AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005462.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005462.01.T01 MTR_1g100673 100.000 200 0 0 1 200 1 200 1.09e-150 416
MsG0180005462.01.T01 MTR_2g040570 50.467 107 46 3 7 112 17 117 1.53e-29 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005462.01.T01 AT4G25550 88.500 200 23 0 1 200 1 200 5.52e-137 381
MsG0180005462.01.T01 AT4G29820 56.995 193 83 0 6 198 28 220 8.88e-80 237

Find 94 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTATAGTTTCAAAATT+TGG 0.111915 1:+92125166 None:intergenic
TGTATTAATTCATTGGATTA+TGG 0.122098 1:-92124286 MsG0180005462.01.T01:three_prime_UTR
CATCTTACAATTCCGATATT+TGG 0.146769 1:+92124129 None:intergenic
ATCCCTTATCAACAATTTAA+AGG 0.196498 1:-92123998 MsG0180005462.01.T01:three_prime_UTR
CTAACTGACCTGACCGTAAT+TGG 0.198326 1:-92124470 MsG0180005462.01.T01:exon
CCAGTCTATGCAATGATAAT+AGG 0.209004 1:+92124367 None:intergenic
GTATTAATTCATTGGATTAT+GGG 0.265221 1:-92124285 MsG0180005462.01.T01:three_prime_UTR
ATCAATTAATTGCAGAGATA+TGG 0.293385 1:-92124549 MsG0180005462.01.T01:intron
AAGGGATTATACAATGTCTT+TGG 0.299118 1:+92124014 None:intergenic
CCCCTTTAAATTGTTGATAA+GGG 0.301469 1:+92123996 None:intergenic
CTACGAGTTGTTTCCCATCT+TGG 0.304691 1:+92124238 None:intergenic
CACTGTTTGTATTAATTCAT+TGG 0.304733 1:-92124293 MsG0180005462.01.T01:three_prime_UTR
TCCCTTATCAACAATTTAAA+GGG 0.304767 1:-92123997 MsG0180005462.01.T01:three_prime_UTR
CTGGTTAGAGAACTGAATTT+TGG 0.316649 1:-92124348 MsG0180005462.01.T01:three_prime_UTR
ACCCCTTTAAATTGTTGATA+AGG 0.323253 1:+92123995 None:intergenic
CCGAAGGTGTAGCTCGATAA+TGG 0.326177 1:+92128576 None:intergenic
TTGCTCAAGTTGCCAAATAT+CGG 0.327172 1:-92124141 MsG0180005462.01.T01:three_prime_UTR
GTTATATGAGGAGGACAGTA+TGG 0.348606 1:+92125142 None:intergenic
CATATTCTTCTTCTGCAAAT+CGG 0.351829 1:-92125522 MsG0180005462.01.T01:CDS
CCTGGCTTGAGACGGCCGCC+TGG 0.352635 1:+92125480 None:intergenic
TTTCTCCATCTTAGGCTCCT+TGG 0.355722 1:+92128551 None:intergenic
TACGAGTTGTTTCCCATCTT+GGG 0.359383 1:+92124239 None:intergenic
AGCATCTCCGCTTCCAATTA+CGG 0.376555 1:+92124457 None:intergenic
CAGTCTATGCAATGATAATA+GGG 0.391545 1:+92124368 None:intergenic
ATATTCTTCTTCTGCAAATC+GGG 0.410634 1:-92125521 MsG0180005462.01.T01:CDS
TCAACAATTTAAAGGGGTAA+TGG 0.422716 1:-92123990 MsG0180005462.01.T01:three_prime_UTR
TGAACTCTATGACAATGTTC+AGG 0.434805 1:-92124927 MsG0180005462.01.T01:intron
CTGGCTTGAGACGGCCGCCT+GGG 0.436161 1:+92125481 None:intergenic
CCTTGTTCACTTATCTGAAA+GGG 0.439725 1:-92124999 MsG0180005462.01.T01:CDS
CTAATTCTTAAAATAACAAA+TGG 0.442681 1:+92124416 None:intergenic
CCAGGCGGCCGTCTCAAGCC+AGG 0.446518 1:-92125480 MsG0180005462.01.T01:CDS
TGTAATCATACCTGCCAGTC+AGG 0.447945 1:+92125298 None:intergenic
TTGTATGTTTACAGAAATTG+AGG 0.449117 1:-92125374 MsG0180005462.01.T01:intron
CGAAGGTGTAGCTCGATAAT+GGG 0.452400 1:+92128577 None:intergenic
AGAAGAAAGAGGAGGGAGAG+AGG 0.456485 1:+92128689 None:intergenic
AGCAACAGCTTCCTAAGTAT+TGG 0.458151 1:+92124040 None:intergenic
GGAAAGTTGCTGAGGAATAG+TGG 0.461776 1:+92124515 None:intergenic
GAGAAGAAGAAGAAAGAGGA+GGG 0.463188 1:+92128682 None:intergenic
CCTATTATCATTGCATAGAC+TGG 0.475331 1:-92124367 MsG0180005462.01.T01:three_prime_UTR
TTGCGGTTATCAACCCAAGA+TGG 0.477194 1:-92124252 MsG0180005462.01.T01:three_prime_UTR
GAGGTATCTTTCTCCATCTT+AGG 0.484631 1:+92128543 None:intergenic
CAGGCGGCCGTCTCAAGCCA+GGG 0.484829 1:-92125479 MsG0180005462.01.T01:CDS
CGTCTCAAGCCAGGGGAGAA+TGG 0.493218 1:-92125471 MsG0180005462.01.T01:intron
TCCTTGTTCACTTATCTGAA+AGG 0.498741 1:-92125000 MsG0180005462.01.T01:CDS
AGAAGAGAAGAAGAAGAAAG+AGG 0.499171 1:+92128678 None:intergenic
AGAAAATTGACTAGCAAGCT+TGG 0.501691 1:-92125343 MsG0180005462.01.T01:CDS
CTTAGGCTCCTTGGTTCCGA+AGG 0.509164 1:+92128560 None:intergenic
CGGCCTTGTACCTGACTGGC+AGG 0.509791 1:-92125308 MsG0180005462.01.T01:intron
TGCCAGTCAGGTACAAGGCC+GGG 0.510170 1:+92125310 None:intergenic
CTCCGCTTCCAATTACGGTC+AGG 0.514725 1:+92124462 None:intergenic
CGGAACCAAGGAGCCTAAGA+TGG 0.520178 1:-92128556 MsG0180005462.01.T01:CDS
AACTTCAGTTATATGAAAGA+AGG 0.526771 1:-92127420 MsG0180005462.01.T01:intron
GGAATGAGGACCAGCGTGGA+AGG 0.530721 1:-92127399 MsG0180005462.01.T01:CDS
ATTTGCAGAAGAAGAATATG+AGG 0.532812 1:+92125525 None:intergenic
TAGGTGAATGTGTTGCAATC+TGG 0.534479 1:-92125195 MsG0180005462.01.T01:CDS
TGCGGTTATCAACCCAAGAT+GGG 0.538250 1:-92124251 MsG0180005462.01.T01:three_prime_UTR
AGAGAAGAAGAAGAAAGAGG+AGG 0.543586 1:+92128681 None:intergenic
TGTATGTTTACAGAAATTGA+GGG 0.552205 1:-92125373 MsG0180005462.01.T01:intron
CCCTTTCAGATAAGTGAACA+AGG 0.554396 1:+92124999 None:intergenic
CCATTATCGAGCTACACCTT+CGG 0.557502 1:-92128576 MsG0180005462.01.T01:CDS
CACCCGGCCTTGTACCTGAC+TGG 0.560733 1:-92125312 MsG0180005462.01.T01:CDS
