180005196.01.T01 AT4G19040 32.391 778 385 23 2 708 7 714 2.90e-110 350
MsG0180005196.01.T01 AT4G19040 32.394 781 386 24 2 708 7 719 7.11e-110 349
MsG0180005196.01.T01 AT4G19040 32.394 781 383 25 2 708 7 716 2.66e-109 348
MsG0180005196.01.T01 AT5G45560 34.365 614 315 17 123 708 73 626 8.66e-97 312
MsG0180005196.01.T01 AT5G35180 39.749 239 122 3 467 705 562 778 1.07e-53 198
MsG0180005196.01.T01 AT5G35180 39.749 239 122 3 467 705 558 774 1.14e-53 198
MsG0180005196.01.T01 AT5G35180 21.594 389 229 8 3 326 62 439 1.79e-20 97.1
MsG0180005196.01.T01 AT5G35180 39.749 239 122 3 467 705 558 774 1.30e-53 198
MsG0180005196.01.T01 AT5G35180 21.594 389 229 8 3 326 62 439 1.92e-20 97.1
MsG0180005196.01.T01 AT5G35180 39.749 239 122 3 467 705 591 807 1.66e-53 198
MsG0180005196.01.T01 AT5G10750 36.078 255 138 7 462 708 38 275 1.40e-47 171
MsG0180005196.01.T01 AT1G06050 33.333 249 142 4 465 707 26 256 1.41e-45 165
MsG0180005196.01.T01 AT5G24990 32.489 237 139 7 477 708 50 270 4.79e-40 149
MsG0180005196.01.T01 AT5G25010 32.203 236 140 5 477 708 50 269 1.01e-39 148
MsG0180005196.01.T01 AT5G25020 29.185 233 116 7 477 705 51 238 4.74e-27 111
MsG0180005196.01.T01 AT5G35180 21.337 389 230 8 3 326 62 439 2.39e-20 96.3

Find 130 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGGTCGCATCAGTTTAA+TGG 0.200369 1:+88315540 MsG0180005196.01.T01:CDS
GAAGTTATGGAAACTATATT+TGG 0.201344 1:+88315020 MsG0180005196.01.T01:CDS
ATATGTTGCAGTTCATAAAA+AGG 0.207690 1:+88315811 MsG0180005196.01.T01:intron
ATATCCTTTGTCATTGTAAT+AGG 0.234874 1:-88315400 None:intergenic
ACATAATTCTTAGCTGGATT+TGG 0.263542 1:-88312758 None:intergenic
TCAACAAAGCTGTGCAATAA+TGG 0.293725 1:-88316670 None:intergenic
TCTTGGATATCTGAACAATT+TGG 0.296392 1:+88317320 MsG0180005196.01.T01:CDS
GCTGATACCATATATTTCTA+AGG 0.305926 1:+88316726 MsG0180005196.01.T01:CDS
CCCGGTCGCATCAGTTTAAT+GGG 0.306673 1:+88315541 MsG0180005196.01.T01:CDS
GACTGAGTTCCTTTGTTAAC+AGG 0.310113 1:-88314967 None:intergenic
TTGTTAACCTTAGAAATATA+TGG 0.311862 1:-88316733 None:intergenic
CTCCATTTGTGAAGTGGGTT+TGG 0.313357 1:-88311817 None:intergenic
TTCTTTACAGTAACAGTAAC+AGG 0.313766 1:-88315430 None:intergenic
ATGCTATACATGGGACTTCC+TGG 0.320064 1:-88316607 None:intergenic
GTGCAAGGTAAAGTACAATT+TGG 0.323211 1:-88315908 None:intergenic
GAAAGTGCATCATGCTCTTA+TGG 0.330713 1:+88315866 MsG0180005196.01.T01:CDS
TTTATCTCATTCGTTCTAAT+CGG 0.333140 1:+88311727 MsG0180005196.01.T01:CDS
TTCGAGCATACGAATGGTTA+TGG 0.354056 1:-88315061 None:intergenic
CACGTTCCGATGAGGACTTC+AGG 0.356504 1:-88317498 None:intergenic
AAATCAAAGGGATAAGCTTA+AGG 0.360055 1:+88312494 MsG0180005196.01.T01:CDS
TGATCATGTTCTGTTGGTTC+AGG 0.362235 1:-88315595 None:intergenic
AGGATTCACTCCAATTGCTT+TGG 0.363876 1:-88317544 None:intergenic
ATTTACTGTTACAAAGATAC+TGG 0.369247 1:+88314203 MsG0180005196.01.T01:CDS
TCCACGTGAATCCGAACATT+TGG 0.372297 1:-88313313 None:intergenic
AAAAGAAAATACCTGAACTA+TGG 0.380349 1:-88316336 None:intergenic
ACCTCCAGTTGTACAATGAT+TGG 0.384206 1:+88314056 MsG0180005196.01.T01:CDS
GATCAAGAGACATAAGAGTA+TGG 0.393993 1:-88313496 None:intergenic
GGGTGAGCAATCGGCAATAA+TGG 0.394680 1:+88313436 MsG0180005196.01.T01:CDS
CGTATGCTCGAACGAATTGC+AGG 0.395455 1:+88315072 MsG0180005196.01.T01:CDS
TTTGCTTCTCTTAGGGATCA+TGG 0.399419 1:+88316985 MsG0180005196.01.T01:intron
GAACAATTTGGTGGTAGAAA+TGG 0.403124 1:+88317332 MsG0180005196.01.T01:CDS
GGAGTGGCAAGCCTAGTTCT+TGG 0.412972 1:+88317303 MsG0180005196.01.T01:CDS
TCGTCCCGGTTCCATAGTTC+AGG 0.423567 1:+88316325 MsG0180005196.01.T01:CDS
AAATACCTGAACTATGGAAC+CGG 0.424213 1:-88316330 None:intergenic
GCAACCAATCATTGTACAAC+TGG 0.426699 1:-88314060 None:intergenic
TGTTGGAAAGAAAGCATGTT+TGG 0.426851 1:+88317022 MsG0180005196.01.T01:CDS
TGCAATTAGTAGGTGCAGAT+TGG 0.428717 1:+88316267 MsG0180005196.01.T01:CDS
ATGGCAGTTGGTGTCGTTGA+TGG 0.436476 1:+88313455 MsG0180005196.01.T01:CDS
GACCAAACCCACTTCACAAA+TGG 0.438386 1:+88311815 MsG0180005196.01.T01:CDS
ATGGATGCATCCAAAGCAAT+TGG 0.439239 1:+88317534 MsG0180005196.01.T01:CDS
AAAGTCACATAATTCTTAGC+TGG 0.448325 1:-88312764 None:intergenic
TCTATCATTGCACTTCTCAT+TGG 0.448934 1:-88312286 None:intergenic
ATTCAGAAATATGCAGCAAA+AGG 0.449354 1:+88316455 MsG0180005196.01.T01:intron
CTTTGTAACAGTAAATCTCT+TGG 0.452744 1:-88314196 None:intergenic
AAGTTATGGAAACTATATTT+GGG 0.454979 1:+88315021 MsG0180005196.01.T01:CDS
TTACTATTGACTGGAAGTTA+TGG 0.464393 1:+88315007 MsG0180005196.01.T01:CDS
AGAAAAGGCGTTCAAGTTTG+AGG 0.465195 1:+88312792 MsG0180005196.01.T01:CDS
TGATTTCTTGTGCAGGACTA+AGG 0.472698 1:+88313277 MsG0180005196.01.T01:intron
GTGGATGACAAAGAAATTCC+CGG 0.475698 1:+88315523 MsG0180005196.01.T01:CDS
GACATATGCTTACTATTGAC+TGG 0.479067 1:+88314998 MsG0180005196.01.T01:CDS
TATTAGCTTGACATCGATGT+TGG 0.479916 1:+88317261 MsG0180005196.01.T01:intron
TCAGCATTGGGGTGAGCAAT+CGG 0.481297 1:+88313427 MsG0180005196.01.T01:intron
TTATTGCACAGCTTTGTTGA+AGG 0.484937 1:+88316673 MsG0180005196.01.T01:CDS
TATATAATACTTCAAATCAA+AGG 0.485323 1:+88312481 MsG0180005196.01.T01:CDS
TGTTCAGATATCCAAGAACT+AGG 0.489459 1:-88317314 None:intergenic
TGGATAGTCAAGCAAAGTGT+TGG 0.490924 1:+88317005 MsG0180005196.01.T01:CDS
TTTACCTCCATTTGTGAAGT+GGG 0.493279 1:-88311822 None:intergenic
ATATAATACTTCAAATCAAA+GGG 0.494674 1:+88312482 MsG0180005196.01.T01:CDS
