Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005496.01.T01 | XP_004494541.1 | 93.284 | 134 | 9 | 0 | 72 | 205 | 60 | 193 | 4.41E-85 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005496.01.T01 | O04834 | 89.552 | 134 | 14 | 0 | 72 | 205 | 60 | 193 | 1.59E-85 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005496.01.T01 | A0A1S2XW14 | 93.284 | 134 | 9 | 0 | 72 | 205 | 60 | 193 | 2.11e-85 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002282.01 | MsG0180005496.01 | 0.833021 | 6.775691e-56 | 7.706633e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005496.01.T01 | MTR_7g112090 | 93.284 | 134 | 9 | 0 | 72 | 205 | 60 | 193 | 6.65e-89 | 259 |
| MsG0180005496.01.T01 | MTR_2g034640 | 88.806 | 134 | 15 | 0 | 72 | 205 | 60 | 193 | 1.73e-86 | 253 |
| MsG0180005496.01.T01 | MTR_4g121860 | 85.821 | 134 | 19 | 0 | 72 | 205 | 60 | 193 | 8.50e-85 | 249 |
| MsG0180005496.01.T01 | MTR_4g062160 | 86.667 | 60 | 8 | 0 | 1 | 60 | 31 | 90 | 5.83e-32 | 112 |
| MsG0180005496.01.T01 | MTR_6g055240 | 82.759 | 58 | 10 | 0 | 1 | 58 | 2 | 59 | 1.19e-30 | 107 |
| MsG0180005496.01.T01 | MTR_1g086360 | 81.967 | 61 | 11 | 0 | 1 | 61 | 31 | 91 | 3.00e-30 | 107 |
| MsG0180005496.01.T01 | MTR_2g086940 | 81.667 | 60 | 11 | 0 | 1 | 60 | 17 | 76 | 3.16e-30 | 107 |
| MsG0180005496.01.T01 | MTR_2g018720 | 78.333 | 60 | 13 | 0 | 1 | 60 | 2 | 61 | 9.02e-29 | 103 |
| MsG0180005496.01.T01 | MTR_5g067450 | 81.034 | 58 | 11 | 0 | 4 | 61 | 19 | 76 | 8.24e-28 | 101 |
| MsG0180005496.01.T01 | MTR_2g089630 | 75.410 | 61 | 15 | 0 | 1 | 61 | 11 | 71 | 1.24e-25 | 95.5 |
| MsG0180005496.01.T01 | MTR_2g045000 | 75.439 | 57 | 14 | 0 | 1 | 57 | 20 | 76 | 8.82e-24 | 92.4 |
| MsG0180005496.01.T01 | MTR_2g038370 | 75.000 | 56 | 14 | 0 | 1 | 56 | 20 | 75 | 1.00e-22 | 88.2 |
| MsG0180005496.01.T01 | MTR_3g064410 | 84.091 | 44 | 7 | 0 | 19 | 62 | 1 | 44 | 7.26e-21 | 82.4 |
| MsG0180005496.01.T01 | MTR_7g078750 | 82.979 | 47 | 8 | 0 | 14 | 60 | 1 | 47 | 1.00e-20 | 82.4 |
| MsG0180005496.01.T01 | MTR_1g084680 | 71.930 | 57 | 15 | 1 | 1 | 56 | 12 | 68 | 1.66e-20 | 82.0 |
| MsG0180005496.01.T01 | MTR_2g013390 | 86.047 | 43 | 6 | 0 | 19 | 61 | 1 | 43 | 1.92e-20 | 81.3 |
| MsG0180005496.01.T01 | MTR_8g037710 | 74.000 | 50 | 13 | 0 | 1 | 50 | 14 | 63 | 2.20e-20 | 81.3 |
| MsG0180005496.01.T01 | MTR_2g096390 | 83.721 | 43 | 7 | 0 | 19 | 61 | 1 | 43 | 6.25e-20 | 80.1 |
| MsG0180005496.01.T01 | MTR_7g118370 | 86.842 | 38 | 5 | 0 | 19 | 56 | 1 | 38 | 1.70e-19 | 78.6 |
| MsG0180005496.01.T01 | MTR_3g011900 | 83.721 | 43 | 7 | 0 | 19 | 61 | 1 | 43 | 6.70e-19 | 77.4 |
| MsG0180005496.01.T01 | MTR_2g010170 | 80.000 | 45 | 9 | 0 | 19 | 63 | 1 | 45 | 1.22e-18 | 76.3 |
| MsG0180005496.01.T01 | MTR_5g074460 | 86.047 | 43 | 6 | 0 | 19 | 61 | 1 | 43 | 1.36e-18 | 76.6 |
| MsG0180005496.01.T01 | MTR_4g057350 | 77.273 | 44 | 10 | 0 | 19 | 62 | 1 | 44 | 8.31e-18 | 74.3 |
| MsG0180005496.01.T01 | MTR_4g064190 | 75.000 | 48 | 12 | 0 | 14 | 61 | 1 | 48 | 1.89e-17 | 73.9 |
| MsG0180005496.01.T01 | MTR_0722s0030 | 88.889 | 36 | 4 | 0 | 19 | 54 | 1 | 36 | 2.38e-17 | 73.2 |
| MsG0180005496.01.T01 | MTR_7g066950 | 82.500 | 40 | 7 | 0 | 22 | 61 | 52 | 91 | 4.91e-17 | 73.9 |
| MsG0180005496.01.T01 | MTR_5g067710 | 79.070 | 43 | 9 | 0 | 19 | 61 | 1 | 43 | 5.35e-17 | 72.4 |
| MsG0180005496.01.T01 | MTR_2g019000 | 73.333 | 45 | 12 | 0 | 1 | 45 | 20 | 64 | 5.58e-17 | 72.8 |
| MsG0180005496.01.T01 | MTR_4g026950 | 40.659 | 91 | 54 | 0 | 74 | 164 | 43 | 133 | 5.63e-17 | 75.1 |
| MsG0180005496.01.T01 | MTR_5g078090 | 32.692 | 156 | 82 | 2 | 8 | 163 | 19 | 151 | 6.33e-17 | 75.5 |
| MsG0180005496.01.T01 | MTR_5g009710 | 79.070 | 43 | 9 | 0 | 1 | 43 | 22 | 64 | 7.13e-17 | 72.0 |
| MsG0180005496.01.T01 | MTR_1g007930 | 76.744 | 43 | 10 | 0 | 19 | 61 | 1 | 43 | 1.05e-16 | 71.6 |
| MsG0180005496.01.T01 | MTR_2g081920 | 80.000 | 45 | 6 | 1 | 19 | 60 | 1 | 45 | 2.80e-16 | 70.9 |
| MsG0180005496.01.T01 | MTR_3g080950 | 71.429 | 49 | 11 | 1 | 18 | 63 | 2 | 50 | 3.37e-16 | 70.1 |
| MsG0180005496.01.T01 | MTR_2g028540 | 79.070 | 43 | 9 | 0 | 19 | 61 | 1 | 43 | 3.73e-16 | 70.1 |
