AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005375.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005375.01.T01 MTR_1g098390 98.847 347 4 0 14 360 76 422 0.0 720
MsG0180005375.01.T01 MTR_6g038020 80.692 347 61 4 15 357 75 419 0.0 583
MsG0180005375.01.T01 MTR_6g038020 80.692 347 61 4 15 357 78 422 0.0 582
MsG0180005375.01.T01 MTR_6g033315 52.174 345 151 7 1 342 81 414 1.36e-117 348
MsG0180005375.01.T01 MTR_7g083480 53.009 349 138 8 1 342 81 410 6.14e-107 320
MsG0180005375.01.T01 MTR_3g098840 47.432 331 145 5 15 341 92 397 2.69e-103 311
MsG0180005375.01.T01 MTR_7g088350 52.874 261 107 4 16 272 101 349 5.98e-92 283
MsG0180005375.01.T01 MTR_7g088360 57.895 228 87 3 16 239 100 322 1.33e-89 275
MsG0180005375.01.T01 MTR_4g023760 28.936 235 138 9 26 255 85 295 9.45e-21 91.7
MsG0180005375.01.T01 MTR_4g021795 37.500 128 73 3 73 198 105 227 1.14e-19 88.6
MsG0180005375.01.T01 MTR_7g114080 35.211 142 74 3 74 201 160 297 4.11e-19 88.2
MsG0180005375.01.T01 MTR_7g114080 33.113 151 74 3 74 201 160 306 9.33e-18 84.3
MsG0180005375.01.T01 MTR_1g094610 32.961 179 81 5 26 198 69 214 2.02e-17 81.6
MsG0180005375.01.T01 MTR_5g023230 33.750 160 91 3 71 223 145 296 2.38e-17 82.4
MsG0180005375.01.T01 MTR_5g023230 33.750 160 91 3 71 223 165 316 2.81e-17 82.4
MsG0180005375.01.T01 MTR_4g116160 37.963 108 56 2 16 123 329 425 7.52e-17 82.4
MsG0180005375.01.T01 MTR_4g116160 37.963 108 56 2 16 123 156 252 1.23e-16 81.3
MsG0180005375.01.T01 MTR_4g116160 37.963 108 56 2 16 123 329 425 1.37e-16 81.3
MsG0180005375.01.T01 MTR_4g092760 36.752 117 61 3 12 128 314 417 6.73e-16 79.3
MsG0180005375.01.T01 MTR_7g114080 33.562 146 70 3 74 196 160 301 7.19e-16 77.8
MsG0180005375.01.T01 MTR_1g112830 30.189 212 109 7 16 216 422 605 1.05e-15 79.0
MsG0180005375.01.T01 MTR_4g092760 34.821 112 62 2 17 128 228 328 2.12e-15 77.4
MsG0180005375.01.T01 MTR_7g118050 30.932 236 114 11 26 241 83 289 3.52e-15 75.9
MsG0180005375.01.T01 MTR_7g114080 54.237 59 27 0 74 132 160 218 1.39e-14 74.3
MsG0180005375.01.T01 MTR_7g118050 35.294 102 40 2 26 117 83 168 6.83e-14 70.5
MsG0180005375.01.T01 MTR_1g085980 30.075 133 84 3 73 196 155 287 1.49e-12 68.9
MsG0180005375.01.T01 MTR_5g023230 41.935 62 36 0 71 132 165 226 2.40e-12 66.6
MsG0180005375.01.T01 MTR_4g082560 29.008 131 84 2 75 196 180 310 3.99e-11 64.7
MsG0180005375.01.T01 MTR_3g115950 27.481 131 86 2 75 196 75 205 4.38e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005375.01.T01 AT4G24630 63.429 350 104 8 15 359 76 406 2.32e-158 450
MsG0180005375.01.T01 AT5G50020 64.183 349 111 5 15 359 76 414 1.59e-157 448
MsG0180005375.01.T01 AT5G50020 64.183 349 111 5 15 359 106 444 3.38e-157 449
MsG0180005375.01.T01 AT5G50020 62.464 349 110 6 15 359 76 407 1.31e-149 428
MsG0180005375.01.T01 AT3G26935 52.994 334 141 7 16 342 91 415 1.01e-113 338
MsG0180005375.01.T01 AT5G41060 50.453 331 147 6 16 344 24 339 1.40e-105 314
MsG0180005375.01.T01 AT5G41060 50.453 331 147 6 16 344 24 339 1.40e-105 314
MsG0180005375.01.T01 AT5G41060 50.453 331 147 6 16 344 76 391 9.77e-105 313
MsG0180005375.01.T01 AT5G41060 50.453 331 147 6 16 344 91 406 1.63e-104 313
MsG0180005375.01.T01 AT3G48760 48.193 332 147 6 22 340 106 425 5.40e-101 306
MsG0180005375.01.T01 AT3G56930 58.772 228 89 2 16 239 84 310 1.27e-93 288
MsG0180005375.01.T01 AT5G05070 45.260 327 146 7 7 323 94 397 4.55e-85 264
MsG0180005375.01.T01 AT2G40990 50.385 260 119 4 16 272 99 351 1.11e-82 258
MsG0180005375.01.T01 AT3G56920 52.863 227 99 3 16 239 81 302 1.17e-76 239
MsG0180005375.01.T01 AT3G56930 50.000 228 73 2 16 239 84 274 1.48e-73 235
MsG0180005375.01.T01 AT3G04970 33.987 153 82 2 74 207 73 225 5.14e-19 87.0
MsG0180005375.01.T01 AT3G09320 31.429 175 93 5 25 196 66 216 7.47e-19 85.9
MsG0180005375.01.T01 AT3G04970 33.987 153 82 2 74 207 160 312 4.95e-18 85.1
MsG0180005375.01.T01 AT3G51390 35.294 187 104 4 68 247 156 332 3.27e-17 82.0
MsG0180005375.01.T01 AT3G51390 35.294 187 104 4 68 247 151 327 4.04e-17 81.6
MsG0180005375.01.T01 AT3G60800 29.949 197 126 5 26 221 85 270 7.17e-17 80.9
MsG0180005375.01.T01 AT5G04270 29.885 174 93 4 26 198 66 211 9.25e-17 79.7
MsG0180005375.01.T01 AT2G14255 31.373 153 95 4 74 216 363 515 1.24e-15 78.6
MsG0180005375.01.T01 AT3G04970 34.507 142 74 2 74 196 160 301 2.37e-15 76.3
MsG0180005375.01.T01 AT5G20350 27.888 251 131 11 16 243 324 547 4.99e-15 76.6
MsG0180005375.01.T01 AT1G69420 32.824 131 79 2 75 196 164 294 1.06e-14 75.9
MsG0180005375.01.T01 AT1G69420 32.824 131 79 2 75 196 164 294 1.06e-14 75.9
MsG0180005375.01.T01 AT4G00840 31.100 209 108 8 22 221 74 255 3.49e-14 72.8
MsG0180005375.01.T01 AT4G22750 30.675 163 88 6 73 224 115 263 1.25e-13 71.2
MsG0180005375.01.T01 AT4G00840 37.000 100 40 3 22 117 74 154 3.75e-13 68.6
MsG0180005375.01.T01 AT4G15080 28.244 131 85 3 75 196 175 305 9.70e-12 66.6
MsG0180005375.01.T01 AT4G15080 28.244 131 85 3 75 196 175 305 9.70e-12 66.6
MsG0180005375.01.T01 AT3G22180 26.718 131 87 2 75 196 173 303 5.51e-11 64.3
MsG0180005375.01.T01 AT4G01730 27.820 133 87 1 73 196 157 289 5.88e-11 64.3

Find 117 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGGTTATACTAGCTATT+TGG 0.148377 1:+90983285 MsG0180005375.01.T01:three_prime_UTR
AATCGGGTTCAGCTGTATTA+TGG 0.185783 1:-90982942 None:intergenic