CTTGGCAGGTGGAGGATTTG+TGG 0.496615 1:+88314939 MsG0180005196.01.T01:intron
AAGACTTACTCGGATCTTGA+GGG 0.506489 1:-88313518 None:intergenic
GTTCAAAGAAGCCAAATGTT+CGG 0.506985 1:+88313302 MsG0180005196.01.T01:CDS
GAGTTGTATAGAACAAAAGT+AGG 0.509161 1:+88315364 MsG0180005196.01.T01:CDS
GAAGACTTACTCGGATCTTG+AGG 0.509467 1:-88313519 None:intergenic
AATAATGGATTGTCTTCTAA+AGG 0.510544 1:-88316655 None:intergenic
TCATAGTGATCATGTTCTGT+TGG 0.511286 1:-88315601 None:intergenic
ATTGTACTTTACCTTGCACC+TGG 0.514435 1:+88315912 MsG0180005196.01.T01:CDS
TCCCATTAAACTGATGCGAC+CGG 0.515579 1:-88315542 None:intergenic
CCCATTAAACTGATGCGACC+GGG 0.518042 1:-88315541 None:intergenic
AACGTGTCGACTAAATCATA+TGG 0.524701 1:+88317515 MsG0180005196.01.T01:CDS
ATGATCACTATGATAATCAA+TGG 0.526976 1:+88315611 MsG0180005196.01.T01:CDS
TGTAACGTATTTCTAGTGCT+TGG 0.529027 1:-88317049 None:intergenic
CTAGAAATACGTTACATTCG+TGG 0.530261 1:+88317056 MsG0180005196.01.T01:CDS
TTCGTGTTACTGACAATGGA+AGG 0.532475 1:+88312317 MsG0180005196.01.T01:CDS
TGAGAATAAGAGCAAAATTG+AGG 0.538665 1:+88315477 MsG0180005196.01.T01:CDS
ATTTACCTCCATTTGTGAAG+TGG 0.538905 1:-88311823 None:intergenic
AATATTCGTGTTACTGACAA+TGG 0.540689 1:+88312313 MsG0180005196.01.T01:CDS
CATCGATGTTGGATCTTCGA+CGG 0.541198 1:+88317272 MsG0180005196.01.T01:CDS
ACGTTCCGATGAGGACTTCA+GGG 0.544008 1:-88317497 None:intergenic
ATGTTATTGCACCTTCCCAA+TGG 0.544472 1:+88313149 MsG0180005196.01.T01:CDS
ATCGTGGTTGATCACATAGA+TGG 0.546493 1:+88314016 MsG0180005196.01.T01:CDS
TGGATATCTGAACAATTTGG+TGG 0.549690 1:+88317323 MsG0180005196.01.T01:CDS
GGACTTGCACGAGGTAGCTA+AGG 0.550652 1:+88315841 MsG0180005196.01.T01:CDS
AGGTCATACTCACTTGTATG+TGG 0.553752 1:-88316502 None:intergenic
AGAGAGGATGATGGCACATA+CGG 0.561006 1:+88314229 MsG0180005196.01.T01:CDS
TTATTTACAAGACCATCAAA+AGG 0.569025 1:+88315976 MsG0180005196.01.T01:CDS
AATGTTCGGATTCACGTGGA+AGG 0.569985 1:+88313316 MsG0180005196.01.T01:CDS
CAAAATTGAGGAACTAGTTG+AGG 0.570775 1:+88315489 MsG0180005196.01.T01:CDS
TGTTGTTGAAACAGATATGG+AGG 0.571331 1:+88313052 MsG0180005196.01.T01:intron
TGTTACTGTTACTGTAAAGA+AGG 0.572045 1:+88315432 MsG0180005196.01.T01:CDS
GGAAAGAAAGCATGTTTGGT+TGG 0.573407 1:+88317026 MsG0180005196.01.T01:CDS
TCAGAAGGAGCCCAGGTGCA+AGG 0.573899 1:-88315923 None:intergenic
CAGAAATATGCAGCAAAAGG+TGG 0.574277 1:+88316458 MsG0180005196.01.T01:intron
CATCTTCTCGTGTGTTACAT+CGG 0.574784 1:-88316292 None:intergenic
ATAGAGTGCAATGCTATACA+TGG 0.576341 1:-88316617 None:intergenic
GACACCTTGATGCAATTAGT+AGG 0.581791 1:+88316257 MsG0180005196.01.T01:CDS
ACAAAACTACCAGCTGGTGA+TGG 0.582686 1:-88315661 None:intergenic
AGATGGATCAGAAGGAGCCC+AGG 0.583628 1:-88315930 None:intergenic
CAATCGGCAATAATGGCAGT+TGG 0.589692 1:+88313443 MsG0180005196.01.T01:CDS
TGCACCTACTAATTGCATCA+AGG 0.589805 1:-88316261 None:intergenic
AGTTGAGGTGAAAGATCAAG+TGG 0.590119 1:+88315504 MsG0180005196.01.T01:CDS
TTGTACTTTACCTTGCACCT+GGG 0.592764 1:+88315913 MsG0180005196.01.T01:CDS
GAACACAAACCATCACCAGC+TGG 0.594373 1:+88315652 MsG0180005196.01.T01:CDS
TACTGGAGAAGAGAGGATGA+TGG 0.596138 1:+88314220 MsG0180005196.01.T01:CDS
CTTGCACGAGGTAGCTAAGG+AGG 0.609208 1:+88315844 MsG0180005196.01.T01:CDS
GGATCTTCGACGGTTGCAAG+AGG 0.610239 1:+88317282 MsG0180005196.01.T01:CDS
CAAACCCACTTCACAAATGG+AGG 0.613175 1:+88311818 MsG0180005196.01.T01:CDS
AATTCGTTCGAGCATACGAA+TGG 0.616616 1:-88315067 None:intergenic
GATGATTTGAGTAGTCGTCC+CGG 0.617920 1:+88316311 MsG0180005196.01.T01:CDS
GCATTATTCATTCAGCATTG+GGG 0.618216 1:+88313416 MsG0180005196.01.T01:intron
GTTCAGAAGAAGCTGCAAAG+TGG 0.623466 1:+88312619 MsG0180005196.01.T01:CDS
ACCAATCATTGTACAACTGG+AGG 0.625900 1:-88314057 None:intergenic
GAGCTCCCTGAAGTCCTCAT+CGG 0.626666 1:+88317492 MsG0180005196.01.T01:CDS
AACAAAAGTAGGAAACTACT+CGG 0.626808 1:+88315375 MsG0180005196.01.T01:CDS
TGTCGTTGATGGAACTTCAG+AGG 0.629066 1:+88313466 MsG0180005196.01.T01:CDS
GTGGTGACTCCTGTTAACAA+AGG 0.634656 1:+88314958 MsG0180005196.01.T01:CDS
ATGTTCGGATTCACGTGGAA+GGG 0.638257 1:+88313317 MsG0180005196.01.T01:CDS
GGAACCTATTACAATGACAA+AGG 0.639698 1:+88315396 MsG0180005196.01.T01:CDS
AATACCTGAACTATGGAACC+GGG 0.643457 1:-88316329 None:intergenic
TGTACAATGATTGGTTGCCA+TGG 0.644662 1:+88314065 MsG0180005196.01.T01:CDS
TCGTGTTACTGACAATGGAA+GGG 0.646689 1:+88312318 MsG0180005196.01.T01:CDS
GGAAGGTGCAATAACATCAG+AGG 0.652876 1:-88313143 None:intergenic
TTAGTCGACACGTTCCGATG+AGG 0.655299 1:-88317506 None:intergenic
TAGAGTGCAATGCTATACAT+GGG 0.659795 1:-88316616 None:intergenic
GTTGTTGAAACAGATATGGA+GGG 0.662233 1:+88313053 MsG0180005196.01.T01:intron
ACAAAGATACTGGAGAAGAG+AGG 0.662444 1:+88314213 MsG0180005196.01.T01:CDS
TTCGACGGTTGCAAGAGGAG+TGG 0.666728 1:+88317287 MsG0180005196.01.T01:CDS
TTGTATACATCGAGGCATCG+TGG 0.680442 1:+88314000 MsG0180005196.01.T01:CDS
GGGTTACATGGACTTGCACG+AGG 0.685068 1:+88315832 MsG0180005196.01.T01:CDS
GCCAAATGTTCGGATTCACG+TGG 0.686409 1:+88313312 MsG0180005196.01.T01:CDS
TCGTGGCAAGAACTATCTAG+AGG 0.690009 1:+88317073 MsG0180005196.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAATAATCAAGATATA+AGG - Chr1:88316525-88316544 None:intergenic 10.0%
!! AAATTCCATATATTTATAGT+TGG + Chr1:88312587-88312606 MsG0180005196.01.T01:intron 15.0%
!! AATATTTGTTTCCTAAAATT+TGG + Chr1:88314848-88314867 MsG0180005196.01.T01:intron 15.0%