| MsG0180005496.01.T01 | MTR_5g009950 | 74.468 | 47 | 9 | 1 | 17 | 60 | 1 | 47 | 6.40e-16 | 69.7 |
| MsG0180005496.01.T01 | MTR_7g115540 | 66.000 | 50 | 14 | 1 | 19 | 68 | 1 | 47 | 9.59e-16 | 69.3 |
| MsG0180005496.01.T01 | MTR_6g465210 | 47.059 | 85 | 35 | 2 | 19 | 100 | 1 | 78 | 1.11e-15 | 69.7 |
| MsG0180005496.01.T01 | MTR_3g095940 | 50.000 | 80 | 35 | 2 | 9 | 88 | 46 | 120 | 1.46e-15 | 71.2 |
| MsG0180005496.01.T01 | MTR_5g015370 | 41.758 | 91 | 53 | 0 | 74 | 164 | 62 | 152 | 1.83e-15 | 71.6 |
| MsG0180005496.01.T01 | MTR_4g021590 | 77.273 | 44 | 10 | 0 | 18 | 61 | 2 | 45 | 2.03e-15 | 68.6 |
| MsG0180005496.01.T01 | MTR_8g077540 | 30.827 | 133 | 81 | 1 | 72 | 204 | 56 | 177 | 2.44e-15 | 71.2 |
| MsG0180005496.01.T01 | MTR_8g077540 | 30.827 | 133 | 81 | 1 | 72 | 204 | 82 | 203 | 2.99e-15 | 71.6 |
| MsG0180005496.01.T01 | MTR_2g060750 | 78.571 | 42 | 9 | 0 | 19 | 60 | 1 | 42 | 4.96e-15 | 67.4 |
| MsG0180005496.01.T01 | MTR_2g045300 | 52.542 | 59 | 28 | 0 | 8 | 66 | 12 | 70 | 7.54e-15 | 67.0 |
| MsG0180005496.01.T01 | MTR_7g107370 | 72.093 | 43 | 12 | 0 | 19 | 61 | 1 | 43 | 1.02e-14 | 66.6 |
| MsG0180005496.01.T01 | MTR_1294s0010 | 75.610 | 41 | 10 | 0 | 19 | 59 | 1 | 41 | 2.86e-14 | 66.6 |
| MsG0180005496.01.T01 | MTR_7g060830 | 72.340 | 47 | 10 | 1 | 17 | 60 | 1 | 47 | 2.94e-14 | 65.5 |
| MsG0180005496.01.T01 | MTR_6g035325 | 72.727 | 44 | 12 | 0 | 19 | 62 | 1 | 44 | 3.95e-14 | 65.1 |
| MsG0180005496.01.T01 | MTR_2g022200 | 38.554 | 83 | 51 | 0 | 81 | 163 | 73 | 155 | 5.26e-14 | 68.2 |
| MsG0180005496.01.T01 | MTR_4g128910 | 26.875 | 160 | 104 | 2 | 47 | 205 | 31 | 178 | 6.37e-14 | 67.4 |
| MsG0180005496.01.T01 | MTR_4g081320 | 64.815 | 54 | 14 | 2 | 10 | 58 | 57 | 110 | 1.29e-13 | 65.1 |
| MsG0180005496.01.T01 | MTR_7g021200 | 75.000 | 44 | 8 | 1 | 19 | 59 | 1 | 44 | 1.46e-13 | 64.7 |
| MsG0180005496.01.T01 | MTR_5g016540 | 27.966 | 118 | 72 | 1 | 46 | 163 | 44 | 148 | 1.51e-13 | 66.6 |
| MsG0180005496.01.T01 | MTR_7g005490 | 68.182 | 44 | 14 | 0 | 19 | 62 | 1 | 44 | 1.95e-13 | 63.2 |
| MsG0180005496.01.T01 | MTR_5g066470 | 68.750 | 48 | 12 | 1 | 17 | 61 | 1 | 48 | 2.49e-13 | 63.2 |
| MsG0180005496.01.T01 | MTR_8g027800 | 76.316 | 38 | 9 | 0 | 19 | 56 | 1 | 38 | 1.13e-12 | 61.2 |
| MsG0180005496.01.T01 | MTR_2g084130 | 70.213 | 47 | 11 | 1 | 17 | 60 | 1 | 47 | 1.49e-12 | 60.8 |
| MsG0180005496.01.T01 | MTR_4g078355 | 68.000 | 50 | 12 | 2 | 19 | 64 | 1 | 50 | 1.79e-12 | 60.1 |
| MsG0180005496.01.T01 | MTR_3g074430 | 78.947 | 38 | 8 | 0 | 19 | 56 | 1 | 38 | 1.81e-12 | 60.8 |
| MsG0180005496.01.T01 | MTR_7g093970 | 79.412 | 34 | 7 | 0 | 1 | 34 | 29 | 62 | 2.19e-12 | 60.1 |
| MsG0180005496.01.T01 | MTR_3g105500 | 74.419 | 43 | 11 | 0 | 19 | 61 | 1 | 43 | 2.82e-12 | 60.1 |
| MsG0180005496.01.T01 | MTR_0121s0030 | 76.190 | 42 | 7 | 1 | 19 | 57 | 1 | 42 | 3.10e-12 | 61.2 |
| MsG0180005496.01.T01 | MTR_7g028610 | 70.213 | 47 | 11 | 1 | 18 | 61 | 2 | 48 | 3.18e-12 | 59.7 |
| MsG0180005496.01.T01 | MTR_8g464470 | 73.171 | 41 | 8 | 1 | 19 | 56 | 3 | 43 | 3.57e-12 | 59.7 |
| MsG0180005496.01.T01 | MTR_4g134330 | 75.000 | 40 | 8 | 1 | 19 | 56 | 1 | 40 | 3.68e-12 | 60.8 |
| MsG0180005496.01.T01 | MTR_3g105940 | 65.306 | 49 | 14 | 1 | 17 | 62 | 1 | 49 | 6.64e-12 | 59.3 |
| MsG0180005496.01.T01 | MTR_7g109960 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 7.91e-12 | 61.6 |
| MsG0180005496.01.T01 | MTR_6g005820 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 8.32e-12 | 61.6 |
| MsG0180005496.01.T01 | MTR_5g034130 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 8.41e-12 | 61.6 |
| MsG0180005496.01.T01 | MTR_5g034125 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 8.41e-12 | 61.6 |
| MsG0180005496.01.T01 | MTR_1g086480 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.03e-12 | 61.6 |
| MsG0180005496.01.T01 | MTR_1g101287 | 69.767 | 43 | 10 | 1 | 19 | 58 | 1 | 43 | 9.79e-12 | 58.2 |
| MsG0180005496.01.T01 | MTR_5g007810 | 26.316 | 133 | 86 | 1 | 73 | 205 | 58 | 178 | 1.00e-11 | 61.6 |
| MsG0180005496.01.T01 | MTR_4g077640 | 27.344 | 128 | 81 | 1 | 78 | 205 | 63 | 178 | 1.65e-11 | 61.2 |