AAATGAACAGTTTCCATTTC+TGG 0.194959 1:+90979338 MsG0180005375.01.T01:five_prime_UTR
ATGTGGATCTCATCTTTATT+TGG 0.195940 1:+90983390 MsG0180005375.01.T01:three_prime_UTR
AGCCCTCAAGGAACAATTTC+AGG 0.201284 1:+90982719 MsG0180005375.01.T01:CDS
AGGGAGAGAGAAAGAGAAAA+AGG 0.224521 1:-90979368 None:intergenic
TGACCTGGTTTGTGCTTATA+AGG 0.264898 1:-90982262 None:intergenic
TCACAATATTTCACCTTTAC+AGG 0.267079 1:-90981802 None:intergenic
CTGATGGATAATAATGATAT+TGG 0.268744 1:+90982134 MsG0180005375.01.T01:CDS
CTTCTTCATGTTTGTTTCTT+CGG 0.274672 1:+90982058 MsG0180005375.01.T01:CDS
TGGTTTGTTGGTGGACTAAC+TGG 0.293277 1:+90982227 MsG0180005375.01.T01:CDS
CATTACTTCCTTTCCAAACT+TGG 0.299890 1:-90979441 None:intergenic
GGACGTGAACCAGATGATTT+AGG 0.344379 1:+90982793 MsG0180005375.01.T01:CDS
AATGAACAGTTTCCATTTCT+GGG 0.344765 1:+90979339 MsG0180005375.01.T01:five_prime_UTR
CTTATTGTTTCATCTCTTTG+TGG 0.349726 1:+90982207 MsG0180005375.01.T01:CDS
TGTGGTTATACTAGCTATTT+GGG 0.353735 1:+90983286 MsG0180005375.01.T01:three_prime_UTR
CAAAGCGCGTGTACCAAGTT+TGG 0.358764 1:+90979428 MsG0180005375.01.T01:CDS
TTCATCTCTTTGTGGTTTGT+TGG 0.359365 1:+90982215 MsG0180005375.01.T01:CDS
CGCTGACTACAGTCATTTCC+CGG 0.363776 1:+90982770 MsG0180005375.01.T01:CDS
ATCGGGTTCAGCTGTATTAT+GGG 0.367393 1:-90982941 None:intergenic
TGAGACATAGTTTCTGCTTT+CGG 0.370907 1:-90983082 None:intergenic
TCATAACGAAACTCTTCTTC+TGG 0.372940 1:-90981703 None:intergenic
GCCCTGAAATTGTTCCTTGA+GGG 0.375186 1:-90982721 None:intergenic
TTCAACACAGTTGTTGCATA+TGG 0.381975 1:-90981866 None:intergenic
GTTGGGAAAGAAGTGGAAAC+TGG 0.383128 1:+90983022 MsG0180005375.01.T01:CDS
GCTTTCGGTGACATTTGAAT+TGG 0.392459 1:-90983067 None:intergenic
GAGTTAAGTAGTTGAACTTT+CGG 0.395557 1:+90983241 MsG0180005375.01.T01:three_prime_UTR
ATAGCTAATGTGGGATTACT+TGG 0.396725 1:+90983167 MsG0180005375.01.T01:three_prime_UTR
TAAAGATGAGATCCACATAT+TGG 0.396946 1:-90983385 None:intergenic
ATCTGATGACAAAATTGAAT+CGG 0.397612 1:-90982959 None:intergenic
ATCTCTTTGTGGTTTGTTGG+TGG 0.397741 1:+90982218 MsG0180005375.01.T01:CDS
GCCATTAAAATCACAGATGC+AGG 0.405346 1:-90982185 None:intergenic
AATCATCTGGTTCACGTCCC+CGG 0.425156 1:-90982789 None:intergenic
GTTTCGATCACCATTGCCCT+TGG 0.426437 1:+90981890 MsG0180005375.01.T01:CDS
AAGGCTTGGTGTTTGTTGTC+CGG 0.437240 1:-90981740 None:intergenic
TGATGGATAATAATGATATT+GGG 0.439446 1:+90982135 MsG0180005375.01.T01:CDS
TGATGCTAGGCACTCGAGTT+GGG 0.442268 1:+90983005 MsG0180005375.01.T01:CDS
CGATCACCATTGCCCTTGGG+TGG 0.452546 1:+90981894 MsG0180005375.01.T01:CDS
ACGAGGACATTCAGAATAGA+AGG 0.454776 1:+90982905 MsG0180005375.01.T01:CDS
CGATCTCCACCTAAATCATC+TGG 0.458038 1:-90982802 None:intergenic
TTTACTTCTGCACGTGATCC+GGG 0.459773 1:+90981655 MsG0180005375.01.T01:CDS
GTTGAAGATGATCTAGATAT+CGG 0.459943 1:+90982835 MsG0180005375.01.T01:CDS
ACCAGCAGGAGGAGTATTCA+TGG 0.466212 1:+90979402 MsG0180005375.01.T01:exon
GCCCTCAAGGAACAATTTCA+GGG 0.468192 1:+90982720 MsG0180005375.01.T01:CDS
TCTAGATCATCTTCAACCTT+AGG 0.476598 1:-90982829 None:intergenic
TTTCGATCACCATTGCCCTT+GGG 0.476678 1:+90981891 MsG0180005375.01.T01:CDS
ATCATCTGGTTCACGTCCCC+GGG 0.476849 1:-90982788 None:intergenic
ATAGCTAGTATAACCACAAA+AGG 0.491160 1:-90983281 None:intergenic
AAAAGGGTAAGACCCAGAAA+TGG 0.493792 1:-90979351 None:intergenic
CCTGCTTAGTTTCAACCAGC+AGG 0.494482 1:+90979388 MsG0180005375.01.T01:five_prime_UTR
CCTGCTGGTTGAAACTAAGC+AGG 0.496363 1:-90979388 None:intergenic
GGTCAATGGCCTTCCTGTAA+AGG 0.502557 1:+90981789 MsG0180005375.01.T01:CDS
CCTTGGGTGGGCCAATGCAT+CGG 0.507687 1:+90981907 MsG0180005375.01.T01:CDS
AGACAAACTGTACCTGTCAT+TGG 0.508660 1:-90983119 None:intergenic
AAAGGAAATGCGCCAATGAC+AGG 0.511765 1:+90983107 MsG0180005375.01.T01:exon
CTGATGCTAGGCACTCGAGT+TGG 0.513944 1:+90983004 MsG0180005375.01.T01:CDS
GCCATGAATACTCCTCCTGC+TGG 0.514096 1:-90979403 None:intergenic
ATCGTACCAGACCGATGCAT+TGG 0.515932 1:-90981918 None:intergenic
AGGTGGAGATCGCCGTCCTA+AGG 0.518925 1:+90982813 MsG0180005375.01.T01:CDS
GGTGGGCCAATGCATCGGTC+TGG 0.526093 1:+90981912 MsG0180005375.01.T01:CDS
TCTGATGACAAAATTGAATC+GGG 0.527605 1:-90982958 None:intergenic
ACAAAAGAAGTAATGGTCAA+TGG 0.531295 1:+90981775 MsG0180005375.01.T01:CDS
TCTGGTGGATGTGAATTCCT+CGG 0.532209 1:-90981685 None:intergenic
GATCACCATTGCCCTTGGGT+GGG 0.532792 1:+90981895 MsG0180005375.01.T01:CDS
GCTGACTACAGTCATTTCCC+GGG 0.535809 1:+90982771 MsG0180005375.01.T01:CDS
TCCGATACAGAGCTGATGGC+CGG 0.537522 1:+90982635 MsG0180005375.01.T01:CDS
TGATATTGGGACGGTGTGGA+AGG 0.541635 1:+90982148 MsG0180005375.01.T01:CDS
GTTCGTGGGAACTGAAGGCT+TGG 0.542418 1:-90981754 None:intergenic
TGGGATTACTTGGATAGTAA+AGG 0.545195 1:+90983177 MsG0180005375.01.T01:three_prime_UTR
GTTTAAGAGACAAAGTGTCT+TGG 0.546034 1:+90983336 MsG0180005375.01.T01:three_prime_UTR
CCCACGAACAAAAGAAGTAA+TGG 0.547877 1:+90981768 MsG0180005375.01.T01:CDS
GATGTCGAACATAGCTAATG+TGG 0.548106 1:+90983157 MsG0180005375.01.T01:three_prime_UTR
CCGATGCATTGGCCCACCCA+AGG 0.548990 1:-90981907 None:intergenic
CTTGATGTAAAATGCTGAGA+AGG 0.551418 1:-90982108 None:intergenic
TCCGGCCATCAGCTCTGTAT+CGG 0.557777 1:-90982636 None:intergenic
CCAATTCAAAATCTGATCAA+AGG 0.559165 1:-90983215 None:intergenic
TAACGAAACTCTTCTTCTGG+TGG 0.560200 1:-90981700 None:intergenic