!! AATTCCATATATTTATAGTT+GGG + Chr1:88312588-88312607 MsG0180005196.01.T01:intron 15.0%
!! ATATAATACTTCAAATCAAA+GGG + Chr1:88312482-88312501 MsG0180005196.01.T01:CDS 15.0%
!! ATATACTGGAAATAATATAT+AGG + Chr1:88314646-88314665 MsG0180005196.01.T01:intron 15.0%
!! ATATTATGCTAACATTTAAA+TGG + Chr1:88317226-88317245 MsG0180005196.01.T01:intron 15.0%
!! TATACTGGAAATAATATATA+GGG + Chr1:88314647-88314666 MsG0180005196.01.T01:intron 15.0%
!! TATATAATACTTCAAATCAA+AGG + Chr1:88312481-88312500 MsG0180005196.01.T01:CDS 15.0%
!! TCATAAAATCATTTAAAAAG+TGG - Chr1:88315769-88315788 None:intergenic 15.0%
!!! AGTTCAAATTTTTCTTTTTT+AGG + Chr1:88316223-88316242 MsG0180005196.01.T01:intron 15.0%
!!! ATATGAATGGTATTATTTTT+AGG + Chr1:88311918-88311937 MsG0180005196.01.T01:intron 15.0%
!!! ATTCTATTTTGTATTTGTTT+AGG - Chr1:88313875-88313894 None:intergenic 15.0%
!!! TAAATGATTTTATGAAAAAG+TGG + Chr1:88315774-88315793 MsG0180005196.01.T01:intron 15.0%
!!! TTTACCAATTTTAAACTTAT+AGG + Chr1:88316002-88316021 MsG0180005196.01.T01:intron 15.0%
!! AAAAGACAAATTAGCAATAA+AGG + Chr1:88313647-88313666 MsG0180005196.01.T01:intron 20.0%
!! AAGTTATGGAAACTATATTT+GGG + Chr1:88315021-88315040 MsG0180005196.01.T01:CDS 20.0%
!! AATAGATTGTTATGATTGTT+TGG + Chr1:88312086-88312105 MsG0180005196.01.T01:intron 20.0%
!! ACAAAAAAGTAAGAAACTTT+AGG + Chr1:88312350-88312369 MsG0180005196.01.T01:intron 20.0%
!! ATACTGGAAATAATATATAG+GGG + Chr1:88314648-88314667 MsG0180005196.01.T01:intron 20.0%
!! CCAAATATCTAAATATTTGA+AGG - Chr1:88314764-88314783 None:intergenic 20.0%
!! CCTTCAAATATTTAGATATT+TGG + Chr1:88314761-88314780 MsG0180005196.01.T01:intron 20.0%
!! GATTTATTTATGTATTCACT+TGG + Chr1:88311991-88312010 MsG0180005196.01.T01:intron 20.0%
!! GTAGAAATAGTTAATCAATA+TGG + Chr1:88317369-88317388 MsG0180005196.01.T01:intron 20.0%
!! TAGTAATACTTGTTCAATTA+AGG - Chr1:88312126-88312145 None:intergenic 20.0%
!! TGGAAGGATTAAATAATTAA+TGG - Chr1:88312833-88312852 None:intergenic 20.0%
!! TTAATTGAACAAGTATTACT+AGG + Chr1:88312125-88312144 MsG0180005196.01.T01:intron 20.0%
!! TTATGTTATACTACAAACTA+TGG + Chr1:88313012-88313031 MsG0180005196.01.T01:intron 20.0%
!! TTGTTAACCTTAGAAATATA+TGG - Chr1:88316736-88316755 None:intergenic 20.0%
!! TTTCTCAATTAGAATACTTT+GGG + Chr1:88315724-88315743 MsG0180005196.01.T01:intron 20.0%
!! TTTGTAAGTATATAAGAAAG+AGG - Chr1:88317170-88317189 None:intergenic 20.0%
!!! AATTCAAACAGATTTTTTAG+TGG + Chr1:88312532-88312551 MsG0180005196.01.T01:intron 20.0%
!!! AATTTTTCTTTTTTAGGTCA+AGG + Chr1:88316229-88316248 MsG0180005196.01.T01:intron 20.0%
!!! AGGAAACAAATATTGATTTT+AGG - Chr1:88314842-88314861 None:intergenic 20.0%
!!! ATTTAATTCTATGATGGATT+TGG - Chr1:88316188-88316207 None:intergenic 20.0%
!!! CAAAACATTTGTGTTATTTT+AGG - Chr1:88314881-88314900 None:intergenic 20.0%
!!! GATTTTTTAACAAAATCTTG+AGG - Chr1:88314740-88314759 None:intergenic 20.0%
!!! TAAAGCATACATTACTTTTA+AGG - Chr1:88314407-88314426 None:intergenic 20.0%
!!! TACTCCTATAAGTTTAAAAT+TGG - Chr1:88316009-88316028 None:intergenic 20.0%
!!! TGAATTTGAAACAAAATTGT+AGG + Chr1:88316799-88316818 MsG0180005196.01.T01:intron 20.0%
! AAAAATAAAGATGGATCAGA+AGG - Chr1:88315941-88315960 None:intergenic 25.0%
! AAAAGAAAATACCTGAACTA+TGG - Chr1:88316339-88316358 None:intergenic 25.0%
! AATAGAACCATAAAGTGATT+TGG - Chr1:88313544-88313563 None:intergenic 25.0%
! AATTTCGCACTTATCTTTAA+CGG + Chr1:88315146-88315165 MsG0180005196.01.T01:intron 25.0%
! ATAAGATGAAAAGGAGAAAA+TGG - Chr1:88312853-88312872 None:intergenic 25.0%
! ATATCCTTTGTCATTGTAAT+AGG - Chr1:88315403-88315422 None:intergenic 25.0%
! ATATGTTGCAGTTCATAAAA+AGG + Chr1:88315811-88315830 MsG0180005196.01.T01:intron 25.0%
! ATCTTATTCACTTGAATACA+TGG + Chr1:88314690-88314709 MsG0180005196.01.T01:intron 25.0%
! ATGATCACTATGATAATCAA+TGG + Chr1:88315611-88315630 MsG0180005196.01.T01:CDS 25.0%
! ATTTACTGTTACAAAGATAC+TGG + Chr1:88314203-88314222 MsG0180005196.01.T01:CDS 25.0%
! ATTTCTTATCATATGTGCTT+TGG + Chr1:88316422-88316441 MsG0180005196.01.T01:intron 25.0%
! CGTAAACAAGAAAATATGAA+TGG + Chr1:88311905-88311924 MsG0180005196.01.T01:intron 25.0%
! GAAGTTATGGAAACTATATT+TGG + Chr1:88315020-88315039 MsG0180005196.01.T01:CDS 25.0%
! GAGGAACAAAAATAATTAAC+AGG - Chr1:88317151-88317170 None:intergenic 25.0%
! GATATATTGCAGCATATAAT+AGG + Chr1:88314485-88314504 MsG0180005196.01.T01:intron 25.0%
! GTCTGTGAATATATAATATG+TGG - Chr1:88314105-88314124 None:intergenic 25.0%
! GTTTCTCAATTAGAATACTT+TGG + Chr1:88315723-88315742 MsG0180005196.01.T01:intron 25.0%
! TAACTCAAGTAGAAAATGAA+AGG - Chr1:88316363-88316382 None:intergenic 25.0%
! TATCTCATCAAATATGTGTA+GGG + Chr1:88314165-88314184 MsG0180005196.01.T01:intron 25.0%
! TATGTTGCAGTTCATAAAAA+GGG + Chr1:88315812-88315831 MsG0180005196.01.T01:intron 25.0%
! TATTAAGCACCTTTAAGTAT+TGG + Chr1:88316546-88316565 MsG0180005196.01.T01:intron 25.0%
! TGGATAACAAAAAAGAATTC+TGG - Chr1:88316485-88316504 None:intergenic 25.0%
! TGGTTGAATTAGATATATAC+TGG + Chr1:88314632-88314651 MsG0180005196.01.T01:intron 25.0%
! TTACAAACACACATACATAA+TGG + Chr1:88317183-88317202 MsG0180005196.01.T01:intron 25.0%
! TTAGTGCTACAAAAAAAGAA+AGG - Chr1:88315342-88315361 None:intergenic 25.0%
! TTATCTCATCAAATATGTGT+AGG + Chr1:88314164-88314183 MsG0180005196.01.T01:intron 25.0%