| MsG0180005496.01.T01 | MTR_5g064830 | 70.732 | 41 | 12 | 0 | 19 | 59 | 1 | 41 | 3.09e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005496.01.T01 | AT4G02080 | 89.552 | 134 | 14 | 0 | 72 | 205 | 60 | 193 | 1.62e-86 | 253 |
| MsG0180005496.01.T01 | AT3G62560 | 87.218 | 133 | 17 | 0 | 72 | 204 | 60 | 192 | 4.40e-84 | 247 |
| MsG0180005496.01.T01 | AT1G56330 | 84.962 | 133 | 20 | 0 | 72 | 204 | 60 | 192 | 3.61e-82 | 243 |
| MsG0180005496.01.T01 | AT1G09180 | 80.597 | 134 | 26 | 0 | 72 | 205 | 60 | 193 | 3.32e-77 | 230 |
| MsG0180005496.01.T01 | AT1G02620 | 82.883 | 111 | 19 | 0 | 95 | 205 | 12 | 122 | 3.16e-66 | 199 |
| MsG0180005496.01.T01 | AT3G49870 | 45.055 | 91 | 50 | 0 | 74 | 164 | 43 | 133 | 2.61e-19 | 81.3 |
| MsG0180005496.01.T01 | AT3G49870 | 33.758 | 157 | 81 | 2 | 8 | 164 | 19 | 152 | 5.03e-19 | 81.3 |
| MsG0180005496.01.T01 | AT5G67560 | 45.055 | 91 | 50 | 0 | 74 | 164 | 62 | 152 | 8.51e-19 | 80.5 |
| MsG0180005496.01.T01 | AT3G49860 | 39.640 | 111 | 58 | 1 | 64 | 165 | 35 | 145 | 1.40e-17 | 77.0 |
| MsG0180005496.01.T01 | AT5G37680 | 32.484 | 157 | 83 | 2 | 8 | 164 | 19 | 152 | 2.91e-17 | 76.6 |
| MsG0180005496.01.T01 | AT5G37680 | 40.659 | 91 | 54 | 0 | 74 | 164 | 15 | 105 | 3.63e-17 | 75.1 |
| MsG0180005496.01.T01 | AT2G18390 | 31.818 | 132 | 79 | 1 | 73 | 204 | 57 | 177 | 2.24e-16 | 74.3 |
| MsG0180005496.01.T01 | AT2G24765 | 27.500 | 160 | 103 | 2 | 47 | 205 | 31 | 178 | 7.63e-14 | 67.4 |
| MsG0180005496.01.T01 | AT5G52210 | 37.349 | 83 | 52 | 0 | 81 | 163 | 73 | 155 | 8.31e-13 | 65.1 |
| MsG0180005496.01.T01 | AT5G52210 | 37.349 | 83 | 52 | 0 | 81 | 163 | 73 | 155 | 8.31e-13 | 65.1 |
| MsG0180005496.01.T01 | AT5G14670 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 8.81e-12 | 61.6 |
| MsG0180005496.01.T01 | AT5G14670 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 8.81e-12 | 61.6 |
| MsG0180005496.01.T01 | AT5G14670 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.18e-12 | 61.6 |
| MsG0180005496.01.T01 | AT2G47170 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.36e-12 | 61.6 |
| MsG0180005496.01.T01 | AT2G47170 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.36e-12 | 61.6 |
| MsG0180005496.01.T01 | AT2G47170 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.36e-12 | 61.6 |
| MsG0180005496.01.T01 | AT3G62290 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.46e-12 | 61.6 |
| MsG0180005496.01.T01 | AT3G62290 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.46e-12 | 61.6 |
| MsG0180005496.01.T01 | AT3G62290 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 9.46e-12 | 61.6 |
| MsG0180005496.01.T01 | AT1G10630 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G10630 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G23490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT1G70490 | 26.271 | 118 | 74 | 1 | 46 | 163 | 44 | 148 | 1.02e-11 | 61.6 |
| MsG0180005496.01.T01 | AT2G15310 | 24.528 | 159 | 95 | 2 | 46 | 204 | 44 | 177 | 1.73e-11 | 61.2 |
| MsG0180005496.01.T01 | AT5G17060 | 30.526 | 95 | 66 | 0 | 73 | 167 | 58 | 152 | 6.68e-11 | 59.7 |
| MsG0180005496.01.T01 | AT5G17060 | 30.526 | 95 | 66 | 0 | 73 | 167 | 58 | 152 | 6.68e-11 | 59.7 |
Find 50 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGGAGACATGGATATTC+TGG | 0.281741 | 1:+92503291 | MsG0180005496.01.T01:CDS |
| GAACATCAGATTAAAGCTTT+TGG | 0.288297 | 1:+92504779 | MsG0180005496.01.T01:CDS |
| GTGCAGTATTGTGAAGAAAA+TGG | 0.290748 | 1:+92505908 | MsG0180005496.01.T01:CDS |
| AGACGAATTGCGTTACCATT+TGG | 0.332275 | 1:+92505809 | MsG0180005496.01.T01:CDS |
| GTTATGGTGATGGTTTCATA+TGG | 0.337418 | 1:+92505931 | MsG0180005496.01.T01:CDS |
| TCTCCTTTCTGATGAATCAT+TGG | 0.342855 | 1:+92505728 | MsG0180005496.01.T01:CDS |
| GACGAATTGCGTTACCATTT+GGG | 0.348316 | 1:+92505810 | MsG0180005496.01.T01:CDS |
| ATCAGATTGCTCGTAGAGTA+TGG | 0.358368 | 1:+92504837 | MsG0180005496.01.T01:CDS |
| CAGATTGCTCGTAGAGTATT+GGG | 0.372906 | 1:+92504757 | MsG0180005496.01.T01:intron |
| AAGACACCAAAGTCATTGAT+TGG | 0.393332 | 1:-92503257 | None:intergenic |