TATGAATCTTCTACAGTAGC+CGG 0.561324 1:+90981721 MsG0180005375.01.T01:CDS
TCAGTTGAATCAGAGTGCGT+TGG 0.562752 1:-90979311 None:intergenic
AACTTCCGATACAGAGCTGA+TGG 0.564513 1:+90982631 MsG0180005375.01.T01:CDS
CAGAAACTATGTCTCATCAA+AGG 0.566125 1:+90983089 MsG0180005375.01.T01:CDS
CGATGCATTGGCCCACCCAA+GGG 0.571945 1:-90981906 None:intergenic
CCATTAAAATCACAGATGCA+GGG 0.572375 1:-90982184 None:intergenic
ATTGGCCCACCCAAGGGCAA+TGG 0.573287 1:-90981900 None:intergenic
CCACAATACGATCTGATGCT+AGG 0.575400 1:+90982992 MsG0180005375.01.T01:CDS
GATTACTTGGATAGTAAAGG+TGG 0.575915 1:+90983180 MsG0180005375.01.T01:three_prime_UTR
AATATTTCACCTTTACAGGA+AGG 0.578975 1:-90981798 None:intergenic
GCACAGAAATAAAGCCCTCA+AGG 0.581420 1:+90982707 MsG0180005375.01.T01:CDS
AGCAATGCGAGCAACGAGGA+GGG 0.589494 1:-90981843 None:intergenic
GAATTCCTCGGAATGATACC+CGG 0.590985 1:-90981673 None:intergenic
CGCGTGTACCAAGTTTGGAA+AGG 0.595301 1:+90979433 MsG0180005375.01.T01:CDS
GTTATACTAGCTATTTGGGA+AGG 0.598751 1:+90983290 MsG0180005375.01.T01:three_prime_UTR
TATTGAAGATATCACAGCGT+AGG 0.599952 1:+90982866 MsG0180005375.01.T01:CDS
AAACAAACATGAAGAAGTAA+CGG 0.600646 1:-90982052 None:intergenic
AGCCCTGAAATTGTTCCTTG+AGG 0.605131 1:-90982722 None:intergenic
TTGGGAAAGAAGTGGAAACT+GGG 0.614418 1:+90983023 MsG0180005375.01.T01:CDS
CACTCGAGTTGGGAAAGAAG+TGG 0.619470 1:+90983015 MsG0180005375.01.T01:CDS
CCTAGCATCAGATCGTATTG+TGG 0.626014 1:-90982992 None:intergenic
AAGTAAAACAGAGAAGCACC+AGG 0.628755 1:-90981639 None:intergenic
TCGGGTTCAGCTGTATTATG+GGG 0.630608 1:-90982940 None:intergenic
ATTCAGAATAGAAGGAGCAA+TGG 0.632276 1:+90982913 MsG0180005375.01.T01:CDS
ATGTCGAACATAGCTAATGT+GGG 0.632714 1:+90983158 MsG0180005375.01.T01:three_prime_UTR
GCTTAGTTTCAACCAGCAGG+AGG 0.633114 1:+90979391 MsG0180005375.01.T01:five_prime_UTR
CGTGAACCAGATGATTTAGG+TGG 0.634926 1:+90982796 MsG0180005375.01.T01:CDS
GAGCAATGCGAGCAACGAGG+AGG 0.635551 1:-90981844 None:intergenic
CATTAAAATCACAGATGCAG+GGG 0.637602 1:-90982183 None:intergenic
TTGTTCAAGAGGAGGTACAA+AGG 0.639298 1:+90982746 MsG0180005375.01.T01:CDS
CTGCTGGTTGAAACTAAGCA+GGG 0.641919 1:-90979387 None:intergenic
GATCATCTTCAACCTTAGGA+CGG 0.645908 1:-90982825 None:intergenic
GTACCTTATAAGCACAAACC+AGG 0.647591 1:+90982259 MsG0180005375.01.T01:CDS
GTGATCCGGGTATCATTCCG+AGG 0.656598 1:+90981668 MsG0180005375.01.T01:CDS
ATAATGATATTGGGACGGTG+TGG 0.667624 1:+90982144 MsG0180005375.01.T01:CDS
GGATAATAATGATATTGGGA+CGG 0.677213 1:+90982139 MsG0180005375.01.T01:CDS
CGGGAAATGACTGTAGTCAG+CGG 0.680419 1:-90982769 None:intergenic
GAATATTGAGCAACTCGACG+AGG 0.690893 1:+90982888 MsG0180005375.01.T01:CDS
CTGACTACAGTCATTTCCCG+GGG 0.712910 1:+90982772 MsG0180005375.01.T01:CDS
ATGGAGCAATGCGAGCAACG+AGG 0.766529 1:-90981847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATATTTAGTTAGTGT+TGG - Chr1:90980428-90980447 None:intergenic 15.0%
!! ATTTATATTTAGTTAGTGTT+GGG - Chr1:90980427-90980446 None:intergenic 15.0%
!! ATTTATTGTATCTCATTTAT+TGG + Chr1:90982320-90982339 MsG0180005375.01.T01:intron 15.0%
!! TTGATATTGATACTATATAT+AGG + Chr1:90980691-90980710 MsG0180005375.01.T01:intron 15.0%
!! TTGTGAGTAAAATATTAAAT+TGG + Chr1:90980455-90980474 MsG0180005375.01.T01:intron 15.0%
!! TTTATTGTATCTCATTTATT+GGG + Chr1:90982321-90982340 MsG0180005375.01.T01:intron 15.0%
!!! CTTTTGTTCTAATTTTTTTT+GGG + Chr1:90982005-90982024 MsG0180005375.01.T01:intron 15.0%
!!! TATTTCTAATTAATACACTT+TGG - Chr1:90982417-90982436 None:intergenic 15.0%
!!! TGTTTTTTTTGTTTGTTTTT+GGG + Chr1:90979708-90979727 MsG0180005375.01.T01:intron 15.0%
!!! TTCTTTATATATTTTCAGAT+TGG + Chr1:90980809-90980828 MsG0180005375.01.T01:intron 15.0%
!! ACTTATTTAAATTGAGACTA+TGG - Chr1:90981264-90981283 None:intergenic 20.0%
!! ATATTGGACAGTTAAAAAAT+GGG - Chr1:90983372-90983391 None:intergenic 20.0%
!! ATTAAATTGGTTGGATTAAA+TGG + Chr1:90980468-90980487 MsG0180005375.01.T01:intron 20.0%
!! ATTTAGTTAATCATATGTGT+CGG - Chr1:90981395-90981414 None:intergenic 20.0%
!! CTCAGTATATTTGTATTATT+GGG + Chr1:90979956-90979975 MsG0180005375.01.T01:intron 20.0%
!! GAGTAAAATATTAAATTGGT+TGG + Chr1:90980459-90980478 MsG0180005375.01.T01:intron 20.0%
!! TAAAAATAGAAGAAAGAATG+AGG - Chr1:90979484-90979503 None:intergenic 20.0%
!! TAGTAAAATCAAACAGTATT+AGG - Chr1:90981505-90981524 None:intergenic 20.0%
!! TCAGTATATTTGTATTATTG+GGG + Chr1:90979957-90979976 MsG0180005375.01.T01:intron 20.0%
!! TTATTGTATCTCATTTATTG+GGG + Chr1:90982322-90982341 MsG0180005375.01.T01:intron 20.0%
!! TTCTTCTTTGATTATTAGTT+AGG + Chr1:90979644-90979663 MsG0180005375.01.T01:intron 20.0%
!! TTTATATTTAGTTAGTGTTG+GGG - Chr1:90980426-90980445 None:intergenic 20.0%
!!! AGGTTGTTTAAATAATTTTC+TGG + Chr1:90982675-90982694 MsG0180005375.01.T01:CDS 20.0%
!!! ATACTGTTTGATTTTACTAA+AGG + Chr1:90981506-90981525 MsG0180005375.01.T01:intron 20.0%
!!! GCTTTTGTTCTAATTTTTTT+TGG + Chr1:90982004-90982023 MsG0180005375.01.T01:intron 20.0%
!!! GTGTTTTTTTTGTTTGTTTT+TGG + Chr1:90979707-90979726 MsG0180005375.01.T01:intron 20.0%
!!! TCATTTTCTCAAATTATTAC+CGG + Chr1:90981419-90981438 MsG0180005375.01.T01:intron 20.0%
!!! TGATGGATAATAATGATATT+GGG + Chr1:90982135-90982154 MsG0180005375.01.T01:CDS 20.0%
!!! TTTTAGCTCATTTTTCATTT+GGG + Chr1:90979499-90979518 MsG0180005375.01.T01:intron 20.0%