! TTATTTACAAGACCATCAAA+AGG + Chr1:88315976-88315995 MsG0180005196.01.T01:CDS 25.0%
! TTTATCTCATTCGTTCTAAT+CGG + Chr1:88311727-88311746 MsG0180005196.01.T01:CDS 25.0%
!! ATTGGTAAAATACCTTTTGA+TGG - Chr1:88315991-88316010 None:intergenic 25.0%
!! ATTTAGATATTTGGAACACA+AGG + Chr1:88314770-88314789 MsG0180005196.01.T01:intron 25.0%
!! GATATTCAAGTTCTTATTTG+TGG + Chr1:88313752-88313771 MsG0180005196.01.T01:intron 25.0%
!! TAAATTTGTTTGCAATTCAC+AGG + Chr1:88312440-88312459 MsG0180005196.01.T01:intron 25.0%
!! TAGCATTTAAGTTCAAATGA+AGG - Chr1:88314457-88314476 None:intergenic 25.0%
!! TAGGCATTTTTCCAAATTTT+AGG - Chr1:88314862-88314881 None:intergenic 25.0%
!! TGAAGCATTATAAGATGAAA+AGG - Chr1:88312862-88312881 None:intergenic 25.0%
!! TGTTGATTGTGATAAATGAA+TGG + Chr1:88312242-88312261 MsG0180005196.01.T01:intron 25.0%
!! TTATTCTCTGTGTATTTTTC+AGG + Chr1:88312730-88312749 MsG0180005196.01.T01:intron 25.0%
!! TTTAGATATTTGGAACACAA+GGG + Chr1:88314771-88314790 MsG0180005196.01.T01:intron 25.0%
!! TTTATGTATTCACTTGGTTT+TGG + Chr1:88311997-88312016 MsG0180005196.01.T01:intron 25.0%
!!! AAGAGCATTTAATTCTATGA+TGG - Chr1:88316194-88316213 None:intergenic 25.0%
!!! AATAATGGATTGTCTTCTAA+AGG - Chr1:88316658-88316677 None:intergenic 25.0%
!!! ATGGAAGTATTGTAATTTTC+AGG + Chr1:88312261-88312280 MsG0180005196.01.T01:intron 25.0%
!!! CTTTTCATTAGATTGATTCA+TGG + Chr1:88312561-88312580 MsG0180005196.01.T01:intron 25.0%
!!! TGTAGGATAGAGTTTAATTT+TGG + Chr1:88316816-88316835 MsG0180005196.01.T01:intron 25.0%
!!! TTCTGATCCATCTTTATTTT+TGG + Chr1:88315940-88315959 MsG0180005196.01.T01:CDS 25.0%
AAAAAGTTACAAGAACTTGC+CGG + Chr1:88315685-88315704 MsG0180005196.01.T01:CDS 30.0%
AAAGTCACATAATTCTTAGC+TGG - Chr1:88312767-88312786 None:intergenic 30.0%
AAATCAAAGGGATAAGCTTA+AGG + Chr1:88312494-88312513 MsG0180005196.01.T01:CDS 30.0%
AACAAAAGTAGGAAACTACT+CGG + Chr1:88315375-88315394 MsG0180005196.01.T01:CDS 30.0%
AAGTCTTCCAAATCACTTTA+TGG + Chr1:88313534-88313553 MsG0180005196.01.T01:intron 30.0%
ACATAATTCTTAGCTGGATT+TGG - Chr1:88312761-88312780 None:intergenic 30.0%
ACTACTGCATGTTAAAATGA+AGG + Chr1:88313895-88313914 MsG0180005196.01.T01:intron 30.0%
AGGGTAAGTTGTTACTAATT+TGG + Chr1:88313336-88313355 MsG0180005196.01.T01:intron 30.0%
AGTTCATAAAAAGGGTTACA+TGG + Chr1:88315820-88315839 MsG0180005196.01.T01:intron 30.0%
ATCACGAATTCAAGAAGTTT+AGG - Chr1:88312975-88312994 None:intergenic 30.0%
ATCTCATCAAATATGTGTAG+GGG + Chr1:88314166-88314185 MsG0180005196.01.T01:intron 30.0%
ATTCAGAAATATGCAGCAAA+AGG + Chr1:88316455-88316474 MsG0180005196.01.T01:intron 30.0%
ATTGACAGTCCAATACTTAA+AGG - Chr1:88316558-88316577 None:intergenic 30.0%
CAAATCCTTGTACTCATTTA+AGG - Chr1:88312692-88312711 None:intergenic 30.0%
CTTTGTAACAGTAAATCTCT+TGG - Chr1:88314199-88314218 None:intergenic 30.0%
GACTAAATAATAACCCTAGA+TGG - Chr1:88312034-88312053 None:intergenic 30.0%
GAGTTGTATAGAACAAAAGT+AGG + Chr1:88315364-88315383 MsG0180005196.01.T01:CDS 30.0%
GTTCTATACATTTAGTTGCA+CGG - Chr1:88315229-88315248 None:intergenic 30.0%
TCTTGGATATCTGAACAATT+TGG + Chr1:88317320-88317339 MsG0180005196.01.T01:CDS 30.0%
TGAGAATAAGAGCAAAATTG+AGG + Chr1:88315477-88315496 MsG0180005196.01.T01:CDS 30.0%
TGCATTATTCATTCAGCATT+GGG + Chr1:88313415-88313434 MsG0180005196.01.T01:intron 30.0%
TGCTCCCAACTATAAATATA+TGG - Chr1:88312595-88312614 None:intergenic 30.0%
TGTTACTGTTACTGTAAAGA+AGG + Chr1:88315432-88315451 MsG0180005196.01.T01:CDS 30.0%
TTCTATACATTTAGTTGCAC+GGG - Chr1:88315228-88315247 None:intergenic 30.0%
TTCTGTAGAAAGTCAAAAAC+AGG - Chr1:88313732-88313751 None:intergenic 30.0%
TTCTTTACAGTAACAGTAAC+AGG - Chr1:88315433-88315452 None:intergenic 30.0%
! AAGTGTTGTTGAAACAGATA+TGG + Chr1:88313049-88313068 MsG0180005196.01.T01:intron 30.0%
! AATATTCGTGTTACTGACAA+TGG + Chr1:88312313-88312332 MsG0180005196.01.T01:CDS 30.0%
! AGAAATGGCATTTTTGATAC+AGG + Chr1:88317347-88317366 MsG0180005196.01.T01:CDS 30.0%
! AGACTTTTCTTAGAACAGAT+AGG - Chr1:88315104-88315123 None:intergenic 30.0%
! GCTGATACCATATATTTCTA+AGG + Chr1:88316726-88316745 MsG0180005196.01.T01:CDS 30.0%
! TATTAATTTTGCACGCAGAT+GGG + Chr1:88313973-88313992 MsG0180005196.01.T01:intron 30.0%
! TCATCACTTAACTTTTCCTT+TGG + Chr1:88314302-88314321 MsG0180005196.01.T01:intron 30.0%
! TTACTATTGACTGGAAGTTA+TGG + Chr1:88315007-88315026 MsG0180005196.01.T01:CDS 30.0%
! TTAGATATTTGGAACACAAG+GGG + Chr1:88314772-88314791 MsG0180005196.01.T01:intron 30.0%
! TTATTAATTTTGCACGCAGA+TGG + Chr1:88313972-88313991 MsG0180005196.01.T01:intron 30.0%
!! ATACTTTGGGATGTAATTTG+AGG + Chr1:88315737-88315756 MsG0180005196.01.T01:intron 30.0%
!! ATGTGACTTTTTCCAAGAAA+AGG + Chr1:88312777-88312796 MsG0180005196.01.T01:CDS 30.0%
!! TAATGAGTTGTTTTCGTACT+GGG + Chr1:88313359-88313378 MsG0180005196.01.T01:intron 30.0%
!! TTGATCGTCGTATTTTAAAG+TGG + Chr1:88312945-88312964 MsG0180005196.01.T01:intron 30.0%
!!! AAGATTTTTGGCTGTCAAAA+TGG + Chr1:88313172-88313191 MsG0180005196.01.T01:CDS 30.0%
!!! ATAACATTTTTTGCTGCAGA+TGG + Chr1:88313809-88313828 MsG0180005196.01.T01:intron 30.0%
AAATACCTGAACTATGGAAC+CGG - Chr1:88316333-88316352 None:intergenic 35.0%
ACAGCCAAAAATCTTCCATT+GGG - Chr1:88313167-88313186 None:intergenic 35.0%
AGGTAAGTGTTCATTCGATT+AGG - Chr1:88314822-88314841 None:intergenic 35.0%