| TTGTTTCTGTACTTATGAAT+TGG | 0.402013 | 1:+92506019 | MsG0180005496.01.T01:three_prime_UTR |
| AATGTCCCTTTCCTTGTCCT+TGG | 0.407599 | 1:+92505753 | MsG0180005496.01.T01:CDS |
| CTCCTTTCTGATGAATCATT+GGG | 0.412647 | 1:+92505729 | MsG0180005496.01.T01:CDS |
| TGTCTTCAACGTTGCAGATC+CGG | 0.415811 | 1:+92503274 | MsG0180005496.01.T01:CDS |
| TCGTCTTCTGAGGCAGCATA+TGG | 0.429799 | 1:-92505792 | None:intergenic |
| TTCTTTAGTAAGAGATGGCT+TGG | 0.431594 | 1:+92505977 | MsG0180005496.01.T01:three_prime_UTR |
| TTATGGTGATGGTTTCATAT+GGG | 0.455567 | 1:+92505932 | MsG0180005496.01.T01:CDS |
| TCAGATTGCTCGTAGAGTAT+TGG | 0.472838 | 1:+92504756 | MsG0180005496.01.T01:intron |
| TTATGAATTGGAAGTGTTGT+TGG | 0.489479 | 1:+92506031 | MsG0180005496.01.T01:three_prime_UTR |
| TAGAGTTCTTTAGTAAGAGA+TGG | 0.491654 | 1:+92505972 | MsG0180005496.01.T01:exon |
| GTCATTGATTGGATCTGCAC+TGG | 0.492382 | 1:-92503246 | None:intergenic |
| GGCTTGAGCAACTTCACCAC+TGG | 0.494395 | 1:+92505831 | MsG0180005496.01.T01:CDS |
| TGCAGTATTGTGAAGAAAAT+GGG | 0.501905 | 1:+92505909 | MsG0180005496.01.T01:CDS |
| ATGGGTCGGACATTTGAGTC+TGG | 0.503815 | 1:-92505873 | None:intergenic |
| TGAAGTTGCTCAAGCCCAAA+TGG | 0.508916 | 1:-92505824 | None:intergenic |
| CTCCAGAATATCCATGTCTC+CGG | 0.514069 | 1:-92503293 | None:intergenic |
| TGTTTCCAAGGACAAGGAAA+GGG | 0.516162 | 1:-92505758 | None:intergenic |
| CTTTGTTAATGCTTATGACA+AGG | 0.518875 | 1:+92505671 | MsG0180005496.01.T01:CDS |
| GCAGATCCAATCAATGACTT+TGG | 0.521192 | 1:+92503251 | MsG0180005496.01.T01:CDS |
| TCCATGTTAATAGCATAAAA+CGG | 0.521338 | 1:-92503354 | None:intergenic |
| TTCCCAATGATTCATCAGAA+AGG | 0.526650 | 1:-92505731 | None:intergenic |
| CTTCACCACTGGCAAGGGTA+AGG | 0.533342 | 1:+92505842 | MsG0180005496.01.T01:CDS |
| TTGTTTCCAAGGACAAGGAA+AGG | 0.535849 | 1:-92505759 | None:intergenic |
| AAGAAAATGGGTTATGGTGA+TGG | 0.542914 | 1:+92505921 | MsG0180005496.01.T01:CDS |
| GAGCAACTTCACCACTGGCA+AGG | 0.556603 | 1:+92505836 | MsG0180005496.01.T01:CDS |
| AGCAACTTCACCACTGGCAA+GGG | 0.561923 | 1:+92505837 | MsG0180005496.01.T01:CDS |
| ATTGTGAAGAAAATGGGTTA+TGG | 0.564263 | 1:+92505915 | MsG0180005496.01.T01:CDS |
| ATGGAAAGATTACTATGCCC+AGG | 0.572618 | 1:+92504856 | MsG0180005496.01.T01:CDS |
| AGACTCAAATGTCCGACCCA+TGG | 0.577020 | 1:+92505875 | MsG0180005496.01.T01:CDS |
| ACGTTGCAGATCCGGAGACA+TGG | 0.579906 | 1:+92503282 | MsG0180005496.01.T01:CDS |
| TTTAATTCTATAAAATGACT+GGG | 0.586086 | 1:+92506093 | MsG0180005496.01.T01:three_prime_UTR |
| ATGGATATAGTCATATGTGT+AGG | 0.592742 | 1:+92503318 | MsG0180005496.01.T01:CDS |
| ACTGCACATGAATACCTCCA+TGG | 0.596081 | 1:-92505892 | None:intergenic |
| ACATGGATATTCTGGAGACA+TGG | 0.599031 | 1:+92503299 | MsG0180005496.01.T01:CDS |
| CTGCACATGAATACCTCCAT+GGG | 0.601771 | 1:-92505891 | None:intergenic |
| ATTTACCTTACCCTTGCCAG+TGG | 0.623563 | 1:-92505847 | None:intergenic |
| GTAACGCAATTCGTCTTCTG+AGG | 0.630635 | 1:-92505802 | None:intergenic |
| TGCAATGCAGGTAGATGCAG+TGG | 0.654691 | 1:+92505644 | MsG0180005496.01.T01:intron |
| CTCAAATGTCCGACCCATGG+AGG | 0.662910 | 1:+92505878 | MsG0180005496.01.T01:CDS |
| ACATGAATACCTCCATGGGT+CGG | 0.682919 | 1:-92505887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAACAAATGA+CGG | + | Chr1:92503869-92503888 | MsG0180005496.01.T01:intron | 10.0% |
| !!! | AAATGTTTTATTATGATATA+TGG | + | Chr1:92504632-92504651 | MsG0180005496.01.T01:intron | 10.0% |
| !! | AATTACTACTAAATAAAATG+CGG | - | Chr1:92503714-92503733 | None:intergenic | 15.0% |
| !! | ATATAGAGTTATTATATGTT+TGG | + | Chr1:92503761-92503780 | MsG0180005496.01.T01:intron | 15.0% |
| !! | ATATCTTAATCATGAAAATT+TGG | + | Chr1:92504936-92504955 | MsG0180005496.01.T01:intron | 15.0% |
| !! | GTTGATTAAAAATTCTAATT+TGG | - | Chr1:92503787-92503806 | None:intergenic | 15.0% |
| !! | TTTAATTCTATAAAATGACT+GGG | + | Chr1:92506093-92506112 | MsG0180005496.01.T01:three_prime_UTR | 15.0% |
| !!! | TAAGTTGTAAATTGATTTAA+CGG | - | Chr1:92505376-92505395 | None:intergenic | 15.0% |