AAGATCTTACCATTCTCCCC+TGG 0.560818 1:+92125462 None:intergenic
GAGAAAGATGATACCCTCTC+AGG 0.560955 1:-92128613 MsG0180005462.01.T01:exon
CTGCCAGTCAGGTACAAGGC+CGG 0.563251 1:+92125309 None:intergenic
GTTATATGAAAGAAGGAATG+AGG 0.564077 1:-92127413 MsG0180005462.01.T01:CDS
GACCTGACCGTAATTGGAAG+CGG 0.568885 1:-92124464 MsG0180005462.01.T01:three_prime_UTR
GGATGACTATCGCGATCCCA+TGG 0.569454 1:-92124178 MsG0180005462.01.T01:three_prime_UTR
GCGATAGTCATCCATCGTGT+TGG 0.576415 1:+92124188 None:intergenic
GGAATTGTAAGATGAGGAGA+TGG 0.579336 1:-92124120 MsG0180005462.01.T01:three_prime_UTR
ATACCTGCCAGTCAGGTACA+AGG 0.579704 1:+92125305 None:intergenic
ATTGGAAGCGGAGATGCTGA+TGG 0.582910 1:-92124452 MsG0180005462.01.T01:three_prime_UTR
CATTCTCCCCTGGCTTGAGA+CGG 0.592769 1:+92125472 None:intergenic
TCCTCATATAACAAAACCCA+AGG 0.593485 1:-92125131 MsG0180005462.01.T01:intron
CCCTTATCAACAATTTAAAG+GGG 0.597173 1:-92123996 MsG0180005462.01.T01:three_prime_UTR
AATGTGTTGCAATCTGGTGG+AGG 0.600436 1:-92125189 MsG0180005462.01.T01:CDS
TGGAATCTGGAAAGTTGCTG+AGG 0.615552 1:+92124507 None:intergenic
AATATCGGAATTGTAAGATG+AGG 0.631098 1:-92124126 MsG0180005462.01.T01:three_prime_UTR
CAAAACAGAGAAACAGACCA+TGG 0.632294 1:+92124161 None:intergenic
GTGAATGTGTTGCAATCTGG+TGG 0.633660 1:-92125192 MsG0180005462.01.T01:CDS
TATGTGTTTACTACCTGAGA+GGG 0.633947 1:+92128600 None:intergenic
AAGCTTGGTGCTAATTCACC+CGG 0.635284 1:-92125328 MsG0180005462.01.T01:CDS
AGCAAGACGATCAGCGACGG+AGG 0.638191 1:+92128524 None:intergenic
GTAAGATGAGGAGATGGACA+TGG 0.641035 1:-92124114 MsG0180005462.01.T01:three_prime_UTR
AGGCGGCCGTCTCAAGCCAG+GGG 0.645996 1:-92125478 MsG0180005462.01.T01:CDS
AAAACAGAGAAACAGACCAT+GGG 0.660317 1:+92124162 None:intergenic
CAGTAAAATTCCTTCCACGC+TGG 0.660338 1:+92127389 None:intergenic
ACGAGCAAGACGATCAGCGA+CGG 0.664522 1:+92128521 None:intergenic
GTATGTGTTTACTACCTGAG+AGG 0.672150 1:+92128599 None:intergenic
TGAGGAATAGTGGATATGAC+TGG 0.673677 1:+92124525 None:intergenic
GAGCTACACCTTCGGAACCA+AGG 0.674539 1:-92128568 MsG0180005462.01.T01:CDS
CAAGATGGGAAACAACTCGT+AGG 0.687420 1:-92124237 MsG0180005462.01.T01:three_prime_UTR
TTGTCATAGAGTTCAAACAA+TGG 0.696073 1:+92124935 None:intergenic
AGAAGGAATGAGGACCAGCG+TGG 0.707171 1:-92127403 MsG0180005462.01.T01:CDS
TGAAGTTGAAACCAACACGA+TGG 0.733835 1:-92124199 MsG0180005462.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACAAAATTCTTTATAA+TGG - Chr1:92127813-92127832 MsG0180005462.01.T01:intron 10.0%
!! CAAAAAAAAAAAAAAATCAT+AGG + Chr1:92128098-92128117 None:intergenic 10.0%
!! TACATAAACAATATATTATA+GGG + Chr1:92124362-92124381 None:intergenic 10.0%
!! TTACATAAACAATATATTAT+AGG + Chr1:92124363-92124382 None:intergenic 10.0%
!!! AATATGATAAAATTTTGTAT+TGG + Chr1:92125621-92125640 None:intergenic 10.0%
!!! ATATGATAAAATTTTGTATT+GGG + Chr1:92125620-92125639 None:intergenic 10.0%
!!! TTTTTTTCCATAAAAAAAAA+GGG + Chr1:92127957-92127976 None:intergenic 10.0%
!!! TTTTTTTTCCATAAAAAAAA+AGG + Chr1:92127958-92127977 None:intergenic 10.0%
!! AAATTCATTATATACTCAAA+TGG - Chr1:92125194-92125213 MsG0180005462.01.T01:CDS 15.0%
!! AAGATTACATCATTAAAAAA+AGG + Chr1:92125667-92125686 None:intergenic 15.0%
!! ATCGAATAAAATTAATCAAA+AGG + Chr1:92124234-92124253 None:intergenic 15.0%
!! CTAATTCTTAAAATAACAAA+TGG + Chr1:92128255-92128274 None:intergenic 15.0%
!! GTCATATAAAATGTTTATAT+TGG + Chr1:92125029-92125048 None:intergenic 15.0%
!! TACATTATAGTTTCAAAATT+TGG + Chr1:92127505-92127524 None:intergenic 15.0%
!! TCGAATAAAATTAATCAAAA+GGG + Chr1:92124233-92124252 None:intergenic 15.0%
!!! ATAAAATTACATTTGAAGTT+TGG + Chr1:92125342-92125361 None:intergenic 15.0%
!!! CATTTGTTATTTTAAGAATT+AGG - Chr1:92128253-92128272 MsG0180005462.01.T01:intron 15.0%
!!! TAAAAAGTGTAAAAACTAAA+TGG + Chr1:92126999-92127018 None:intergenic 15.0%
!!! TAAAATTACATTTGAAGTTT+GGG + Chr1:92125341-92125360 None:intergenic 15.0%
!!! TCTATAATTCTATTTTAGAT+TGG - Chr1:92126680-92126699 MsG0180005462.01.T01:intron 15.0%
!! AAGTAAAAAGATTATATGAG+AGG + Chr1:92125151-92125170 None:intergenic 20.0%
!! GTATTAATTCATTGGATTAT+GGG - Chr1:92128383-92128402 MsG0180005462.01.T01:intron 20.0%
!! TATTAGTAAAATTGGGAATT+GGG + Chr1:92124295-92124314 None:intergenic 20.0%
!! TGTATTAATTCATTGGATTA+TGG - Chr1:92128382-92128401 MsG0180005462.01.T01:intron 20.0%
!!! AAAATGTCCCTTTTTTTTTA+TGG - Chr1:92127947-92127966 MsG0180005462.01.T01:intron 20.0%
!!! AAAATTACATTTGAAGTTTG+GGG + Chr1:92125340-92125359 None:intergenic 20.0%
!!! AAATAAAGCCATATAACTTT+TGG + Chr1:92124960-92124979 None:intergenic 20.0%
!!! AACAGAAACTTTTTTTTCAA+GGG - Chr1:92127883-92127902 MsG0180005462.01.T01:intron 20.0%
!!! AATAAAGCCATATAACTTTT+GGG + Chr1:92124959-92124978 None:intergenic 20.0%
!!! AGTAGAGTATTAGTAAAATT+GGG + Chr1:92124302-92124321 None:intergenic 20.0%