ATAGAGTGCAATGCTATACA+TGG - Chr1:88316620-88316639 None:intergenic 35.0%
ATCTTTACACGTGTATCTGA+TGG + Chr1:88316945-88316964 MsG0180005196.01.T01:intron 35.0%
ATTTACCTCCATTTGTGAAG+TGG - Chr1:88311826-88311845 None:intergenic 35.0%
CAAAATTGAGGAACTAGTTG+AGG + Chr1:88315489-88315508 MsG0180005196.01.T01:CDS 35.0%
CAAGTAACCTAGATGCATAT+AGG + Chr1:88314593-88314612 MsG0180005196.01.T01:intron 35.0%
CCTCGAACCAAAAATAAAGA+TGG - Chr1:88315950-88315969 None:intergenic 35.0%
CTAAGAGAAGCAAATCACAA+GGG - Chr1:88316979-88316998 None:intergenic 35.0%
CTAGAAATACGTTACATTCG+TGG + Chr1:88317056-88317075 MsG0180005196.01.T01:CDS 35.0%
CTATATGCATCTAGGTTACT+TGG - Chr1:88314595-88314614 None:intergenic 35.0%
CTCTACCTTAAATGAGTACA+AGG + Chr1:88312684-88312703 MsG0180005196.01.T01:intron 35.0%
GACATATGCTTACTATTGAC+TGG + Chr1:88314998-88315017 MsG0180005196.01.T01:CDS 35.0%
GATCAAGAGACATAAGAGTA+TGG - Chr1:88313499-88313518 None:intergenic 35.0%
GATGAAAAGGAGAAAATGGA+AGG - Chr1:88312849-88312868 None:intergenic 35.0%
GCATTATTCATTCAGCATTG+GGG + Chr1:88313416-88313435 MsG0180005196.01.T01:intron 35.0%
GGAACCTATTACAATGACAA+AGG + Chr1:88315396-88315415 MsG0180005196.01.T01:CDS 35.0%
GTGCAAGGTAAAGTACAATT+TGG - Chr1:88315911-88315930 None:intergenic 35.0%
GTGCATTATTCATTCAGCAT+TGG + Chr1:88313414-88313433 MsG0180005196.01.T01:intron 35.0%
GTGTTCATTCGATTAGGATA+TGG - Chr1:88314816-88314835 None:intergenic 35.0%
GTTCAAAGAAGCCAAATGTT+CGG + Chr1:88313302-88313321 MsG0180005196.01.T01:CDS 35.0%
GTTGTTGAAACAGATATGGA+GGG + Chr1:88313053-88313072 MsG0180005196.01.T01:intron 35.0%
TAGAGTGCAATGCTATACAT+GGG - Chr1:88316619-88316638 None:intergenic 35.0%
TCAACAAAGCTGTGCAATAA+TGG - Chr1:88316673-88316692 None:intergenic 35.0%
TCATAGTGATCATGTTCTGT+TGG - Chr1:88315604-88315623 None:intergenic 35.0%
TCATTCGATTAGGATATGGA+GGG - Chr1:88314812-88314831 None:intergenic 35.0%
TCTAATCCTTAAAGCAACAG+TGG + Chr1:88317117-88317136 MsG0180005196.01.T01:intron 35.0%
TCTATACATTTAGTTGCACG+GGG - Chr1:88315227-88315246 None:intergenic 35.0%
TCTATATTTACCGTAACGCT+TGG + Chr1:88314921-88314940 MsG0180005196.01.T01:intron 35.0%
TCTATCATTGCACTTCTCAT+TGG - Chr1:88312289-88312308 None:intergenic 35.0%
TGGATATCTGAACAATTTGG+TGG + Chr1:88317323-88317342 MsG0180005196.01.T01:CDS 35.0%
TGTTCAGATATCCAAGAACT+AGG - Chr1:88317317-88317336 None:intergenic 35.0%
TGTTGTTGAAACAGATATGG+AGG + Chr1:88313052-88313071 MsG0180005196.01.T01:intron 35.0%
TTCATTCGATTAGGATATGG+AGG - Chr1:88314813-88314832 None:intergenic 35.0%
TTTACCTCCATTTGTGAAGT+GGG - Chr1:88311825-88311844 None:intergenic 35.0%
! AAAGTGGATACGTTCTTTTC+AGG + Chr1:88312635-88312654 MsG0180005196.01.T01:CDS 35.0%
! AGTGATTTGGAAGACTTACT+CGG - Chr1:88313531-88313550 None:intergenic 35.0%
! AGTTGATTGATTTCTTGTGC+AGG + Chr1:88313270-88313289 MsG0180005196.01.T01:intron 35.0%
! ATTTTCATGAATCAGATGCC+AGG + Chr1:88316589-88316608 MsG0180005196.01.T01:intron 35.0%
! GAACAATTTGGTGGTAGAAA+TGG + Chr1:88317332-88317351 MsG0180005196.01.T01:CDS 35.0%
! TATTAGCTTGACATCGATGT+TGG + Chr1:88317261-88317280 MsG0180005196.01.T01:intron 35.0%
! TGTTGGAAAGAAAGCATGTT+TGG + Chr1:88317022-88317041 MsG0180005196.01.T01:CDS 35.0%
! TTTTTCACAAAACTACCAGC+TGG - Chr1:88315670-88315689 None:intergenic 35.0%
!! AACGTGTCGACTAAATCATA+TGG + Chr1:88317515-88317534 MsG0180005196.01.T01:CDS 35.0%
!! CTTGTGATTTGCTTCTCTTA+GGG + Chr1:88316978-88316997 MsG0180005196.01.T01:intron 35.0%
!! GTAATGAGTTGTTTTCGTAC+TGG + Chr1:88313358-88313377 MsG0180005196.01.T01:intron 35.0%
!! TAATCCACTTTAGAGTGGAA+AGG - Chr1:88316150-88316169 None:intergenic 35.0%
!! TCAAGCCTTATTGAACTAAG+TGG - Chr1:88312929-88312948 None:intergenic 35.0%
!! TGTAACGTATTTCTAGTGCT+TGG - Chr1:88317052-88317071 None:intergenic 35.0%
!! TTATTGCACAGCTTTGTTGA+AGG + Chr1:88316673-88316692 MsG0180005196.01.T01:CDS 35.0%
!!! CATTACTTTTAAGGCAAGCT+CGG - Chr1:88314398-88314417 None:intergenic 35.0%
!!! CCATCTTTATTTTTGGTTCG+AGG + Chr1:88315947-88315966 MsG0180005196.01.T01:CDS 35.0%
AAGACTTACTCGGATCTTGA+GGG - Chr1:88313521-88313540 None:intergenic 40.0%
AATACCTGAACTATGGAACC+GGG - Chr1:88316332-88316351 None:intergenic 40.0%
AATTCGTTCGAGCATACGAA+TGG - Chr1:88315070-88315089 None:intergenic 40.0%
ACAAAGATACTGGAGAAGAG+AGG + Chr1:88314213-88314232 MsG0180005196.01.T01:CDS 40.0%
ACACCAGATACTATAGGACA+TGG + Chr1:88313675-88313694 MsG0180005196.01.T01:intron 40.0%
ACCAATCATTGTACAACTGG+AGG - Chr1:88314060-88314079 None:intergenic 40.0%
ACCTCCAGTTGTACAATGAT+TGG + Chr1:88314056-88314075 MsG0180005196.01.T01:CDS 40.0%
ACTACACCAAAACAATGTGC+AGG + Chr1:88317455-88317474 MsG0180005196.01.T01:intron 40.0%
AGACCATGTCCTATAGTATC+TGG - Chr1:88313681-88313700 None:intergenic 40.0%
AGGATTCACTCCAATTGCTT+TGG - Chr1:88317547-88317566 None:intergenic 40.0%
AGGTCATACTCACTTGTATG+TGG - Chr1:88316505-88316524 None:intergenic 40.0%
AGTTGAGGTGAAAGATCAAG+TGG + Chr1:88315504-88315523 MsG0180005196.01.T01:CDS 40.0%
ATCGTGGTTGATCACATAGA+TGG + Chr1:88314016-88314035 MsG0180005196.01.T01:CDS 40.0%
ATGCATCTAGGTTACTTGGA+AGG - Chr1:88314591-88314610 None:intergenic 40.0%
ATGGATGCATCCAAAGCAAT+TGG + Chr1:88317534-88317553 MsG0180005196.01.T01:CDS 40.0%
ATGTCCTATAGTATCTGGTG+TGG - Chr1:88313676-88313695 None:intergenic 40.0%