| !!! | TATGATATTTAGCTTTATTA+TGG | - | Chr1:92503607-92503626 | None:intergenic | 15.0% |
| !!! | TTTTAATTCTATAAAATGAC+TGG | + | Chr1:92506092-92506111 | MsG0180005496.01.T01:three_prime_UTR | 15.0% |
| !! | AAAACTCAAAATGAGATTTA+GGG | - | Chr1:92504396-92504415 | None:intergenic | 20.0% |
| !!! | AAGTTTAAAGCTTTTGATTT+GGG | + | Chr1:92504809-92504828 | MsG0180005496.01.T01:CDS | 20.0% |
| !!! | ATGCCTTAAATACTTTTTTA+TGG | + | Chr1:92504892-92504911 | MsG0180005496.01.T01:intron | 20.0% |
| !!! | GGTACACTATTTTTTTTTTT+TGG | - | Chr1:92503541-92503560 | None:intergenic | 20.0% |
| !!! | TAGCCATAAAAAAGTATTTA+AGG | - | Chr1:92504898-92504917 | None:intergenic | 20.0% |
| ! | AAACAACATCAAATGTTGAT+TGG | + | Chr1:92504054-92504073 | MsG0180005496.01.T01:intron | 25.0% |
| ! | AAGATTTGATGAGTCAAAAA+AGG | + | Chr1:92505695-92505714 | MsG0180005496.01.T01:CDS | 25.0% |
| ! | ATACAATGGATAGAATAGAA+GGG | - | Chr1:92505322-92505341 | None:intergenic | 25.0% |
| ! | ATTATATTATGTCTTGGACT+TGG | + | Chr1:92504979-92504998 | MsG0180005496.01.T01:intron | 25.0% |
| ! | CAAAACTCAAAATGAGATTT+AGG | - | Chr1:92504397-92504416 | None:intergenic | 25.0% |
| ! | GATTAAGATATTCTTTCACT+TGG | - | Chr1:92504927-92504946 | None:intergenic | 25.0% |
| ! | TATACAATGGATAGAATAGA+AGG | - | Chr1:92505323-92505342 | None:intergenic | 25.0% |
| ! | TCATATAAAACTCAAGTGAA+TGG | + | Chr1:92503733-92503752 | MsG0180005496.01.T01:intron | 25.0% |
| ! | TCCAAGACATAATATAATCA+GGG | - | Chr1:92504977-92504996 | None:intergenic | 25.0% |
| ! | TCCATGTTAATAGCATAAAA+CGG | - | Chr1:92503357-92503376 | None:intergenic | 25.0% |
| ! | TCTCAGTTAAATATTGAACA+GGG | - | Chr1:92505449-92505468 | None:intergenic | 25.0% |
| ! | TTATATGCTACTGTATACAA+TGG | - | Chr1:92505336-92505355 | None:intergenic | 25.0% |
| ! | TTCTCAGTTAAATATTGAAC+AGG | - | Chr1:92505450-92505469 | None:intergenic | 25.0% |
| ! | TTTCATTAAAATATTCCAGC+AGG | - | Chr1:92504222-92504241 | None:intergenic | 25.0% |
| !! | AACATCAGATTAAAGCTTTT+GGG | + | Chr1:92504780-92504799 | MsG0180005496.01.T01:CDS | 25.0% |
| !! | CTATATTTGAAATCACTAAC+TGG | - | Chr1:92505059-92505078 | None:intergenic | 25.0% |
| !! | TAGATTCATTTTCAACTGAA+AGG | + | Chr1:92504583-92504602 | MsG0180005496.01.T01:intron | 25.0% |
| !! | TTCATTTTCCTTTATTGATC+TGG | + | Chr1:92504549-92504568 | MsG0180005496.01.T01:intron | 25.0% |
| !!! | AGTTTAAAGCTTTTGATTTG+GGG | + | Chr1:92504810-92504829 | MsG0180005496.01.T01:CDS | 25.0% |
| !!! | CAAGTTTAAAGCTTTTGATT+TGG | + | Chr1:92504808-92504827 | MsG0180005496.01.T01:CDS | 25.0% |
| !!! | GAATATCAATTTTGTTTCCA+AGG | - | Chr1:92505773-92505792 | None:intergenic | 25.0% |
| !!! | TAGCGGTACATTTTTTTTTT+AGG | - | Chr1:92503510-92503529 | None:intergenic | 25.0% |
| !!! | TCCATGTTTCAATTTTAGTA+GGG | - | Chr1:92504333-92504352 | None:intergenic | 25.0% |
| !!! | TCTGAGTTAGTTTTTGATTT+GGG | + | Chr1:92504727-92504746 | MsG0180005496.01.T01:intron | 25.0% |
| !!! | TTCTGAGTTAGTTTTTGATT+TGG | + | Chr1:92504726-92504745 | MsG0180005496.01.T01:intron | 25.0% |
| !!! | TTGTTTCTGTACTTATGAAT+TGG | + | Chr1:92506019-92506038 | MsG0180005496.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGGAAAGATGTTAG+CGG | - | Chr1:92503527-92503546 | None:intergenic | 25.0% |
| !!! | TTTTTTTTAGGATGTTAGAG+AGG | - | Chr1:92503498-92503517 | None:intergenic | 25.0% |
| AAAGAGTTGTGCATATTTAG+TGG | + | Chr1:92504153-92504172 | MsG0180005496.01.T01:intron | 30.0% | |
| AAGAAGAATGTTAAGCATGA+AGG | - | Chr1:92504430-92504449 | None:intergenic | 30.0% | |
| AATGAAATGAACTGTGTGAT+TGG | - | Chr1:92503896-92503915 | None:intergenic | 30.0% | |
| AGACATAATATAATCAGGGA+AGG | - | Chr1:92504973-92504992 | None:intergenic | 30.0% | |
| AGATTCTAAGCCAATATCTT+AGG | - | Chr1:92505087-92505106 | None:intergenic | 30.0% | |
| AGTACCTTATAAGACATTTC+TGG | + | Chr1:92505518-92505537 | MsG0180005496.01.T01:intron | 30.0% | |
| ATGGATATAGTCATATGTGT+AGG | + | Chr1:92503318-92503337 | MsG0180005496.01.T01:CDS | 30.0% | |
| CCATTTACAATGGTGAAAAA+CGG | + | Chr1:92504108-92504127 | MsG0180005496.01.T01:intron | 30.0% | |
| CTAAAAGCAATAGAGTGAAA+AGG | - | Chr1:92505500-92505519 | None:intergenic | 30.0% | |