!!! TTTTTAGCTCATTTTTCATT+TGG + Chr1:90979498-90979517 MsG0180005375.01.T01:intron 20.0%
! AAACAAACATGAAGAAGTAA+CGG - Chr1:90982055-90982074 None:intergenic 25.0%
! AATACACAAAAGATGATAAC+TGG - Chr1:90981072-90981091 None:intergenic 25.0%
! ATCCATTTATTTCCATTGTT+GGG + Chr1:90981218-90981237 MsG0180005375.01.T01:intron 25.0%
! ATCTGATGACAAAATTGAAT+CGG - Chr1:90982962-90982981 None:intergenic 25.0%
! CATATTGGACAGTTAAAAAA+TGG - Chr1:90983373-90983392 None:intergenic 25.0%
! CCAATAATACAAATATACTG+AGG - Chr1:90979958-90979977 None:intergenic 25.0%
! CCTCAGTATATTTGTATTAT+TGG + Chr1:90979955-90979974 MsG0180005375.01.T01:intron 25.0%
! CTGAATGATGAAAATATTCA+TGG - Chr1:90982577-90982596 None:intergenic 25.0%
! GACCTAAAAATATATACTGT+GGG - Chr1:90981620-90981639 None:intergenic 25.0%
! GTAATCATAAGTACAAAGTT+CGG - Chr1:90979835-90979854 None:intergenic 25.0%
! GTTGAATGTTGAGTATTATT+TGG + Chr1:90979672-90979691 MsG0180005375.01.T01:intron 25.0%
! TATAGATCGTTACAAAAGAT+TGG - Chr1:90981584-90981603 None:intergenic 25.0%
! TATCCATTTATTTCCATTGT+TGG + Chr1:90981217-90981236 MsG0180005375.01.T01:intron 25.0%
! TATTGGACAGTTAAAAAATG+GGG - Chr1:90983371-90983390 None:intergenic 25.0%
! TCTACAATTGTATAATCAGT+GGG + Chr1:90979734-90979753 MsG0180005375.01.T01:intron 25.0%
! TTCTACAATTGTATAATCAG+TGG + Chr1:90979733-90979752 MsG0180005375.01.T01:intron 25.0%
! TTGTTCAAAAAAGACAGTAT+AGG - Chr1:90980845-90980864 None:intergenic 25.0%
! TTTGTACTATTAATGCATCA+GGG + Chr1:90980782-90980801 MsG0180005375.01.T01:intron 25.0%
!! AAAACTAAGATTACCTTTTG+TGG + Chr1:90983268-90983287 MsG0180005375.01.T01:three_prime_UTR 25.0%
!! ACATAATGCCTTAATGTTTT+GGG + Chr1:90980320-90980339 MsG0180005375.01.T01:intron 25.0%
!! ACATTAAGGCATTATGTATA+TGG - Chr1:90980317-90980336 None:intergenic 25.0%
!! ATCCCACAGTATATATTTTT+AGG + Chr1:90981615-90981634 MsG0180005375.01.T01:intron 25.0%
!! CAATTTTCCATTTGTATCTT+TGG + Chr1:90980012-90980031 MsG0180005375.01.T01:intron 25.0%
!! CTGATGGATAATAATGATAT+TGG + Chr1:90982134-90982153 MsG0180005375.01.T01:CDS 25.0%
!! CTTTTGCAGAAATTCATATT+GGG + Chr1:90980982-90981001 MsG0180005375.01.T01:intron 25.0%
!! GCATTTTCTTCATATTATTC+AGG + Chr1:90981114-90981133 MsG0180005375.01.T01:intron 25.0%
!! TACATAATGCCTTAATGTTT+TGG + Chr1:90980319-90980338 MsG0180005375.01.T01:intron 25.0%
!! TAGAAGTATATGCATAAACA+TGG + Chr1:90980658-90980677 MsG0180005375.01.T01:intron 25.0%
!! TCAGAAGTCATTATTTCTTT+GGG - Chr1:90980564-90980583 None:intergenic 25.0%
!! TCTTTTGCAGAAATTCATAT+TGG + Chr1:90980981-90981000 MsG0180005375.01.T01:intron 25.0%
!! TGTTTGTTGATTATTGAAGA+AGG + Chr1:90980116-90980135 MsG0180005375.01.T01:intron 25.0%
!! TTCAGAAGTCATTATTTCTT+TGG - Chr1:90980565-90980584 None:intergenic 25.0%
!!! AACTGTACTATTTTGTTATG+TGG + Chr1:90982526-90982545 MsG0180005375.01.T01:intron 25.0%
!!! TGTTTGATTTTACTAAAGGA+AGG + Chr1:90981510-90981529 MsG0180005375.01.T01:intron 25.0%
!!! TTTTTTAACTGTCCAATATG+TGG + Chr1:90983373-90983392 MsG0180005375.01.T01:three_prime_UTR 25.0%
AAAAAGACAGTATAGGAGAT+TGG - Chr1:90980838-90980857 None:intergenic 30.0%
AAATGAACAGTTTCCATTTC+TGG + Chr1:90979338-90979357 MsG0180005375.01.T01:five_prime_UTR 30.0%
AACATTTAACAGAACTTACG+TGG - Chr1:90981176-90981195 None:intergenic 30.0%
AATATTTCACCTTTACAGGA+AGG - Chr1:90981801-90981820 None:intergenic 30.0%
AATGAACAGTTTCCATTTCT+GGG + Chr1:90979339-90979358 MsG0180005375.01.T01:five_prime_UTR 30.0%
ACAAAAGAAGTAATGGTCAA+TGG + Chr1:90981775-90981794 MsG0180005375.01.T01:CDS 30.0%
ACCAAAAAAATTGTGAGTGT+TGG + Chr1:90979888-90979907 MsG0180005375.01.T01:intron 30.0%
ACTTTGTACTTATGATTACG+AGG + Chr1:90979836-90979855 MsG0180005375.01.T01:intron 30.0%
ATAGCTAGTATAACCACAAA+AGG - Chr1:90983284-90983303 None:intergenic 30.0%
ATATTTGTATTATTGGGGAG+AGG + Chr1:90979962-90979981 MsG0180005375.01.T01:intron 30.0%
ATGTGGAAATTAATACGCAA+AGG + Chr1:90982543-90982562 MsG0180005375.01.T01:intron 30.0%
ATGTGGATCTCATCTTTATT+TGG + Chr1:90983390-90983409 MsG0180005375.01.T01:three_prime_UTR 30.0%
ATTGGACAGTTAAAAAATGG+GGG - Chr1:90983370-90983389 None:intergenic 30.0%
CAAACATCCAAAGATACAAA+TGG - Chr1:90980022-90980041 None:intergenic 30.0%
CCAATTCAAAATCTGATCAA+AGG - Chr1:90983218-90983237 None:intergenic 30.0%
CTCGATTAAAAACATTGATC+CGG - Chr1:90982657-90982676 None:intergenic 30.0%
CTTATTGTTTCATCTCTTTG+TGG + Chr1:90982207-90982226 MsG0180005375.01.T01:CDS 30.0%
GAGTTAAGTAGTTGAACTTT+CGG + Chr1:90983241-90983260 MsG0180005375.01.T01:three_prime_UTR 30.0%
GGACCTAAAAATATATACTG+TGG - Chr1:90981621-90981640 None:intergenic 30.0%
GGATAATAATGATATTGGGA+CGG + Chr1:90982139-90982158 MsG0180005375.01.T01:CDS 30.0%
GTTGAAGATGATCTAGATAT+CGG + Chr1:90982835-90982854 MsG0180005375.01.T01:CDS 30.0%
GTTTGTACTATTAATGCATC+AGG + Chr1:90980781-90980800 MsG0180005375.01.T01:intron 30.0%
TAAAGATGAGATCCACATAT+TGG - Chr1:90983388-90983407 None:intergenic 30.0%
TACCCCATTGATAAAGTAAA+GGG + Chr1:90980532-90980551 MsG0180005375.01.T01:intron 30.0%
TCACAATATTTCACCTTTAC+AGG - Chr1:90981805-90981824 None:intergenic 30.0%
TCACCCTTTACTTTATCAAT+GGG - Chr1:90980538-90980557 None:intergenic 30.0%
TCAGATATGATTACAATCAC+TGG + Chr1:90980068-90980087 MsG0180005375.01.T01:intron 30.0%
TCTGATGACAAAATTGAATC+GGG - Chr1:90982961-90982980 None:intergenic 30.0%