!!! ATGGAAAAAAAATGTTCTTT+TGG - Chr1:92127966-92127985 MsG0180005462.01.T01:intron 20.0%
!!! CACAAATTACAAATCTTTTT+AGG + Chr1:92128354-92128373 None:intergenic 20.0%
!!! TATAATGGAGAGATTTAAAA+CGG - Chr1:92127828-92127847 MsG0180005462.01.T01:intron 20.0%
!!! TTATATTTTAGTTTGTCGAA+GGG - Chr1:92126543-92126562 MsG0180005462.01.T01:intron 20.0%
!!! TTTATATTTTAGTTTGTCGA+AGG - Chr1:92126542-92126561 MsG0180005462.01.T01:intron 20.0%
! AAAATGTGAAAAGACATAGA+TGG + Chr1:92125410-92125429 None:intergenic 25.0%
! AAACCTATAGATAAACTTTG+GGG + Chr1:92125820-92125839 None:intergenic 25.0%
! AACTTCAGTTATATGAAAGA+AGG - Chr1:92125248-92125267 MsG0180005462.01.T01:intron 25.0%
! ACAAACCTATAGATAAACTT+TGG + Chr1:92125822-92125841 None:intergenic 25.0%
! ACATCATTAAAAAAAGGTAG+AGG + Chr1:92125661-92125680 None:intergenic 25.0%
! AGATAAACTCAATGTGTATA+TGG + Chr1:92124991-92125010 None:intergenic 25.0%
! AGTTTATCTATAGGTTTGTA+CGG - Chr1:92125823-92125842 MsG0180005462.01.T01:intron 25.0%
! ATATATTAAAGTTGCATGCT+AGG + Chr1:92126146-92126165 None:intergenic 25.0%
! ATCAATTAATTGCAGAGATA+TGG - Chr1:92128119-92128138 MsG0180005462.01.T01:intron 25.0%
! ATCAATTTACCTTATTGTGA+AGG + Chr1:92126508-92126527 None:intergenic 25.0%
! ATCCCTTATCAACAATTTAA+AGG - Chr1:92128670-92128689 MsG0180005462.01.T01:five_prime_UTR 25.0%
! ATGTTCTCTACAGAAATAAT+AGG + Chr1:92127047-92127066 None:intergenic 25.0%
! ATTAGTAAAATTGGGAATTG+GGG + Chr1:92124294-92124313 None:intergenic 25.0%
! ATTATATACTCAAATGGTTC+TGG - Chr1:92125200-92125219 MsG0180005462.01.T01:intron 25.0%
! CAAACCTATAGATAAACTTT+GGG + Chr1:92125821-92125840 None:intergenic 25.0%
! CACTGTTTGTATTAATTCAT+TGG - Chr1:92128375-92128394 MsG0180005462.01.T01:intron 25.0%
! CTTCATTTATCTGAATTGAA+GGG - Chr1:92126063-92126082 MsG0180005462.01.T01:intron 25.0%
! GAAAAAAAAGTTTCTGTTGT+TGG + Chr1:92127881-92127900 None:intergenic 25.0%
! GTATTAGTAAAATTGGGAAT+TGG + Chr1:92124296-92124315 None:intergenic 25.0%
! TATACTATACCACAGTATTA+TGG + Chr1:92125967-92125986 None:intergenic 25.0%
! TATTATGGTTTAAGAACCTT+GGG + Chr1:92125952-92125971 None:intergenic 25.0%
! TATTTGCAGACTATCATATT+CGG + Chr1:92127243-92127262 None:intergenic 25.0%
! TCCCTTATCAACAATTTAAA+GGG - Chr1:92128671-92128690 MsG0180005462.01.T01:five_prime_UTR 25.0%
! TCTTCATTTATCTGAATTGA+AGG - Chr1:92126062-92126081 MsG0180005462.01.T01:intron 25.0%
! TCTTTCATATAACTGAAGTT+TGG + Chr1:92125248-92125267 None:intergenic 25.0%
! TGTATGTTTACAGAAATTGA+GGG - Chr1:92127295-92127314 MsG0180005462.01.T01:intron 25.0%
! TTCCTCTACTTCTAATTAAA+GGG - Chr1:92125535-92125554 MsG0180005462.01.T01:CDS 25.0%
! TTGTATGTTTACAGAAATTG+AGG - Chr1:92127294-92127313 MsG0180005462.01.T01:intron 25.0%
! TTTCCTCTACTTCTAATTAA+AGG - Chr1:92125534-92125553 MsG0180005462.01.T01:CDS 25.0%
!! AAATTACATTTGAAGTTTGG+GGG + Chr1:92125339-92125358 None:intergenic 25.0%
!! AGAACTTTTCATCTTATGAT+TGG - Chr1:92127997-92128016 MsG0180005462.01.T01:intron 25.0%
!! AGTTAGTGATCATTTTAAAC+TGG + Chr1:92128184-92128203 None:intergenic 25.0%
!! ATAAAGCCATATAACTTTTG+GGG + Chr1:92124958-92124977 None:intergenic 25.0%
!! ATAGGTATTCAGAAATTTTC+TGG - Chr1:92124725-92124744 MsG0180005462.01.T01:intron 25.0%
!! ATGCAATAAAGGTATATTAG+TGG - Chr1:92126316-92126335 MsG0180005462.01.T01:intron 25.0%
!! CAGTAGAGTATTAGTAAAAT+TGG + Chr1:92124303-92124322 None:intergenic 25.0%
!! CTTTGTACTTGATTTGATAT+GGG - Chr1:92124453-92124472 MsG0180005462.01.T01:three_prime_UTR 25.0%
!! GAAGAAAAATGTTAGTTTAG+AGG + Chr1:92126004-92126023 None:intergenic 25.0%
!! TGATAAAATTTTGTATTGGG+AGG + Chr1:92125617-92125636 None:intergenic 25.0%
!!! AATTACCATCATATTTTGAC+TGG + Chr1:92128066-92128085 None:intergenic 25.0%
!!! ATTCTCTTGTGTTGTTTTTT+AGG + Chr1:92124027-92124046 None:intergenic 25.0%
!!! CAACAGAAACTTTTTTTTCA+AGG - Chr1:92127882-92127901 MsG0180005462.01.T01:intron 25.0%
!!! GCTTTATGCTTTATTTTTGT+AGG - Chr1:92127103-92127122 MsG0180005462.01.T01:intron 25.0%
!!! GTTATTTTAAGAATTAGGAC+TGG - Chr1:92128258-92128277 MsG0180005462.01.T01:intron 25.0%
!!! TTAGTAATGAAGAGTTTTGA+CGG - Chr1:92126649-92126668 MsG0180005462.01.T01:intron 25.0%
!!! TTCTATTTTAGATTGGATAG+TGG - Chr1:92126687-92126706 MsG0180005462.01.T01:intron 25.0%
!!! TTCTCTTGTGTTGTTTTTTA+GGG + Chr1:92124026-92124045 None:intergenic 25.0%
!!! TTGGTCATAGATTTTAGTTT+TGG - Chr1:92128016-92128035 MsG0180005462.01.T01:intron 25.0%
AACAACAAGAGAAGTAAAAG+AGG + Chr1:92124200-92124219 None:intergenic 30.0%
AAGGGATTATACAATGTCTT+TGG + Chr1:92128657-92128676 None:intergenic 30.0%
AATAATAGGACAGGACATTA+TGG + Chr1:92127033-92127052 None:intergenic 30.0%
AATATCGGAATTGTAAGATG+AGG - Chr1:92128542-92128561 MsG0180005462.01.T01:CDS 30.0%
ACAACAAGAGAAGTAAAAGA+GGG + Chr1:92124199-92124218 None:intergenic 30.0%
ACCCCTTTAAATTGTTGATA+AGG + Chr1:92128676-92128695 None:intergenic 30.0%