ATGTTATTGCACCTTCCCAA+TGG + Chr1:88313149-88313168 MsG0180005196.01.T01:CDS 40.0%
ATTGTACTTTACCTTGCACC+TGG + Chr1:88315912-88315931 MsG0180005196.01.T01:CDS 40.0%
CACTTATCTTTAACGGCACT+CGG + Chr1:88315153-88315172 MsG0180005196.01.T01:intron 40.0%
CAGAAATATGCAGCAAAAGG+TGG + Chr1:88316458-88316477 MsG0180005196.01.T01:intron 40.0%
CATCTTCTCGTGTGTTACAT+CGG - Chr1:88316295-88316314 None:intergenic 40.0%
CCAAAAATCTTCCATTGGGA+AGG - Chr1:88313163-88313182 None:intergenic 40.0%
CCTAAGAGAAGCAAATCACA+AGG - Chr1:88316980-88316999 None:intergenic 40.0%
CTACACCAAAACAATGTGCA+GGG + Chr1:88317456-88317475 MsG0180005196.01.T01:intron 40.0%
GACACCTTGATGCAATTAGT+AGG + Chr1:88316257-88316276 MsG0180005196.01.T01:CDS 40.0%
GACAGCCAAAAATCTTCCAT+TGG - Chr1:88313168-88313187 None:intergenic 40.0%
GACAGCCACTTAGTTCAATA+AGG + Chr1:88312921-88312940 MsG0180005196.01.T01:intron 40.0%
GACGCACAAATAAAAGCTAG+TGG + Chr1:88313227-88313246 MsG0180005196.01.T01:intron 40.0%
GACTGAGTTCCTTTGTTAAC+AGG - Chr1:88314970-88314989 None:intergenic 40.0%
GATACCACACCAGATACTAT+AGG + Chr1:88313669-88313688 MsG0180005196.01.T01:intron 40.0%
GCAACCAATCATTGTACAAC+TGG - Chr1:88314063-88314082 None:intergenic 40.0%
GCATATAGGCGCAAGAAATT+TGG + Chr1:88314607-88314626 MsG0180005196.01.T01:intron 40.0%
GTGGATGACAAAGAAATTCC+CGG + Chr1:88315523-88315542 MsG0180005196.01.T01:CDS 40.0%
TAGGCGCAAGAAATTTGGTT+TGG + Chr1:88314612-88314631 MsG0180005196.01.T01:intron 40.0%
TGATTTCTTGTGCAGGACTA+AGG + Chr1:88313277-88313296 MsG0180005196.01.T01:intron 40.0%
TGCAATTAGTAGGTGCAGAT+TGG + Chr1:88316267-88316286 MsG0180005196.01.T01:CDS 40.0%
TGCACCTACTAATTGCATCA+AGG - Chr1:88316264-88316283 None:intergenic 40.0%
TGGATAGTCAAGCAAAGTGT+TGG + Chr1:88317005-88317024 MsG0180005196.01.T01:CDS 40.0%
TTCGAGCATACGAATGGTTA+TGG - Chr1:88315064-88315083 None:intergenic 40.0%
TTGGAAGGAGTAGTGAGAAA+AGG - Chr1:88314576-88314595 None:intergenic 40.0%
TTGTACTTTACCTTGCACCT+GGG + Chr1:88315913-88315932 MsG0180005196.01.T01:CDS 40.0%
TTTGCTTCTCTTAGGGATCA+TGG + Chr1:88316985-88317004 MsG0180005196.01.T01:intron 40.0%
! ACTGTTTGTTGCAGAACCAA+AGG - Chr1:88314321-88314340 None:intergenic 40.0%
! CAAACTTGAACGCCTTTTCT+TGG - Chr1:88312792-88312811 None:intergenic 40.0%
! CCTTCCCAATGGAAGATTTT+TGG + Chr1:88313160-88313179 MsG0180005196.01.T01:CDS 40.0%
! CTTTCCTTTCCACTCTAAAG+TGG + Chr1:88316143-88316162 MsG0180005196.01.T01:intron 40.0%
! GAAAGTGCATCATGCTCTTA+TGG + Chr1:88315866-88315885 MsG0180005196.01.T01:CDS 40.0%
! GGAAAGAAAGCATGTTTGGT+TGG + Chr1:88317026-88317045 MsG0180005196.01.T01:CDS 40.0%
! GGCAATGATTTTGCCATCTA+GGG + Chr1:88312018-88312037 MsG0180005196.01.T01:intron 40.0%
! TCGTGTTACTGACAATGGAA+GGG + Chr1:88312318-88312337 MsG0180005196.01.T01:CDS 40.0%
! TGGCAATGATTTTGCCATCT+AGG + Chr1:88312017-88312036 MsG0180005196.01.T01:intron 40.0%
! TGGGACTTTTGTATACATCG+AGG + Chr1:88313992-88314011 MsG0180005196.01.T01:CDS 40.0%
! TGGGATGTAATTTGAGGCTA+AGG + Chr1:88315743-88315762 MsG0180005196.01.T01:intron 40.0%
! TGTACAATGATTGGTTGCCA+TGG + Chr1:88314065-88314084 MsG0180005196.01.T01:CDS 40.0%
! TGTTACCCTGCACATTGTTT+TGG - Chr1:88317464-88317483 None:intergenic 40.0%
! TTCGTGTTACTGACAATGGA+AGG + Chr1:88312317-88312336 MsG0180005196.01.T01:CDS 40.0%
!! AAAGTGGATTACTCGCTTCA+GGG + Chr1:88316159-88316178 MsG0180005196.01.T01:intron 40.0%
!! AGAAAAGGCGTTCAAGTTTG+AGG + Chr1:88312792-88312811 MsG0180005196.01.T01:CDS 40.0%
!! CCTTGTGATTTGCTTCTCTT+AGG + Chr1:88316977-88316996 MsG0180005196.01.T01:intron 40.0%
!! TAAAGTGGATTACTCGCTTC+AGG + Chr1:88316158-88316177 MsG0180005196.01.T01:intron 40.0%
!! TGATCATGTTCTGTTGGTTC+AGG - Chr1:88315598-88315617 None:intergenic 40.0%
!!! TTTTTTGCTGCAGATGGTTC+TGG + Chr1:88313815-88313834 MsG0180005196.01.T01:intron 40.0%
AATGTTCGGATTCACGTGGA+AGG + Chr1:88313316-88313335 MsG0180005196.01.T01:CDS 45.0%
ACAAAACTACCAGCTGGTGA+TGG - Chr1:88315664-88315683 None:intergenic 45.0%
AGCATTTGCATCACGTGCAT+CGG - Chr1:88313577-88313596 None:intergenic 45.0%
ATGCTATACATGGGACTTCC+TGG - Chr1:88316610-88316629 None:intergenic 45.0%
ATGTTCGGATTCACGTGGAA+GGG + Chr1:88313317-88313336 MsG0180005196.01.T01:CDS 45.0%
CAAACCCACTTCACAAATGG+AGG + Chr1:88311818-88311837 MsG0180005196.01.T01:CDS 45.0%
CAATCGGCAATAATGGCAGT+TGG + Chr1:88313443-88313462 MsG0180005196.01.T01:CDS 45.0%
CATCGATGTTGGATCTTCGA+CGG + Chr1:88317272-88317291 MsG0180005196.01.T01:CDS 45.0%
CGATTAGGATATGGAGGGTA+GGG - Chr1:88314807-88314826 None:intergenic 45.0%
CGTCCTATAAGAGTCTAGCT+TGG - Chr1:88313211-88313230 None:intergenic 45.0%
GAAGACTTACTCGGATCTTG+AGG - Chr1:88313522-88313541 None:intergenic 45.0%
GACCAAACCCACTTCACAAA+TGG + Chr1:88311815-88311834 MsG0180005196.01.T01:CDS 45.0%
GATGATTTGAGTAGTCGTCC+CGG + Chr1:88316311-88316330 MsG0180005196.01.T01:CDS 45.0%
GCTCCAAGCTAGACTCTTAT+AGG + Chr1:88313205-88313224 MsG0180005196.01.T01:intron 45.0%
GTGGTGACTCCTGTTAACAA+AGG + Chr1:88314958-88314977 MsG0180005196.01.T01:CDS 45.0%
GTTCAGAAGAAGCTGCAAAG+TGG + Chr1:88312619-88312638 MsG0180005196.01.T01:CDS 45.0%
TACTGGAGAAGAGAGGATGA+TGG + Chr1:88314220-88314239 MsG0180005196.01.T01:CDS 45.0%
TATTTACCGTAACGCTTGGC+AGG + Chr1:88314925-88314944 MsG0180005196.01.T01:intron 45.0%
TCCACGTGAATCCGAACATT+TGG - Chr1:88313316-88313335 None:intergenic 45.0%