| CTATAACTCCAGATCAATAA+AGG | - | Chr1:92504560-92504579 | None:intergenic | 30.0% | |
| CTATGATTGTGTTTCCATTA+TGG | - | Chr1:92505157-92505176 | None:intergenic | 30.0% | |
| CTTTGTTAATGCTTATGACA+AGG | + | Chr1:92505671-92505690 | MsG0180005496.01.T01:CDS | 30.0% | |
| GTCCAAGACATAATATAATC+AGG | - | Chr1:92504978-92504997 | None:intergenic | 30.0% | |
| TAACTGAGAAACAAACTTGA+TGG | + | Chr1:92505414-92505433 | MsG0180005496.01.T01:intron | 30.0% | |
| TACAAGTAATTGCTGATAAC+TGG | - | Chr1:92504306-92504325 | None:intergenic | 30.0% | |
| TAGAGTTCTTTAGTAAGAGA+TGG | + | Chr1:92505972-92505991 | MsG0180005496.01.T01:exon | 30.0% | |
| TATAAGAACATTCTGCAACA+AGG | - | Chr1:92505257-92505276 | None:intergenic | 30.0% | |
| TATAGAACTGCCTAAGATAT+TGG | + | Chr1:92505074-92505093 | MsG0180005496.01.T01:intron | 30.0% | |
| TATGGCATAAAAAATGTCAG+TGG | - | Chr1:92503589-92503608 | None:intergenic | 30.0% | |
| TCCCTGATTATATTATGTCT+TGG | + | Chr1:92504973-92504992 | MsG0180005496.01.T01:intron | 30.0% | |
| TCTTATGTTCAGTACCATAA+TGG | + | Chr1:92505140-92505159 | MsG0180005496.01.T01:intron | 30.0% | |
| TGCAGTATTGTGAAGAAAAT+GGG | + | Chr1:92505909-92505928 | MsG0180005496.01.T01:CDS | 30.0% | |
| ! | GAACATCAGATTAAAGCTTT+TGG | + | Chr1:92504779-92504798 | MsG0180005496.01.T01:CDS | 30.0% |
| ! | GAACTTTAAGTTAAGCATGA+AGG | - | Chr1:92504500-92504519 | None:intergenic | 30.0% |
| ! | GTTGTAAATTGATTTAACGG+CGG | - | Chr1:92505373-92505392 | None:intergenic | 30.0% |
| !! | ATTGTGAAGAAAATGGGTTA+TGG | + | Chr1:92505915-92505934 | MsG0180005496.01.T01:CDS | 30.0% |
| !! | CATGTTTCAATTTTAGTAGG+GGG | - | Chr1:92504331-92504350 | None:intergenic | 30.0% |
| !! | CCATGTTTCAATTTTAGTAG+GGG | - | Chr1:92504332-92504351 | None:intergenic | 30.0% |
| !! | CTCCATGTTTCAATTTTAGT+AGG | - | Chr1:92504334-92504353 | None:intergenic | 30.0% |
| !! | TTATGAATTGGAAGTGTTGT+TGG | + | Chr1:92506031-92506050 | MsG0180005496.01.T01:three_prime_UTR | 30.0% |
| !! | TTATGGTGATGGTTTCATAT+GGG | + | Chr1:92505932-92505951 | MsG0180005496.01.T01:CDS | 30.0% |
| !!! | CTGAGTTAGTTTTTGATTTG+GGG | + | Chr1:92504728-92504747 | MsG0180005496.01.T01:intron | 30.0% |
| !!! | GTTTAAAGCTTTTGATTTGG+GGG | + | Chr1:92504811-92504830 | MsG0180005496.01.T01:CDS | 30.0% |
| !!! | TGAGTTAGTTTTTGATTTGG+GGG | + | Chr1:92504729-92504748 | MsG0180005496.01.T01:intron | 30.0% |
| !!! | TGATAACTGGTGGTTTTTTA+GGG | - | Chr1:92504293-92504312 | None:intergenic | 30.0% |
| !!! | TTTAAAGCTTTTGATTTGGG+GGG | + | Chr1:92504812-92504831 | MsG0180005496.01.T01:CDS | 30.0% |
| AAGACACCAAAGTCATTGAT+TGG | - | Chr1:92503260-92503279 | None:intergenic | 35.0% | |
| AAGTAATTGCTGATAACTGG+TGG | - | Chr1:92504303-92504322 | None:intergenic | 35.0% | |
| AATGTTAAGCATGAAGGAGA+AGG | - | Chr1:92504424-92504443 | None:intergenic | 35.0% | |
| ACACCATATAAAACATCGAG+TGG | + | Chr1:92503973-92503992 | MsG0180005496.01.T01:intron | 35.0% | |
| ACTCAAAATGAGATTTAGGG+TGG | - | Chr1:92504393-92504412 | None:intergenic | 35.0% | |
| AGAGCCAGAAATGTCTTATA+AGG | - | Chr1:92505525-92505544 | None:intergenic | 35.0% | |
| ATCTCCTCAAATCAATTGAC+TGG | - | Chr1:92504012-92504031 | None:intergenic | 35.0% | |
| ATGAAAATTTGGATGCCACT+AGG | + | Chr1:92504947-92504966 | MsG0180005496.01.T01:intron | 35.0% | |
| ATGTTAAGCATGAAGGAGAA+GGG | - | Chr1:92504423-92504442 | None:intergenic | 35.0% | |
| ATTTAGTGGCATGGAAATGA+AGG | + | Chr1:92504167-92504186 | MsG0180005496.01.T01:intron | 35.0% | |
| CACCATATAAAACATCGAGT+GGG | + | Chr1:92503974-92503993 | MsG0180005496.01.T01:intron | 35.0% | |
| CCCCTACTAAAATTGAAACA+TGG | + | Chr1:92504329-92504348 | MsG0180005496.01.T01:intron | 35.0% | |
| CTCCTTTCTGATGAATCATT+GGG | + | Chr1:92505729-92505748 | MsG0180005496.01.T01:CDS | 35.0% | |
| GTGCAGTATTGTGAAGAAAA+TGG | + | Chr1:92505908-92505927 | MsG0180005496.01.T01:CDS | 35.0% | |
| TCTCCTTTCTGATGAATCAT+TGG | + | Chr1:92505728-92505747 | MsG0180005496.01.T01:CDS | 35.0% | |
| TGAGCAGCAGAAACAATAAA+TGG | - | Chr1:92504266-92504285 | None:intergenic | 35.0% | |