TGAAAGATATAGTGCATGAT+AGG + Chr1:90980588-90980607 MsG0180005375.01.T01:intron 30.0%
TGAATTTCTGCAAAAGATTC+AGG - Chr1:90980978-90980997 None:intergenic 30.0%
TGTGGTTATACTAGCTATTT+GGG + Chr1:90983286-90983305 MsG0180005375.01.T01:three_prime_UTR 30.0%
TTACCCCATTGATAAAGTAA+AGG + Chr1:90980531-90980550 MsG0180005375.01.T01:intron 30.0%
TTGTGGTTATACTAGCTATT+TGG + Chr1:90983285-90983304 MsG0180005375.01.T01:three_prime_UTR 30.0%
! AACATTGAAAGCATAACTGA+AGG - Chr1:90980100-90980119 None:intergenic 30.0%
! CCTTTGATCAGATTTTGAAT+TGG + Chr1:90983215-90983234 MsG0180005375.01.T01:three_prime_UTR 30.0%
! CTGTTAATGCTGTAATCTTT+TGG + Chr1:90980874-90980893 MsG0180005375.01.T01:intron 30.0%
! CTTCTTCATGTTTGTTTCTT+CGG + Chr1:90982058-90982077 MsG0180005375.01.T01:CDS 30.0%
! TCTTTTGTGTATTTGTAGCA+AGG + Chr1:90981079-90981098 MsG0180005375.01.T01:intron 30.0%
! TGATCAGATTTTGAATTGGA+AGG + Chr1:90983219-90983238 MsG0180005375.01.T01:three_prime_UTR 30.0%
!! ATTTTACATCAAGGTTCTGA+TGG + Chr1:90982118-90982137 MsG0180005375.01.T01:CDS 30.0%
!! TTGGTTTTCTAGTCAACATT+GGG + Chr1:90980752-90980771 MsG0180005375.01.T01:intron 30.0%
!!! ACCAACACTCACAATTTTTT+TGG - Chr1:90979892-90979911 None:intergenic 30.0%
!!! AGGATATGCTATTTTAGTAG+TGG + Chr1:90981134-90981153 MsG0180005375.01.T01:intron 30.0%
!!! CAGTATATATTTTTAGGTCC+TGG + Chr1:90981621-90981640 MsG0180005375.01.T01:intron 30.0%
!!! TTTGGTTTTCTAGTCAACAT+TGG + Chr1:90980751-90980770 MsG0180005375.01.T01:intron 30.0%
!!! TTTTTTTGGTTTTAACCCTC+CGG - Chr1:90979878-90979897 None:intergenic 30.0%
AAAAGAGAAATTGACTGACC+TGG - Chr1:90982280-90982299 None:intergenic 35.0%
ATAGCTAATGTGGGATTACT+TGG + Chr1:90983167-90983186 MsG0180005375.01.T01:three_prime_UTR 35.0%
ATGTCGAACATAGCTAATGT+GGG + Chr1:90983158-90983177 MsG0180005375.01.T01:three_prime_UTR 35.0%
ATTATGAATGAGAGCAGTGT+TGG + Chr1:90980274-90980293 MsG0180005375.01.T01:intron 35.0%
ATTCAGAATAGAAGGAGCAA+TGG + Chr1:90982913-90982932 MsG0180005375.01.T01:CDS 35.0%
ATTGGTTGGATTAAATGGTC+TGG + Chr1:90980473-90980492 MsG0180005375.01.T01:intron 35.0%
CAAACCAAGGAAATCTGAAA+GGG + Chr1:90982371-90982390 MsG0180005375.01.T01:intron 35.0%
CACCCTTTACTTTATCAATG+GGG - Chr1:90980537-90980556 None:intergenic 35.0%
CAGAAACTATGTCTCATCAA+AGG + Chr1:90983089-90983108 MsG0180005375.01.T01:CDS 35.0%
CAGGAGATAATTACGAGATA+TGG - Chr1:90980959-90980978 None:intergenic 35.0%
CATTAAAATCACAGATGCAG+GGG - Chr1:90982186-90982205 None:intergenic 35.0%
CATTACTTCCTTTCCAAACT+TGG - Chr1:90979444-90979463 None:intergenic 35.0%
CCATTAAAATCACAGATGCA+GGG - Chr1:90982187-90982206 None:intergenic 35.0%
CTCACCCTTTACTTTATCAA+TGG - Chr1:90980539-90980558 None:intergenic 35.0%
CTCTCATTCATAATCGATGT+GGG - Chr1:90980268-90980287 None:intergenic 35.0%
CTTGATGTAAAATGCTGAGA+AGG - Chr1:90982111-90982130 None:intergenic 35.0%
GAAAACCAAAACACTTCAGT+AGG - Chr1:90980741-90980760 None:intergenic 35.0%
GATCCAGTCTCAAACATATT+TGG + Chr1:90979787-90979806 MsG0180005375.01.T01:intron 35.0%
GATTACTTGGATAGTAAAGG+TGG + Chr1:90983180-90983199 MsG0180005375.01.T01:three_prime_UTR 35.0%
GTCCCAACAATGGAAATAAA+TGG - Chr1:90981223-90981242 None:intergenic 35.0%
GTTATACTAGCTATTTGGGA+AGG + Chr1:90983290-90983309 MsG0180005375.01.T01:three_prime_UTR 35.0%
GTTTGTAACTATGCAAACCA+AGG + Chr1:90982358-90982377 MsG0180005375.01.T01:intron 35.0%
TATGAATCTTCTACAGTAGC+CGG + Chr1:90981721-90981740 MsG0180005375.01.T01:CDS 35.0%
TATTGAAGATATCACAGCGT+AGG + Chr1:90982866-90982885 MsG0180005375.01.T01:CDS 35.0%
TCATAACGAAACTCTTCTTC+TGG - Chr1:90981706-90981725 None:intergenic 35.0%
TCTAGATCATCTTCAACCTT+AGG - Chr1:90982832-90982851 None:intergenic 35.0%
TCTCAAATTATTACCGGTGT+CGG + Chr1:90981425-90981444 MsG0180005375.01.T01:intron 35.0%
TCTTCTTCATTGATGTGCTT+GGG + Chr1:90981968-90981987 MsG0180005375.01.T01:intron 35.0%
TGAGACATAGTTTCTGCTTT+CGG - Chr1:90983085-90983104 None:intergenic 35.0%
TGCAGAAATTCATATTGGGA+GGG + Chr1:90980986-90981005 MsG0180005375.01.T01:intron 35.0%
TGGGATTACTTGGATAGTAA+AGG + Chr1:90983177-90983196 MsG0180005375.01.T01:three_prime_UTR 35.0%
TTATTTCCATTGTTGGGACT+TGG + Chr1:90981224-90981243 MsG0180005375.01.T01:intron 35.0%
TTCAACACAGTTGTTGCATA+TGG - Chr1:90981869-90981888 None:intergenic 35.0%
TTCTTCTTCATTGATGTGCT+TGG + Chr1:90981967-90981986 MsG0180005375.01.T01:intron 35.0%
TTGCAGAAATTCATATTGGG+AGG + Chr1:90980985-90981004 MsG0180005375.01.T01:intron 35.0%
! ACCATTACTTCTTTTGTTCG+TGG - Chr1:90981772-90981791 None:intergenic 35.0%
! CAGTGTTGGATATATAAGAG+AGG + Chr1:90980288-90980307 MsG0180005375.01.T01:intron 35.0%
! CCATTACTTCTTTTGTTCGT+GGG - Chr1:90981771-90981790 None:intergenic 35.0%
! CTTCTCAGCATTTTACATCA+AGG + Chr1:90982109-90982128 MsG0180005375.01.T01:CDS 35.0%
! GCAAATCTTTTGAATGCACA+AGG + Chr1:90982454-90982473 MsG0180005375.01.T01:intron 35.0%
! GTTTAAGAGACAAAGTGTCT+TGG + Chr1:90983336-90983355 MsG0180005375.01.T01:three_prime_UTR 35.0%
! TAGCCAAATATGTTTGAGAC+TGG - Chr1:90979793-90979812 None:intergenic 35.0%
! TATTTGTAGCAAGGCATCTT+CGG + Chr1:90981088-90981107 MsG0180005375.01.T01:intron 35.0%
! TCTGTATCGGAAGTTTTCAT+AGG - Chr1:90982626-90982645 None:intergenic 35.0%
! TGGGTATGTTCTAGATTTCT+GGG + Chr1:90979518-90979537 MsG0180005375.01.T01:intron 35.0%