TCCCATTAAACTGATGCGAC+CGG - Chr1:88315545-88315564 None:intergenic 45.0%
TCGATTAGGATATGGAGGGT+AGG - Chr1:88314808-88314827 None:intergenic 45.0%
TCGTGGCAAGAACTATCTAG+AGG + Chr1:88317073-88317092 MsG0180005196.01.T01:CDS 45.0%
TCTTGCGCCTATATGCATCT+AGG - Chr1:88314603-88314622 None:intergenic 45.0%
! AGAGAGGATGATGGCACATA+CGG + Chr1:88314229-88314248 MsG0180005196.01.T01:CDS 45.0%
! CTCCATTTGTGAAGTGGGTT+TGG - Chr1:88311820-88311839 None:intergenic 45.0%
! GAGGGTCAAAAAGCACAGAT+TGG + Chr1:88313071-88313090 MsG0180005196.01.T01:CDS 45.0%
! GCGAGTAATCCACTTTAGAG+TGG - Chr1:88316155-88316174 None:intergenic 45.0%
! GGAAGGTGCAATAACATCAG+AGG - Chr1:88313146-88313165 None:intergenic 45.0%
! TGTCGTTGATGGAACTTCAG+AGG + Chr1:88313466-88313485 MsG0180005196.01.T01:CDS 45.0%
!! GCAGAACCACTGTTGCTTTA+AGG - Chr1:88317126-88317145 None:intergenic 45.0%
!! TGGATTAGTACGACGTACCA+TGG - Chr1:88314085-88314104 None:intergenic 45.0%
!! TTGTATACATCGAGGCATCG+TGG + Chr1:88314000-88314019 MsG0180005196.01.T01:CDS 45.0%
!! TTTTCAGGAAGCTGCAGTGA+AGG + Chr1:88312650-88312669 MsG0180005196.01.T01:CDS 45.0%
ACGTTCCGATGAGGACTTCA+GGG - Chr1:88317500-88317519 None:intergenic 50.0%
ACTAGGCAAGCGACATGCAT+TGG + Chr1:88312142-88312161 MsG0180005196.01.T01:intron 50.0%
AGCTCGGACGTAACCTTTCT+TGG - Chr1:88314382-88314401 None:intergenic 50.0%
CCCATTAAACTGATGCGACC+GGG - Chr1:88315544-88315563 None:intergenic 50.0%
CCCGGTCGCATCAGTTTAAT+GGG + Chr1:88315541-88315560 MsG0180005196.01.T01:CDS 50.0%
CGTATGCTCGAACGAATTGC+AGG + Chr1:88315072-88315091 MsG0180005196.01.T01:CDS 50.0%
GAACACAAACCATCACCAGC+TGG + Chr1:88315652-88315671 MsG0180005196.01.T01:CDS 50.0%
GCCAAATGTTCGGATTCACG+TGG + Chr1:88313312-88313331 MsG0180005196.01.T01:CDS 50.0%
GCTCGGACGTAACCTTTCTT+GGG - Chr1:88314381-88314400 None:intergenic 50.0%
GGACGTAACCTTTCTTGGGT+GGG - Chr1:88314377-88314396 None:intergenic 50.0%
GGGTGAGCAATCGGCAATAA+TGG + Chr1:88313436-88313455 MsG0180005196.01.T01:CDS 50.0%
TCCCGGTCGCATCAGTTTAA+TGG + Chr1:88315540-88315559 MsG0180005196.01.T01:CDS 50.0%
TTAGTCGACACGTTCCGATG+AGG - Chr1:88317509-88317528 None:intergenic 50.0%
! TCAGCATTGGGGTGAGCAAT+CGG + Chr1:88313427-88313446 MsG0180005196.01.T01:intron 50.0%
!! ATGGCAGTTGGTGTCGTTGA+TGG + Chr1:88313455-88313474 MsG0180005196.01.T01:CDS 50.0%
ACCTTTCTTGGGTGGGCACT+TGG - Chr1:88314370-88314389 None:intergenic 55.0%
AGATGGATCAGAAGGAGCCC+AGG - Chr1:88315933-88315952 None:intergenic 55.0%
CACGTTCCGATGAGGACTTC+AGG - Chr1:88317501-88317520 None:intergenic 55.0%
CGGACGTAACCTTTCTTGGG+TGG - Chr1:88314378-88314397 None:intergenic 55.0%
CTTGCACGAGGTAGCTAAGG+AGG + Chr1:88315844-88315863 MsG0180005196.01.T01:CDS 55.0%
CTTGGCAGGTGGAGGATTTG+TGG + Chr1:88314939-88314958 MsG0180005196.01.T01:intron 55.0%
GAGCTCCCTGAAGTCCTCAT+CGG + Chr1:88317492-88317511 MsG0180005196.01.T01:CDS 55.0%
GGACTTGCACGAGGTAGCTA+AGG + Chr1:88315841-88315860 MsG0180005196.01.T01:CDS 55.0%
GGATCTTCGACGGTTGCAAG+AGG + Chr1:88317282-88317301 MsG0180005196.01.T01:CDS 55.0%
GGGTTACATGGACTTGCACG+AGG + Chr1:88315832-88315851 MsG0180005196.01.T01:CDS 55.0%
TCCAAGTGCCCACCCAAGAA+AGG + Chr1:88314366-88314385 MsG0180005196.01.T01:intron 55.0%
TCGTCCCGGTTCCATAGTTC+AGG + Chr1:88316325-88316344 MsG0180005196.01.T01:CDS 55.0%
TTACCGTAACGCTTGGCAGG+TGG + Chr1:88314928-88314947 MsG0180005196.01.T01:intron 55.0%
TTCGACGGTTGCAAGAGGAG+TGG + Chr1:88317287-88317306 MsG0180005196.01.T01:CDS 55.0%
! GGAGTGGCAAGCCTAGTTCT+TGG + Chr1:88317303-88317322 MsG0180005196.01.T01:CDS 55.0%
CCTCCACCTGCCAAGCGTTA+CGG - Chr1:88314934-88314953 None:intergenic 60.0%
TCAGAAGGAGCCCAGGTGCA+AGG - Chr1:88315926-88315945 None:intergenic 60.0%
!! CGGCACTCGGTGTTAACACG+TGG + Chr1:88315166-88315185 MsG0180005196.01.T01:intron 60.0%
CCGTAACGCTTGGCAGGTGG+AGG + Chr1:88314931-88314950 MsG0180005196.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88311714 88317569 88311714 ID=MsG0180005196.01;Name=MsG0180005196.01
Chr1 mRNA 88311714 88317569 88311714 ID=MsG0180005196.01.T01;Parent=MsG0180005196.01;Name=MsG0180005196.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|1|1|19|0|709
Chr1 exon 88311714 88311839 88311714 ID=MsG0180005196.01.T01:exon:37138;Parent=MsG0180005196.01.T01
Chr1 exon 88312283 88312357 88312283 ID=MsG0180005196.01.T01:exon:37139;Parent=MsG0180005196.01.T01
Chr1 exon 88312462 88312515 88312462 ID=MsG0180005196.01.T01:exon:37140;Parent=MsG0180005196.01.T01
Chr1 exon 88312606 88312671 88312606 ID=MsG0180005196.01.T01:exon:37141;Parent=MsG0180005196.01.T01
Chr1 exon 88312752 88312813 88312752 ID=MsG0180005196.01.T01:exon:37142;Parent=MsG0180005196.01.T01
Chr1 exon 88313066 88313193 88313066 ID=MsG0180005196.01.T01:exon:37143;Parent=MsG0180005196.01.T01
Chr1 exon 88313292 88313338 88313292 ID=MsG0180005196.01.T01:exon:37144;Parent=MsG0180005196.01.T01
Chr1 exon 88313431 88313531 88313431 ID=MsG0180005196.01.T01:exon:37145;Parent=MsG0180005196.01.T01
Chr1 exon 88313991 88314086 88313991 ID=MsG0180005196.01.T01:exon:37146;Parent=MsG0180005196.01.T01
Chr1 exon 88314186 88314250 88314186 ID=MsG0180005196.01.T01:exon:37147;Parent=MsG0180005196.01.T01
Chr1 exon 88314947 88315093 88314947 ID=MsG0180005196.01.T01:exon:37148;Parent=MsG0180005196.01.T01
Chr1 exon 88315356 88315706 88315356 ID=MsG0180005196.01.T01:exon:37149;Parent=MsG0180005196.01.T01