ATAATAGGACAGGACATTAT+GGG + Chr1:92127032-92127051 None:intergenic 30.0%
ATATTCTTCTTCTGCAAATC+GGG - Chr1:92127147-92127166 MsG0180005462.01.T01:intron 30.0%
ATCCCTTTAATTAGAAGTAG+AGG + Chr1:92125540-92125559 None:intergenic 30.0%
ATCTAGTAATCCATTTCCTA+AGG - Chr1:92126479-92126498 MsG0180005462.01.T01:intron 30.0%
ATGATTGATGAAAGAGTAAG+AGG + Chr1:92124707-92124726 None:intergenic 30.0%
ATTTGCAGAAGAAGAATATG+AGG + Chr1:92127146-92127165 None:intergenic 30.0%
CAAGAAACTAAATCTCTTGA+TGG + Chr1:92124832-92124851 None:intergenic 30.0%
CAGAGATAATAATGCTACAA+TGG + Chr1:92125720-92125739 None:intergenic 30.0%
CAGTCTATGCAATGATAATA+GGG + Chr1:92128303-92128322 None:intergenic 30.0%
CATATTCTTCTTCTGCAAAT+CGG - Chr1:92127146-92127165 MsG0180005462.01.T01:intron 30.0%
CATCTTACAATTCCGATATT+TGG + Chr1:92128542-92128561 None:intergenic 30.0%
CCATATCAAATCAAGTACAA+AGG + Chr1:92124455-92124474 None:intergenic 30.0%
CCCTTATCAACAATTTAAAG+GGG - Chr1:92128672-92128691 MsG0180005462.01.T01:five_prime_UTR 30.0%
CTAACCAAAACAACAACTAA+TGG + Chr1:92126633-92126652 None:intergenic 30.0%
CTTACTCTTTCATCAATCAT+AGG - Chr1:92124707-92124726 MsG0180005462.01.T01:intron 30.0%
GAAATGTGTTAGACAAATCA+AGG - Chr1:92124601-92124620 MsG0180005462.01.T01:intron 30.0%
GTAGGCATATCCTTAAAAAA+GGG + Chr1:92126863-92126882 None:intergenic 30.0%
GTATTATGGTTTAAGAACCT+TGG + Chr1:92125953-92125972 None:intergenic 30.0%
GTTATATGAAAGAAGGAATG+AGG - Chr1:92125255-92125274 MsG0180005462.01.T01:intron 30.0%
GTTCTTAAACCATAATACTG+TGG - Chr1:92125955-92125974 MsG0180005462.01.T01:intron 30.0%
TCAACAATTTAAAGGGGTAA+TGG - Chr1:92128678-92128697 MsG0180005462.01.T01:five_prime_UTR 30.0%
TCCACTAACTACTATTAATG+CGG + Chr1:92126278-92126297 None:intergenic 30.0%
TCCATTAATATCTTCTATGC+AGG - Chr1:92127630-92127649 MsG0180005462.01.T01:intron 30.0%
TCCTGCATAGAAGATATTAA+TGG + Chr1:92127634-92127653 None:intergenic 30.0%
TGATTGATGAAAGAGTAAGA+GGG + Chr1:92124706-92124725 None:intergenic 30.0%
TGCATTCTGTATACTGTATT+TGG - Chr1:92126037-92126056 MsG0180005462.01.T01:intron 30.0%
TGTACAAATGGATAGATAGA+GGG + Chr1:92125923-92125942 None:intergenic 30.0%
TGTAGGCATATCCTTAAAAA+AGG + Chr1:92126864-92126883 None:intergenic 30.0%
TGTTGATCTTACTTTCTTGT+TGG - Chr1:92125743-92125762 MsG0180005462.01.T01:intron 30.0%
TTAAACCATCAAGAAAGAAC+TGG + Chr1:92125505-92125524 None:intergenic 30.0%
TTCAAGCTTAGAAAAAACTG+TGG - Chr1:92124678-92124697 MsG0180005462.01.T01:intron 30.0%
TTGTACAAATGGATAGATAG+AGG + Chr1:92125924-92125943 None:intergenic 30.0%
TTGTCATAGAGTTCAAACAA+TGG + Chr1:92127736-92127755 None:intergenic 30.0%
! AAAGTACCCCAAAAGTTATA+TGG - Chr1:92124949-92124968 MsG0180005462.01.T01:CDS 30.0%
! AAATGTTAGTTTAGAGGTGA+AGG + Chr1:92125998-92126017 None:intergenic 30.0%
! AATTACATTTGAAGTTTGGG+GGG + Chr1:92125338-92125357 None:intergenic 30.0%
! AATTTTATTCGATCGCTTCT+GGG - Chr1:92124241-92124260 MsG0180005462.01.T01:three_prime_UTR 30.0%
! ATATCATCGAAACAGGTTTT+AGG + Chr1:92124650-92124669 None:intergenic 30.0%
! ATTTTGCGTATCCAATACTT+AGG - Chr1:92128617-92128636 MsG0180005462.01.T01:exon 30.0%
! CCCCTTTAAATTGTTGATAA+GGG + Chr1:92128675-92128694 None:intergenic 30.0%
! CCTTTGTACTTGATTTGATA+TGG - Chr1:92124452-92124471 MsG0180005462.01.T01:three_prime_UTR 30.0%
! CTAACGATTTTCATGTGTTT+TGG + Chr1:92125059-92125078 None:intergenic 30.0%
! CTATGTCTTTTCACATTTTG+CGG - Chr1:92125411-92125430 MsG0180005462.01.T01:intron 30.0%
! GATAATTTGTCTTGTAGACA+TGG - Chr1:92125092-92125111 MsG0180005462.01.T01:intron 30.0%
! GATCATTTTAAACTGGAATC+TGG + Chr1:92128177-92128196 None:intergenic 30.0%
! TAATTTTATTCGATCGCTTC+TGG - Chr1:92124240-92124259 MsG0180005462.01.T01:three_prime_UTR 30.0%
! TATCATCGAAACAGGTTTTA+GGG + Chr1:92124649-92124668 None:intergenic 30.0%
!!! ACAGTTTTTTCTAAGCTTGA+AGG + Chr1:92124679-92124698 None:intergenic 30.0%
!!! TTATGGGTTTTGATTTGTTG+CGG - Chr1:92128399-92128418 MsG0180005462.01.T01:intron 30.0%
AAAACAGAGAAACAGACCAT+GGG + Chr1:92128509-92128528 None:intergenic 35.0%
AAAAGTTTCTGTTGTTGGTC+AGG + Chr1:92127876-92127895 None:intergenic 35.0%
AACAGAAGTTGTGTTAGAAG+TGG + Chr1:92124895-92124914 None:intergenic 35.0%
AAGTTTAGCATGAAACTGGT+CGG + Chr1:92126969-92126988 None:intergenic 35.0%
AATCTCTTGATGGAAGTTTG+AGG + Chr1:92124822-92124841 None:intergenic 35.0%
AATGAATTTGAGCATCACAC+AGG + Chr1:92125183-92125202 None:intergenic 35.0%
ACAGAAGTTGTGTTAGAAGT+GGG + Chr1:92124894-92124913 None:intergenic 35.0%
AGAAAATTGACTAGCAAGCT+TGG - Chr1:92127325-92127344 MsG0180005462.01.T01:intron 35.0%
AGAAGAGAAGAAGAAGAAAG+AGG + Chr1:92123993-92124012 None:intergenic 35.0%
AGACACATAATATGAGACAG+AGG - Chr1:92126410-92126429 MsG0180005462.01.T01:intron 35.0%
AGTGTAAAAACTAAATGGCC+AGG + Chr1:92126994-92127013 None:intergenic 35.0%
ATAATGCTACAATGGATGAG+TGG + Chr1:92125712-92125731 None:intergenic 35.0%