! TTCATCTCTTTGTGGTTTGT+TGG + Chr1:90982215-90982234 MsG0180005375.01.T01:CDS 35.0%
! TTGGGTATGTTCTAGATTTC+TGG + Chr1:90979517-90979536 MsG0180005375.01.T01:intron 35.0%
!! AAAATTGTGAGTGTTGGTGT+TGG + Chr1:90979894-90979913 MsG0180005375.01.T01:intron 35.0%
!! AAATTGTGAGTGTTGGTGTT+GGG + Chr1:90979895-90979914 MsG0180005375.01.T01:intron 35.0%
!! CGGATCAATGTTTTTAATCG+AGG + Chr1:90982655-90982674 MsG0180005375.01.T01:CDS 35.0%
!! TAATGCCTTAATGTTTTGGG+TGG + Chr1:90980323-90980342 MsG0180005375.01.T01:intron 35.0%
AAAAGGGTAAGACCCAGAAA+TGG - Chr1:90979354-90979373 None:intergenic 40.0%
AATCGGGTTCAGCTGTATTA+TGG - Chr1:90982945-90982964 None:intergenic 40.0%
ACGAGGACATTCAGAATAGA+AGG + Chr1:90982905-90982924 MsG0180005375.01.T01:CDS 40.0%
AGAAATTCATATTGGGAGGG+AGG + Chr1:90980989-90981008 MsG0180005375.01.T01:intron 40.0%
AGAAGGATGACATTCATGTC+AGG + Chr1:90980133-90980152 MsG0180005375.01.T01:intron 40.0%
AGACAAACTGTACCTGTCAT+TGG - Chr1:90983122-90983141 None:intergenic 40.0%
AGGGAGAGAGAAAGAGAAAA+AGG - Chr1:90979371-90979390 None:intergenic 40.0%
ATAATGATATTGGGACGGTG+TGG + Chr1:90982144-90982163 MsG0180005375.01.T01:CDS 40.0%
ATCGGGTTCAGCTGTATTAT+GGG - Chr1:90982944-90982963 None:intergenic 40.0%
CAACAACAGAGTGATAAGCA+GGG - Chr1:90981040-90981059 None:intergenic 40.0%
CATCTCCACCCAAAACATTA+AGG - Chr1:90980331-90980350 None:intergenic 40.0%
CCCACGAACAAAAGAAGTAA+TGG + Chr1:90981768-90981787 MsG0180005375.01.T01:CDS 40.0%
CTAACAGGTAAGTAGGAAGA+TGG - Chr1:90981317-90981336 None:intergenic 40.0%
CTTACCTGTTAGATGAAGCA+CGG + Chr1:90981325-90981344 MsG0180005375.01.T01:intron 40.0%
GATCATCTTCAACCTTAGGA+CGG - Chr1:90982828-90982847 None:intergenic 40.0%
GATGTCGAACATAGCTAATG+TGG + Chr1:90983157-90983176 MsG0180005375.01.T01:three_prime_UTR 40.0%
GCAAACCAAGGAAATCTGAA+AGG + Chr1:90982370-90982389 MsG0180005375.01.T01:intron 40.0%
GCCATTAAAATCACAGATGC+AGG - Chr1:90982188-90982207 None:intergenic 40.0%
GCTCTCATTCATAATCGATG+TGG - Chr1:90980269-90980288 None:intergenic 40.0%
GCTTCATCTAACAGGTAAGT+AGG - Chr1:90981324-90981343 None:intergenic 40.0%
GCTTTCGGTGACATTTGAAT+TGG - Chr1:90983070-90983089 None:intergenic 40.0%
GGCTAGACTTTACTTAGCTT+TGG + Chr1:90979808-90979827 MsG0180005375.01.T01:intron 40.0%
GGGAGAGAGAAAGAGAAAAA+GGG - Chr1:90979370-90979389 None:intergenic 40.0%
GGGTCTGTGATTTCTTTAGT+AGG + Chr1:90979538-90979557 MsG0180005375.01.T01:intron 40.0%
GTACCTTATAAGCACAAACC+AGG + Chr1:90982259-90982278 MsG0180005375.01.T01:CDS 40.0%
TAACGAAACTCTTCTTCTGG+TGG - Chr1:90981703-90981722 None:intergenic 40.0%
TCAACAACAGAGTGATAAGC+AGG - Chr1:90981041-90981060 None:intergenic 40.0%
TTGGGAAAGAAGTGGAAACT+GGG + Chr1:90983023-90983042 MsG0180005375.01.T01:CDS 40.0%
TTTGAGTAGAGCTATCATGG+AGG + Chr1:90980180-90980199 MsG0180005375.01.T01:intron 40.0%
! CCCTGCATCTGTGATTTTAA+TGG + Chr1:90982184-90982203 MsG0180005375.01.T01:CDS 40.0%
! TCATGTCAGGTGGTTTTTGT+TGG + Chr1:90980146-90980165 MsG0180005375.01.T01:intron 40.0%
! TGACCTGGTTTGTGCTTATA+AGG - Chr1:90982265-90982284 None:intergenic 40.0%
! TGCTTTGAGTAGAGCTATCA+TGG + Chr1:90980177-90980196 MsG0180005375.01.T01:intron 40.0%
! TTGTTCAAGAGGAGGTACAA+AGG + Chr1:90982746-90982765 MsG0180005375.01.T01:CDS 40.0%
! TTTCAGGGCTTTTGTTCAAG+AGG + Chr1:90982735-90982754 MsG0180005375.01.T01:CDS 40.0%
! TTTTACTTCTGCACGTGATC+CGG + Chr1:90981654-90981673 MsG0180005375.01.T01:CDS 40.0%
!! AAGTAAAACAGAGAAGCACC+AGG - Chr1:90981642-90981661 None:intergenic 40.0%
!! ATCTCTTTGTGGTTTGTTGG+TGG + Chr1:90982218-90982237 MsG0180005375.01.T01:CDS 40.0%
!! TGGGACTTGGTTTGTGTTTA+AGG + Chr1:90981237-90981256 MsG0180005375.01.T01:intron 40.0%
!! TTGCACCTACTGAAGTGTTT+TGG + Chr1:90980733-90980752 MsG0180005375.01.T01:intron 40.0%
!!! CTGAGCTAGTTTTTTGTTGC+TGG + Chr1:90979571-90979590 MsG0180005375.01.T01:intron 40.0%
AAAGGAAATGCGCCAATGAC+AGG + Chr1:90983107-90983126 MsG0180005375.01.T01:exon 45.0%
AACTTCCGATACAGAGCTGA+TGG + Chr1:90982631-90982650 MsG0180005375.01.T01:CDS 45.0%
ACAGTCAGAAGTCACTTCAC+AGG - Chr1:90980220-90980239 None:intergenic 45.0%
AGCCCTCAAGGAACAATTTC+AGG + Chr1:90982719-90982738 MsG0180005375.01.T01:CDS 45.0%
AGCCCTGAAATTGTTCCTTG+AGG - Chr1:90982725-90982744 None:intergenic 45.0%
AGGATGACATTCATGTCAGG+TGG + Chr1:90980136-90980155 MsG0180005375.01.T01:intron 45.0%
ATCGCCCTTTCAGATTTCCT+TGG - Chr1:90982378-90982397 None:intergenic 45.0%
ATGCAGTGTCAAGGTCTCTA+GGG + Chr1:90980348-90980367 MsG0180005375.01.T01:intron 45.0%
ATTACGAGGCCTCATTTCCT+AGG + Chr1:90979850-90979869 MsG0180005375.01.T01:intron 45.0%
ATTCATATTGGGAGGGAGGT+TGG + Chr1:90980993-90981012 MsG0180005375.01.T01:intron 45.0%
CACAAACCAAGTCCCAACAA+TGG - Chr1:90981233-90981252 None:intergenic 45.0%
CACGATACAAAAACCGACAC+CGG - Chr1:90981441-90981460 None:intergenic 45.0%
CAGTCAGAAGTCACTTCACA+GGG - Chr1:90980219-90980238 None:intergenic 45.0%
CCACAATACGATCTGATGCT+AGG + Chr1:90982992-90983011 MsG0180005375.01.T01:CDS 45.0%
CCTAGCATCAGATCGTATTG+TGG - Chr1:90982995-90983014 None:intergenic 45.0%
CGATCTCCACCTAAATCATC+TGG - Chr1:90982805-90982824 None:intergenic 45.0%
CGTGAACCAGATGATTTAGG+TGG + Chr1:90982796-90982815 MsG0180005375.01.T01:CDS 45.0%
GAATATTGAGCAACTCGACG+AGG + Chr1:90982888-90982907 MsG0180005375.01.T01:CDS 45.0%