Chr1 exon 88315822 88315997 88315822 ID=MsG0180005196.01.T01:exon:37150;Parent=MsG0180005196.01.T01
Chr1 exon 88316245 88316346 88316245 ID=MsG0180005196.01.T01:exon:37151;Parent=MsG0180005196.01.T01
Chr1 exon 88316461 88316511 88316461 ID=MsG0180005196.01.T01:exon:37152;Parent=MsG0180005196.01.T01
Chr1 exon 88316604 88316795 88316604 ID=MsG0180005196.01.T01:exon:37153;Parent=MsG0180005196.01.T01
Chr1 exon 88316999 88317094 88316999 ID=MsG0180005196.01.T01:exon:37154;Parent=MsG0180005196.01.T01
Chr1 exon 88317267 88317368 88317267 ID=MsG0180005196.01.T01:exon:37155;Parent=MsG0180005196.01.T01
Chr1 exon 88317477 88317569 88317477 ID=MsG0180005196.01.T01:exon:37156;Parent=MsG0180005196.01.T01
Chr1 CDS 88311714 88311839 88311714 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88312283 88312357 88312283 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88312462 88312515 88312462 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88312606 88312671 88312606 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88312752 88312813 88312752 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88313066 88313193 88313066 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88313292 88313338 88313292 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88313431 88313531 88313431 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88313991 88314086 88313991 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88314186 88314250 88314186 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88314947 88315093 88314947 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88315356 88315706 88315356 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88315822 88315997 88315822 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88316245 88316346 88316245 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88316461 88316511 88316461 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88316604 88316795 88316604 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88316999 88317094 88316999 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88317267 88317368 88317267 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Chr1 CDS 88317477 88317569 88317477 ID=MsG0180005196.01.T01:cds;Parent=MsG0180005196.01.T01
Gene Sequence

>MsG0180005196.01.T01

ATGGAAGGGTGGCTTTATCTCATTCGTTCTAATCGGTTTACTCAACATTACTCACGTAAAAGATACTTCATTCTCAAAGAAAATGTTCTCAGAAATTTCAAGACCAAACCCACTTCACAAATGGAGGAGCCAATGAGAAGTGCAATGATAGACTCGAATATTCGTGTTACTGACAATGGAAGGGAGAGTATCAACAAAAAAGTATTATTTATTTTCACTGTATATAATACTTCAAATCAAAGGGATAAGCTTAAGTTGGGAGCACGTAGTTCAGAAGAAGCTGCAAAGTGGATACGTTCTTTTCAGGAAGCTGCAGTGAAGGAGTATCCAAATCCAGCTAAGAATTATGTGACTTTTTCCAAGAAAAGGCGTTCAAGTTTGAGATATGGAGGGTCAAAAAGCACAGATTGGAAATACTCTAAATTGAGTTTTGAATCATCTGTATACTCTGAAGCTATGACCTCTGATGTTATTGCACCTTCCCAATGGAAGATTTTTGGCTGTCAAAATGGACTAAGGATGTTCAAAGAAGCCAAATGTTCGGATTCACGTGGAAGGCATTGGGGTGAGCAATCGGCAATAATGGCAGTTGGTGTCGTTGATGGAACTTCAGAGGCTATTTTCCATACTCTTATGTCTCTTGATCCCTCAAGATCCGAATGGGACTTTTGTATACATCGAGGCATCGTGGTTGATCACATAGATGGTCATACAGACATCATTCACCTCCAGTTGTACAATGATTGGTTGCCATGGGGTATGAAACCAAGAGATTTACTGTTACAAAGATACTGGAGAAGAGAGGATGATGGCACATACGGTGGAGGATTTGTGGTGACTCCTGTTAACAAAGGAACTCAGTCAGTTGTGAGACATATGCTTACTATTGACTGGAAGTTATGGAAACTATATTTGGGAGCTTCATCTACTAGATCCATAACCATTCGTATGCTCGAACGAATTGCAGCACTAAGAGAGTTGTATAGAACAAAAGTAGGAAACTACTCGGAACCTATTACAATGACAAAGGATATTGTATTGCCTGTTACTGTTACTGTAAAGAAGGATGTTAAGATTGAAGTTGCAAATGAGAATAAGAGCAAAATTGAGGAACTAGTTGAGGTGAAAGATCAAGTGGATGACAAAGAAATTCCCGGTCGCATCAGTTTAATGGGATTGACTGATTCTGATGAGTTCTTTGATGTTCCTGAACCAACAGAACATGATCACTATGATAATCAATGGCACTCTGACTTTCATTCAGAACACAAACCATCACCAGCTGGTAGTTTTGTGAAAAAGTTACAAGAACTTGCCGTTCATAAAAAGGGTTACATGGACTTGCACGAGGTAGCTAAGGAGGAAAGTGCATCATGCTCTTATGGAAACACTCTTCAAAAAGATCCAAATTGTACTTTACCTTGCACCTGGGCTCCTTCTGATCCATCTTTATTTTTGGTTCGAGGAGAAACTTATTTACAAGACCATCAAAAGGTCAAGGCAAACGACACCTTGATGCAATTAGTAGGTGCAGATTGGCTCCGATGTAACACACGAGAAGATGATTTGAGTAGTCGTCCCGGTTCCATAGTTCAGAAATATGCAGCAAAAGGTGGTCCAGAATTCTTTTTTGTTATCCACATACAAATGCCAGGAAGTCCCATGTATAGCATTGCACTCTATTACATGATGAAAACTCCTTTAGAAGACAATCCATTATTGCACAGCTTTGTTGAAGGAGATGATACTTATAGAAACTCAAGATTTAAGCTGATACCATATATTTCTAAGGTTAACAACATTTTAAGATTTCAGCTGCATTTCTTAAGTTCATTACAAGGATCATGGATAGTCAAGCAAAGTGTTGGAAAGAAAGCATGTTTGGTTGGCCAAGCACTAGAAATACGTTACATTCGTGGCAAGAACTATCTAGAGCTTGACATCGATGTTGGATCTTCGACGGTTGCAAGAGGAGTGGCAAGCCTAGTTCTTGGATATCTGAACAATTTGGTGGTAGAAATGGCATTTTTGATACAGGGTAACACACAAGATGAGCTCCCTGAAGTCCTCATCGGAACGTGTCGACTAAATCATATGGATGCATCCAAAGCAATTGGAGTGAATCCTTAA
Protein sequence

>MsG0180005196.01.T01

MEGWLYLIRSNRFTQHYSRKRYFILKENVLRNFKTKPTSQMEEPMRSAMIDSNIRVTDNGRESINKKVLFIFTVYNTSNQRDKLKLGARSSEEAAKWIRSFQEAAVKEYPNPAKNYVTFSKKRRSSLRYGGSKSTDWKYSKLSFESSVYSEAMTSDVIAPSQWKIFGCQNGLRMFKEAKCSDSRGRHWGEQSAIMAVGVVDGTSEAIFHTLMSLDPSRSEWDFCIHRGIVVDHIDGHTDIIHLQLYNDWLPWGMKPRDLLLQRYWRREDDGTYGGGFVVTPVNKGTQSVVRHMLTIDWKLWKLYLGASSTRSITIRMLERIAALRELYRTKVGNYSEPITMTKDIVLPVTVTVKKDVKIEVANENKSKIEELVEVKDQVDDKEIPGRISLMGLTDSDEFFDVPEPTEHDHYDNQWHSDFHSEHKPSPAGSFVKKLQELAVHKKGYMDLHEVAKEESASCSYGNTLQKDPNCTLPCTWAPSDPSLFLVRGETYLQDHQKVKANDTLMQLVGADWLRCNTREDDLSSRPGSIVQKYAAKGGPEFFFVIHIQMPGSPMYSIALYYMMKTPLEDNPLLHSFVEGDDTYRNSRFKLIPYISKVNNILRFQLHFLSSLQGSWIVKQSVGKKACLVGQALEIRYIRGKNYLELDIDVGSSTVARGVASLVLGYLNNLVVEMAFLIQGNTQDELPEVLIGTCRLNHMDASKAIGVNP*