ATTCCCATCACAAATTACCT+TGG + Chr1:92127557-92127576 None:intergenic 35.0%
ATTTATCTGAATTGAAGGGC+TGG - Chr1:92126067-92126086 MsG0180005462.01.T01:intron 35.0%
CATTTGGATCGGTTAAATGA+AGG + Chr1:92124533-92124552 None:intergenic 35.0%
CATTTGTACAATTTGACCCA+AGG - Chr1:92125933-92125952 MsG0180005462.01.T01:intron 35.0%
CCACTAACTACTATTAATGC+GGG + Chr1:92126277-92126296 None:intergenic 35.0%
CCAGTCTATGCAATGATAAT+AGG + Chr1:92128304-92128323 None:intergenic 35.0%
CCTATTATCATTGCATAGAC+TGG - Chr1:92128301-92128320 MsG0180005462.01.T01:intron 35.0%
CCTTGTTCACTTATCTGAAA+GGG - Chr1:92127669-92127688 MsG0180005462.01.T01:intron 35.0%
CGGAATTTATGGAGCAAATA+TGG - Chr1:92126573-92126592 MsG0180005462.01.T01:intron 35.0%
CTAAGGTAACCTTCACAATA+AGG - Chr1:92126496-92126515 MsG0180005462.01.T01:intron 35.0%
CTCTACAGAAATAATAGGAC+AGG + Chr1:92127042-92127061 None:intergenic 35.0%
CTTATTGTGAAGGTTACCTT+AGG + Chr1:92126498-92126517 None:intergenic 35.0%
CTTGGGTCAAATTGTACAAA+TGG + Chr1:92125935-92125954 None:intergenic 35.0%
GACACATAATATGAGACAGA+GGG - Chr1:92126411-92126430 MsG0180005462.01.T01:intron 35.0%
TAAAGCATAAAGCTGAGACA+TGG + Chr1:92127096-92127115 None:intergenic 35.0%
TAACTCCAGTTCTTTCTTGA+TGG - Chr1:92125497-92125516 MsG0180005462.01.T01:CDS 35.0%
TAAGCATACACCAATAGAAC+TGG + Chr1:92127605-92127624 None:intergenic 35.0%
TATGTGTTTACTACCTGAGA+GGG + Chr1:92124071-92124090 None:intergenic 35.0%
TCCTCATATAACAAAACCCA+AGG - Chr1:92127537-92127556 MsG0180005462.01.T01:intron 35.0%
TCCTTGTTCACTTATCTGAA+AGG - Chr1:92127668-92127687 MsG0180005462.01.T01:intron 35.0%
TCTATGACAATGTTCAGGTA+CGG - Chr1:92127746-92127765 MsG0180005462.01.T01:intron 35.0%
TCTTGTATTGCCAGTTCTAT+TGG - Chr1:92127592-92127611 MsG0180005462.01.T01:intron 35.0%
TGAACTCTATGACAATGTTC+AGG - Chr1:92127741-92127760 MsG0180005462.01.T01:intron 35.0%
TGCAAGCATCTCATTTAAGT+TGG - Chr1:92126182-92126201 MsG0180005462.01.T01:intron 35.0%
TTCCCATCACAAATTACCTT+GGG + Chr1:92127556-92127575 None:intergenic 35.0%
TTGCCCCAAAGTTTATCTAT+AGG - Chr1:92125814-92125833 MsG0180005462.01.T01:intron 35.0%
! AAACCCAAGGTAATTTGTGA+TGG - Chr1:92127550-92127569 MsG0180005462.01.T01:intron 35.0%
! AACCCAAGGTAATTTGTGAT+GGG - Chr1:92127551-92127570 MsG0180005462.01.T01:intron 35.0%
! ATATCCTTAAAAAAGGGCGT+GGG + Chr1:92126857-92126876 None:intergenic 35.0%
! CTGGTTAGAGAACTGAATTT+TGG - Chr1:92128320-92128339 MsG0180005462.01.T01:intron 35.0%
! GCAAGCATCTCATTTAAGTT+GGG - Chr1:92126183-92126202 MsG0180005462.01.T01:intron 35.0%
! TAAAGGGGAGTTTTCCATTA+TGG + Chr1:92126939-92126958 None:intergenic 35.0%
! TCATATGTGTTGTTGCTGTT+AGG - Chr1:92124557-92124576 MsG0180005462.01.T01:intron 35.0%
! TTCAATGAAGCAGCTAGTTT+AGG - Chr1:92124749-92124768 MsG0180005462.01.T01:intron 35.0%
! TTGCTCAAGTTGCCAAATAT+CGG - Chr1:92128527-92128546 MsG0180005462.01.T01:CDS 35.0%
! TTTTCACATTTTGCGGAATC+AGG - Chr1:92125418-92125437 MsG0180005462.01.T01:intron 35.0%
!! AAATGGATTACTAGATGTGC+TGG + Chr1:92126475-92126494 None:intergenic 35.0%
!! AATGAAGAGTTTTGACGGTA+TGG - Chr1:92126654-92126673 MsG0180005462.01.T01:intron 35.0%
!! ATGAAGAGTTTTGACGGTAT+GGG - Chr1:92126655-92126674 MsG0180005462.01.T01:intron 35.0%
!!! ACCTTGGGTTTTGTTATATG+AGG + Chr1:92127541-92127560 None:intergenic 35.0%
!!! AGCAAGCAGTTTCAAGTTTT+TGG + Chr1:92127710-92127729 None:intergenic 35.0%
!!! GCAAGCAGTTTCAAGTTTTT+GGG + Chr1:92127709-92127728 None:intergenic 35.0%
!!! GTTTTTTCTAAGCTTGAAGG+AGG + Chr1:92124676-92124695 None:intergenic 35.0%
!!! TTGGCCATTAGTTGTTGTTT+TGG - Chr1:92126626-92126645 MsG0180005462.01.T01:intron 35.0%
!!! TTGGGTTTTGTTATATGAGG+AGG + Chr1:92127538-92127557 None:intergenic 35.0%
AACAACTAATGGCCAATCGT+CGG + Chr1:92126622-92126641 None:intergenic 40.0%
AAGACTCTCCCTCTCAAAAT+GGG + Chr1:92126772-92126791 None:intergenic 40.0%
AAGTTGTGTTAGAAGTGGGA+TGG + Chr1:92124890-92124909 None:intergenic 40.0%
ACAATGTTCAGGTACGGTTA+CGG - Chr1:92127752-92127771 MsG0180005462.01.T01:intron 40.0%
ACCCACAAGTTTGAATCCTA+TGG - Chr1:92125888-92125907 MsG0180005462.01.T01:intron 40.0%
AGAGAAGAAGAAGAAAGAGG+AGG + Chr1:92123990-92124009 None:intergenic 40.0%
AGCAACAGCTTCCTAAGTAT+TGG + Chr1:92128631-92128650 None:intergenic 40.0%
AGCCATAGGATTCAAACTTG+TGG + Chr1:92125893-92125912 None:intergenic 40.0%
AGTTAGTGGAGTAGTTAGCT+GGG - Chr1:92126288-92126307 MsG0180005462.01.T01:intron 40.0%
AGTTTAGCATGAAACTGGTC+GGG + Chr1:92126968-92126987 None:intergenic 40.0%
CAAAACAGAGAAACAGACCA+TGG + Chr1:92128510-92128529 None:intergenic 40.0%
CAAACTTGTGGGTGAAATAG+AGG + Chr1:92125881-92125900 None:intergenic 40.0%
CAACACATATGAGCAGCATT+TGG + Chr1:92124549-92124568 None:intergenic 40.0%
CATATCCTTAAAAAAGGGCG+TGG + Chr1:92126858-92126877 None:intergenic 40.0%
CATATGAGCAGCATTTGGAT+CGG + Chr1:92124544-92124563 None:intergenic 40.0%