| TGATGAGTCAAAAAAGGAGT+TGG | + | Chr1:92505701-92505720 | MsG0180005496.01.T01:CDS | 35.0% | |
| TTCCCAATGATTCATCAGAA+AGG | - | Chr1:92505734-92505753 | None:intergenic | 35.0% | |
| TTCTTTAGTAAGAGATGGCT+TGG | + | Chr1:92505977-92505996 | MsG0180005496.01.T01:three_prime_UTR | 35.0% | |
| TTGTTGTATAGCAGTGTTGT+TGG | + | Chr1:92504655-92504674 | MsG0180005496.01.T01:intron | 35.0% | |
| TTTACAATGGTGAAAAACGG+TGG | + | Chr1:92504111-92504130 | MsG0180005496.01.T01:intron | 35.0% | |
| ! | AACATCAAATGTTGATTGGC+TGG | + | Chr1:92504058-92504077 | MsG0180005496.01.T01:intron | 35.0% |
| ! | ATGGTCTTACGGACAAATAA+AGG | - | Chr1:92504092-92504111 | None:intergenic | 35.0% |
| ! | CACCATTGTAAATGGTCTTA+CGG | - | Chr1:92504103-92504122 | None:intergenic | 35.0% |
| ! | GAGAAACAAACTTGATGGTT+TGG | + | Chr1:92505419-92505438 | MsG0180005496.01.T01:intron | 35.0% |
| !! | AAGAAAATGGGTTATGGTGA+TGG | + | Chr1:92505921-92505940 | MsG0180005496.01.T01:CDS | 35.0% |
| !! | CAATTTTGTTTCCAAGGACA+AGG | - | Chr1:92505767-92505786 | None:intergenic | 35.0% |
| !! | CCGTTTTTCACCATTGTAAA+TGG | - | Chr1:92504111-92504130 | None:intergenic | 35.0% |
| !! | CTTTTGTTTATGAGGAGTAG+AGG | - | Chr1:92503562-92503581 | None:intergenic | 35.0% |
| !! | GCCGTTTTATGCTATTAACA+TGG | + | Chr1:92503353-92503372 | MsG0180005496.01.T01:CDS | 35.0% |
| !! | GTGGTACACTTTTGTTTATG+AGG | - | Chr1:92503570-92503589 | None:intergenic | 35.0% |
| !! | GTTATGGTGATGGTTTCATA+TGG | + | Chr1:92505931-92505950 | MsG0180005496.01.T01:CDS | 35.0% |
| !! | TGAACCAGTCAATTGATTTG+AGG | + | Chr1:92504005-92504024 | MsG0180005496.01.T01:intron | 35.0% |
| !!! | AAAAAGCACTTTTTACCTGC+TGG | + | Chr1:92504204-92504223 | MsG0180005496.01.T01:intron | 35.0% |
| !!! | ATAACTGGTGGTTTTTTAGG+GGG | - | Chr1:92504291-92504310 | None:intergenic | 35.0% |
| !!! | CTGATAACTGGTGGTTTTTT+AGG | - | Chr1:92504294-92504313 | None:intergenic | 35.0% |
| !!! | GAGTTAGTTTTTGATTTGGG+GGG | + | Chr1:92504730-92504749 | MsG0180005496.01.T01:intron | 35.0% |
| !!! | GATAACTGGTGGTTTTTTAG+GGG | - | Chr1:92504292-92504311 | None:intergenic | 35.0% |
| AGACGAATTGCGTTACCATT+TGG | + | Chr1:92505809-92505828 | MsG0180005496.01.T01:CDS | 40.0% | |
| AGTCGAGAATTTCAGAGCTA+AGG | - | Chr1:92503920-92503939 | None:intergenic | 40.0% | |
| ATCAGATTGCTCGTAGAGTA+TGG | + | Chr1:92504755-92504774 | MsG0180005496.01.T01:intron | 40.0% | |
| ATGGAAAGATTACTATGCCC+AGG | + | Chr1:92504856-92504875 | MsG0180005496.01.T01:CDS | 40.0% | |
| GACGAATTGCGTTACCATTT+GGG | + | Chr1:92505810-92505829 | MsG0180005496.01.T01:CDS | 40.0% | |
| GCAGATCCAATCAATGACTT+TGG | + | Chr1:92503251-92503270 | MsG0180005496.01.T01:CDS | 40.0% | |
| GCATAGAAAAAGAGAGACCT+GGG | - | Chr1:92504876-92504895 | None:intergenic | 40.0% | |
| GGAAATGTCAAGAACATGTG+TGG | - | Chr1:92504464-92504483 | None:intergenic | 40.0% | |
| GTCCGTAAGACCATTTACAA+TGG | + | Chr1:92504098-92504117 | MsG0180005496.01.T01:intron | 40.0% | |
| GTCTTACGGACAAATAAAGG+AGG | - | Chr1:92504089-92504108 | None:intergenic | 40.0% | |
| GTTGTGCATATTTAGTGGCA+TGG | + | Chr1:92504158-92504177 | MsG0180005496.01.T01:intron | 40.0% | |
| TCAGATTGCTCGTAGAGTAT+TGG | + | Chr1:92504756-92504775 | MsG0180005496.01.T01:intron | 40.0% | |
| TGTTTCCAAGGACAAGGAAA+GGG | - | Chr1:92505761-92505780 | None:intergenic | 40.0% | |
| TTGTTTCCAAGGACAAGGAA+AGG | - | Chr1:92505762-92505781 | None:intergenic | 40.0% | |
| ! | ACATGGATATTCTGGAGACA+TGG | + | Chr1:92503299-92503318 | MsG0180005496.01.T01:CDS | 40.0% |
| ! | AGATTTTGTGCACGCACATA+CGG | + | Chr1:92504028-92504047 | MsG0180005496.01.T01:intron | 40.0% |
| ! | CAAATGTTGATTGGCTGGAT+TGG | + | Chr1:92504063-92504082 | MsG0180005496.01.T01:intron | 40.0% |
| ! | CAGATTGCTCGTAGAGTATT+GGG | + | Chr1:92504757-92504776 | MsG0180005496.01.T01:intron | 40.0% |
| ! | CATGAAGGAGAAAGCATATC+TGG | - | Chr1:92504485-92504504 | None:intergenic | 40.0% |
| ! | GTCCCACTCGATGTTTTATA+TGG | - | Chr1:92503979-92503998 | None:intergenic | 40.0% |
| !! | TCATGAGTTTGTTGCAATGC+AGG | + | Chr1:92505632-92505651 | MsG0180005496.01.T01:intron | 40.0% |