GAATGCACAAGGCATGCTAT+GGG + Chr1:90982465-90982484 MsG0180005375.01.T01:intron 45.0%
GAATTCCTCGGAATGATACC+CGG - Chr1:90981676-90981695 None:intergenic 45.0%
GCACAGAAATAAAGCCCTCA+AGG + Chr1:90982707-90982726 MsG0180005375.01.T01:CDS 45.0%
GCCCTCAAGGAACAATTTCA+GGG + Chr1:90982720-90982739 MsG0180005375.01.T01:CDS 45.0%
GCCCTGAAATTGTTCCTTGA+GGG - Chr1:90982724-90982743 None:intergenic 45.0%
GGACGTGAACCAGATGATTT+AGG + Chr1:90982793-90982812 MsG0180005375.01.T01:CDS 45.0%
GGTTGGATTAAATGGTCTGG+AGG + Chr1:90980476-90980495 MsG0180005375.01.T01:intron 45.0%
GTGAAGTGACTTCTGACTGT+TGG + Chr1:90980220-90980239 MsG0180005375.01.T01:intron 45.0%
GTTGGGAAAGAAGTGGAAAC+TGG + Chr1:90983022-90983041 MsG0180005375.01.T01:CDS 45.0%
TCAGTTGAATCAGAGTGCGT+TGG - Chr1:90979314-90979333 None:intergenic 45.0%
TCGGGTTCAGCTGTATTATG+GGG - Chr1:90982943-90982962 None:intergenic 45.0%
TGAATGCACAAGGCATGCTA+TGG + Chr1:90982464-90982483 MsG0180005375.01.T01:intron 45.0%
TGCATCGTGAGACACAAACA+CGG - Chr1:90981465-90981484 None:intergenic 45.0%
TTTACTTCTGCACGTGATCC+GGG + Chr1:90981655-90981674 MsG0180005375.01.T01:CDS 45.0%
TTTCGATCACCATTGCCCTT+GGG + Chr1:90981891-90981910 MsG0180005375.01.T01:CDS 45.0%
! CTGCTGGTTGAAACTAAGCA+GGG - Chr1:90979390-90979409 None:intergenic 45.0%
! CTTTTGTTCGTGGGAACTGA+AGG - Chr1:90981762-90981781 None:intergenic 45.0%
! GTTTGAGACTGGATCGAACT+CGG - Chr1:90979782-90979801 None:intergenic 45.0%
! TCTGGTGGATGTGAATTCCT+CGG - Chr1:90981688-90981707 None:intergenic 45.0%
! TGGGTTTTTCCAATGTGCAG+AGG + Chr1:90982024-90982043 MsG0180005375.01.T01:intron 45.0%
!! AAGGCTTGGTGTTTGTTGTC+CGG - Chr1:90981743-90981762 None:intergenic 45.0%
!! TGGTTTGTTGGTGGACTAAC+TGG + Chr1:90982227-90982246 MsG0180005375.01.T01:CDS 45.0%
!! GTAAATATATATAATATATT+AGG - Chr1:90981295-90981314 None:intergenic 5.0%
ACGGTAGTTCCTCTGCACAT+TGG - Chr1:90982036-90982055 None:intergenic 50.0%
AGGCCTCATTTCCTAGGAAC+CGG + Chr1:90979856-90979875 MsG0180005375.01.T01:intron 50.0%
ATCGTACCAGACCGATGCAT+TGG - Chr1:90981921-90981940 None:intergenic 50.0%
CAAAGCGCGTGTACCAAGTT+TGG + Chr1:90979428-90979447 MsG0180005375.01.T01:CDS 50.0%
CCTGCTTAGTTTCAACCAGC+AGG + Chr1:90979388-90979407 MsG0180005375.01.T01:five_prime_UTR 50.0%
CGCGTGTACCAAGTTTGGAA+AGG + Chr1:90979433-90979452 MsG0180005375.01.T01:CDS 50.0%
CGGGAAATGACTGTAGTCAG+CGG - Chr1:90982772-90982791 None:intergenic 50.0%
CGTCGAACACACCTAATTCG+AGG - Chr1:90981356-90981375 None:intergenic 50.0%
CTCATTTCCTAGGAACCGGA+GGG + Chr1:90979860-90979879 MsG0180005375.01.T01:intron 50.0%
CTGACTACAGTCATTTCCCG+GGG + Chr1:90982772-90982791 MsG0180005375.01.T01:CDS 50.0%
GATGCAGTGTCAAGGTCTCT+AGG + Chr1:90980347-90980366 MsG0180005375.01.T01:intron 50.0%
GCTGACTACAGTCATTTCCC+GGG + Chr1:90982771-90982790 MsG0180005375.01.T01:CDS 50.0%
GCTTAGTTTCAACCAGCAGG+AGG + Chr1:90979391-90979410 MsG0180005375.01.T01:five_prime_UTR 50.0%
GGTCAATGGCCTTCCTGTAA+AGG + Chr1:90981789-90981808 MsG0180005375.01.T01:CDS 50.0%
GTGTCCGTGCTTCATCTAAC+AGG - Chr1:90981332-90981351 None:intergenic 50.0%
GTTGGGGAGTCCATAGTCTA+GGG - Chr1:90980410-90980429 None:intergenic 50.0%
GTTTCGATCACCATTGCCCT+TGG + Chr1:90981890-90981909 MsG0180005375.01.T01:CDS 50.0%
TAGGTGCAAGTGTGCAACAG+AGG - Chr1:90980722-90980741 None:intergenic 50.0%
TCGGATTCTCCCGAATCACT+GGG - Chr1:90979763-90979782 None:intergenic 50.0%
TGATATTGGGACGGTGTGGA+AGG + Chr1:90982148-90982167 MsG0180005375.01.T01:CDS 50.0%
TGATGCTAGGCACTCGAGTT+GGG + Chr1:90983005-90983024 MsG0180005375.01.T01:CDS 50.0%
TGGTATTTGGACCTGATGCC+AGG + Chr1:90981013-90981032 MsG0180005375.01.T01:intron 50.0%
TGTTGGGGAGTCCATAGTCT+AGG - Chr1:90980411-90980430 None:intergenic 50.0%
TTGGGGAGTCCATAGTCTAG+GGG - Chr1:90980409-90980428 None:intergenic 50.0%
! AATCATCTGGTTCACGTCCC+CGG - Chr1:90982792-90982811 None:intergenic 50.0%
! CAGGGCTTTTGTTCAAGAGG+AGG + Chr1:90982738-90982757 MsG0180005375.01.T01:CDS 50.0%
! CCTGCTGGTTGAAACTAAGC+AGG - Chr1:90979391-90979410 None:intergenic 50.0%
! CGCTGACTACAGTCATTTCC+CGG + Chr1:90982770-90982789 MsG0180005375.01.T01:CDS 50.0%
!! ACCAGCAGGAGGAGTATTCA+TGG + Chr1:90979402-90979421 MsG0180005375.01.T01:exon 50.0%
!! CACTCGAGTTGGGAAAGAAG+TGG + Chr1:90983015-90983034 MsG0180005375.01.T01:CDS 50.0%
!! CATATGTGTCGGTGTCGTGT+CGG - Chr1:90981384-90981403 None:intergenic 50.0%
!! GTTTTAACCCTCCGGTTCCT+AGG - Chr1:90979870-90979889 None:intergenic 50.0%
!! TTGGGAGGGAGGTTGGTATT+TGG + Chr1:90981000-90981019 MsG0180005375.01.T01:intron 50.0%
AGCAATGCGAGCAACGAGGA+GGG - Chr1:90981846-90981865 None:intergenic 55.0%
AGCCAGCTGTAATCAGGCAC+AGG - Chr1:90979931-90979950 None:intergenic 55.0%
AGTGGGTCACCCAGTGATTC+GGG + Chr1:90979751-90979770 MsG0180005375.01.T01:intron 55.0%
ATAAGCAGGGACCTGGCATC+AGG - Chr1:90981027-90981046 None:intergenic 55.0%
ATGGAGCAATGCGAGCAACG+AGG - Chr1:90981850-90981869 None:intergenic 55.0%
CAGAGTGATAAGCAGGGACC+TGG - Chr1:90981034-90981053 None:intergenic 55.0%
CAGTGGGTCACCCAGTGATT+CGG + Chr1:90979750-90979769 MsG0180005375.01.T01:intron 55.0%
CCTCATTTCCTAGGAACCGG+AGG + Chr1:90979859-90979878 MsG0180005375.01.T01:intron 55.0%
CCTCCGGTTCCTAGGAAATG+AGG - Chr1:90979862-90979881 None:intergenic 55.0%
CTCGGATTCTCCCGAATCAC+TGG - Chr1:90979764-90979783 None:intergenic 55.0%