CCCGCATTAATAGTAGTTAG+TGG - Chr1:92126274-92126293 MsG0180005462.01.T01:intron 40.0%
CCCTTTCAGATAAGTGAACA+AGG + Chr1:92127672-92127691 None:intergenic 40.0%
CTTGATGGAAGTTTGAGGAA+CGG + Chr1:92124817-92124836 None:intergenic 40.0%
GACATAGATGGTTGTGTATC+AGG + Chr1:92125398-92125417 None:intergenic 40.0%
GAGAAGAAGAAGAAAGAGGA+GGG + Chr1:92123989-92124008 None:intergenic 40.0%
GCCATAGGATTCAAACTTGT+GGG + Chr1:92125892-92125911 None:intergenic 40.0%
GCTTGCAGTAAAATTCTACG+AGG - Chr1:92126595-92126614 MsG0180005462.01.T01:intron 40.0%
GCTTGCCAGTCAAAATATGA+TGG - Chr1:92128058-92128077 MsG0180005462.01.T01:intron 40.0%
GGAATTGTAAGATGAGGAGA+TGG - Chr1:92128548-92128567 MsG0180005462.01.T01:CDS 40.0%
GGACAAGTTTAGCATGAAAC+TGG + Chr1:92126973-92126992 None:intergenic 40.0%
GTATGTGTTTACTACCTGAG+AGG + Chr1:92124072-92124091 None:intergenic 40.0%
GTGAAGGTTACCTTAGGAAA+TGG + Chr1:92126492-92126511 None:intergenic 40.0%
GTGGTCACACTAGACAAAAT+AGG + Chr1:92125693-92125712 None:intergenic 40.0%
GTTATATGAGGAGGACAGTA+TGG + Chr1:92127529-92127548 None:intergenic 40.0%
GTTTCATGCTAAACTTGTCC+TGG - Chr1:92126973-92126992 MsG0180005462.01.T01:intron 40.0%
TAGGTGAATGTGTTGCAATC+TGG - Chr1:92127473-92127492 MsG0180005462.01.T01:intron 40.0%
TAGTTAGTGGAGTAGTTAGC+TGG - Chr1:92126287-92126306 MsG0180005462.01.T01:intron 40.0%
TGAAGTTGAAACCAACACGA+TGG - Chr1:92128469-92128488 MsG0180005462.01.T01:intron 40.0%
TGTTTGCATGCACTTATCCT+TGG - Chr1:92127439-92127458 MsG0180005462.01.T01:intron 40.0%
TTAAAGTTGCATGCTAGGAG+AGG + Chr1:92126141-92126160 None:intergenic 40.0%
! AACACATTTTGCAAACTCCC+AGG - Chr1:92127170-92127189 MsG0180005462.01.T01:intron 40.0%
! AACTGGTCGGGTTTGTTTAA+AGG + Chr1:92126956-92126975 None:intergenic 40.0%
! ACTAAGGCTCCCATTGTTTT+GGG + Chr1:92126821-92126840 None:intergenic 40.0%
! ACTGGTCGGGTTTGTTTAAA+GGG + Chr1:92126955-92126974 None:intergenic 40.0%
! AGAAGCATGTGTAGCTCATA+TGG + Chr1:92125568-92125587 None:intergenic 40.0%
! ATTGGGAATTGGGGTTTTCT+AGG + Chr1:92124285-92124304 None:intergenic 40.0%
! CAGAATGCAAGTTTTGCAAG+AGG + Chr1:92126026-92126045 None:intergenic 40.0%
! GAGGTATCTTTCTCCATCTT+AGG + Chr1:92124128-92124147 None:intergenic 40.0%
! GGTTTCAACTTCAGCTTTTC+AGG + Chr1:92128462-92128481 None:intergenic 40.0%
! TACGAGTTGTTTCCCATCTT+GGG + Chr1:92128432-92128451 None:intergenic 40.0%
! TACTAAGGCTCCCATTGTTT+TGG + Chr1:92126822-92126841 None:intergenic 40.0%
! TTGGGAATTGGGGTTTTCTA+GGG + Chr1:92124284-92124303 None:intergenic 40.0%
!! TGAGGAATAGTGGATATGAC+TGG + Chr1:92128146-92128165 None:intergenic 40.0%
!!! TGGGGTTTTCTAGGGTTTTA+GGG + Chr1:92124276-92124295 None:intergenic 40.0%
!!! TTGGGGTTTTCTAGGGTTTT+AGG + Chr1:92124277-92124296 None:intergenic 40.0%
AAGATCTTACCATTCTCCCC+TGG + Chr1:92127209-92127228 None:intergenic 45.0%
AAGTTTGAGGAACGGCAACT+GGG + Chr1:92124809-92124828 None:intergenic 45.0%
AATGGGCGGCACAATACATA+AGG + Chr1:92126755-92126774 None:intergenic 45.0%
AATGTGTTGCAATCTGGTGG+AGG - Chr1:92127479-92127498 MsG0180005462.01.T01:intron 45.0%
ACAACTAATGGCCAATCGTC+GGG + Chr1:92126621-92126640 None:intergenic 45.0%
AGCATCTCCGCTTCCAATTA+CGG + Chr1:92128214-92128233 None:intergenic 45.0%
AGTGATAGCAAAACCAGCCA+TGG + Chr1:92124782-92124801 None:intergenic 45.0%
ATACACAGAATCTCGAGGGA+AGG + Chr1:92127071-92127090 None:intergenic 45.0%
ATCCTTGGCATCTTGCAGAT+AGG - Chr1:92127454-92127473 MsG0180005462.01.T01:intron 45.0%
CAAGACTCTCCCTCTCAAAA+TGG + Chr1:92126773-92126792 None:intergenic 45.0%
CAAGATGGGAAACAACTCGT+AGG - Chr1:92128431-92128450 MsG0180005462.01.T01:intron 45.0%
CAGTAAAATTCCTTCCACGC+TGG + Chr1:92125282-92125301 None:intergenic 45.0%
CCATTATCGAGCTACACCTT+CGG - Chr1:92124092-92124111 MsG0180005462.01.T01:three_prime_UTR 45.0%
CTAACTGACCTGACCGTAAT+TGG - Chr1:92128198-92128217 MsG0180005462.01.T01:intron 45.0%
CTAGTTTAGGCGTTTAGCCA+TGG - Chr1:92124762-92124781 MsG0180005462.01.T01:intron 45.0%
GAGAAAGATGATACCCTCTC+AGG - Chr1:92124055-92124074 MsG0180005462.01.T01:three_prime_UTR 45.0%
GAGGACGATATCATCGAAAC+AGG + Chr1:92124657-92124676 None:intergenic 45.0%
GCTGGGTTGCAATGCAATAA+AGG - Chr1:92126305-92126324 MsG0180005462.01.T01:intron 45.0%
GGAAAGTTGCTGAGGAATAG+TGG + Chr1:92128156-92128175 None:intergenic 45.0%
GGCAATACACAGAATCTCGA+GGG + Chr1:92127075-92127094 None:intergenic 45.0%
GTAAGATGAGGAGATGGACA+TGG - Chr1:92128554-92128573 MsG0180005462.01.T01:CDS 45.0%
GTGAATGTGTTGCAATCTGG+TGG - Chr1:92127476-92127495 MsG0180005462.01.T01:intron 45.0%
TGCGGTTATCAACCCAAGAT+GGG - Chr1:92128417-92128436 MsG0180005462.01.T01:intron 45.0%
TGGAATCTGGAAAGTTGCTG+AGG + Chr1:92128164-92128183 None:intergenic 45.0%
TGGCAATACACAGAATCTCG+AGG + Chr1:92127076-92127095 None:intergenic 45.0%
TGTAATCATACCTGCCAGTC+AGG + Chr1:92127373-92127392 None:intergenic 45.0%
TGTGTTAGAAGTGGGATGGT+TGG + Chr1:92124886-92124905 None:intergenic 45.0%