| !! | TTTTGTTTGTGTCGCTAGAC+AGG | + | Chr1:92505017-92505036 | MsG0180005496.01.T01:intron | 40.0% |
| AACCGAGAAACATTACGTGC+TGG | + | Chr1:92505581-92505600 | MsG0180005496.01.T01:intron | 45.0% | |
| AATGTCCCTTTCCTTGTCCT+TGG | + | Chr1:92505753-92505772 | MsG0180005496.01.T01:CDS | 45.0% | |
| ACATGAATACCTCCATGGGT+CGG | - | Chr1:92505890-92505909 | None:intergenic | 45.0% | |
| ACTGCACATGAATACCTCCA+TGG | - | Chr1:92505895-92505914 | None:intergenic | 45.0% | |
| ATCCGGAGACATGGATATTC+TGG | + | Chr1:92503291-92503310 | MsG0180005496.01.T01:CDS | 45.0% | |
| ATTTACCTTACCCTTGCCAG+TGG | - | Chr1:92505850-92505869 | None:intergenic | 45.0% | |
| CACCAGCACGTAATGTTTCT+CGG | - | Chr1:92505586-92505605 | None:intergenic | 45.0% | |
| CTCCAGAATATCCATGTCTC+CGG | - | Chr1:92503296-92503315 | None:intergenic | 45.0% | |
| CTGCACATGAATACCTCCAT+GGG | - | Chr1:92505894-92505913 | None:intergenic | 45.0% | |
| GGCATAGAAAAAGAGAGACC+TGG | - | Chr1:92504877-92504896 | None:intergenic | 45.0% | |
| GTAACGCAATTCGTCTTCTG+AGG | - | Chr1:92505805-92505824 | None:intergenic | 45.0% | |
| GTCAAGAACATGTGTGGCTA+TGG | - | Chr1:92504458-92504477 | None:intergenic | 45.0% | |
| TATAATCAGGGAAGGCCTAG+TGG | - | Chr1:92504965-92504984 | None:intergenic | 45.0% | |
| TGAAGTTGCTCAAGCCCAAA+TGG | - | Chr1:92505827-92505846 | None:intergenic | 45.0% | |
| TGTCTTCAACGTTGCAGATC+CGG | + | Chr1:92503274-92503293 | MsG0180005496.01.T01:CDS | 45.0% | |
| ! | CACAACTCTTTTGCTTGTGC+AGG | - | Chr1:92504144-92504163 | None:intergenic | 45.0% |
| ! | GTCATTGATTGGATCTGCAC+TGG | - | Chr1:92503249-92503268 | None:intergenic | 45.0% |
| !!! | AATTTTTTTTTTTTTAATGT+TGG | - | Chr1:92503860-92503879 | None:intergenic | 5.0% |
| AGACTCAAATGTCCGACCCA+TGG | + | Chr1:92505875-92505894 | MsG0180005496.01.T01:CDS | 50.0% | |
| AGCAACTTCACCACTGGCAA+GGG | + | Chr1:92505837-92505856 | MsG0180005496.01.T01:CDS | 50.0% | |
| ATGGGTCGGACATTTGAGTC+TGG | - | Chr1:92505876-92505895 | None:intergenic | 50.0% | |
| GCATGGAAATGAAGGACAGC+TGG | + | Chr1:92504175-92504194 | MsG0180005496.01.T01:intron | 50.0% | |
| GGTGGTGTTTCACGTGTGTA+AGG | - | Chr1:92504375-92504394 | None:intergenic | 50.0% | |
| TGCAATGCAGGTAGATGCAG+TGG | + | Chr1:92505644-92505663 | MsG0180005496.01.T01:intron | 50.0% | |
| TGGAAATGAAGGACAGCTGG+CGG | + | Chr1:92504178-92504197 | MsG0180005496.01.T01:intron | 50.0% | |
| !! | TCGTCTTCTGAGGCAGCATA+TGG | - | Chr1:92505795-92505814 | None:intergenic | 50.0% |
| ACGTTGCAGATCCGGAGACA+TGG | + | Chr1:92503282-92503301 | MsG0180005496.01.T01:CDS | 55.0% | |
| CTCAAATGTCCGACCCATGG+AGG | + | Chr1:92505878-92505897 | MsG0180005496.01.T01:CDS | 55.0% | |
| CTTCACCACTGGCAAGGGTA+AGG | + | Chr1:92505842-92505861 | MsG0180005496.01.T01:CDS | 55.0% | |
| GAGCAACTTCACCACTGGCA+AGG | + | Chr1:92505836-92505855 | MsG0180005496.01.T01:CDS | 55.0% | |
| GGCTTGAGCAACTTCACCAC+TGG | + | Chr1:92505831-92505850 | MsG0180005496.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 92503210 | 92506129 | 92503210 | ID=MsG0180005496.01;Name=MsG0180005496.01 |
| Chr1 | mRNA | 92503210 | 92506129 | 92503210 | ID=MsG0180005496.01.T01;Parent=MsG0180005496.01;Name=MsG0180005496.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0.5|0.33|0.66|0.5|0.66|3|155|205 |
| Chr1 | exon | 92503210 | 92503388 | 92503210 | ID=MsG0180005496.01.T01:exon:18978;Parent=MsG0180005496.01.T01 |
| Chr1 | exon | 92504760 | 92504877 | 92504760 | ID=MsG0180005496.01.T01:exon:18979;Parent=MsG0180005496.01.T01 |
| Chr1 | exon | 92505654 | 92506129 | 92505654 | ID=MsG0180005496.01.T01:exon:18980;Parent=MsG0180005496.01.T01 |
| Chr1 | CDS | 92503210 | 92503388 | 92503210 | ID=MsG0180005496.01.T01:cds;Parent=MsG0180005496.01.T01 |
| Chr1 | CDS | 92504760 | 92504877 | 92504760 | ID=MsG0180005496.01.T01:cds;Parent=MsG0180005496.01.T01 |
| Chr1 | CDS | 92505654 | 92505974 | 92505654 | ID=MsG0180005496.01.T01:cds;Parent=MsG0180005496.01.T01 |
| Chr1 | three_prime_UTR | 92505975 | 92506129 | 92505975 | ID=MsG0180005496.01.T01:three_prime_utr;Parent=MsG0180005496.01.T01 |
| Gene Sequence |
| Protein sequence |