CTGATGCTAGGCACTCGAGT+TGG + Chr1:90983004-90983023 MsG0180005375.01.T01:CDS 55.0%
GATCACCATTGCCCTTGGGT+GGG + Chr1:90981895-90981914 MsG0180005375.01.T01:CDS 55.0%
GCAAGTGTGCAACAGAGGAG+TGG - Chr1:90980717-90980736 None:intergenic 55.0%
GCACGGACACTCCTCGAATT+AGG + Chr1:90981342-90981361 MsG0180005375.01.T01:intron 55.0%
GCCATGAATACTCCTCCTGC+TGG - Chr1:90979406-90979425 None:intergenic 55.0%
GGAGCAAGCCAGCTGTAATC+AGG - Chr1:90979937-90979956 None:intergenic 55.0%
GTGATCCGGGTATCATTCCG+AGG + Chr1:90981668-90981687 MsG0180005375.01.T01:CDS 55.0%
GTTCGTGGGAACTGAAGGCT+TGG - Chr1:90981757-90981776 None:intergenic 55.0%
TCCGATACAGAGCTGATGGC+CGG + Chr1:90982635-90982654 MsG0180005375.01.T01:CDS 55.0%
TCCGGCCATCAGCTCTGTAT+CGG - Chr1:90982639-90982658 None:intergenic 55.0%
TGCCTGTGCCTGATTACAGC+TGG + Chr1:90979926-90979945 MsG0180005375.01.T01:intron 55.0%
TGGGTGGAGATGCAGTGTCA+AGG + Chr1:90980339-90980358 MsG0180005375.01.T01:intron 55.0%
! ATCATCTGGTTCACGTCCCC+GGG - Chr1:90982791-90982810 None:intergenic 55.0%
! CGGGAATGGGCTCAAATTCC+AGG - Chr1:90980375-90980394 None:intergenic 55.0%
! TCCATAGTCTAGGGGAGTGC+CGG - Chr1:90980401-90980420 None:intergenic 55.0%
!! TGTCAAGGTCTCTAGGGTCC+TGG + Chr1:90980354-90980373 MsG0180005375.01.T01:intron 55.0%
AGGTGGAGATCGCCGTCCTA+AGG + Chr1:90982813-90982832 MsG0180005375.01.T01:CDS 60.0%
ATTGGCCCACCCAAGGGCAA+TGG - Chr1:90981903-90981922 None:intergenic 60.0%
CCTTGGGTGGGCCAATGCAT+CGG + Chr1:90981907-90981926 MsG0180005375.01.T01:CDS 60.0%
CGATCACCATTGCCCTTGGG+TGG + Chr1:90981894-90981913 MsG0180005375.01.T01:CDS 60.0%
GAGCAATGCGAGCAACGAGG+AGG - Chr1:90981847-90981866 None:intergenic 60.0%
TTTGAGCCCATTCCCGCTCC+CGG + Chr1:90980379-90980398 MsG0180005375.01.T01:intron 60.0%
! CGATGCATTGGCCCACCCAA+GGG - Chr1:90981909-90981928 None:intergenic 60.0%
!! CCATAGTCTAGGGGAGTGCC+GGG - Chr1:90980400-90980419 None:intergenic 60.0%
CCCGGCACTCCCCTAGACTA+TGG + Chr1:90980397-90980416 MsG0180005375.01.T01:intron 65.0%
! CCGATGCATTGGCCCACCCA+AGG - Chr1:90981910-90981929 None:intergenic 65.0%
! GGTGGGCCAATGCATCGGTC+TGG + Chr1:90981912-90981931 MsG0180005375.01.T01:CDS 65.0%
!! GGAGTGCCGGGAGCGGGAAT+GGG - Chr1:90980388-90980407 None:intergenic 70.0%
!! GTCTAGGGGAGTGCCGGGAG+CGG - Chr1:90980395-90980414 None:intergenic 70.0%
!! TCTAGGGGAGTGCCGGGAGC+GGG - Chr1:90980394-90980413 None:intergenic 70.0%
!! GGGAGTGCCGGGAGCGGGAA+TGG - Chr1:90980389-90980408 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 90979308 90983446 90979308 ID=MsG0180005375.01;Name=MsG0180005375.01
Chr1 mRNA 90979308 90983446 90979308 ID=MsG0180005375.01.T01;Parent=MsG0180005375.01;Name=MsG0180005375.01.T01;_AED=0.49;_eAED=0.49;_QI=113|0.66|1|1|0.66|0.75|4|321|360
Chr1 exon 90979308 90979462 90979308 ID=MsG0180005375.01.T01:exon:17549;Parent=MsG0180005375.01.T01
Chr1 exon 90981637 90981933 90981637 ID=MsG0180005375.01.T01:exon:17550;Parent=MsG0180005375.01.T01
Chr1 exon 90982044 90982280 90982044 ID=MsG0180005375.01.T01:exon:17551;Parent=MsG0180005375.01.T01
Chr1 exon 90982619 90983446 90982619 ID=MsG0180005375.01.T01:exon:17552;Parent=MsG0180005375.01.T01
Chr1 five_prime_UTR 90979308 90979420 90979308 ID=MsG0180005375.01.T01:five_prime_utr;Parent=MsG0180005375.01.T01
Chr1 CDS 90979421 90979462 90979421 ID=MsG0180005375.01.T01:cds;Parent=MsG0180005375.01.T01
Chr1 CDS 90981637 90981933 90981637 ID=MsG0180005375.01.T01:cds;Parent=MsG0180005375.01.T01
Chr1 CDS 90982044 90982280 90982044 ID=MsG0180005375.01.T01:cds;Parent=MsG0180005375.01.T01
Chr1 CDS 90982619 90983125 90982619 ID=MsG0180005375.01.T01:cds;Parent=MsG0180005375.01.T01
Chr1 three_prime_UTR 90983126 90983446 90983126 ID=MsG0180005375.01.T01:three_prime_utr;Parent=MsG0180005375.01.T01
Gene Sequence

>MsG0180005375.01.T01

ATGGCAGCAAAGCGCGTGTACCAAGTTTGGAAAGGAAGTAATGTCCTGGTGCTTCTCTGTTTTACTTCTGCACGTGATCCGGGTATCATTCCGAGGAATTCACATCCACCAGAAGAAGAGTTTCGTTATGAATCTTCTACAGTAGCCGGACAACAAACACCAAGCCTTCAGTTCCCACGAACAAAAGAAGTAATGGTCAATGGCCTTCCTGTAAAGGTGAAATATTGTGAAACTTGTATGCTGTATCGCCCTCCTCGTTGCTCGCATTGCTCCATATGCAACAACTGTGTTGAACGTTTCGATCACCATTGCCCTTGGGTGGGCCAATGCATCGGTCTGAGGAACTACCGTTACTTCTTCATGTTTGTTTCTTCGGCAACAATTCTGTGCATCTATGTGTTTTCCTTCTCAGCATTTTACATCAAGGTTCTGATGGATAATAATGATATTGGGACGGTGTGGAAGGCGATAAAAGAATCCCCTGCATCTGTGATTTTAATGGCTTATTGTTTCATCTCTTTGTGGTTTGTTGGTGGACTAACTGGTTTTCATTTGTACCTTATAAGCACAAACCAGACGACCTATGAAAACTTCCGATACAGAGCTGATGGCCGGATCAATGTTTTTAATCGAGGTTGTTTAAATAATTTTCTGGAAGTGTTTTGCACAGAAATAAAGCCCTCAAGGAACAATTTCAGGGCTTTTGTTCAAGAGGAGGTACAAAGGCCGCTGACTACAGTCATTTCCCGGGGACGTGAACCAGATGATTTAGGTGGAGATCGCCGTCCTAAGGTTGAAGATGATCTAGATATCGGTGAAGATCTATTGAAGATATCACAGCGTAGGAATATTGAGCAACTCGACGAGGACATTCAGAATAGAAGGAGCAATGGTGCGCCCCATAATACAGCTGAACCCGATTCAATTTTGTCATCAGATCATCGAGCTACCACAATACGATCTGATGCTAGGCACTCGAGTTGGGAAAGAAGTGGAAACTGGGAAATTGCACAAGATGTCTTTGCCAATTCAAATGTCACCGAAAGCAGAAACTATGTCTCATCAAAGGAAATGCGCCAATGA
Protein sequence

>MsG0180005375.01.T01

MAAKRVYQVWKGSNVLVLLCFTSARDPGIIPRNSHPPEEEFRYESSTVAGQQTPSLQFPRTKEVMVNGLPVKVKYCETCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSATILCIYVFSFSAFYIKVLMDNNDIGTVWKAIKESPASVILMAYCFISLWFVGGLTGFHLYLISTNQTTYENFRYRADGRINVFNRGCLNNFLEVFCTEIKPSRNNFRAFVQEEVQRPLTTVISRGREPDDLGGDRRPKVEDDLDIGEDLLKISQRRNIEQLDEDIQNRRSNGAPHNTAEPDSILSSDHRATTIRSDARHSSWERSGNWEIAQDVFANSNVTESRNYVSSKEMRQ*