TTGCGGTTATCAACCCAAGA+TGG - Chr1:92128416-92128435 MsG0180005462.01.T01:intron 45.0%
TTTCTCCATCTTAGGCTCCT+TGG + Chr1:92124120-92124139 None:intergenic 45.0%
TTTGAGCATCACACAGGACA+AGG + Chr1:92125177-92125196 None:intergenic 45.0%
! ACATTTGAAGTTTGGGGGGA+GGG + Chr1:92125334-92125353 None:intergenic 45.0%
! ACATTTTGCAAACTCCCAGG+CGG - Chr1:92127173-92127192 MsG0180005462.01.T01:intron 45.0%
! AGGGGAGTTTTCCATTATGG+CGG + Chr1:92126936-92126955 None:intergenic 45.0%
! CAGCGTGGAAGGAATTTTAC+TGG - Chr1:92125280-92125299 MsG0180005462.01.T01:intron 45.0%
! CGAAGGTGTAGCTCGATAAT+GGG + Chr1:92124094-92124113 None:intergenic 45.0%
! CTACGAGTTGTTTCCCATCT+TGG + Chr1:92128433-92128452 None:intergenic 45.0%
! CTGGTCGGGTTTGTTTAAAG+GGG + Chr1:92126954-92126973 None:intergenic 45.0%
! TACATTTGAAGTTTGGGGGG+AGG + Chr1:92125335-92125354 None:intergenic 45.0%
!! AAGCTTGGTGCTAATTCACC+CGG - Chr1:92127340-92127359 MsG0180005462.01.T01:intron 45.0%
!! CATTTTGAGAGGGAGAGTCT+TGG - Chr1:92126771-92126790 MsG0180005462.01.T01:intron 45.0%
ACATAAGGCTCTCGCTACTG+AGG + Chr1:92126740-92126759 None:intergenic 50.0%
ACTCTCCCTCTCAAAATGGG+CGG + Chr1:92126769-92126788 None:intergenic 50.0%
AGAAGAAAGAGGAGGGAGAG+AGG + Chr1:92123982-92124001 None:intergenic 50.0%
AGGGAGCTGTGCGGAATTTA+TGG - Chr1:92126562-92126581 MsG0180005462.01.T01:intron 50.0%
ATACCTGCCAGTCAGGTACA+AGG + Chr1:92127366-92127385 None:intergenic 50.0%
ATTGGAAGCGGAGATGCTGA+TGG - Chr1:92128216-92128235 MsG0180005462.01.T01:intron 50.0%
CACCTATCTGCAAGATGCCA+AGG + Chr1:92127459-92127478 None:intergenic 50.0%
GAAGTTTGAGGAACGGCAAC+TGG + Chr1:92124810-92124829 None:intergenic 50.0%
GACCTGACCGTAATTGGAAG+CGG - Chr1:92128204-92128223 MsG0180005462.01.T01:intron 50.0%
GCCTACAGAATCCAGTTGCA+CGG - Chr1:92126877-92126896 MsG0180005462.01.T01:intron 50.0%
GCGATAGTCATCCATCGTGT+TGG + Chr1:92128483-92128502 None:intergenic 50.0%
GGGAGGGTAGTCAAGTACTA+AGG + Chr1:92126837-92126856 None:intergenic 50.0%
TAGAGGGAGATGTCAGCCAT+AGG + Chr1:92125907-92125926 None:intergenic 50.0%
TCCGTGCAACTGGATTCTGT+AGG + Chr1:92126881-92126900 None:intergenic 50.0%
TGAGGTTTGGGGAGGGTTAA+AGG + Chr1:92126722-92126741 None:intergenic 50.0%
TGGGAGGCTTGAGCATATGT+GGG + Chr1:92125601-92125620 None:intergenic 50.0%
TTAGAAGTGGGATGGTTGGC+TGG + Chr1:92124882-92124901 None:intergenic 50.0%
TTCCCCCAGCCCAAAACAAT+GGG - Chr1:92126809-92126828 MsG0180005462.01.T01:intron 50.0%
TTGGGAGGCTTGAGCATATG+TGG + Chr1:92125602-92125621 None:intergenic 50.0%
TTTAGGCGTTTAGCCATGGC+TGG - Chr1:92124766-92124785 MsG0180005462.01.T01:intron 50.0%
! ATGGTTGGCTGGCTATCTAG+GGG + Chr1:92124871-92124890 None:intergenic 50.0%
! ATTGTGCCGCCCATTTTGAG+AGG - Chr1:92126760-92126779 MsG0180005462.01.T01:intron 50.0%
! CATTTGAAGTTTGGGGGGAG+GGG + Chr1:92125333-92125352 None:intergenic 50.0%
! CCGAAGGTGTAGCTCGATAA+TGG + Chr1:92124095-92124114 None:intergenic 50.0%
! CCTTAAAAAAGGGCGTGGGA+GGG + Chr1:92126853-92126872 None:intergenic 50.0%
! GATGGTTGGCTGGCTATCTA+GGG + Chr1:92124872-92124891 None:intergenic 50.0%
! TCCTTAAAAAAGGGCGTGGG+AGG + Chr1:92126854-92126873 None:intergenic 50.0%
!! TTGTGCCGCCCATTTTGAGA+GGG - Chr1:92126761-92126780 MsG0180005462.01.T01:intron 50.0%
ACGAGCAAGACGATCAGCGA+CGG + Chr1:92124150-92124169 None:intergenic 55.0%
AGAAGGAATGAGGACCAGCG+TGG - Chr1:92125265-92125284 MsG0180005462.01.T01:intron 55.0%
AGGCTCTCGCTACTGAGGTT+TGG + Chr1:92126735-92126754 None:intergenic 55.0%
ATTCTACGAGGCCCGACGAT+TGG - Chr1:92126607-92126626 MsG0180005462.01.T01:intron 55.0%
CGGAACCAAGGAGCCTAAGA+TGG - Chr1:92124112-92124131 MsG0180005462.01.T01:three_prime_UTR 55.0%
CTCCGCTTCCAATTACGGTC+AGG + Chr1:92128209-92128228 None:intergenic 55.0%
CTTAGGCTCCTTGGTTCCGA+AGG + Chr1:92124111-92124130 None:intergenic 55.0%
CTTCCCCCAGCCCAAAACAA+TGG - Chr1:92126808-92126827 MsG0180005462.01.T01:intron 55.0%
GAGCTACACCTTCGGAACCA+AGG - Chr1:92124100-92124119 MsG0180005462.01.T01:three_prime_UTR 55.0%
GCTCTCGCTACTGAGGTTTG+GGG + Chr1:92126733-92126752 None:intergenic 55.0%
GGATGACTATCGCGATCCCA+TGG - Chr1:92128490-92128509 MsG0180005462.01.T01:intron 55.0%
GGCTCTCGCTACTGAGGTTT+GGG + Chr1:92126734-92126753 None:intergenic 55.0%
GGGAGGCTTGAGCATATGTG+GGG + Chr1:92125600-92125619 None:intergenic 55.0%
GTTGCATGCTAGGAGAGGAC+TGG + Chr1:92126136-92126155 None:intergenic 55.0%
GTTTGTCGAAGGGAGCTGTG+CGG - Chr1:92126553-92126572 MsG0180005462.01.T01:intron 55.0%
TCGCTACTGAGGTTTGGGGA+GGG + Chr1:92126729-92126748 None:intergenic 55.0%
TGTTCTGGTCTCCGTGCAAC+TGG + Chr1:92126891-92126910 None:intergenic 55.0%
! CATTCTCCCCTGGCTTGAGA+CGG + Chr1:92127199-92127218 None:intergenic 55.0%
! GGATGGTTGGCTGGCTATCT+AGG + Chr1:92124873-92124892 None:intergenic 55.0%
!!! AGGCTCCCATTGTTTTGGGC+TGG + Chr1:92126817-92126836 None:intergenic 55.0%
!!! CCCTCCCACGCCCTTTTTTA+AGG - Chr1:92126850-92126869 MsG0180005462.01.T01:intron 55.0%
!!! CTCCCATTGTTTTGGGCTGG+GGG + Chr1:92126814-92126833 None:intergenic 55.0%
!!! GCTCCCATTGTTTTGGGCTG+GGG + Chr1:92126815-92126834 None:intergenic 55.0%
!!! GGCTCCCATTGTTTTGGGCT+GGG + Chr1:92126816-92126835 None:intergenic 55.0%
ACCAGAACAGCCCCACCTGT+TGG - Chr1:92126902-92126921 MsG0180005462.01.T01:intron 60.0%
AGCAAGACGATCAGCGACGG+AGG + Chr1:92124147-92124166 None:intergenic 60.0%
CCAGAACAGCCCCACCTGTT+GGG - Chr1:92126903-92126922 MsG0180005462.01.T01:intron 60.0%
CGTCTCAAGCCAGGGGAGAA+TGG - Chr1:92127197-92127216 MsG0180005462.01.T01:intron 60.0%
CTCGCTACTGAGGTTTGGGG+AGG + Chr1:92126730-92126749 None:intergenic 60.0%
CTGCCAGTCAGGTACAAGGC+CGG + Chr1:92127362-92127381 None:intergenic 60.0%
GGAATGAGGACCAGCGTGGA+AGG - Chr1:92125269-92125288 MsG0180005462.01.T01:intron 60.0%
TGCCAGTCAGGTACAAGGCC+GGG + Chr1:92127361-92127380 None:intergenic 60.0%
TGGGAGTGGGTCCGCCATAA+TGG - Chr1:92126922-92126941 MsG0180005462.01.T01:intron 60.0%
ACAGCCCCACCTGTTGGGAG+TGG - Chr1:92126908-92126927 MsG0180005462.01.T01:intron 65.0%
CAGCCCCACCTGTTGGGAGT+GGG - Chr1:92126909-92126928 MsG0180005462.01.T01:intron 65.0%
CCCAACAGGTGGGGCTGTTC+TGG + Chr1:92126906-92126925 None:intergenic 65.0%
CGGACCCACTCCCAACAGGT+GGG + Chr1:92126916-92126935 None:intergenic 65.0%
GGACCCACTCCCAACAGGTG+GGG + Chr1:92126915-92126934 None:intergenic 65.0%
! CACCCGGCCTTGTACCTGAC+TGG - Chr1:92127356-92127375 MsG0180005462.01.T01:intron 65.0%
! CGGCCTTGTACCTGACTGGC+AGG - Chr1:92127360-92127379 MsG0180005462.01.T01:intron 65.0%
!! ATGGCGGACCCACTCCCAAC+AGG + Chr1:92126920-92126939 None:intergenic 65.0%
AGGCGGCCGTCTCAAGCCAG+GGG - Chr1:92127190-92127209 MsG0180005462.01.T01:intron 70.0%
CAGGCGGCCGTCTCAAGCCA+GGG - Chr1:92127189-92127208 MsG0180005462.01.T01:intron 70.0%
GCGGACCCACTCCCAACAGG+TGG + Chr1:92126917-92126936 None:intergenic 70.0%
! CTGGCTTGAGACGGCCGCCT+GGG + Chr1:92127190-92127209 None:intergenic 70.0%
CCAGGCGGCCGTCTCAAGCC+AGG - Chr1:92127188-92127207 MsG0180005462.01.T01:intron 75.0%
! CCTGGCTTGAGACGGCCGCC+TGG + Chr1:92127191-92127210 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 92123923 92128767 92123923 ID=MsG0180005462.01;Name=MsG0180005462.01
Chr1 mRNA 92123923 92128767 92123923 ID=MsG0180005462.01.T01;Parent=MsG0180005462.01;Name=MsG0180005462.01.T01;_AED=0.37;_eAED=0.37;_QI=139|1|1|1|0.5|0.42|7|562|200
Chr1 exon 92123923 92124556 92123923 ID=MsG0180005462.01.T01:exon:18977;Parent=MsG0180005462.01.T01
Chr1 exon 92124928 92125038 92124928 ID=MsG0180005462.01.T01:exon:18976;Parent=MsG0180005462.01.T01
Chr1 exon 92125132 92125218 92125132 ID=MsG0180005462.01.T01:exon:18975;Parent=MsG0180005462.01.T01
Chr1 exon 92125309 92125382 92125309 ID=MsG0180005462.01.T01:exon:18974;Parent=MsG0180005462.01.T01
Chr1 exon 92125472 92125565 92125472 ID=MsG0180005462.01.T01:exon:18973;Parent=MsG0180005462.01.T01
Chr1 exon 92127389 92127434 92127389 ID=MsG0180005462.01.T01:exon:18972;Parent=MsG0180005462.01.T01
Chr1 exon 92128510 92128767 92128510 ID=MsG0180005462.01.T01:exon:18971;Parent=MsG0180005462.01.T01
Chr1 five_prime_UTR 92128629 92128767 92128629 ID=MsG0180005462.01.T01:five_prime_utr;Parent=MsG0180005462.01.T01
Chr1 CDS 92128510 92128628 92128510 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 CDS 92127389 92127434 92127389 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 CDS 92125472 92125565 92125472 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 CDS 92125309 92125382 92125309 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 CDS 92125132 92125218 92125132 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 CDS 92124928 92125038 92124928 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 CDS 92124485 92124556 92124485 ID=MsG0180005462.01.T01:cds;Parent=MsG0180005462.01.T01
Chr1 three_prime_UTR 92123923 92124484 92123923 ID=MsG0180005462.01.T01:three_prime_utr;Parent=MsG0180005462.01.T01
Gene Sequence

>MsG0180005462.01.T01

ATGATACCCTCTCAGGTAGTAAACACATACCCATTATCGAGCTACACCTTCGGAACCAAGGAGCCTAAGATGGAGAAAGATACCTCCGTCGCTGATCGTCTTGCTCGTATGAAAGTCAATTATATGAAAGAAGGAATGAGGACCAGCGTGGAAGGAATTTTACTGGTACAAGAACACAATCATCCTCATATTCTTCTTCTGCAAATCGGGAACACATTTTGCAAACTCCCAGGCGGCCGTCTCAAGCCAGGGGAGAATGAAATTGAGGGCTTGAAGAGAAAATTGACTAGCAAGCTTGGTGCTAATTCACCCGGCCTTGTACCTGACTGGCAGATAGGTGAATGTGTTGCAATCTGGTGGAGGCCAAATTTTGAAACTATAATGTATCCATACTGTCCTCCTCATATAACAAAACCCAAGGAGTGCAAGAAGCTTTTCCTTGTTCACTTATCTGAAAGGGAATACTTTGCTGTACCCAAAAACTTGAAACTGCTTGCTGTTCCATTGTTTGAACTCTATGACAATGTTCAGAGATATGGACCAGTCATATCCACTATTCCTCAGCAACTTTCCAGATTCCAGTTTAAAATGATCACTAACTGA
Protein sequence

>MsG0180005462.01.T01

MIPSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPGLVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFKMITN*